Query psy17914
Match_columns 469
No_of_seqs 346 out of 677
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 17:21:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3106|consensus 100.0 2.1E-54 4.5E-59 405.6 9.3 177 1-210 32-211 (212)
2 COG5196 ERD2 ER lumen protein 100.0 6.7E-45 1.5E-49 336.6 9.9 177 1-210 32-213 (214)
3 KOG3106|consensus 100.0 5.2E-45 1.1E-49 342.3 3.4 161 61-316 45-205 (212)
4 PF00810 ER_lumen_recept: ER l 100.0 1.5E-40 3.2E-45 303.3 9.9 141 1-172 5-147 (147)
5 COG5196 ERD2 ER lumen protein 100.0 4E-35 8.7E-40 271.7 4.3 160 61-315 45-206 (214)
6 PF00810 ER_lumen_recept: ER l 99.9 2.7E-25 5.9E-30 203.1 0.3 96 323-419 47-147 (147)
7 PF02790 COX2_TM: Cytochrome C 29.4 94 0.002 25.1 4.2 44 74-123 23-67 (84)
8 PRK13743 conjugal transfer pro 25.1 45 0.00098 31.0 1.8 64 51-135 26-95 (141)
9 PF04193 PQ-loop: PQ loop repe 15.2 4.8E+02 0.01 19.8 5.3 35 119-153 3-37 (61)
10 PF10606 GluR_Homer-bdg: Homer 13.7 62 0.0013 25.5 0.0 13 448-460 36-48 (51)
No 1
>KOG3106|consensus
Probab=100.00 E-value=2.1e-54 Score=405.55 Aligned_cols=177 Identities=60% Similarity=0.960 Sum_probs=169.7
Q ss_pred CccchhhHHHHHHHhhcccccchhhhhhhhHHHHHHHHHHHHHhhhheeccccccccCCCcceeehhhhhhhhhhhhhHH
Q psy17914 1 ISGKSQFLFAIVYTARYLDLFTSYVSVYNSFMKIVFIAASYGTVYLMYIKFKATYDHNHDTFRYLDLFTSYVSVYNSFMK 80 (469)
Q Consensus 1 iSlkTQ~Ly~lVf~tRYlDlf~~~~s~ynt~mKi~~i~~s~~~iylm~~~~~~tyd~~~Dt~RyldLf~~fiSlYNTiMK 80 (469)
||+|||+|||+||++||+|+|+.+.|.|||+||++||++|.++||||+.|+|+|||+|+||+|.+.++.
T Consensus 32 iSlKSQ~L~Alvf~~Ryldlf~~~~s~ynt~mki~fl~~t~~ivymi~~k~~~tYd~~~DtFri~~llv----------- 100 (212)
T KOG3106|consen 32 ISLKSQELFALVFATRYLDLFTFYESLYNTIMKIAFLASTLWIVYMIRFKLRATYDKEKDTFRIEYLLV----------- 100 (212)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCceeEEEEeh-----------
Confidence 799999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHhhhhhcccccccCCCCccccccCCCchhhhHHHHhhhhHhHhhhhhhhhhcccccccchhhHHHHHhHH
Q psy17914 81 IVFIAASYGTVYLMYIKFKATYDHNHDTFRGLLSESDPTVLWTFSIYLESVAILPQLFLVSKTGEAESITSHYLFALGAY 160 (469)
Q Consensus 81 ivfI~~s~~liylm~~k~k~Tyd~~~DtFr~~~~~~~~eiLwtFSi~LEsvAILPQLfll~kt~eve~lTshYl~aLg~y 160 (469)
||++++. ..||++ .+.|++|+||++||||||||||+|+||+||+|++|+||+++||+|
T Consensus 101 -----p~~vlsl----------~i~~~~-------t~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~y 158 (212)
T KOG3106|consen 101 -----PSAVLSL----------LINHSF-------TILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGLY 158 (212)
