RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17914
(469 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.4 bits (177), Expect = 1e-13
Identities = 84/475 (17%), Positives = 153/475 (32%), Gaps = 153/475 (32%)
Query: 13 YTARYLDLFTSYVSVYNSFM--KIVFIAASYGTVYLMYIKFKATYDHNHDTFRYLDLFTS 70
Y+ R L L S+ S+ + + F AS + +F + F D T+
Sbjct: 4 YSTRPLTL--SHGSLEHVLLVPTASFFIAS-----QLQEQFNKILPEPTEGFAADDEPTT 56
Query: 71 YVSVYNSFMKIVFIA--------ASYGTVYLMYIK-FKATY-DHN--HDTFRGLLSESDP 118
+ F+ +++ + V + + F+ Y + N H LL E+D
Sbjct: 57 PAELVGKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 119 TVLWTFSI---YLESVAILPQ---------LFLVSKTGEAESITSHYLFAL--G-----A 159
T++ T + Y+ + + + LF G A+ L A+ G
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ------LVAIFGGQGNTDD 168
Query: 160 Y----RALYLLNWVYRYYSEDYLDLIA-IVAGVVQTALYCDFFYLYITRGKPVDSCGLCH 214
Y R LY Y D + A ++ +++T L + + T+G ++
Sbjct: 169 YFEELRDLYQ---TYHVLVGDLIKFSAETLSELIRTTLDAEKVF---TQG--LNILEWLE 220
Query: 215 NIVPGPLYLLNWVYRYYSEDYLDLIAI---VAGVVQTALYCDFFYLLQTRVVCVITLYRV 271
N P +DYL I I + GV+Q A Y V + +
Sbjct: 221 NPSNTP-----------DKDYLLSIPISCPLIGVIQLAHYV---------VTAKLLGFTP 260
Query: 272 LYLLNWVYRYYSEDYLDLIAIVAGVVQTALYC------DFFYLLQTRVVCVITLYRALYL 325
L +++ G+V TA+ + F++ + +A+ +
Sbjct: 261 GELRSYLK--------GATGHSQGLV-TAVAIAETDSWESFFVS---------VRKAITV 302
Query: 326 LNWV----YRYYSEDYLDLIAI----------------VAGVVQTALYCDFFYLYITRVK 365
L ++ Y Y L + ++ + Q + V
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV--------QDYVN 354
Query: 366 TTWTLLPLWLELFRPPSTVTSSICTSLEVSLQ-TRVVCVVT-LYRALYLLNWVYR 418
T + LP V E+SL VV+ ++LY LN R
Sbjct: 355 KTNSHLP-------AGKQV--------EISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Score = 37.0 bits (85), Expect = 0.017
Identities = 41/220 (18%), Positives = 64/220 (29%), Gaps = 63/220 (28%)
Query: 274 LLNWVYRYYSEDYL---DLIAIVAGVVQTALYCDFFYLLQTRVVCVITL----YRALYLL 326
+LN + YL D+ A+ A ++Q T +V L A +
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLLQEN---------DTTLVKTKELIKNYITARIMA 133
Query: 327 NWVYRYYSEDYLDLIAIVAGVVQTALYCDF-------FY------LYITRVKTTWTLLPL 373
+ S L A+ G L F Y LY T
Sbjct: 134 KRPFDKKSNSAL-FRAVGEG--NAQLVAIFGGQGNTDDYFEELRDLYQT----------- 179
Query: 374 WLELFRPPSTVTSSICTS---LEVSLQTRVVCVVTLYRALYLLNWVY---RYYSEDYLDL 427
V I S L ++T + + L +L W+ +DYL
Sbjct: 180 ------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 428 IAI---VAGVVQTALYCDFFYLYITRVSLRDYKQIADQLS 464
I I + GV+Q A Y ++ ++ L
Sbjct: 234 IPISCPLIGVIQLAHYVVT-----AKLLGFTPGELRSYLK 268
Score = 35.8 bits (82), Expect = 0.041
Identities = 35/197 (17%), Positives = 56/197 (28%), Gaps = 59/197 (29%)
Query: 45 YLMYIKFKATYD----HNHDT--FRYLDLFTSY---VSVYNSFMKIVFIAASYGTVYLMY 95
Y + ++ H DT F LD+ + ++++ K I +Y
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY-----SA 1690
Query: 96 IKFKATYDHNHDTFRGLLSESDPTVLWTFSIYLESVAIL-------PQLFLVSKT----- 143
+ F+ D + E + T + +L P L L+ K
Sbjct: 1691 MIFETIVDGK-LKTEKIFKEINEHS--TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 144 GEAESITSHYLFA---LGAYRALYLLNWVYRYYSEDYLDLIAIVAGVVQTALYCDFFYLY 200
I + FA LG Y AL A +A V+ +
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAAL------------------ASLADVMSIE---SLVEVV 1786
