Query psy17915
Match_columns 440
No_of_seqs 292 out of 2354
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 17:23:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 5.7E-94 1.2E-98 684.6 21.3 273 168-440 1-274 (443)
2 PLN00221 tubulin alpha chain; 100.0 1.1E-76 2.3E-81 609.1 22.2 273 168-440 1-276 (450)
3 KOG1374|consensus 100.0 2.5E-75 5.5E-80 557.3 20.6 273 167-440 1-277 (448)
4 PTZ00335 tubulin alpha chain; 100.0 3.4E-75 7.3E-80 597.8 22.5 273 168-440 1-276 (448)
5 PLN00222 tubulin gamma chain; 100.0 1.9E-74 4.1E-79 592.5 21.4 273 167-440 1-277 (454)
6 cd02188 gamma_tubulin Gamma-tu 100.0 7E-74 1.5E-78 585.4 20.9 271 169-440 1-275 (431)
7 PTZ00010 tubulin beta chain; P 100.0 1.3E-73 2.8E-78 586.8 21.5 273 168-440 1-274 (445)
8 PLN00220 tubulin beta chain; P 100.0 8.4E-73 1.8E-77 582.1 21.7 273 168-440 1-274 (447)
9 PTZ00387 epsilon tubulin; Prov 100.0 5.1E-72 1.1E-76 574.8 22.7 265 168-440 1-301 (465)
10 cd02187 beta_tubulin The tubul 100.0 5.8E-72 1.3E-76 572.5 22.1 272 169-440 1-273 (425)
11 cd02186 alpha_tubulin The tubu 100.0 5.8E-72 1.3E-76 573.4 21.7 272 169-440 1-275 (434)
12 cd02189 delta_tubulin The tubu 100.0 9.7E-68 2.1E-72 543.9 21.9 265 171-440 2-277 (446)
13 cd02190 epsilon_tubulin The tu 100.0 2.1E-64 4.6E-69 509.1 19.8 230 169-440 1-230 (379)
14 KOG1376|consensus 100.0 4.4E-65 9.5E-70 485.7 11.3 259 168-427 1-262 (407)
15 cd06059 Tubulin The tubulin su 100.0 1.3E-58 2.9E-63 469.7 20.3 233 170-440 1-233 (382)
16 COG5023 Tubulin [Cytoskeleton] 100.0 2.7E-57 5.9E-62 433.0 11.7 163 1-163 1-167 (443)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 7.8E-54 1.7E-58 427.3 19.9 231 170-439 1-231 (328)
18 KOG1374|consensus 100.0 9.7E-50 2.1E-54 381.7 11.3 172 1-173 2-183 (448)
19 PF00091 Tubulin: Tubulin/FtsZ 100.0 2.2E-49 4.8E-54 372.3 9.6 215 170-390 1-216 (216)
20 PLN00221 tubulin alpha chain; 100.0 8E-48 1.7E-52 395.6 11.6 167 1-167 1-173 (450)
21 PTZ00335 tubulin alpha chain; 100.0 3.5E-47 7.5E-52 390.7 11.9 167 1-167 1-173 (448)
22 PLN00220 tubulin beta chain; P 100.0 2.9E-46 6.2E-51 385.2 12.0 166 1-166 1-170 (447)
23 PTZ00387 epsilon tubulin; Prov 100.0 2.5E-45 5.4E-50 377.3 11.8 160 1-167 1-172 (465)
24 PLN00222 tubulin gamma chain; 100.0 3.8E-45 8.2E-50 375.8 11.9 166 1-167 2-173 (454)
25 cd02188 gamma_tubulin Gamma-tu 100.0 5.3E-45 1.1E-49 372.8 10.9 165 2-167 1-171 (431)
26 PTZ00010 tubulin beta chain; P 100.0 1.2E-44 2.7E-49 372.2 12.3 167 1-167 1-171 (445)
27 cd02186 alpha_tubulin The tubu 100.0 2.3E-44 5.1E-49 369.4 10.8 166 2-167 1-172 (434)
28 cd02187 beta_tubulin The tubul 100.0 3.3E-43 7.2E-48 360.3 12.3 166 2-167 1-170 (425)
29 cd02189 delta_tubulin The tubu 100.0 5.1E-43 1.1E-47 360.7 11.1 160 4-167 2-167 (446)
30 cd06060 misato Human Misato sh 100.0 5.1E-40 1.1E-44 338.2 20.3 259 169-436 1-298 (493)
31 cd02190 epsilon_tubulin The tu 100.0 1E-39 2.2E-44 329.7 9.6 136 2-166 1-139 (379)
32 KOG1375|consensus 100.0 7.3E-39 1.6E-43 307.6 8.3 200 208-440 5-205 (369)
33 KOG1376|consensus 100.0 1.2E-37 2.5E-42 297.9 8.1 158 1-159 1-164 (407)
34 smart00864 Tubulin Tubulin/Fts 100.0 4.2E-36 9.1E-41 277.1 10.7 185 216-410 3-192 (192)
35 PF00091 Tubulin: Tubulin/FtsZ 100.0 1E-36 2.2E-41 286.4 5.0 161 3-167 1-165 (216)
36 KOG2530|consensus 100.0 6.1E-33 1.3E-37 271.9 13.4 239 168-421 1-324 (483)
37 cd06059 Tubulin The tubulin su 100.0 7.8E-33 1.7E-37 281.1 9.0 127 3-167 1-130 (382)
38 cd02202 FtsZ_type2 FtsZ is a G 100.0 1.1E-31 2.4E-36 268.2 16.1 226 168-436 1-233 (349)
39 cd00286 Tubulin_FtsZ Tubulin/F 100.0 1.1E-29 2.4E-34 253.4 8.0 127 3-167 1-130 (328)
40 cd02191 FtsZ FtsZ is a GTPase 99.9 5.2E-27 1.1E-31 230.3 15.0 200 171-424 3-207 (303)
41 cd06060 misato Human Misato sh 99.9 5.9E-26 1.3E-30 234.2 11.6 158 2-166 1-190 (493)
42 TIGR00065 ftsZ cell division p 99.9 3.3E-25 7.2E-30 220.9 14.4 200 171-424 20-224 (349)
43 cd02201 FtsZ_type1 FtsZ is a G 99.9 2E-24 4.3E-29 212.9 14.1 207 171-425 3-209 (304)
44 PRK13018 cell division protein 99.9 3.6E-23 7.8E-28 207.0 15.1 200 171-424 31-235 (378)
45 PF14881 Tubulin_3: Tubulin do 99.9 1.1E-22 2.3E-27 184.7 13.6 149 248-408 17-180 (180)
46 PRK09330 cell division protein 99.9 1.2E-21 2.7E-26 196.1 12.7 202 170-424 15-221 (384)
47 KOG2530|consensus 99.9 4.3E-22 9.4E-27 195.8 8.4 159 1-163 1-240 (483)
48 smart00864 Tubulin Tubulin/Fts 99.7 4E-19 8.7E-24 164.0 3.5 105 49-159 3-115 (192)
49 KOG1375|consensus 99.6 2.9E-16 6.3E-21 152.0 4.1 103 40-161 4-110 (369)
50 cd02202 FtsZ_type2 FtsZ is a G 99.4 3.2E-13 7E-18 135.4 8.8 120 4-161 3-132 (349)
51 PF10644 Misat_Tub_SegII: Misa 99.4 1E-13 2.2E-18 117.0 4.2 64 169-238 1-69 (115)
52 COG0206 FtsZ Cell division GTP 99.4 1.7E-12 3.7E-17 127.9 12.6 148 269-425 72-219 (338)
53 PF10644 Misat_Tub_SegII: Misa 99.2 4.6E-11 1E-15 100.8 6.2 65 2-72 1-70 (115)
54 PF14881 Tubulin_3: Tubulin do 99.2 3.5E-11 7.5E-16 109.4 5.2 63 97-160 40-107 (180)