T ss_pred -----hheeeee----------eecCCc-------cHHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 9999999 778887 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccchhhHhHHHHHHHHHhhcceeeeeec---CCccccC
Q psy17914 161 RALYLLNWVYRYYSEDYLDLIAIVAGVVQTALYCDFFYLYITR---GKPVDSC 210 (469)
Q Consensus 161 R~lyii~Wi~ry~~s~~lEsVAILpqLvqtily~dFfyly~~r---g~~~~~~ 210 (469)
|++|+.||++|+..+.+++.+|+++|++||++++||||+|++| |++++.|
T Consensus 159 R~ly~~~WI~r~~~e~~~~~iai~agiVQT~ly~DFfy~Y~~~v~~g~~~~LP 211 (212)
T KOG3106|consen 159 RALYIANWIYRYVTEDFWDPIAIVAGIVQTVLYADFFYLYVTKVLQGKKLKLP 211 (212)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhHHHHHHHHHHcCCcCCCC
Confidence 9999999999999999999999999999999999999999988 6666654
No 2
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.7e-45 Score=336.60 Aligned_cols=177 Identities=47% Similarity=0.763 Sum_probs=161.9
Q ss_pred CccchhhHHHHHHHhhccccc-chhhhhhhhHHHHHHHHHHHHHhhhheeccccccccCCCcceeehhhhhhhhhhhhhH
Q psy17914 1 ISGKSQFLFAIVYTARYLDLF-TSYVSVYNSFMKIVFIAASYGTVYLMYIKFKATYDHNHDTFRYLDLFTSYVSVYNSFM 79 (469)
Q Consensus 1 iSlkTQ~Ly~lVf~tRYlDlf-~~~~s~ynt~mKi~~i~~s~~~iylm~~~~~~tyd~~~Dt~RyldLf~~fiSlYNTiM 79 (469)
+|+|||.||++||++||+|+| ..+.|.||.+||++||+++.+|++||+.++++||||..|++|.+.|+.
T Consensus 32 lSlKtq~Ly~lVfitRYldLf~f~~~slYn~lMki~FI~s~~yI~~lm~~~~r~tYdk~lDtF~i~~ll~---------- 101 (214)
T COG5196 32 LSLKTQFLYSLVFITRYLDLFDFYARSLYNSLMKILFIGSQVYILFLMRFKYRSTYDKKLDTFNILTLLV---------- 101 (214)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHhhhhhhhhhhhh----------
Confidence 699999999999999999999 578999999999999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCCCCccccccCCCchhhhHHHHhhhhHhHhhhhhhhhhcccccccchhhHHHHHhH
Q psy17914 80 KIVFIAASYGTVYLMYIKFKATYDHNHDTFRGLLSESDPTVLWTFSIYLESVAILPQLFLVSKTGEAESITSHYLFALGA 159 (469)
Q Consensus 80 KivfI~~s~~liylm~~k~k~Tyd~~~DtFr~~~~~~~~eiLwtFSi~LEsvAILPQLfll~kt~eve~lTshYl~aLg~ 159 (469)
+|++.+. ..++.. ++.+++|+||++|||||||||++|+|+.||-|++|+||++++|+
T Consensus 102 ------gsav~sl----------ff~~~~-------tisnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgL 158 (214)
T COG5196 102 ------GSAVFSL----------FFTRGG-------TISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGL 158 (214)
T ss_pred ------hhhhhee----------eecCCc-------cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHH
Confidence 8888877 333332 56789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccc-ccchhhHhHHHHHHHHHhhcceeeeeec---CCccccC
