Query psy17914
Match_columns 469
No_of_seqs 346 out of 677
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 17:22:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17914.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17914hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ehbb2 f.17.2.1 (B:1-107) Bac 53.2 9 0.00066 30.3 5.2 47 74-123 34-82 (107)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 43.9 15 0.0011 28.4 5.0 47 74-123 28-76 (100)
3 d1v54b2 f.17.2.1 (B:1-90) Mito 21.0 1E+02 0.0076 23.0 6.3 44 74-123 23-66 (90)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 6.8 94 0.0069 23.2 1.8 8 116-123 60-67 (91)
5 d1k8ba_ d.241.1.1 (A:) Transla 3.8 1.3E+02 0.0091 20.7 0.6 14 451-464 9-22 (52)
6 d1rh5a_ f.41.1.1 (A:) Preprote 2.3 4.1E+02 0.03 24.7 2.7 35 433-468 319-353 (422)
7 d3cx5i1 f.23.14.1 (I:4-58) Sub 2.3 2.2E+02 0.016 19.9 0.5 8 73-80 2-9 (55)
8 d1x41a1 a.4.1.1 (A:8-54) Trans 2.0 4.4E+02 0.032 16.8 1.7 12 452-463 20-31 (47)
9 d1ppjw_ f.23.14.1 (W:) Subunit 1.8 5.7E+02 0.041 18.0 2.1 20 73-92 8-29 (62)
10 d1a04a1 a.4.6.2 (A:150-216) Ni 1.8 3.9E+02 0.029 18.0 1.2 13 454-466 22-34 (67)
No 1
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=53.20 E-value=9 Score=30.25 Aligned_cols=47 Identities=15% Similarity=0.295 Sum_probs=24.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhh--cccccccCCCCccccccCCCchhhhHH
Q psy17914 74 VYNSFMKIVFIAASYGTVYLMYI--KFKATYDHNHDTFRGLLSESDPTVLWT 123 (469)
Q Consensus 74 lYNTiMKivfI~~s~~liylm~~--k~k~Tyd~~~DtFr~~~~~~~~eiLwt 123 (469)
++|.+|-+..+....+...+++. |+|++-...+..+++ +..+|+.||
T Consensus 34 lh~~v~~i~~~I~~~V~~~~~~~~~~~r~~~~~~~~~~~~---n~~lEi~WT 82 (107)
T d3ehbb2 34 LDHFVLYIITAVTIFVCLLLLICIVRFNRRANPVPARFTH---NTPIEVIWT 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSBTTTSSSCCCCCC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccccccc---chHHHHHHH
Confidence 45666666555555444444433 444332233333332 267899998
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=43.94 E-value=15 Score=28.42 Aligned_cols=47 Identities=17% Similarity=0.363 Sum_probs=22.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhh--cccccccCCCCccccccCCCchhhhHH
Q psy17914 74 VYNSFMKIVFIAASYGTVYLMYI--KFKATYDHNHDTFRGLLSESDPTVLWT 123 (469)
Q Consensus 74 lYNTiMKivfI~~s~~liylm~~--k~k~Tyd~~~DtFr~~~~~~~~eiLwt 123 (469)
++|.+|-+..+....+...+++. |+|+.=...++.+++ +..+|+.||
T Consensus 28 l~~~v~~i~~~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~---n~~LEiiWT 76 (100)
T d3dtub2 28 LDGFILVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTH---NSPLEIAWT 76 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTTCCSCCCCCC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccC---cchHHHHHH
Confidence 45666666555554444444444 333211122222322 257899998
No 3
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.01 E-value=1e+02 Score=23.00 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=21.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcccccccCCCCccccccCCCchhhhHH
Q psy17914 74 VYNSFMKIVFIAASYGTVYLMYIKFKATYDHNHDTFRGLLSESDPTVLWT 123 (469)
Q Consensus 74 lYNTiMKivfI~~s~~liylm~~k~k~Tyd~~~DtFr~~~~~~~~eiLwt 123 (469)
+.|.+|-++.+....+...+.....++...++ ..+ +..+|+.||
T Consensus 23 fHd~~m~i~~~I~~~V~~~~~~~~~~~~~~~~--~~~----~~~lEiiWT 66 (90)
T d1v54b2 23 FHDHTLMIVFLISSLVLYIISLMLTTKLTHTS--TMD----AQEVETIWT 66 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCS--CCC----CTTHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhccccccc--ccc----ccchhhHHH
Confidence 45666666555555444333333222211111 111 145799999
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.82 E-value=94 Score=23.23 Aligned_cols=8 Identities=0% Similarity=-0.192 Sum_probs=6.8
Q ss_pred CchhhhHH
Q psy17914 116 SDPTVLWT 123 (469)
Q Consensus 116 ~~~eiLwt 123 (469)
..+|+.|+
T Consensus 60 ~~lEi~Wt 67 (91)
T d1fftb2 60 NKVEAVVW 67 (91)
T ss_dssp SHHHHHTT
T ss_pred ceehhhHH
Confidence 67899998
No 5
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.77 E-value=1.3e+02 Score=20.67 Aligned_cols=14 Identities=14% Similarity=0.610 Sum_probs=11.3
Q ss_pred hhccchHHHHhhhh
Q psy17914 451 VSLRDYKQIADQLS 464 (469)
Q Consensus 451 v~~~~~~~~~~~~~ 464 (469)
-..+|.++|||+|.
