BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17915
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 200/274 (72%), Positives = 226/274 (82%), Gaps = 1/274 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 287 RREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSDTVV 346
R+E+E+CDC+QGFQ+ KIREEYPDR++N FSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYNA LS+ L+E +DET+CIDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
RFPGQLNADLRKLAVNMVPFPRLHFFM G APL
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 274
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 103/137 (75%), Positives = 119/137 (86%), Gaps = 1/137 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTH 136
R+E+E+CDC+QGFQ+TH
Sbjct: 121 RKESESCDCLQGFQLTH 137
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 200/274 (72%), Positives = 226/274 (82%), Gaps = 1/274 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 287 RREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSDTVV 346
R+E+E+CDC+QGFQ+ KIREEYPDR++N FSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYNA LS+ L+E +DET+CIDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
RFPGQLNADLRKLAVNMVPFPRLHFFM G APL
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 274
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 103/137 (75%), Positives = 119/137 (86%), Gaps = 1/137 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTH 136
R+E+E+CDC+QGFQ+TH
Sbjct: 121 RKESESCDCLQGFQLTH 137
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 434 bits (1116), Expect = e-122, Method: Compositional matrix adjust.
Identities = 200/274 (72%), Positives = 226/274 (82%), Gaps = 1/274 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 287 RREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSDTVV 346
R+E+E+CDC+QGFQ+ KIREEYPDR++N FSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYNA LS+ L+E +DET+CIDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
RFPGQLNADLRKLAVNMVPFPRLHFFM G APL
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 274
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 103/137 (75%), Positives = 119/137 (86%), Gaps = 1/137 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTH 136
R+E+E+CDC+QGFQ+TH
Sbjct: 121 RKESESCDCLQGFQLTH 137
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 433 bits (1114), Expect = e-122, Method: Compositional matrix adjust.
Identities = 199/274 (72%), Positives = 226/274 (82%), Gaps = 1/274 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 287 RREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSDTVV 346
R+E+E+CDC+QGFQ+ KIREEYPDR++N FSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYNA LS+ L+E +DET+CIDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
RFPGQLNADLRKLAVNMVPFPRLHFFM G APL
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 274
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 103/137 (75%), Positives = 119/137 (86%), Gaps = 1/137 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTH 136
R+E+E+CDC+QGFQ+TH
Sbjct: 121 RKESESCDCLQGFQLTH 137
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 199/274 (72%), Positives = 225/274 (82%), Gaps = 1/274 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 287 RREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSDTVV 346
R+E+E+CDC+QGFQ+ KIREEYPDR++N FSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYNA LS+ L+E +DET+ IDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
RFPGQLNADLRKLAVNMVPFPRLHFFM G APL
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 274
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 103/137 (75%), Positives = 119/137 (86%), Gaps = 1/137 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTH 136
R+E+E+CDC+QGFQ+TH
Sbjct: 121 RKESESCDCLQGFQLTH 137
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 198/274 (72%), Positives = 225/274 (82%), Gaps = 1/274 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 287 RREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSDTVV 346
R+E+E+CDC+QGFQ+ KIREEYPDR++N FSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYNA LS+ L+E +DET+ IDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
RFPGQLNADLRKLAVNMVPFPRLHFFM G APL
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 274
Score = 233 bits (594), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 103/137 (75%), Positives = 119/137 (86%), Gaps = 1/137 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTH 136
R+E+E+CDC+QGFQ+TH
Sbjct: 121 RKESESCDCLQGFQLTH 137
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 198/274 (72%), Positives = 225/274 (82%), Gaps = 1/274 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 287 RREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSDTVV 346
R+E+E+CDC+QGFQ+ KIREEYPDR++N FSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYNA LS+ L+E +DET+ IDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
RFPGQLNADLRKLAVNMVPFPRLHFFM G APL
