RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17914
(469 letters)
>gnl|CDD|144416 pfam00810, ER_lumen_recept, ER lumen protein retaining receptor.
Length = 143
Score = 149 bits (378), Expect = 2e-43
Identities = 82/172 (47%), Positives = 107/172 (62%), Gaps = 33/172 (19%)
Query: 1 ISGKSQFLFAIVYTARYLDLFTSYVSVYNSFMKIVFIAASYGTVYLMYIKFKATYDHNHD 60
+S K+Q L+AIV+ RYLDLF Y+S+YN+ MKI+FI +S T+YLM K+KATYD + D
Sbjct: 5 LSLKTQILYAIVFLTRYLDLFEGYISLYNTIMKILFIVSSVYTIYLMKFKYKATYDRDID 64
Query: 61 TFRYLDLFTSYVSVYNSFMKIVFIAASYGTVYLMYIKFKATYDHNHDTFRGLLSESDPTV 120
TF+ L + + + H+ +F +
Sbjct: 65 TFKIEYLI------------VPCLVLAL-------------IFHHSYSFL--------EI 91
Query: 121 LWTFSIYLESVAILPQLFLVSKTGEAESITSHYLFALGAYRALYLLNWVYRY 172
LWTFSIYLESVAILPQLF++ KTGE E++TSHYLFALG YRALY+LNW+YRY
Sbjct: 92 LWTFSIYLESVAILPQLFMLQKTGEVENLTSHYLFALGLYRALYILNWIYRY 143
Score = 27.9 bits (63), Expect = 6.6
Identities = 12/14 (85%), Positives = 14/14 (100%)
Query: 319 LYRALYLLNWVYRY 332
LYRALY+LNW+YRY
Sbjct: 130 LYRALYILNWIYRY 143
Score = 27.9 bits (63), Expect = 6.6
Identities = 12/14 (85%), Positives = 14/14 (100%)
Query: 406 LYRALYLLNWVYRY 419
LYRALY+LNW+YRY
Sbjct: 130 LYRALYILNWIYRY 143
>gnl|CDD|227523 COG5196, ERD2, ER lumen protein retaining receptor [Intracellular
trafficking and secretion].
Length = 214
Score = 137 bits (347), Expect = 4e-38
Identities = 82/204 (40%), Positives = 112/204 (54%), Gaps = 35/204 (17%)
Query: 1 ISGKSQFLFAIVYTARYLDLFT-SYVSVYNSFMKIVFIAASYGTVYLMYIKFKATYDHNH 59
+S K+QFL+++V+ RYLDLF S+YNS MKI+FI + ++LM K+++TYD
Sbjct: 32 LSLKTQFLYSLVFITRYLDLFDFYARSLYNSLMKILFIGSQVYILFLMRFKYRSTYDKKL 91
Query: 60 DTFRYLDLFTSYVSVYNSFMKIVFIAASYGTVYLMYIKFKATYDHNHDTFRGLLSESDPT 119
DTF L L S + +F +
Sbjct: 92 DTFNILTLLVG------SAVFSLFFTRGG---------------------------TISN 118
Query: 120 VLWTFSIYLESVAILPQLFLVSKTGEAESITSHYLFALGAYRALYLLNWVYRYYSED-YL 178
VLWTFS++LESVAILPQL ++ + GE ES+TSHY+FA+G YRALY+ W+ R +
Sbjct: 119 VLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIPYWILRKVYDIKKT 178
Query: 179 DLIAIVAGVVQTALYCDFFYLYIT 202
IAI AG+VQT LY DFF +Y
Sbjct: 179 GNIAIAAGIVQTLLYLDFFAIYYR 202
Score = 52.9 bits (127), Expect = 6e-08
Identities = 55/181 (30%), Positives = 78/181 (43%), Gaps = 16/181 (8%)
Query: 272 LYLLNWVYRYYSEDYLDLIAIVAGVVQTALYCDFFYLLQTRVVCVITLYRALYLLNWVYR 331
LY L ++ RY LDL A + +L F Q ++ +L+ + YR
Sbjct: 39 LYSLVFITRY-----LDLFDFYARSLYNSLMKILFIGSQVYIL---------FLMRFKYR 84
Query: 332 YYSEDYLDLIAIVAGVVQTALYCDFFYLYITRVKTTWTLLPLWLELFRPPSTVTSSICTS 391
+ LD I+ +V +A++ FF T WT LWLE +
Sbjct: 85 STYDKKLDTFNILTLLVGSAVFSLFFTRGGTISNVLWTF-SLWLESVAILPQLVMLQEAG 143
Query: 392 LEVSLQTRVVCVVTLYRALYLLNWVYRYYSED-YLDLIAIVAGVVQTALYCDFFYLYITR 450
SL + V + LYRALY+ W+ R + IAI AG+VQT LY DFF +Y
Sbjct: 144 ETESLTSHYVFAMGLYRALYIPYWILRKVYDIKKTGNIAIAAGIVQTLLYLDFFAIYYRY 203
Query: 451 V 451
V
Sbjct: 204 V 204
Score = 46.7 bits (111), Expect = 6e-06
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 12/197 (6%)
Query: 127 YLESVAILPQLFLVSKTGEAESITSHYLFAL-GAYRALYLLNWVYRYYSEDYLDLIAIVA 185