Q psy17914 160 YRALYLLNWVYRYYSE-DYLDLIAIVAGVVQTALYCDFFYLYITR---GKPVDSC 210 (469)
Q Consensus 160 yR~lyii~Wi~ry~~s-~~lEsVAILpqLvqtily~dFfyly~~r---g~~~~~~ 210 (469)
||++|+++|+||+..+ .-.+-+||.+|++||.+|.|||+.|.+. |++...|
T Consensus 159 YRalYip~wI~r~~~~~kk~~~iai~aGivQTlLY~DFf~iYyr~V~rGk~f~LP 213 (214)
T COG5196 159 YRALYIPYWILRKVYDIKKTGNIAIAAGIVQTLLYLDFFAIYYRYVFRGKSFSLP 213 (214)
T ss_pred HHHhhhhHHHHHhhhcccccccchhHHHHHHHHHHHHhHHhhhhhhhcccccCCC
Confidence 9999999999998776 6789999999999999999999999765 7666654
No 3
>KOG3106|consensus
Probab=100.00 E-value=5.2e-45 Score=342.30 Aligned_cols=161 Identities=45% Similarity=0.780 Sum_probs=144.6
Q ss_pred cceeehhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhcccccccCCCCccccccCCCchhhhHHHHhhhhHhHhhhhhhhh
Q psy17914 61 TFRYLDLFTSYVSVYNSFMKIVFIAASYGTVYLMYIKFKATYDHNHDTFRGLLSESDPTVLWTFSIYLESVAILPQLFLV 140 (469)
Q Consensus 61 t~RyldLf~~fiSlYNTiMKivfI~~s~~liylm~~k~k~Tyd~~~DtFr~~~~~~~~eiLwtFSi~LEsvAILPQLfll 140 (469)
.+||+|+|+.+.|+|||+||++|++++..++|||++|+|+|||+|+|+||++ ++ +.||++|+.++.
T Consensus 45 ~~Ryldlf~~~~s~ynt~mki~fl~~t~~ivymi~~k~~~tYd~~~DtFri~-------~l------lvp~~vlsl~i~- 110 (212)
T KOG3106|consen 45 ATRYLDLFTFYESLYNTIMKIAFLASTLWIVYMIRFKLRATYDKEKDTFRIE-------YL------LVPSAVLSLLIN- 110 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCceeEE-------EE------ehhheeeeeeec-
Confidence 4699999999999999999999999999999999999999999999999974 43 569999998873
Q ss_pred hcccccccchhhHHHHHhHHHHHHHHHHHhhhcccccchhhHhHHHHHHHHHhhcceeeeeecCCccccCcccccccCCc
Q psy17914 141 SKTGEAESITSHYLFALGAYRALYLLNWVYRYYSEDYLDLIAIVAGVVQTALYCDFFYLYITRGKPVDSCGLCHNIVPGP 220 (469)
Q Consensus 141 ~kt~eve~lTshYl~aLg~yR~lyii~Wi~ry~~s~~lEsVAILpqLvqtily~dFfyly~~rg~~~~~~~~~~~~~~r~ 220 (469)
+. ++ +..+.|.+ |+|+|||||+||++| +|++|++|++
T Consensus 111 ------~~------~t------~~eilWtF----siyLEsVaILPQL~~-----------------lq~tg~~E~~---- 147 (212)
T KOG3106|consen 111 ------HS------FT------ILEILWTF----SIYLESVAILPQLFM-----------------LQKTGEAETI---- 147 (212)
T ss_pred ------CC------cc------HHHHHHHH----HHHHHHHHHhHHHHH-----------------HHhcCCccch----
Confidence 11 11 34677766 899999999999999 6788999995
Q ss_pred ceeeceeeeecccccchhhheehhceeeeeccceeeeeeeeeeeeehhhhhHHHhhhhhhhhhcCcccchhhhHhHHHHH
Q psy17914 221 LYLLNWVYRYYSEDYLDLIAIVAGVVQTALYCDFFYLLQTRVVCVITLYRVLYLLNWVYRYYSEDYLDLIAIVAGVVQTA 300 (469)
Q Consensus 221 lYi~NWiyRy~~e~~~d~iavvaG~vQT~ly~dFfy~y~t~v~~~~~~~r~~y~~~w~~~~~~~~~~~~~~~~~~~~qt~ 300 (469)
|+||++|+|+||++|++|||+|+..|+++|+|+++||+|||.