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 274
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 103/137 (75%), Positives = 119/137 (86%), Gaps = 1/137 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTH 136
R+E+E+CDC+QGFQ+TH
Sbjct: 121 RKESESCDCLQGFQLTH 137
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 198/274 (72%), Positives = 225/274 (82%), Gaps = 1/274 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 287 RREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSDTVV 346
R+E+E+CDC+QGFQ+ KIREEYPDR++N FSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYNA LS+ L+E +DET+ IDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
RFPGQLNADLRKLAVNMVPFPRLHFFM G APL
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 274
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 103/137 (75%), Positives = 119/137 (86%), Gaps = 1/137 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTH 136
R+E+E+CDC+QGFQ+TH
Sbjct: 121 RKESESCDCLQGFQLTH 137
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 198/274 (72%), Positives = 225/274 (82%), Gaps = 1/274 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 287 RREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSDTVV 346
R+E+E+CDC+QGFQ+ KIREEYPDR++N FSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYNA LS+ L+E +DET+ IDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
RFPGQLNADLRKLAVNMVPFPRLHFFM G APL
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 274
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 103/137 (75%), Positives = 119/137 (86%), Gaps = 1/137 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTH 136
R+E+E+CDC+QGFQ+TH
Sbjct: 121 RKESESCDCLQGFQLTH 137
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust.
Identities = 178/274 (64%), Positives = 207/274 (75%), Gaps = 1/274 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
MREI+HI GQCGNQ G FWE I EHGL+ G Y G D+Q ER+ VY+NEA G ++
Sbjct: 1 MREIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PR+I VDLEPGT+DAVR+ G +FRPDN++ GQS A N WAKGHYTEG ELVD+VMD+
Sbjct: 61 PRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVI 120
Query: 287 RREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSDTVV 346
RREAE CD +QGFQ+ KIREE+PDRM+ FSV+PSPK SDT V
Sbjct: 121 RREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKRSDTRV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYNA LS+ L+E SDETFCIDNEALYDIC R+LKLN PSY DLN+LVS+ M G+TT L
Sbjct: 181 EPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTTSL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
R+PGQLN+DLRKLAVN+VPFPRLHFFM G APL
Sbjct: 241 RYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLT 274
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 88/137 (64%), Positives = 105/137 (76%), Gaps = 1/137 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREI+HI GQCGNQ G FWE I EHGL+ G Y G D+Q ER+ VY+NEA G ++
Sbjct: 1 MREIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PR+I VDLEPGT+DAVR+ G +FRPDN++ GQS A N WAKGHYTEG ELVD+VMD+
Sbjct: 61 PRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVI 120
Query: 120 RREAENCDCMQGFQVTH 136
RREAE CD +QGFQ+TH
Sbjct: 121 RREAEGCDSLQGFQITH 137
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 224 bits (570), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 164/275 (59%), Gaps = 5/275 (1%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRY-EGTSDLQLERIQVYYNEAQGG-Y 225
+REI+ I VGQCGNQ FW +EHGL E G EG++ ++V++++ + G Y
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKY 60
Query: 226 IPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDL 285
+PRA+LVDLEPG + + G ++F + + GAANNWA+G+ EG +++D +M++
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNV 120
Query: 286 TRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSDTV 345
E +QGF + ++R+ YP + I FSVVPSP +SD+
Sbjct: 121 IDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSA 180
Query: 346 VEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLN-SPSYRDLNHLVSATMCGITT 404
VEPYNAIL+L +++ +D +DNEAL+ I KLN SP+Y DLN++++ + +T
Sbjct: 181 VEPYNAILTLQRILDNADGAVLLDNEALFRIA--KAKLNRSPNYMDLNNIIALIVSSVTA 238
Query: 405 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPL 439
LRFPG+LN DL + N+VPFP HF + AP+
Sbjct: 239 SLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPM 273
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 84/138 (60%), Gaps = 2/138 (1%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRY-EGTSDLQLERIQVYYNEAQGG-Y 58
+REI+ I VGQCGNQ FW +EHGL E G EG++ ++V++++ + G Y
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKY 60
Query: 59 IPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDL 118
+PRA+LVDLEPG + + G ++F + + GAANNWA+G+ EG +++D +M++
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNV 120
Query: 119 TRREAENCDCMQGFQVTH 136
E +QGF +TH
Sbjct: 121 IDSAVEKTKGLQGFLMTH 138
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 221 bits (563), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 111/278 (39%), Positives = 163/278 (58%), Gaps = 7/278 (2%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 223