55 cd02191 FtsZ FtsZ is a GTPase 98.8 9.5E-09 2.1E-13 101.3 6.9 110 4-156 3-115 (303)
56 cd02201 FtsZ_type1 FtsZ is a G 98.6 6.8E-08 1.5E-12 95.5 7.0 110 4-156 3-114 (304)
57 TIGR00065 ftsZ cell division p 98.6 7.3E-08 1.6E-12 96.7 7.1 110 4-156 20-131 (349)
58 PRK13018 cell division protein 98.4 7.7E-07 1.7E-11 89.8 7.7 110 4-156 31-142 (378)
59 PRK09330 cell division protein 98.0 1.1E-05 2.5E-10 81.6 7.1 110 4-156 16-127 (384)
60 PF13809 Tubulin_2: Tubulin li 96.7 0.041 8.9E-07 55.5 14.5 101 257-358 99-217 (345)
61 PF13809 Tubulin_2: Tubulin li 94.7 0.17 3.7E-06 51.0 9.3 58 90-147 99-165 (345)
62 PRK14484 phosphotransferase ma 61.2 8.1 0.00018 33.0 2.9 43 279-324 41-83 (124)
63 PF02456 Adeno_IVa2: Adenoviru 54.8 1.3E+02 0.0028 30.1 10.1 60 134-197 88-147 (369)
64 PLN02847 triacylglycerol lipas 53.7 44 0.00095 36.1 7.4 62 269-334 224-287 (633)
65 PF03610 EIIA-man: PTS system 47.7 25 0.00053 29.2 3.7 32 279-310 40-71 (116)
66 PF06908 DUF1273: Protein of u 46.0 53 0.0012 29.8 5.8 83 279-370 28-110 (177)
67 cd00741 Lipase Lipase. Lipase 42.8 40 0.00087 29.1 4.5 64 270-337 2-65 (153)
68 PRK09461 ansA cytoplasmic aspa 41.7 1E+02 0.0022 31.0 7.6 93 274-374 63-156 (335)
69 PLN02408 phospholipase A1 41.5 66 0.0014 32.7 6.2 64 277-344 179-244 (365)
70 PF08259 Periviscerokin: Periv 41.1 12 0.00027 17.8 0.5 8 422-429 4-11 (11)
71 PF12953 DUF3842: Domain of un 40.8 61 0.0013 27.8 4.9 28 308-335 7-35 (131)
72 COG0206 FtsZ Cell division GTP 40.4 32 0.0007 34.5 3.8 40 105-147 75-114 (338)
73 cd00006 PTS_IIA_man PTS_IIA, P 38.1 47 0.001 27.8 4.0 32 279-310 40-71 (122)
74 TIGR00824 EIIA-man PTS system, 38.0 49 0.0011 27.6 4.1 32 279-310 41-72 (116)
75 PRK14484 phosphotransferase ma 35.6 32 0.0007 29.3 2.5 49 112-164 41-92 (124)
76 PF03610 EIIA-man: PTS system 34.4 42 0.00092 27.7 3.1 45 112-157 40-84 (116)
77 cd00411 Asparaginase Asparagin 33.0 1.6E+02 0.0034 29.4 7.4 90 274-371 60-152 (323)
78 TIGR02153 gatD_arch glutamyl-t 31.0 2.2E+02 0.0048 29.4 8.2 91 274-371 120-211 (404)
79 PF00710 Asparaginase: Asparag 30.3 1.5E+02 0.0032 29.4 6.7 93 274-374 54-147 (313)
80 cd00519 Lipase_3 Lipase (class 29.9 52 0.0011 30.6 3.2 58 267-328 99-156 (229)
81 KOG3178|consensus 29.5 51 0.0011 33.1 3.1 42 288-334 167-208 (342)
82 TIGR00824 EIIA-man PTS system, 28.6 78 0.0017 26.4 3.8 48 112-160 41-88 (116)
83 PRK13660 hypothetical protein; 28.0 4.7E+02 0.01 23.8 9.1 56 280-342 29-84 (182)
84 PF01713 Smr: Smr domain; Int 27.9 1.7E+02 0.0037 22.4 5.4 52 280-334 9-66 (83)
85 cd00006 PTS_IIA_man PTS_IIA, P 27.9 77 0.0017 26.5 3.7 32 112-143 40-71 (122)
86 TIGR02364 dha_pts dihydroxyace 27.0 65 0.0014 27.4 3.0 30 279-309 41-71 (125)
87 smart00870 Asparaginase Aspara 26.0 2.6E+02 0.0056 27.8 7.6 96 274-375 57-155 (323)
88 cd01833 XynB_like SGNH_hydrola 25.9 2.7E+02 0.0059 23.6 7.0 39 316-354 68-107 (157)
89 PLN02371 phosphoglucosamine mu 25.8 3.2E+02 0.0069 29.7 8.7 74 295-372 260-337 (583)
90 PRK04183 glutamyl-tRNA(Gln) am 23.7 3.2E+02 0.0069 28.4 7.9 90 274-371 133-223 (419)
91 cd00741 Lipase Lipase. Lipase 23.6 42 0.00091 29.0 1.3 51 102-153 1-51 (153)
92 PRK15414 phosphomannomutase Cp 23.6 4.7E+02 0.01 27.3 9.3 94 278-372 151-248 (456)
93 PF03283 PAE: Pectinacetyleste 23.2 3.7E+02 0.008 27.3 8.2 51 271-327 132-183 (361)
94 PTZ00489 glutamate 5-kinase; P 22.6 5.8E+02 0.013 24.6 9.1 46 321-368 87-132 (264)
95 PF02353 CMAS: Mycolic acid cy 21.9 1.3E+02 0.0028 29.2 4.4 64 265-335 29-93 (273)
96 TIGR00519 asnASE_I L-asparagin 21.6 2.7E+02 0.0058 27.9 6.8 74 274-354 59-133 (336)
97 COG0031 CysK Cysteine synthase 21.3 53 0.0011 32.4 1.5 100 263-379 147-253 (300)
98 COG4474 Uncharacterized protei 20.7 4.1E+02 0.0088 24.0 6.7 67 269-340 14-82 (180)
99 PF02879 PGM_PMM_II: Phosphogl 20.7 1.9E+02 0.0041 23.1 4.5 26 297-322 20-45 (104)
100 PF01764 Lipase_3: Lipase (cla 20.6 1E+02 0.0022 25.7 3.1 54 269-327 36-91 (140)
101 COG0572 Udk Uridine kinase [Nu 20.4 1.2E+02 0.0025 28.6 3.5 27 301-328 9-35 (218)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=5.7e-94 Score=684.60 Aligned_cols=273 Identities=58% Similarity=1.070 Sum_probs=269.5
Q ss_pred eeeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCC-CCcceeEecCCCCcccccccCC
Q psy17915 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRSGP 246 (440)
Q Consensus 168 mrEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~~~ 246 (440)
||||||||+||||||||++||+++|.||+|.++|.+....+.+.++.++||+|+..+ |+||||+|||||+||+.|++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 899999999999999999999999999999999998887788889999999999998 9999999999999999999999
Q ss_pred CCcccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCC
Q psy17915 247 YGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYP 326 (440)
Q Consensus 247 ~~~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~ 326 (440)