T Consensus 148 --------------------------------------TahYvfaLG~yR~ly~~~WI~r~~~e~~~~~iai~agiVQT~ 189 (212)
T KOG3106|consen 148 --------------------------------------TAHYLFALGLYRALYIANWIYRYVTEDFWDPIAIVAGIVQTV 189 (212)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhh
Q psy17914 301 LYCDFFYLLQTRVVCV 316 (469)
Q Consensus 301 ~~~df~~~Y~~~v~~~ 316 (469)
|||||||+|+|+|+.-
T Consensus 190 ly~DFfy~Y~~~v~~g 205 (212)
T KOG3106|consen 190 LYADFFYLYVTKVLQG 205 (212)
T ss_pred HHHhHHHHHHHHHHcC
Confidence 9999999999999753
No 4
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=100.00 E-value=1.5e-40 Score=303.32 Aligned_cols=141 Identities=56% Similarity=0.934 Sum_probs=128.8
Q ss_pred CccchhhHHHHHHHhhcccc--cchhhhhhhhHHHHHHHHHHHHHhhhheeccccccccCCCcceeehhhhhhhhhhhhh
Q psy17914 1 ISGKSQFLFAIVYTARYLDL--FTSYVSVYNSFMKIVFIAASYGTVYLMYIKFKATYDHNHDTFRYLDLFTSYVSVYNSF 78 (469)
Q Consensus 1 iSlkTQ~Ly~lVf~tRYlDl--f~~~~s~ynt~mKi~~i~~s~~~iylm~~~~~~tyd~~~Dt~RyldLf~~fiSlYNTi 78 (469)
||+|||+||++||++||+|+ +.++.|.||++||++++++|++++|+|+.|+|+||||++|++|...++.
T Consensus 5 lSlktq~ly~~vf~~Ryldl~~f~~~~s~y~~~~k~~~i~~s~~iiyli~~~~~~Ty~~~~D~f~~~~li~--------- 75 (147)
T PF00810_consen 5 LSLKTQILYAIVFLTRYLDLFWFESYLSLYNTIMKVFFIVSSLYIIYLIFFKYKSTYDKEIDTFRLEYLIV--------- 75 (147)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhheeehhhhhccccchhhhHHHH---------
Confidence 69999999999999999999 8888899999999999999999999999999999999999999876554
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccCCCCccccccCCCchhhhHHHHhhhhHhHhhhhhhhhhcccccccchhhHHHHHh
Q psy17914 79 MKIVFIAASYGTVYLMYIKFKATYDHNHDTFRGLLSESDPTVLWTFSIYLESVAILPQLFLVSKTGEAESITSHYLFALG 158 (469)
Q Consensus 79 MKivfI~~s~~liylm~~k~k~Tyd~~~DtFr~~~~~~~~eiLwtFSi~LEsvAILPQLfll~kt~eve~lTshYl~aLg 158 (469)
||+.++. ..|++ +...+.|++|+||++||++|||||++|+||+||+|++|+||++++|
T Consensus 76 -------p~~vLa~----------i~~p~-----~~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg 133 (147)
T PF00810_consen 76 -------PCFVLAL----------IFHPL-----NSFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALG 133 (147)
T ss_pred -------HHHHHHH----------HHhcc-----ccchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHH
Confidence 9998888 33320 1126789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy17914 159 AYRALYLLNWVYRY 172 (469)
Q Consensus 159 ~yR~lyii~Wi~ry 172 (469)
+||+++++||++||
T Consensus 134 ~yR~ly~~~Wi~rY 147 (147)
T PF00810_consen 134 LYRALYLLNWIYRY 147 (147)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999985
No 5
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=100.00 E-value=4e-35 Score=271.73 Aligned_cols=160 Identities=36% Similarity=0.557 Sum_probs=137.5
Q ss_pred cceeehhh-hhhhhhhhhhHHHHHHHHHHHHHhhhhhcccccccCCCCccccccCCCchhhhHHHHhhhhHhHhhhhhhh
Q psy17914 61 TFRYLDLF-TSYVSVYNSFMKIVFIAASYGTVYLMYIKFKATYDHNHDTFRGLLSESDPTVLWTFSIYLESVAILPQLFL 139 (469)
Q Consensus 61 t~RyldLf-~~fiSlYNTiMKivfI~~s~~liylm~~k~k~Tyd~~~DtFr~~~~~~~~eiLwtFSi~LEsvAILPQLfl 139 (469)
.+||+||+ ..+.|+||++||++||++..++++||+.|+|+|||+..|+|+++ .+ +.++|+++..+.