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 224 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 282
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 283 MDLTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVS 342
+D R+ A+ C +QGF V ++ +Y + FS+ P+P+VS
Sbjct: 119 LDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVS 178
Query: 343 DTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+S + I
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSI 238
Query: 403 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
T LRF G LN DL + N+VP+PR+HF ++ AP++
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 56
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 57 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 115
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 116 MDLTRREAENCDCMQGFQVTH 136
+D R+ A+ C +QGF V H
Sbjct: 119 LDRIRKLADQCTGLQGFLVFH 139
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 221 bits (563), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 111/278 (39%), Positives = 163/278 (58%), Gaps = 7/278 (2%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 223
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 224 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 282
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 283 MDLTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVS 342
+D R+ A+ C +QGF V ++ +Y + FS+ P+P+VS
Sbjct: 119 LDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVS 178
Query: 343 DTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+S + I
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSI 238
Query: 403 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
T LRF G LN DL + N+VP+PR+HF ++ AP++
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 56
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 57 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 115
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 116 MDLTRREAENCDCMQGFQVTH 136
+D R+ A+ C +QGF V H
Sbjct: 119 LDRIRKLADQCTGLQGFLVFH 139
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 221 bits (563), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 111/278 (39%), Positives = 163/278 (58%), Gaps = 7/278 (2%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 223
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 224 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 282
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 283 MDLTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVS 342
+D R+ A+ C +QGF V ++ +Y + FS+ P+P+VS
Sbjct: 119 LDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVS 178
Query: 343 DTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+S + I
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSI 238
Query: 403 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
T LRF G LN DL + N+VP+PR+HF ++ AP++
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 56
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 57 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 115
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 116 MDLTRREAENCDCMQGFQVTH 136
+D R+ A+ C +QGF V H
Sbjct: 119 LDRIRKLADQCTGLQGFLVFH 139
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 220 bits (561), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 111/278 (39%), Positives = 163/278 (58%), Gaps = 7/278 (2%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 223
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 224 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 282
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLV 118
Query: 283 MDLTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVS 342
+D R+ A+ C +QGF V ++ +Y + FS+ P+P+VS
Sbjct: 119 LDRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVS 178
Query: 343 DTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+S + I
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSI 238
Query: 403 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
T LRF G LN DL + N+VP+PR+HF ++ AP++
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 56
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 57 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 115
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLV 118
Query: 116 MDLTRREAENCDCMQGFQVTH 136
+D R+ A+ C +QGF V H
Sbjct: 119 LDRVRKLADQCTGLQGFLVFH 139
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 165/277 (59%), Gaps = 4/277 (1%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYE-GTSDLQ--LERIQVYYNEA-QG 223
MRE++ I VGQ G Q G WE S EHG+ G E G S + E +++E G
Sbjct: 1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYG 60
Query: 224 GYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVM 283
++PRAI VDLEP +D VR+GPY +F P+ + G+ AANN+A+GHYT G E++ V+
Sbjct: 61 KFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVL 120