|+++|||+|++++++|||||||+|+|++|+++.|.++|.|||++|.||.||||+++||++||||||+||.|+|+|++|||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcccc
Q psy17915 327 DRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406 (440)
Q Consensus 327 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~ 406 (440)
||.+.+|+|+|+++.++++|||||++|++++|.|+||+++++||++|+++|.+++++++|+|.++|+|||++++++|+++
T Consensus 161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl 240 (443)
T COG5023 161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL 240 (443)
T ss_pred hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 407 r~~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
||||++|.||.+|++|||||||+||+.++|+|++
T Consensus 241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~ 274 (443)
T COG5023 241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFT 274 (443)
T ss_pred ecCccccchHHHHHhcCCCCCcccccccccCccc
Confidence 9999999999999999999999999999999985
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.1e-76 Score=609.14 Aligned_cols=273 Identities=44% Similarity=0.841 Sum_probs=261.5
Q ss_pred eeeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCch--hhhcccccccccccCC-CCcceeEecCCCCccccccc
Q psy17915 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSD--LQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRS 244 (440)
Q Consensus 168 mrEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~--~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~ 244 (440)
|||||+||+||||||||.+||+++|+||+++++|.+..+.. ...+..++||+|+.++ |+||||+||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 89999999999999999999999999999999997644332 2345778999999888 99999999999999999999
Q ss_pred CCCCcccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHh
Q psy17915 245 GPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREE 324 (440)
Q Consensus 245 ~~~~~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~de 324 (440)
++++++|+|++++.+++|+|||||+|||+.|+++.|+++|+|||++|+||++|||+++||++||||||+|++++|+|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 99989999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcc
Q psy17915 325 YPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 404 (440)
Q Consensus 325 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 404 (440)
|||+++.+++|+|++..++++++|||++|++++|.+++|+++++||++|+++|.+.++++.|+|.++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999877889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 405 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 405 ~~r~~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
++||||.+|.|+.++.+||||||++||++++|+|++
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~ 276 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVI 276 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccc
Confidence 999999999999999999999999999999999974
No 3
>KOG1374|consensus
Probab=100.00 E-value=2.5e-75 Score=557.34 Aligned_cols=273 Identities=42% Similarity=0.823 Sum_probs=262.5
Q ss_pred ceeeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCC-CCcceeEecCCCCcccccccC
Q psy17915 167 KMREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRSG 245 (440)
Q Consensus 167 ~mrEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~~ 245 (440)
++|||||+|+||||||||.+||..+|.||+|.++|......+.+.++.++||+|..++ |+|||||||+||+||+.+.++
T Consensus 1 m~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~ 80 (448)
T KOG1374|consen 1 MPREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSS 80 (448)
T ss_pred CCceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccc
Confidence 4789999999999999999999999999999999998777677778889999999998 999999999999999999999
Q ss_pred CCCcccCCCCcccc--ccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHH
Q psy17915 246 PYGKMFRPDNFLHG--QSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIRE 323 (440)
Q Consensus 246 ~~~~~~~p~~~~~~--~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~d 323 (440)
+|+++|+|+|+... +.|||||||.||. +|+++.|+|+|.|+|++|.||+|+||+++||++||||||+||.++|+|+|
T Consensus 81 ~~s~l~n~eni~~s~~ggGAGNNWA~GY~-~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~d 159 (448)
T KOG1374|consen 81 PYSGLYNPENIFLSDHGGGAGNNWASGYS-QGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLND 159 (448)
T ss_pred hhhcccCccceEEecCCCCcccccccccc-cchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHH
Confidence 99999999998876 4779999999986 59999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceeeeeecCCC-CCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcC
Q psy17915 324 EYPDRMINAFSVVPSP-KVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402 (440)
Q Consensus 324 ey~~~~i~~~~v~P~~-~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~ 402 (440)
+||||.+.+++|+|.. ..++++|||||++|+|++|.+.+|+++++||.||.++|.+.+++.+|+|.++|++||..|++.
