RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17914
         (469 letters)



>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima
           [TaxId: 2336]}
          Length = 404

 Score = 26.6 bits (58), Expect = 7.5
 Identities = 4/24 (16%), Positives = 10/24 (41%)

Query: 219 GPLYLLNWVYRYYSEDYLDLIAIV 242
                  W++   +E Y+ L+ + 
Sbjct: 22  DHFLEERWLFEAITETYIPLLMMF 45


>d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus
           subtilis [TaxId: 1423]}
          Length = 344

 Score = 26.0 bits (56), Expect = 9.9
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 7   FLFAIVYTARYLDLFTSYVSVYNSFMKIVFIAASYGTVYLMYIKFKATYDH------NHD 60
              +    A Y +      S Y   ++      + G   + +     + D       +HD
Sbjct: 207 LQDSASRDAAYANYMDVTASNYGHSIRSALKNRNLGVSNISHYASDVSADKLVTWVESHD 266

Query: 61  TFRYLDLFTSYVSVYNSFMKIVFIAA-SYGTVYLMY 95
           T+   D  ++++S  +  +    IA+ S  T     
Sbjct: 267 TYANDDEESTWMSDDDIRLGWAVIASRSGSTPLFFS 302


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.144    0.450 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,875,345
Number of extensions: 90569
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 10
Length of query: 469
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 380
Effective length of database: 1,185,626
Effective search space: 450537880
Effective search space used: 450537880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.3 bits)