Query: 284 DLTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVSD 343
D R+ A+ CD +QGF ++ EY + F+V P+P+VS
Sbjct: 121 DRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVST 180
Query: 344 TVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGIT 403
+VVEPYN +L+ +E +D TF +DNEA+YD+C R+L + PS+ +LN+L++ + +T
Sbjct: 181 SVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVT 240
Query: 404 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
LRF G LN DL + N+VP+PR+HF + +P++
Sbjct: 241 ASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVL 277
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYE-GTSDLQ--LERIQVYYNEA-QG 56
MRE++ I VGQ G Q G WE S EHG+ G E G S + E +++E G
Sbjct: 1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYG 60
Query: 57 GYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVM 116
++PRAI VDLEP +D VR+GPY +F P+ + G+ AANN+A+GHYT G E++ V+
Sbjct: 61 KFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVL 120
Query: 117 DLTRREAENCDCMQGFQVTH 136
D R+ A+ CD +QGF TH
Sbjct: 121 DRIRKLADQCDGLQGFLFTH 140
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 223
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQM--PSDKTIGGGDDSFNTFFSETGA 58
Query: 224 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 282
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 283 MDLTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVS 342
+D R+ A+ C +QGF V ++ +Y + FS+ P+P+VS
Sbjct: 119 LDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVS 178
Query: 343 DTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+ + I
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 238
Query: 403 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
T LRF G LN DL + N+VP+PR+HF ++ AP++
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 56
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQM--PSDKTIGGGDDSFNTFFSETGA 58
Query: 57 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 115
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 116 MDLTRREAENCDCMQGFQVTH 136
+D R+ A+ C +QGF V H
Sbjct: 119 LDRIRKLADQCTGLQGFSVFH 139
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 223
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 224 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 282
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 283 MDLTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVS 342
+D R+ A+ C +QGF V ++ +Y + FS+ P+P+VS
Sbjct: 119 LDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVS 178
Query: 343 DTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+ + I
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 238
Query: 403 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
T LRF G LN DL + N+VP+PR+HF ++ AP++
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 56
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 57 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 115
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 116 MDLTRREAENCDCMQGFQVTH 136
+D R+ A+ C +QGF V H
Sbjct: 119 LDRIRKLADQCTGLQGFLVFH 139
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 223
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQM--PSDKTIGGGDDSFNTFFSETGA 58
Query: 224 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 282
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 283 MDLTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVS 342
+D R+ A+ C +QGF V ++ +Y + FS+ P+P+VS
Sbjct: 119 LDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVS 178
Query: 343 DTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+ + I
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 238
Query: 403 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
T LRF G LN DL + N+VP+PR+HF ++ AP++
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 56
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQM--PSDKTIGGGDDSFNTFFSETGA 58
Query: 57 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 115
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 116 MDLTRREAENCDCMQGFQVTH 136
+D R+ A+ C +QGF V H
Sbjct: 119 LDRIRKLADQCTGLQGFLVFH 139
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 223
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQM--PSDKTIGGGDDSFNTFFSETGA 58
Query: 224 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 282
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 283 MDLTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVS 342
+D R+ A+ C +QGF V ++ +Y + FS+ P+P+VS
Sbjct: 119 LDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVS 178
Query: 343 DTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+ + I
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 238
Query: 403 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
T LRF G LN DL + N+VP+PR HF ++ AP++
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVI 276
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 56
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQM--PSDKTIGGGDDSFNTFFSETGA 58