T Consensus 160 rypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~s 239 (448)
T KOG1374|consen 160 RYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAS 239 (448)
T ss_pred hchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999985 478999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 403 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 403 t~~~r~~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
|.++||||+++.++..|...|||+|++||++++|.|++
T Consensus 240 t~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~ 277 (448)
T KOG1374|consen 240 TTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLT 277 (448)
T ss_pred cccccchhhccCcHHHHHhhcCCCCCeeeeeccCCccc
Confidence 99999999999999999999999999999999999985
No 4
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=3.4e-75 Score=597.77 Aligned_cols=273 Identities=43% Similarity=0.863 Sum_probs=261.3
Q ss_pred eeeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCch--hhhcccccccccccCC-CCcceeEecCCCCccccccc
Q psy17915 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSD--LQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRS 244 (440)
Q Consensus 168 mrEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~--~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~ 244 (440)
|||||+||+||||||||.+||+++|+||+++++|.+..+.. ...+..++||+|+..+ |+||||+||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 89999999999999999999999999999999997654332 2245778999999888 99999999999999999999
Q ss_pred CCCCcccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHh
Q psy17915 245 GPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREE 324 (440)
Q Consensus 245 ~~~~~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~de 324 (440)
++++++|+|++++++++|+|||||+|||+.|+++.|+++|+|||++|+||++|||+++||++||||||+|++|+|+|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcc
Q psy17915 325 YPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 404 (440)
Q Consensus 325 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 404 (440)
||++++++++|+|++..++.+++|||++|++++|.+++|+++++||++|+++|.+.+++..++|.++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999877899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 405 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 405 ~~r~~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
++||||.++.|+.++.+||||||++||++++|+|++
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~ 276 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPII 276 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCccc
Confidence 999999999999999999999999999999999984
No 5
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=1.9e-74 Score=592.54 Aligned_cols=273 Identities=40% Similarity=0.785 Sum_probs=258.9
Q ss_pred ceeeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCC-CCcceeEecCCCCcccccccC
Q psy17915 167 KMREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRSG 245 (440)
Q Consensus 167 ~mrEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~~ 245 (440)
||||||+||+||||||||.+||+++|+||+++++|.+..+.+...+..++||+|+..+ |+||||+||+||++|++++.+
T Consensus 1 Mm~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~ 80 (454)
T PLN00222 1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNS 80 (454)
T ss_pred CCccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccC
Confidence 3799999999999999999999999999999999987554444456788999999888 999999999999999999998
Q ss_pred CCCcccCCCCcccccc--CcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHH
Q psy17915 246 PYGKMFRPDNFLHGQS--GAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIRE 323 (440)
Q Consensus 246 ~~~~~~~p~~~~~~~~--~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~d 323 (440)
+++++|+|++++.+++ |+||||++||+ .|+++.|+++|+||+++|.||++|||+++||++||||||+|++++|+|+|
T Consensus 81 ~~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d 159 (454)
T PLN00222 81 EYRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALND 159 (454)
T ss_pred ccccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHh
Confidence 9999999999999986 69999999955 79999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceeeeeecCCCC-CCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcC
Q psy17915 324 EYPDRMINAFSVVPSPK-VSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402 (440)
Q Consensus 324 ey~~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~ 402 (440)
+||++.+++++|+|++. .++++++|||++|++++|.+++|+++++||++|+++|.+.++++.|+|.++|++||++|+++
T Consensus 160 ~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~ 239 (454)
T PLN00222 160 RYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAS 239 (454)
T ss_pred hcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCc
Confidence 99999999999999863 57889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 403 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 403 t~~~r~~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
|+++||||.+|.|+.++.+||||||++||++++|+|++
T Consensus 240 T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~ 277 (454)
T PLN00222 240 TTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLT 277 (454)
T ss_pred ccccCCCCccCCCHHHHhhhcCCCCCceeecccccccc
Confidence 99999999999999999999999999999999999973
No 6
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=7e-74 Score=585.42 Aligned_cols=271 Identities=42% Similarity=0.825 Sum_probs=257.8
Q ss_pred eeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCC-CCcceeEecCCCCcccccccCCC
Q psy17915 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRSGPY 247 (440)
Q Consensus 169 rEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~~~~ 247 (440)
||||+||+||||||||.+||+++|+||+++++|.+..+++...+..++||+|+.++ |+||||+||+||++|++++.+++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 79999999999999999999999999999999887654333456789999999888 99999999999999999999999
Q ss_pred CcccCCCCcccccc--CcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhC
Q psy17915 248 GKMFRPDNFLHGQS--GAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEY 325 (440)
Q Consensus 248 ~~~~~p~~~~~~~~--~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey 325 (440)
+++|+|++++.+++ |+||||++||+ .|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|+|+|+|
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 99999999999997 99999999965 7999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeecCCCCC-CcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcc
Q psy17915 326 PDRMINAFSVVPSPKV-SDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 404 (440)
Q Consensus 326 ~~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 404 (440)
||+.+++++|+|++.. ++++++|||++|++++|.+++|+++++||++|+++|.+.++++.++|.++|++||++|+++|+
T Consensus 160 ~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~ 239 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred CcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCccc
Confidence 9999999999998654 588999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 405 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 405 ~~r~~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
++||||.+|.|+.++++||||||++||++++|+|++
T Consensus 240 ~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~ 275 (431)
T cd02188 240 TLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLT 275 (431)
T ss_pred ceecCCccCCCHHHHHHhcCCCCCceeeccccCccc
Confidence 999999999999999999999999999999999984
No 7
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1.3e-73 Score=586.82 Aligned_cols=273 Identities=76% Similarity=1.333 Sum_probs=262.2
Q ss_pred eeeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCC-CCcceeEecCCCCcccccccCC
Q psy17915 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRSGP 246 (440)
Q Consensus 168 mrEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~~~ 246 (440)
|||||+||+||||||||.+||+++++||+++++|.+....+...+..++||+|+..+ |+||||+||+||++|++++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 899999999999999999999999999999999887554433345778999999888 9999999999999999999988
Q ss_pred CCcccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCC
Q psy17915 247 YGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYP 326 (440)
Q Consensus 247 ~~~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~ 326 (440)
++.+|+|++++++++|+|||||+|||+.|+++.++++|+||+++|+||++|||+++||++||||||+|++++|+|+|+||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcccc
Q psy17915 327 DRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406 (440)
Q Consensus 327 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~ 406 (440)
|+.+++++|+|++..++.++++||++|++++|.+++|++++|||++|+++|.+.++++.|+|.++|++||++|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~ 240 (445)
T PTZ00010 161 DRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCL 240 (445)
T ss_pred ccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccce
Confidence 99999999999987789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 407 r~~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
||||.+|.|+.+|++||||||++||++++|+|++
T Consensus 241 Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~ 274 (445)
T PTZ00010 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLT 274 (445)