T Consensus 45 itRYldLf~f~~~slYn~lMki~FI~s~~yI~~lm~~~~r~tYdk~lDtF~i~-------~l------l~gsav~slff~ 111 (214)
T COG5196 45 ITRYLDLFDFYARSLYNSLMKILFIGSQVYILFLMRFKYRSTYDKKLDTFNIL-------TL------LVGSAVFSLFFT 111 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHhhhhhhhh-------hh------hhhhhhheeeec
Confidence 37999999 56789999999999999999999999999999999999999863 33 668998888773
Q ss_pred hhcccccccchhhHHHHHhHHHHHHHHHHHhhhcccccchhhHhHHHHHHHHHhhcceeeeeecCCccccCcccccccCC
Q psy17914 140 VSKTGEAESITSHYLFALGAYRALYLLNWVYRYYSEDYLDLIAIVAGVVQTALYCDFFYLYITRGKPVDSCGLCHNIVPG 219 (469)
Q Consensus 140 l~kt~eve~lTshYl~aLg~yR~lyii~Wi~ry~~s~~lEsVAILpqLvqtily~dFfyly~~rg~~~~~~~~~~~~~~r 219 (469)
+. +. +..+.|. +|.|+|+|||+||++|+ |+.||.|++
T Consensus 112 --~~---------~t--------isnvlwt----fS~wLESVAILPQL~mL-----------------q~~Getesl--- 148 (214)
T COG5196 112 --RG---------GT--------ISNVLWT----FSLWLESVAILPQLVML-----------------QEAGETESL--- 148 (214)
T ss_pred --CC---------cc--------HHHHHHH----HHHHHHHHHHHHHHHHH-----------------HhcCCccee---
Confidence 11 11 1234454 58999999999999994 556777785
Q ss_pred cceeeceeeeecccccchhhheehhceeeeeccceeeeeeeeeeeeehhhhhHHHhhhhhhhhhcC-cccchhhhHhHHH
Q psy17914 220 PLYLLNWVYRYYSEDYLDLIAIVAGVVQTALYCDFFYLLQTRVVCVITLYRVLYLLNWVYRYYSED-YLDLIAIVAGVVQ 298 (469)
Q Consensus 220 ~lYi~NWiyRy~~e~~~d~iavvaG~vQT~ly~dFfy~y~t~v~~~~~~~r~~y~~~w~~~~~~~~-~~~~~~~~~~~~q 298 (469)
++|+++|+|+||++|++|||+|+-.|+ ..+.+|+.||++|
T Consensus 149 ---------------------------------------T~hYvfamgLYRalYip~wI~r~~~~~kk~~~iai~aGivQ 189 (214)
T COG5196 149 ---------------------------------------TSHYVFAMGLYRALYIPYWILRKVYDIKKTGNIAIAAGIVQ 189 (214)
T ss_pred ---------------------------------------HHHHHHHHHHHHHhhhhHHHHHhhhcccccccchhHHHHHH
Confidence 699999999999999999999999884 6999999999999
Q ss_pred HHHHhhhhhhhhhhhhh
Q psy17914 299 TALYCDFFYLLQTRVVC 315 (469)
Q Consensus 299 t~~~~df~~~Y~~~v~~ 315 (469)
|.||.|||++|+++|.-
T Consensus 190 TlLY~DFf~iYyr~V~r 206 (214)
T COG5196 190 TLLYLDFFAIYYRYVFR 206 (214)
T ss_pred HHHHHHhHHhhhhhhhc
Confidence 99999999999999875
No 6
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=99.90 E-value=2.7e-25 Score=203.15 Aligned_cols=96 Identities=27% Similarity=0.450 Sum_probs=87.8
Q ss_pred HHHhhhhhhhc---ccCCCCeeehhHhhhhhhhhhhhhhh--hcccccccccchhhhhhhccccceeeeeeecCceeeee