T Consensus 9 Tvi~Nf~eI~~~L~ 22 (52)
T d1k8ba_ 9 TIIRNFRELAKAVN 22 (52)
T ss_dssp EEECCHHHHHHHHH
T ss_pred EeeecHHHHHHHhC
Confidence 34689999999885
No 6
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.33 E-value=4.1e+02 Score=24.65 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=19.8
Q ss_pred HHHHHHhhhhhhhhhhhhhhccchHHHHhhhhhcCC
Q psy17914 433 GVVQTALYCDFFYLYITRVSLRDYKQIADQLSLAGG 468 (469)
Q Consensus 433 ~~vq~~l~~DF~y~Y~~~v~~~~~~~~~~~~~~~~~ 468 (469)
.+...++..=|.| +++++..=|-|++||||...||
T Consensus 319 ~i~~~~l~i~Fs~-f~~~~~~~~p~~iAe~lkk~g~ 353 (422)
T d1rh5a_ 319 MIAMIITCVMFGI-FWVETTGLDPKSMAKRIGSLGM 353 (422)
T ss_dssp HHHHHHHHHHHHH-HHHHHHTCSHHHHHHHC-----
T ss_pred HHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHcCC
Confidence 3444444444444 4466777799999999998886
No 7
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.33 E-value=2.2e+02 Score=19.88 Aligned_cols=8 Identities=50% Similarity=1.078 Sum_probs=5.1
Q ss_pred hhhhhhHH
Q psy17914 73 SVYNSFMK 80 (469)
Q Consensus 73 SlYNTiMK 80 (469)
++||++||
T Consensus 2 tiY~~lfr 9 (55)
T d3cx5i1 2 SLYKTFFK 9 (55)
T ss_dssp HHHHHHHT
T ss_pred hHHHHHHH
Confidence 46777666
No 8
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.98 E-value=4.4e+02 Score=16.84 Aligned_cols=12 Identities=17% Similarity=0.648 Sum_probs=9.1
Q ss_pred hccchHHHHhhh
Q psy17914 452 SLRDYKQIADQL 463 (469)
Q Consensus 452 ~~~~~~~~~~~~ 463 (469)
...|.++||+++
T Consensus 20 G~~nW~~Ia~~~ 31 (47)
T d1x41a1 20 GFGNWQDVANQM 31 (47)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCccHHHHHHHc
Confidence 456888888876
No 9
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.80 E-value=5.7e+02 Score=17.98 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=12.3
Q ss_pred hhhhhhHH--HHHHHHHHHHHh
Q psy17914 73 SVYNSFMK--IVFIAASYGTVY 92 (469)
Q Consensus 73 SlYNTiMK--ivfI~~s~~liy 92 (469)
++||+++| .+|++..+.-++
T Consensus 8 ~lYn~lfrRnStf~~tI~~gAf 29 (62)
T d1ppjw_ 8 RLYSLLFRRTSTFALTIVVGAL 29 (62)
T ss_dssp HHHHHHTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHH
Confidence 57888887 455555444444
No 10
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=1.76 E-value=3.9e+02 Score=18.01 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=0.0
Q ss_pred cchHHHHhhhhhc
Q psy17914 454 RDYKQIADQLSLA 466 (469)
Q Consensus 454 ~~~~~~~~~~~~~ 466 (469)
...|+||++|.+.
T Consensus 22 ~s~~eIA~~l~iS 34 (67)
T d1a04a1 22 LPNKMIARRLDIT 34 (67)
T ss_dssp CCHHHHHHHHTCC
T ss_pred CCHHHHHHHHCCC
Done!