Query psy17914
Match_columns 469
No_of_seqs 346 out of 677
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 17:22:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hb3_B Cytochrome C oxidase su 10.6 3E+02 0.01 27.2 5.2 8 116-123 104-111 (298)
2 2hac_A T-cell surface glycopro 8.2 1.4E+02 0.0049 20.6 1.3 18 287-304 8-25 (33)
3 2gsm_B Cytochrome C oxidase su 8.1 5.1E+02 0.017 24.9 5.7 8 116-123 73-80 (262)
4 3iv4_A Putative oxidoreductase 7.3 2.2E+02 0.0075 24.1 2.4 20 380-400 81-100 (112)
5 1v54_B Cytochrome C oxidase po 5.9 5.6E+02 0.019 24.0 4.7 8 116-123 59-66 (227)
6 4hkr_A Calcium release-activat 3.2 7.5E+02 0.026 23.5 3.1 20 116-135 110-129 (214)
7 1rh5_A Preprotein translocase 2.5 1.1E+03 0.039 24.2 4.0 36 433-468 319-354 (436)
8 2yev_B Cytochrome C oxidase su 3.3 3.8E+02 0.013 26.4 0.0 8 116-123 81-88 (337)
9 1k8b_A EIF-2-beta, probable tr 2.3 6.3E+02 0.022 18.6 1.1 14 451-464 9-22 (52)
10 1afo_A Glycophorin A; integral 2.0 1.2E+03 0.04 16.7 2.1 18 289-306 16-33 (40)
No 1
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=10.59 E-value=3e+02 Score=27.25 Aligned_cols=8 Identities=38% Similarity=0.875 Sum_probs=6.8
Q ss_pred CchhhhHH
Q psy17914 116 SDPTVLWT 123 (469)
Q Consensus 116 ~~~eiLwt 123 (469)
..+|+.|+
T Consensus 104 ~~LEiiWT 111 (298)
T 3hb3_B 104 TPIEVIWT 111 (298)
T ss_dssp HHHHHHHH
T ss_pred ceeehhhH
Confidence 57899998
No 2
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=8.23 E-value=1.4e+02 Score=20.63 Aligned_cols=18 Identities=44% Similarity=0.606 Sum_probs=15.8
Q ss_pred ccchhhhHhHHHHHHHhh
Q psy17914 287 LDLIAIVAGVVQTALYCD 304 (469)
Q Consensus 287 ~~~~~~~~~~~qt~~~~d 304 (469)
+|-+.++-|+|=|+|||-
T Consensus 8 LDgiL~iYgii~T~Ly~R 25 (33)
T 2hac_A 8 LDGILFIYGVILTALFLR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 688899999999999973
No 3
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=8.08 E-value=5.1e+02 Score=24.88 Aligned_cols=8 Identities=38% Similarity=0.738 Sum_probs=6.8
Q ss_pred CchhhhHH
Q psy17914 116 SDPTVLWT 123 (469)
Q Consensus 116 ~~~eiLwt 123 (469)
..+|+.||
T Consensus 73 ~~lEiiWT 80 (262)
T 2gsm_B 73 SPLEIAWT 80 (262)
T ss_dssp HHHHHHHH
T ss_pred ceeeeehh
Confidence 57899998
No 4
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=7.33 E-value=2.2e+02 Score=24.14 Aligned_cols=20 Identities=5% Similarity=-0.238 Sum_probs=17.0
Q ss_pred ccceeeeeeecCceeeeehhh
Q psy17914 380 PPSTVTSSICTSLEVSLQTRV 400 (469)
Q Consensus 380 ~lpQl~m~~k~g~~~~~tsh~ 400 (469)
-.||++.+ |.|++.-.+||.
T Consensus 81 ~sPq~il~-k~G~~v~~~SH~ 100 (112)
T 3iv4_A 81 ESPQAFYF-VNGEMVWNRDHG 100 (112)
T ss_dssp CSSEEEEE-ETTEEEEEEEGG
T ss_pred CCCeEEEE-ECCEEEEEeecc
Confidence 35999998 589999999996
No 5
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=5.92 E-value=5.6e+02 Score=24.01 Aligned_cols=8 Identities=25% Similarity=0.854 Sum_probs=6.6
Q ss_pred CchhhhHH
Q psy17914 116 SDPTVLWT 123 (469)
Q Consensus 116 ~~~eiLwt 123 (469)
..+|+.|+
T Consensus 59 ~~lEiiWT 66 (227)
T 1v54_B 59 QEVETIWT 66 (227)
T ss_dssp TTHHHHHH
T ss_pred ceeEEeee
Confidence 46799998
No 6
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=3.17 E-value=7.5e+02 Score=23.54 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=13.7
Q ss_pred CchhhhHHHHhhhhHhHhhh
Q psy17914 116 SDPTVLWTFSIYLESVAILP 135 (469)
Q Consensus 116 ~~~eiLwtFSi~LEsvAILP 135 (469)
..+|..|.||-.+.-...|.
T Consensus 110 ~yIE~AW~fST~lGi~LFL~ 129 (214)
T 4hkr_A 110 WYIETAWAFSTLLGLILFLL 129 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56899999987665544333
No 7
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=2.54 E-value=1.1e+03 Score=24.16 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=22.2
Q ss_pred HHHHHHhhhhhhhhhhhhhhccchHHHHhhhhhcCC
Q psy17914 433 GVVQTALYCDFFYLYITRVSLRDYKQIADQLSLAGG 468 (469)
Q Consensus 433 ~~vq~~l~~DF~y~Y~~~v~~~~~~~~~~~~~~~~~ 468 (469)
..+=.++.+=||=+.++.+..=|-|++||||...||
T Consensus 319 y~~~~~~lii~Fs~fy~~is~~np~diA~~Lkk~G~ 354 (436)
T 1rh5_A 319 YMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGM 354 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 333344455566666778878899999999998886
No 8
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=3.33 E-value=3.8e+02 Score=26.37 Aligned_cols=8 Identities=38% Similarity=0.821 Sum_probs=6.5
Q ss_pred CchhhhHH
Q psy17914 116 SDPTVLWT 123 (469)
Q Consensus 116 ~~~eiLwt 123 (469)
..+|+.|+
T Consensus 81 ~~lE~~wt 88 (337)
T 2yev_B 81 DRLEVVWT 88 (337)
Confidence 56799998
No 9
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=2.26 E-value=6.3e+02 Score=18.63 Aligned_cols=14 Identities=14% Similarity=0.610 Sum_probs=10.9
Q ss_pred hhccchHHHHhhhh
Q psy17914 451 VSLRDYKQIADQLS 464 (469)
Q Consensus 451 v~~~~~~~~~~~~~ 464 (469)
-..+|.++||+.|.
T Consensus 9 Tvi~Nf~~Ia~~L~ 22 (52)
T 1k8b_A 9 TIIRNFRELAKAVN 22 (52)
T ss_dssp EEECCHHHHHHHHH
T ss_pred EEEECHHHHHHHHC
Confidence 34679999999875
No 10
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=1.96 E-value=1.2e+03 Score=16.68 Aligned_cols=18 Identities=28% Similarity=0.528 Sum_probs=14.4
Q ss_pred chhhhHhHHHHHHHhhhh
Q psy17914 289 LIAIVAGVVQTALYCDFF 306 (469)
Q Consensus 289 ~~~~~~~~~qt~~~~df~ 306 (469)
..+..||++=|.|..+++
T Consensus 16 I~~vmaGiIG~IllI~y~ 33 (40)
T 1afo_A 16 IFGVMAGVIGTILLISYG 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356789999999988765
Done!