Q psy17914 323 LYLLNWVYRYY---SEDYLDLIAIVAGVVQTALYCDFFYL--YITRVKTTWTLLPLWLELFRPPSTVTSSICTSLEVSLQ 397 (469)
Q Consensus 323 lyilnwi~r~~---~~~~~D~~~~i~gIi~taL~a~ff~~--~~~~~d~~Wtf~alylEs~a~lpQl~m~~k~g~~~~~t 397 (469)
+++++.+..++ +|++.|.+.....+++++++|.++|| .++..|+.||| |+||||||++|||+|+||+|++|++|
T Consensus 47 ~~iiyli~~~~~~Ty~~~~D~f~~~~li~p~~vLa~i~~p~~~~~~~ei~wtf-Si~LEsvAIlPQL~m~~k~~~ve~lt 125 (147)
T PF00810_consen 47 LYIIYLIFFKYKSTYDKEIDTFRLEYLIVPCFVLALIFHPLNSFFFLEILWTF-SIYLESVAILPQLFMLQKTGEVENLT 125 (147)
T ss_pred HHHHHhhheeehhhhhccccchhhhHHHHHHHHHHHHHhccccchHHHHHHHH-HHHHHHHHHhHHHHHHHHhcCeeehH
Confidence 44555445444 89999999999999999999999994 58999999999 89999999999999999999999999
Q ss_pred hhhHHHHHhhhHhhhhheeeee
Q psy17914 398 TRVVCVVTLYRALYLLNWVYRY 419 (469)
Q Consensus 398 sh~~~al~~~r~l~~~~Wi~~y 419 (469)
+||+++||+||++|++||++||
T Consensus 126 shYv~~Lg~yR~ly~~~Wi~rY 147 (147)
T PF00810_consen 126 SHYVFALGLYRALYLLNWIYRY 147 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998
No 7
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=29.35 E-value=94 Score=25.08 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=23.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhccc-ccccCCCCccccccCCCchhhhHH
Q psy17914 74 VYNSFMKIVFIAASYGTVYLMYIKFK-ATYDHNHDTFRGLLSESDPTVLWT 123 (469)
Q Consensus 74 lYNTiMKivfI~~s~~liylm~~k~k-~Tyd~~~DtFr~~~~~~~~eiLwt 123 (469)
++|.+|-+..+....+...+++.-+| +..++. .. .....|+.||
T Consensus 23 l~~~~~~i~~~I~~~V~~~l~~~~~~~~~~~~~--~~----~~~~lE~~WT 67 (84)
T PF02790_consen 23 LHDFVMIIMIFIFVFVFYFLIYFLFNSKFPNKF--FN----HNNKLEIIWT 67 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSS--S---------SHHHHHHHH
T ss_pred HHHHHHHHHhheeeeEeeecccccccccccccc--cc----cchhhhhhhh
Confidence 46777777666666666655555554 221211 11 1134799998
No 8
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=25.07 E-value=45 Score=31.03 Aligned_cols=64 Identities=27% Similarity=0.459 Sum_probs=35.9
Q ss_pred cccccccCCCcc-eeehhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhcccccc-----cCCCCccccccCCCchhhhHHH
Q psy17914 51 FKATYDHNHDTF-RYLDLFTSYVSVYNSFMKIVFIAASYGTVYLMYIKFKATY-----DHNHDTFRGLLSESDPTVLWTF 124 (469)
Q Consensus 51 ~~~tyd~~~Dt~-RyldLf~~fiSlYNTiMKivfI~~s~~liylm~~k~k~Ty-----d~~~DtFr~~~~~~~~eiLwtF 124 (469)
-|+.|+.+.+.+ ||.||+. +|+++..++-..|..-|..-- |++..+| +++|..