T ss_pred ecCCcccccHHHHHHHHhcCCCceeeecccCccc
Confidence 9999999999999999999999999999999984
No 8
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=8.4e-73 Score=582.09 Aligned_cols=273 Identities=75% Similarity=1.309 Sum_probs=262.6
Q ss_pred eeeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCC-CCcceeEecCCCCcccccccCC
Q psy17915 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRSGP 246 (440)
Q Consensus 168 mrEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~~~ 246 (440)
|||||+||+||||||||.+||+++++||+++++|.+..+.+...+..++||+|+.++ |+||||+||+||++|++++.++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 899999999999999999999999999999999887655444346778999999887 9999999999999999999999
Q ss_pred CCcccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCC
Q psy17915 247 YGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYP 326 (440)
Q Consensus 247 ~~~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~ 326 (440)
++++|+|++++++++|+|||||+|||+.|+++.|+++|+|||++|+||++|||+++||++||||||+|++++++|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcccc
Q psy17915 327 DRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406 (440)
Q Consensus 327 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~ 406 (440)
++.+++++|+|++..+++++++||++|++++|.+++|+++++||++|+++|.+.+++..++|.++|++||+.|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~sl 240 (447)
T PLN00220 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (447)
T ss_pred ccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhh
Confidence 99999999999987899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 407 r~~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
||||.+|.|+.++.+||||||++||++++++|++
T Consensus 241 RFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~ 274 (447)
T PLN00220 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT 274 (447)
T ss_pred ccCCcCCccHHHHHHHhCCccceeEeecccCccc
Confidence 9999999999999999999999999999999974
No 9
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=5.1e-72 Score=574.82 Aligned_cols=265 Identities=40% Similarity=0.745 Sum_probs=250.4
Q ss_pred eeeeEEeecCCchhHHHHHHHHHHHHhcC-CCCCCCccCCchhhhcccccccccccC-------C-CCcceeEecCCCCc
Q psy17915 168 MREIVHIQVGQCGNQTGVKFWEEISQEHG-LNEMGRYEGTSDLQLERIQVYYNEAQG-------G-YIPRAILVDLEPGT 238 (440)
Q Consensus 168 mrEiItiq~Gq~gnqiG~~~W~~~~~e~~-~~~~g~~~~~~~~~~~~~~~~F~e~~~-------~-~~pRallvDle~~~ 238 (440)
|||||+||+||||||||.+||+++|+||+ ++++|.+ +++.++||++... + |+||||+||+||++
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 89999999999999999999999999999 7777764 3467899985321 2 99999999999999
Q ss_pred ccccccCCCCcccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHH
Q psy17915 239 MDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLL 318 (440)
Q Consensus 239 i~~v~~~~~~~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~ll 318 (440)
|++++.++++++|+|++++++++|+||||++|||..|+++.|+++|+||+++|+||.+|||+++||++||||||+|+.++
T Consensus 74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ll 153 (465)
T PTZ00387 74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRIL 153 (465)
T ss_pred HHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCC-------------
Q psy17915 319 TKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNS------------- 385 (440)
Q Consensus 319 e~l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~------------- 385 (440)
|+|+|+||++.+++++|+|+ ..++++++|||++|++++|.+++|+++++||++|+++|.+.++++.
T Consensus 154 e~l~d~y~~~~~~~~~V~P~-~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
T PTZ00387 154 GMLEDEFPHVFRFCPVVFPS-AVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQ 232 (465)
T ss_pred HHHHHhcccCceeeeEecCC-CCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccccc
Confidence 99999999999999999998 4688899999999999999999999999999999999988777763
Q ss_pred --------------CchHHHHHHHHHHhhcCcccccCCCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 386 --------------PSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 386 --------------~~~~~~N~~ia~~i~~~t~~~r~~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
+.|.++|++||++|+++|+++||||.+|+|+.++.+||||||++||++++|+|++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~ 301 (465)
T PTZ00387 233 PHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLV 301 (465)
T ss_pred ccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCccc
Confidence 8899999999999999999999999999999999999999999999999999983
No 10
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=5.8e-72 Score=572.47 Aligned_cols=272 Identities=79% Similarity=1.351 Sum_probs=259.8
Q ss_pred eeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCC-CCcceeEecCCCCcccccccCCC
Q psy17915 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRSGPY 247 (440)
Q Consensus 169 rEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~~~~ 247 (440)
||||+||+||||||||.+||+++|+||+++++|.+....+...+..++||+|+..+ |+||||+||+||++|++++.+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 79999999999999999999999999999999876544433345678999998887 99999999999999999998888
Q ss_pred CcccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCC
Q psy17915 248 GKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPD 327 (440)
Q Consensus 248 ~~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~ 327 (440)
+.+|+|++++.+++++||||++|||+.|++++|+++|+||+++|+||++|||+++||++||||||+|++++|+|+|+|||
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCccccc
Q psy17915 328 RMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLR 407 (440)
Q Consensus 328 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r 407 (440)
+.+++++|+|++..++.+++|||++|+|++|.+++|+++++||++|+++|.+.+++..++|.++|++||++|+++|+++|
T Consensus 161 ~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~R 240 (425)
T cd02187 161 RIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240 (425)
T ss_pred cceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeee
Confidence 99999999999777799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 408 FPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 408 ~~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
|||.+|.|+.++++||||||++||++++|+|++
T Consensus 241 fpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~ 273 (425)
T cd02187 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLT 273 (425)
T ss_pred cCCccccCHHHHHHhcCCCCCceecccccCccc
Confidence 999999999999999999999999999999984
No 11
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=5.8e-72 Score=573.37 Aligned_cols=272 Identities=44% Similarity=0.851 Sum_probs=260.2
Q ss_pred eeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCch--hhhcccccccccccCC-CCcceeEecCCCCcccccccC
Q psy17915 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSD--LQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRSG 245 (440)
Q Consensus 169 rEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~--~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~~ 245 (440)
||||+||+||||||||.+||+++++||+++++|.+..+.. ...+..++||+|+..+ |+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 7999999999999999999999999999999987654433 2346789999999888 999999999999999999988
Q ss_pred CCCcccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhC
Q psy17915 246 PYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEY 325 (440)
Q Consensus 246 ~~~~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey 325 (440)
+++.+|+|++++.+++++|||||+|||+.|+++.|+++|+||+++|+||++|||+++||++||||||+|++++|+|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCccc
Q psy17915 326 PDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTC 405 (440)
Q Consensus 326 ~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 405 (440)
||+++++++|+|++..++.++++||++|++++|.+++|+++++||++|+++|.+.++++.++|.++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999997778899999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 406 LRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 406 ~r~~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
+||||.++.|+.++.+||||||++||++++|+|++
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~ 275 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPII 275 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCccc
Confidence 99999999999999999999999999999999974
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=9.7e-68 Score=543.90 Aligned_cols=265 Identities=31% Similarity=0.625 Sum_probs=249.8
Q ss_pred eEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCC-CCcceeEecCCCCcccccccCCCC-
Q psy17915 171 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRSGPYG- 248 (440)
Q Consensus 171 iItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~~~~~- 248 (440)
||+||+||||||||.+||+++++||+++++|.+. ...+..++||.|+..+ |+||||+||+||++|++++.++.+
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~ 77 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGG 77 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCc
Confidence 8999999999999999999999999998887653 2245678999998877 999999999999999999886643
Q ss_pred -cccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCC
Q psy17915 249 -KMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPD 327 (440)