+L S+A+L +++ S+ + +L++L R L L ++ R + ++ I +
Sbjct: 12 HLASIAVLIHKIKRTRSCSGLSLKTQFLYSLVFITRYLDLFDFYARSLYNSLMKILFIGS 71
Query: 186 GVVQTALYCDFFYLYITRGKPVDSCGLCHNIVPGPLYLLNWVYRYYSED-------YLDL 238
V L+ F T K +D+ + +V ++ L + + +L+
Sbjct: 72 QVY--ILFLMRFKYRSTYDKKLDTFNILTLLVGSAVFSLFFTRGGTISNVLWTFSLWLES 129
Query: 239 IAIVAGVVQTALYCDFFYLLQTRVVCVITLYRVLYLLNWVYRYYSED-YLDLIAIVAGVV 297
+AI+ +V + L + V + LYR LY+ W+ R + IAI AG+V
Sbjct: 130 VAILPQLVMLQEAGET-ESLTSHYVFAMGLYRALYIPYWILRKVYDIKKTGNIAIAAGIV 188
Query: 298 QTALYCDFFYLLQTRVV 314
QT LY DFF + V
Sbjct: 189 QTLLYLDFFAIYYRYVF 205
>gnl|CDD|227586 COG5261, IQG1, Protein involved in regulation of cellular
morphogenesis/cytokinesis [Cell division and chromosome
partitioning / Signal transduction mechanisms].
Length = 1054
Score = 31.8 bits (72), Expect = 0.88
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 7/142 (4%)
Query: 20 LFTSYVSVYNSFMKIVFIAASYGTVY-LMYIKFKATYDHNHDTFRYLD-LFTSYVSVYNS 77
LF S S G + +++F + T D + V +
Sbjct: 591 LFPSISDSRCLRTICFAEIDSLGLIGGFFFLRFVNEALVSPQTSMLKDSCPSDNVRKLAT 650
Query: 78 FMKI---VFIAASYGTVYL-MYIKFKATYDHNHDTFRGLLSESDPTVLWTFSIYLESVAI 133
KI VF S + + K + H+ R L + D + F Y++ V
Sbjct: 651 LSKILQSVFEITSSDKFDVPLQPFLKEYKEKVHNLLRKLGNVGDFEEYFEFDQYIDLVKK 710
Query: 134 LPQL-FLVSKTGEAESITSHYL 154
L +LV++ I YL
Sbjct: 711 SRALEYLVNEIYLTHEIIIEYL 732
>gnl|CDD|222538 pfam14094, DUF4272, Domain of unknown function (DUF4272). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 221 and
399 amino acids in length.
Length = 209
Score = 28.8 bits (65), Expect = 4.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 407 YRALYLLNWVYRYYSE-DYLDLIAIVAGVVQTALYCDFFYLYITRVSLRDYKQIADQLSL 465
Y AL++L W E + D I V +++ D F +I R LR ++I D L L
Sbjct: 101 YEALWVLLWALGLVDELPFPDEICDVPLLIRILKDVDTFGEFIARAKLRSIEEILDALDL 160
>gnl|CDD|237791 PRK14701, PRK14701, reverse gyrase; Provisional.
Length = 1638
Score = 29.5 bits (66), Expect = 5.0
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 89 GTVYLMYIKFKATYDHNHDTFRGLLSESDPTVLWTFSIYLESVAILPQLFLVSKTGEAES 148
G L++ K T HN R +L+ VL +YL S+ IL L + G
Sbjct: 1181 GCFSLLFDK--KTGKHN---LRIVLTSKRRDVLEKLGVYLYSIGILNTLHRDERNGVWTL 1235
Query: 149 ITS 151
I S
Sbjct: 1236 IIS 1238
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 28.6 bits (64), Expect = 8.7
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 218 PGPLYLLNWVYRYYSEDYLDLIAIVAGVVQTALYCDFF 255
PG +LLN +Y ED++ ++A+V V T + D F
Sbjct: 73 PGATHLLNGLYDA-KEDHVPVLALVGQVPTTGMNMDTF 109
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.144 0.450
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,791,463
Number of extensions: 2482125
Number of successful extensions: 3049
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3017
Number of HSP's successfully gapped: 58
Length of query: 469
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 369
Effective length of database: 6,502,202
Effective search space: 2399312538
Effective search space used: 2399312538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 61 (27.2 bits)