T Consensus 26 ~~rd~~y~~R~~~~Y~~Lfi------------VFl~AG~vLw~vM~~iFd~CIDsWkAdpeLnn~---------rymWNi 84 (141)
T PRK13743 26 TKRDYDYERRVSDIYFDLFI------------VFLTAGIVLWVIMHSIFDACIDSWKADPELNNF---------RYMWNI 84 (141)
T ss_pred hhhhHHHHHHHHHHHHHHHH------------HHHHhhHHHHHHHHHHHHHHHHhhhcChhhhhH---------HHHHHH
Confidence 345566554433 8999986 344444444444444222111 4444444 488998
Q ss_pred HhhhhHhHhhh
Q psy17914 125 SIYLESVAILP 135 (469)
Q Consensus 125 Si~LEsvAILP 135 (469)
-++..|.++.+
T Consensus 85 lMYaIPy~L~A 95 (141)
T PRK13743 85 LMYVIPYTLWA 95 (141)
T ss_pred HHHHHHHHHHH
Confidence 88888888633
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=15.15 E-value=4.8e+02 Score=19.77 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=24.8
Q ss_pred hhhHHHHhhhhHhHhhhhhhhhhcccccccchhhH
Q psy17914 119 TVLWTFSIYLESVAILPQLFLVSKTGEAESITSHY 153 (469)
Q Consensus 119 eiLwtFSi~LEsvAILPQLfll~kt~eve~lTshY 153 (469)
+.+...+..+..++-+||+....|++..+.+..-.
T Consensus 3 ~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~ 37 (61)
T PF04193_consen 3 NILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWF 37 (61)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHccccccccHHH
Confidence 34556677788889999999887776665554333
No 10
>PF10606 GluR_Homer-bdg: Homer-binding domain of metabotropic glutamate receptor ; InterPro: IPR019588 This entry represents the proline-rich region of metabotropic glutamate receptor proteins that bind Homer-related synaptic proteins. Metabotropic glutamate receptors function as receptors for glutamate. The activity of this receptor is mediated by a G-protein that activates a phosphatidylinositol-calcium second messenger system. The Homer proteins form a physical tether linking mGluRs with the inositol trisphosphate receptors (IP3R) that appears to be due to the proline-rich Homer ligand (PPXXFr). Activation of PI turnover triggers intracellular calcium release []. Metabotropic glutamate receptor (MGluR) function is altered in the mouse model of human Fragile X syndrome mental retardation, a disorder caused by loss of function mutations in the Fragile X mental retardation gene Fmr1. Homer 3 (and to a lesser extent Homer 1b/c) has been shown to form a multimeric complex with mGlu1a and the IP3 receptor, indicating that Homers may play a role in the localisation of receptors to their signalling partners []. ; PDB: 1DDV_B.
Probab=13.68 E-value=62 Score=25.53 Aligned_cols=13 Identities=46% Similarity=0.639 Sum_probs=0.0
Q ss_pred hhhhhccchHHHH
Q psy17914 448 ITRVSLRDYKQIA 460 (469)
Q Consensus 448 ~~~v~~~~~~~~~ 460 (469)
++++.+|||||-.
T Consensus 36 Y~~~ilrdy~qSS 48 (51)
T PF10606_consen 36 YTSLILRDYSQSS 48 (51)
T ss_dssp -------------
T ss_pred hhHHHHhhccccc
Confidence 4677888888843
Done!