Q Consensus 249 -~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~ 327 (440)
++|+|++++.+++|+|||||+|||+.|+++.|+++|+|||++|+||++|||+++||++||||||+|++++|+|+|+||+
T Consensus 78 ~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~ 157 (446)
T cd02189 78 TWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPE 157 (446)
T ss_pred ccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCccccc
Q psy17915 328 RMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLR 407 (440)
Q Consensus 328 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r 407 (440)
+++++++|+|+. .+++++++||++|++++|.+++|+++++||++|+++|.+.++++.++|.++|++||++|+++|++.|
T Consensus 158 ~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r 236 (446)
T cd02189 158 SLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSL 236 (446)
T ss_pred cceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence 999999999985 6899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CC-------CCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 408 F-PG-------QLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 408 ~-~g-------~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
+ |+ .++.|+.++.+||||||++||++++|+|++
T Consensus 237 ~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~ 277 (446)
T cd02189 237 DSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQM 277 (446)
T ss_pred ccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcc
Confidence 7 63 369999999999999999999999999974
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=2.1e-64 Score=509.13 Aligned_cols=230 Identities=42% Similarity=0.810 Sum_probs=224.3
Q ss_pred eeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCCCCcceeEecCCCCcccccccCCCC
Q psy17915 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYG 248 (440)
Q Consensus 169 rEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~pRallvDle~~~i~~v~~~~~~ 248 (440)
||||+||+||||||||.+||+++++|| |+||||+||+||++|++++.++++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh-----------------------------~~pR~v~iD~e~~~i~~i~~~~~~ 51 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH-----------------------------LKARAVLIDMEEGVVNEILKGPLR 51 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh-----------------------------cCCcceeccCChhHHHHHhcCccc
Confidence 699999999999999999999999998 489999999999999999998889
Q ss_pred cccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCC
Q psy17915 249 KMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDR 328 (440)
Q Consensus 249 ~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~ 328 (440)
++|+|++++.+++|+||||++||+..|+++.|+++|+||+++|+||.+|||+++||++||||||+|+.++|+|+|+|||+
T Consensus 52 ~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~ 131 (379)
T cd02190 52 DLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEV 131 (379)
T ss_pred cccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcccccC
Q psy17915 329 MINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRF 408 (440)
Q Consensus 329 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~ 408 (440)
.+++++|+|++. ++.+++|||++|++++|.+++|+++++||++|+ +|.++|++||++|+++|+++||
T Consensus 132 ~~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~rf 198 (379)
T cd02190 132 YRFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMRF 198 (379)
T ss_pred ceEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceeec
Confidence 999999999974 888999999999999999999999999999997 7999999999999999999999
Q ss_pred CCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 409 PGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 409 ~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
||.+|.|+.++.+||||||++||++++|+|++
T Consensus 199 ~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~ 230 (379)
T cd02190 199 EGSLNVDLNEITMNLVPFPRLHFLVSSLSPLY 230 (379)
T ss_pred ccccccchhhhccccccCCCceeccccccccc
Confidence 99999999999999999999999999999984
No 14
>KOG1376|consensus
Probab=100.00 E-value=4.4e-65 Score=485.75 Aligned_cols=259 Identities=45% Similarity=0.853 Sum_probs=252.4
Q ss_pred eeeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhh--hcccccccccccCC-CCcceeEecCCCCccccccc
Q psy17915 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQ--LERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRS 244 (440)
Q Consensus 168 mrEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~--~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~ 244 (440)
|||||+||+||+|.|||+++|+++|.||+++++|.++.+.+.. ++++++||.++..+ ++||+++||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 8999999999999999999999999999999999988755433 44788999999888 9999999999999 999999
Q ss_pred CCCCcccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHh
Q psy17915 245 GPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREE 324 (440)
Q Consensus 245 ~~~~~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~de 324 (440)
|+|+.+|||+++++|+++++||+|+|+|++|+|+++..+++||+.++.|..||||.+||+++||||||++|.++|.|..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcc
Q psy17915 325 YPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 404 (440)
Q Consensus 325 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 404 (440)
|+||..+.++++|++..++.+++|||++|+.+...+++|+.+++||+++|++|++++.++.|+|.++|++|+|+++++|.
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCChhhhhcCCccCC
Q psy17915 405 CLRFPGQLNADLRKLAVNMVPFP 427 (440)
Q Consensus 405 ~~r~~g~~n~dl~~l~~nLvP~p 427 (440)
++||+|.+|+||.+|++||||||
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp 262 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP 262 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc
Confidence 99999999999999999999999
No 15
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=1.3e-58 Score=469.67 Aligned_cols=233 Identities=55% Similarity=1.029 Sum_probs=226.5
Q ss_pred eeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCCCCcceeEecCCCCcccccccCCCCc
Q psy17915 170 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGK 249 (440)
Q Consensus 170 EiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~pRallvDle~~~i~~v~~~~~~~ 249 (440)
|||+||+||||||||.+||+++ |+||+||++++.++.++..+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~--------------------------------------i~iD~e~~~i~~i~~~~~~~ 42 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL--------------------------------------ILVDLDPRVINEILQGQLSK 42 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH--------------------------------------HcccCCcchhhhhhcccccc
Confidence 8999999999999999999983 89999999999999988888
Q ss_pred ccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCc
Q psy17915 250 MFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRM 329 (440)
Q Consensus 250 ~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~ 329 (440)
+|+|++++++++++||||++||+..|+++.|+++|+||+++|+||.+|||+++||++||||||+|+.++|.|+|+|||+.
T Consensus 43 ~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~ 122 (382)
T cd06059 43 LFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKIL 122 (382)
T ss_pred cCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcccccCC
Q psy17915 330 INAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFP 409 (440)
Q Consensus 330 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 409 (440)
+++++|+|++..+++++++||++|++++|.+++|++++++|++|.++|.+.+.+..++|+++|++||++|+++|+++|+|
T Consensus 123 i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~~ 202 (382)
T cd06059 123 INTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRFP 202 (382)
T ss_pred eEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhcccccccccC
Confidence 99999999976666899999999999999999999999999999999998888889999999999999999999999999
Q ss_pred CCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 410 GQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 410 g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
|.+|.|+.++.++|||||++||++++|+|++
T Consensus 203 g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~ 233 (382)
T cd06059 203 GYLNFDLRKLATNLVPFPRLHFLTPSFAPLI 233 (382)
T ss_pred CCcCCCHHHHhhhcCCCCCceeccccccccc
Confidence 9999999999999999999999999999984
No 16
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=2.7e-57 Score=433.04 Aligned_cols=163 Identities=53% Similarity=0.961 Sum_probs=156.4
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccC-CCcccceEEEecCCCCCccccccCC
Q psy17915 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGP 79 (440)
Q Consensus 1 M~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~-~~~~~pRailvDlep~~i~~i~~~~ 79 (440)
||||||||+||||||||++||+++|+||||+++|.++..++.+.++.++||+|+ +++|+||||+|||||+||+.+++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 999999999999999999999999999999999999988888889999999997 5679999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhcccc
Q psy17915 80 YGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANF 156 (440)
Q Consensus 80 ~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~ 156 (440)
|+.+|+|+|++.+|+|||||||+|+|++|+++.|.++|+|||+||.||+||||+++||++||||||||+- +|++|||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 5789999
Q ss_pred ccccccc
Q psy17915 157 KSKIFGK 163 (440)
Q Consensus 157 ~~~i~~~ 163 (440)
||.+.+.