Query: 57 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 115
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 116 MDLTRREAENCDCMQGFQVTH 136
+D R+ A+ C +QGF V H
Sbjct: 119 LDRIRKLADQCTGLQGFSVFH 139
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 218 bits (554), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 223
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 224 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 282
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 283 MDLTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVS 342
+D R+ A+ C +QGF V ++ +Y + FS+ P+P+VS
Sbjct: 119 LDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVS 178
Query: 343 DTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+ + I
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 238
Query: 403 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
T LRF G LN DL + N+VP+PR HF ++ AP++
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVI 276
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 56
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 57 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 115
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 116 MDLTRREAENCDCMQGFQVTH 136
+D R+ A+ C +QGF V H
Sbjct: 119 LDRIRKLADQCTGLQGFSVFH 139
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 217 bits (553), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 223
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 224 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 282
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 283 MDLTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVS 342
+D R+ A+ C +QGF V ++ +Y + FS+ P+P+VS
Sbjct: 119 LDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVS 178
Query: 343 DTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+ + I
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 238
Query: 403 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
T LRF G LN DL + N+VP+PR HF ++ AP++
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVI 276
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 56
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 57 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 115
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 116 MDLTRREAENCDCMQGFQVTH 136
+D R+ A+ C +QGF V H
Sbjct: 119 LDRIRKLADQCTGLQGFSVFH 139
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 217 bits (553), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 223
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 224 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 282
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 283 MDLTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVS 342
+D R+ A+ C +QGF V ++ +Y + FS+ P+P+VS
Sbjct: 119 LDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVS 178
Query: 343 DTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+ + I
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 238
Query: 403 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
T LRF G LN DL + N+VP+PR HF ++ AP++
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVI 276
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL----ERIQVYYNEAQG 56
MRE + I VGQ G Q G WE EHG+ G+ SD + + +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMP--SDKTIGGGDDSFNTFFSETGA 58
Query: 57 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 115
G ++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V
Sbjct: 59 GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLV 118
Query: 116 MDLTRREAENCDCMQGFQVTH 136
+D R+ A+ C +QGF V H
Sbjct: 119 LDRIRKLADQCTGLQGFSVFH 139
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 204 bits (518), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 163/277 (58%), Gaps = 7/277 (2%)
Query: 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQG-GYIP 227
REI+ +Q+GQCGNQ G +FW+++ EHG++ E + +R V++ +A YIP
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 228 RAILVDLEPGTMDAVRSGPYGKMFRPDNFL---HGQSGAANNWAKGHYTEGVELVDAVMD 284
RA+L+DLEP + ++ + PY K++ P+N HG GA NNWA G +++G ++ + + D
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHG-GGAGNNWASG-FSQGEKIHEDIFD 120
Query: 285 LTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPS-PKVSD 343
+ REA+ D ++GF + ++ + YP +++ +SV P+ ++SD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 344 TVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGIT 403
VV+PYN++L+L L + +D +DN AL I L + +PS+ +N LVS M T
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 404 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
T LR+PG +N DL L +++P PRLHF M+G PL
Sbjct: 241 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLT 277
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 95/147 (64%), Gaps = 6/147 (4%)
Query: 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQG-GYIP 60
REI+ +Q+GQCGNQ G +FW+++ EHG++ E + +R V++ +A YIP