Query: 201 ITRGK------PVDSCG 211
RG P D G
Sbjct: 1787 FYRGMTMQVAVPRDELG 1803
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.003
Identities = 60/408 (14%), Positives = 116/408 (28%), Gaps = 129/408 (31%)
Query: 12 VYTARYLDLF---------TSYVSVYNSFMKIVFIAASYGTVYLMYIKFKATYDHNHDTF 62
V A+ + F T + V + F++A+ T + DH+ T
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTD------FLSAATTTHISL--------DHHSMTL 298
Query: 63 ---RYLDLFTSYVSV----------YNSFMKIVFIAASYGTVYLMYIKFKATYDH----N 105
L Y+ + ++ IA AT+D+ N
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-------SIRDGLATWDNWKHVN 351
Query: 106 HDTFRGLLSES----DPTVL----WTFSIYLESVAILPQLFLV----SKTGEAESITSHY 153
D ++ S +P S++ S I L + + + +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK- 410
Query: 154 LFALGAYRALYLLNWVYRYYSED-YLDLIAIVAGVVQTALYCDFFYLY-ITRGKPVDSCG 211
L Y + YL+L + + AL+ Y I + D
Sbjct: 411 ---LHKYSLVEKQPKESTISIPSIYLELKVKLEN--EYALHRSIVDHYNIPKTFDSDDL- 464
Query: 212 LCHNIVPGPLYLLNWVYRYYSEDYLDLIAIVAGVVQTALYCDFFYLLQTRVVCVITLYRV 271
P YL + Y + I +L +TL+R+
Sbjct: 465 -------IPPYLDQYFYSH--------IG--------------HHLKNIEHPERMTLFRM 495
Query: 272 LYL-LNWV---YRYYSEDYLDLIAIVAGVVQTALYCDFFYLLQTRVVCVITLYRALY--- 324
++L ++ R+ S + +I+ + Q Y + I Y
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-----------ICDNDPKYERL 544
Query: 325 ---LLNWVYRY----YSEDYLDLIAIVAGVVQTALYCDFFYLYITRVK 365
+L+++ + Y DL ++ AL + ++ K
Sbjct: 545 VNAILDFLPKIEENLICSKYTDL-------LRIALMAEDEAIFEEAHK 585
Score = 36.4 bits (83), Expect = 0.022
Identities = 49/317 (15%), Positives = 93/317 (29%), Gaps = 81/317 (25%)
Query: 177 YLDLIAIVAGVVQTALYCDFFYLYITRG-KPVDSCGLCHNIVPGP-----LYLLNWVYRY 230
Y D+++ V + A +F + K + S +I+ L W
Sbjct: 18 YKDILS----VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 231 YSEDYLDLIAIVAGVVQTALYCDFFYLLQTRVVCVITLYRVLYLLNWVYRYYSEDYLDLI 290
E+ +V V+ L ++ ++ +
Sbjct: 74 KQEE------MVQKFVEEVLRINY---------------------KFLMSPIKTEQRQPS 106
Query: 291 AIVAGVVQT--ALYCD---FFYLLQTRVVCVITLYRALYLLNWVYRYYSEDYLD------ 339
+ ++ LY D F +R+ + L +AL L +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR------PAKNVLIDGVLG 160
Query: 340 -----LIAIVA--GVVQTALYCDFFYLYITRVKTTWTLLPLWLELFRPPSTVTSSICTSL 392
+ V VQ + F+L + + T+L + +L + + +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY---QIDPNWTSRS 217
Query: 393 EVSLQTRVVCVVTLYRALYLLNWVYRYYSEDYLDLIAIVAGVVQTALYCDFF-----YLY 447
+ S ++ LL + Y L L+ VQ A + F L
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKS--KPYENCLLVLLN-----VQNAKAWNAFNLSCKILL 270
Query: 448 ITRVSLRDYKQIADQLS 464
TR +KQ+ D LS
Sbjct: 271 TTR-----FKQVTDFLS 282
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.144 0.450
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,664,483
Number of extensions: 475924
Number of successful extensions: 1078
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1060
Number of HSP's successfully gapped: 8
Length of query: 469
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 372
Effective length of database: 3,993,456
Effective search space: 1485565632
Effective search space used: 1485565632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (27.0 bits)