T Consensus 161 kK~~~tf 167 (443)
T COG5023 161 KKIKLTF 167 (443)
T ss_pred hhheeEE
Confidence 9887544
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=7.8e-54 Score=427.26 Aligned_cols=231 Identities=52% Similarity=0.963 Sum_probs=222.7
Q ss_pred eeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCCCCcceeEecCCCCcccccccCCCCc
Q psy17915 170 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGK 249 (440)
Q Consensus 170 EiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~pRallvDle~~~i~~v~~~~~~~ 249 (440)
|||+||+||||||||++||+++ |+||+|+++++.++..+...
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~--------------------------------------v~idtd~~~l~~~~~~~~~~ 42 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL--------------------------------------VLVDTEPGVIDETLSGPYRL 42 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh--------------------------------------heecCCHHHHHHHhCccccc
Confidence 8999999999999999999862 89999999999998888888
Q ss_pred ccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCc
Q psy17915 250 MFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRM 329 (440)
Q Consensus 250 ~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~ 329 (440)
+|++.+.+++++|+||||+.||+..+++..|+++|+||+++|+||++|||+++||++||||||+++.++|+|+|+|||++
T Consensus 43 ~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~ 122 (328)
T cd00286 43 LFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRL 122 (328)
T ss_pred ccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcccccCC
Q psy17915 330 INAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFP 409 (440)
Q Consensus 330 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 409 (440)
+++++++|+...+ .++++||+++++++|.+++|+++++||++|+++|++.+.+..+.|+++|++||++|+++|.++|||
T Consensus 123 ~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 201 (328)
T cd00286 123 KITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFD 201 (328)
T ss_pred eeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhccccccccccC
Confidence 9999999996544 799999999999999999999999999999999998888889999999999999999999999999
Q ss_pred CCCCCChhhhhcCCccCCCcceeccccccC
Q psy17915 410 GQLNADLRKLAVNMVPFPRLHFFMSGNAPL 439 (440)
Q Consensus 410 g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~ 439 (440)
|.+|.|+.++.++|+|||++||++++|+|+
T Consensus 202 g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~ 231 (328)
T cd00286 202 GSLNVDLRELSENLVPFPRLHFLMVGYAPL 231 (328)
T ss_pred ccccchHHHHhhhcCCCCCceeeccccCcc
Confidence 999999999999999999999999999997
No 18
>KOG1374|consensus
Probab=100.00 E-value=9.7e-50 Score=381.70 Aligned_cols=172 Identities=36% Similarity=0.689 Sum_probs=156.0
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccC-CCcccceEEEecCCCCCccccccCC
Q psy17915 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGP 79 (440)
Q Consensus 1 M~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~-~~~~~pRailvDlep~~i~~i~~~~ 79 (440)
||||||||+||||||||.+||+.+|+||||.++|......+...++.++||++. ++.|+||||||||||+||+.+.+.+
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 699999999999999999999999999999999998777777778889999886 5679999999999999999999999
Q ss_pred CCCCCCCCCcccc--cCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhcc
Q psy17915 80 YGKMFRPDNFLHG--QSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSA 154 (440)
Q Consensus 80 ~~~~~~~~~~~~~--~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~ 154 (440)
++.+|+|+|++.. +.|||||||.||.. |+++.|+|+|.|+||||.||+|.||+++||++||||||+||. +|.|.
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY~~-G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~dr 160 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGYSQ-GERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDR 160 (448)
T ss_pred hhcccCccceEEecCCCCccccccccccc-chhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHh
Confidence 9999999999875 56999999999765 999999999999999999999999999999999999999977 67889
Q ss_pred ccccccccccccc----eeeeEE
Q psy17915 155 NFKSKIFGKTKTK----MREIVH 173 (440)
Q Consensus 155 ~~~~~i~~~~~~~----mrEiIt 173 (440)
||||-|-|.-+|. +.|||.
T Consensus 161 ypkkliqtysVfPn~d~ssdVVV 183 (448)
T KOG1374|consen 161 YPKKLVQTYSVFPNQDESSDVVV 183 (448)
T ss_pred chhhhheeeeeccCCCCccceEE
Confidence 9998887766553 446653
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=2.2e-49 Score=372.35 Aligned_cols=215 Identities=46% Similarity=0.896 Sum_probs=200.9
Q ss_pred eeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCC-CCcceeEecCCCCcccccccCCCC
Q psy17915 170 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRSGPYG 248 (440)
Q Consensus 170 EiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~~~~~ 248 (440)
|||+||+||||||||.+||+++++||+++++ ........+.++||++...+ |+||+|+||+||+++++++..+.+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~----~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~ 76 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPD----SKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKR 76 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTT----SSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEET
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccc----cccccccccccceeeeccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999887 22233456778999998888 999999999999999999988877
Q ss_pred cccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCC
Q psy17915 249 KMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDR 328 (440)
Q Consensus 249 ~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~ 328 (440)
.+|+|++++.+++|+++||+.||+..|+++.++++|+||+++|+||.+++|+++||++||||||+++.++++|+++||++
T Consensus 77 ~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~ 156 (216)
T PF00091_consen 77 SLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK 156 (216)
T ss_dssp TESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHH
Q psy17915 329 MINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRD 390 (440)
Q Consensus 329 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~ 390 (440)
++++++|+|+ .. +.++++||++++|++|.+++|+++++||++|+++|.+.++++.|+|.+
T Consensus 157 ~~~~~~ilP~-~~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~~ 216 (216)
T PF00091_consen 157 PIISFSILPF-SS-EGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFNE 216 (216)
T ss_dssp EEEEEEEE-C-GG-GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHHH
T ss_pred ceeecccccc-cc-ccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcCC
Confidence 9999999999 33 899999999999999999999999999999999999999998888863
No 20
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=8e-48 Score=395.57 Aligned_cols=167 Identities=38% Similarity=0.682 Sum_probs=152.9
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCc--ccccccccccccC-CCcccceEEEecCCCCCcccccc
Q psy17915 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSD--LQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRS 77 (440)
Q Consensus 1 M~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~--~~~~~~~~~f~e~-~~~~~pRailvDlep~~i~~i~~ 77 (440)
|||||+||+||||||||.+||+++++||+++++|.+..... ...++.++||+|+ +++|+|||||||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999987643322 2345678999987 56799999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhcc
Q psy17915 78 GPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSA 154 (440)
Q Consensus 78 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~ 154 (440)
++++++|+|++++.+++|||||||+|||..|+++.|+++|+|||++|+||+||||+++||++||||||+|+. .|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 998899999999999999999999999999999999999999999999999999999999999999999977 68999
Q ss_pred ccccccccccccc
Q psy17915 155 NFKSKIFGKTKTK 167 (440)
Q Consensus 155 ~~~~~i~~~~~~~ 167 (440)
||++.|++..++.