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 61 RAILVDLEPGTMDAVRSGPYGKMFRPDNFL---HGQSGAANNWAKGHYTEGVELVDAVMD 117
RA+L+DLEP + ++ + PY K++ P+N HG GA NNWA G +++G ++ + + D
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHG-GGAGNNWASG-FSQGEKIHEDIFD 120
Query: 118 LTRREAENCDCMQGFQVTHSLGGGTGS 144
+ REA+ D ++GF + HS+ GGTGS
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGS 147
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 204 bits (518), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 163/277 (58%), Gaps = 7/277 (2%)
Query: 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQG-GYIP 227
REI+ +Q+GQCGNQ G +FW+++ EHG++ E + +R V++ +A YIP
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 228 RAILVDLEPGTMDAVRSGPYGKMFRPDNFL---HGQSGAANNWAKGHYTEGVELVDAVMD 284
RA+L+DLEP + ++ + PY K++ P+N HG GA NNWA G +++G ++ + + D
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHG-GGAGNNWASG-FSQGEKIHEDIFD 120
Query: 285 LTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPS-PKVSD 343
+ REA+ D ++GF + ++ + YP +++ +SV P+ ++SD
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD 180
Query: 344 TVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGIT 403
VV+PYN++L+L L + +D +DN AL I L + +PS+ +N LVS M T
Sbjct: 181 VVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST 240
Query: 404 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
T LR+PG +N DL L +++P PRLHF M+G PL
Sbjct: 241 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLT 277
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 95/147 (64%), Gaps = 6/147 (4%)
Query: 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQG-GYIP 60
REI+ +Q+GQCGNQ G +FW+++ EHG++ E + +R V++ +A YIP
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 61 RAILVDLEPGTMDAVRSGPYGKMFRPDNFL---HGQSGAANNWAKGHYTEGVELVDAVMD 117
RA+L+DLEP + ++ + PY K++ P+N HG GA NNWA G +++G ++ + + D
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHG-GGAGNNWASG-FSQGEKIHEDIFD 120
Query: 118 LTRREAENCDCMQGFQVTHSLGGGTGS 144
+ REA+ D ++GF + HS+ GGTGS
Sbjct: 121 IIDREADGSDSLEGFVLCHSIAGGTGS 147
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 144/279 (51%), Gaps = 7/279 (2%)
Query: 167 KMREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNE----AQ 222
K+ + + +GQ GNQ FW+ + EHG++ + ++++ +
Sbjct: 2 KVNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSS 61
Query: 223 GGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 282
G Y+PRAI+VDLEP +D V++ G +F P N + GA N+A G+ G E++ V
Sbjct: 62 GSYVPRAIMVDLEPSVIDNVKATS-GSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEV 120
Query: 283 MDLTRREAENCDCMQGFQVXXXXXXXXXXXXXXXXXXKIREEYPDRMINAFSVVPSPKVS 342
M E + CD + G V ++E+Y + + + +V+PSP+VS
Sbjct: 121 MSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVS 180
Query: 343 DTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
V EPYN + +L+ L ++D DNEAL+D+ R + SP+ DLN L++ + GI
Sbjct: 181 SVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGI 240
Query: 403 TTCLRFPGQLNAD--LRKLAVNMVPFPRLHFFMSGNAPL 439
T +RF G L + LR+L N+VP P LHF M APL
Sbjct: 241 TASMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPL 279
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 5 VHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNE----AQGGYIP 60
+ + +GQ GNQ FW+ + EHG++ + ++++ + G Y+P
Sbjct: 7 IVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVP 66
Query: 61 RAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTR 120
RAI+VDLEP +D V++ G +F P N + GA N+A G+ G E++ VM
Sbjct: 67 RAIMVDLEPSVIDNVKATS-GSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLD 125
Query: 121 REAENCDCMQGFQVTHSLG 139
E + CD + G V H++G
Sbjct: 126 YEIDKCDNVGGIIVLHAIG 144
>pdb|2R6R|1 Chain 1, Aquifex Aeolicus Ftsz
pdb|2R75|1 Chain 1, Aquifex Aeolicus Ftsz With 8-Morpholino-Gtp
Length = 338
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 350 NAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFP 409
A+ L L E+SD I N+ + ++ R+L + ++++++ ++S + GIT+ + P
Sbjct: 142 KALKGLEKLKESSDAYIVIHNDKIKELSNRTLTIKD-AFKEVDSVLSKAVRGITSIVVTP 200
Query: 410 GQLNADL 416
+N D
Sbjct: 201 AVINVDF 207
>pdb|1MDA|H Chain H, Crystal Structure Of An Electron-Transfer Complex Between
Methylamine Dehydrogenase And Amicyanin
pdb|1MDA|J Chain J, Crystal Structure Of An Electron-Transfer Complex Between
Methylamine Dehydrogenase And Amicyanin
Length = 368
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 77 SGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAE 124
SGP D + Q GA++N+A TE +++ DA D + E
Sbjct: 307 SGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 244 SGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAE 291
SGP D + Q GA++N+A TE +++ DA D + E
Sbjct: 307 SGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,410,756
Number of Sequences: 62578
Number of extensions: 556559
Number of successful extensions: 1326
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1180
Number of HSP's gapped (non-prelim): 57
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)