T Consensus 161 y~~~~~~~~~v~P 173 (450)
T PLN00221 161 YGKKSKLGFTVYP 173 (450)
T ss_pred cccccceeeEeeC
Confidence 9999888776654
No 21
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=3.5e-47 Score=390.66 Aligned_cols=167 Identities=38% Similarity=0.717 Sum_probs=153.0
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCc--ccccccccccccC-CCcccceEEEecCCCCCcccccc
Q psy17915 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSD--LQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRS 77 (440)
Q Consensus 1 M~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~--~~~~~~~~~f~e~-~~~~~pRailvDlep~~i~~i~~ 77 (440)
|||||+||+||||||||.+||+++++||+++++|.++..+. ...++.++||+|+ +++|+|||||||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999987643322 2345678999987 56799999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhcc
Q psy17915 78 GPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSA 154 (440)
Q Consensus 78 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~ 154 (440)
++++++|+|++++++++|||||||+|||..|+++.|+++|+|||++|+||++|||+++||++||||||+|+. .|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 999899999999999999999999999999999999999999999999999999999999999999999976 68999
Q ss_pred ccccccccccccc
Q psy17915 155 NFKSKIFGKTKTK 167 (440)
Q Consensus 155 ~~~~~i~~~~~~~ 167 (440)
||++.+++..++.
T Consensus 161 yp~~~~~~~~v~P 173 (448)
T PTZ00335 161 YGKKSKLGFTIYP 173 (448)
T ss_pred ccccceeeEEecC
Confidence 9999888776664
No 22
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=2.9e-46 Score=385.19 Aligned_cols=166 Identities=66% Similarity=1.162 Sum_probs=153.3
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccC-CCcccceEEEecCCCCCccccccCC
Q psy17915 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGP 79 (440)
Q Consensus 1 M~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~-~~~~~pRailvDlep~~i~~i~~~~ 79 (440)
|||||+||+||||||||.+||+++++||+++++|.++...+...+++++||+|. +++|+|||||||+||++|++++.++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 999999999999999999999999999999999887655554456778999987 5679999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhcccc
Q psy17915 80 YGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANF 156 (440)
Q Consensus 80 ~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~ 156 (440)
++.+|+|++++++++|||||||+|||+.|+++.|+++|+|||++|+||++|||+++||++||||||+|+. .|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 9899999999999999999999999999999999999999999999999999999999999999999976 6899999
Q ss_pred cccccccccc
Q psy17915 157 KSKIFGKTKT 166 (440)
Q Consensus 157 ~~~i~~~~~~ 166 (440)
++.+++..++
T Consensus 161 ~~~~~~~~v~ 170 (447)
T PLN00220 161 DRMMLTFSVF 170 (447)
T ss_pred ccceeeeEEE
Confidence 8877765544
No 23
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=2.5e-45 Score=377.35 Aligned_cols=160 Identities=37% Similarity=0.672 Sum_probs=146.0
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhC-CCCCCCCCCCCcccccccccccccC------CC--cccceEEEecCCCCC
Q psy17915 1 MREIVHIQVGQCGNQTGVKFWEEISQEHG-LNEMGRYEGTSDLQLERIQVYYNEA------QG--GYIPRAILVDLEPGT 71 (440)
Q Consensus 1 M~Eii~lq~Gq~GnqiG~~~w~~~~~e~~-~~~~g~~~~~~~~~~~~~~~~f~e~------~~--~~~pRailvDlep~~ 71 (440)
|||||+||+||||||||.+||+++++||+ ++++|.+ .+++++||++. .+ +|+|||||||+||+|
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999999 7777754 24567899842 23 399999999999999
Q ss_pred ccccccCCCCCCCCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh--
Q psy17915 72 MDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ-- 149 (440)
Q Consensus 72 i~~i~~~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~-- 149 (440)
|++++.++++.+|+|++++++++|||||||+|||..|+++.|+++|+|||++|+||++|||+++||++||||||+|+.
T Consensus 74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ll 153 (465)
T PTZ00387 74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRIL 153 (465)
T ss_pred HHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred -hhhccccccccccccccc
Q psy17915 150 -NFRSANFKSKIFGKTKTK 167 (440)
Q Consensus 150 -~~~~~~~~~~i~~~~~~~ 167 (440)
.++|+||++.+++..++.
T Consensus 154 e~l~d~y~~~~~~~~~V~P 172 (465)
T PTZ00387 154 GMLEDEFPHVFRFCPVVFP 172 (465)
T ss_pred HHHHHhcccCceeeeEecC
Confidence 689999988777666664
No 24
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=3.8e-45 Score=375.79 Aligned_cols=166 Identities=35% Similarity=0.687 Sum_probs=150.5
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccC-CCcccceEEEecCCCCCccccccCC
Q psy17915 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGP 79 (440)
Q Consensus 1 M~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~-~~~~~pRailvDlep~~i~~i~~~~ 79 (440)
|||||+||+||||||||.+||+++++||+++++|.+....+.+.++.++||+|+ +++|+|||||||+||+||++++.++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 699999999999999999999999999999999877544333446778999986 5679999999999999999999999
Q ss_pred CCCCCCCCCcccccC--CCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhcc
Q psy17915 80 YGKMFRPDNFLHGQS--GAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSA 154 (440)
Q Consensus 80 ~~~~~~~~~~~~~~~--gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~ 154 (440)
++.+|+|++++++++ |||||||+||+ .|+++.|+++|+|||++|+||++|||+++||++||||||+|+. .|+|+
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 999999999999986 69999999955 7999999999999999999999999999999999999999976 68999
Q ss_pred ccccccccccccc
Q psy17915 155 NFKSKIFGKTKTK 167 (440)
Q Consensus 155 ~~~~~i~~~~~~~ 167 (440)
||++.+++..++.
T Consensus 161 y~~~~~~~~~v~P 173 (454)
T PLN00222 161 YSKKLVQTYSVFP 173 (454)
T ss_pred cCCcceeeEEecC
Confidence 9999888777664
No 25
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=5.3e-45 Score=372.84 Aligned_cols=165 Identities=36% Similarity=0.710 Sum_probs=150.4
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccC-CCcccceEEEecCCCCCccccccCCC
Q psy17915 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGPY 80 (440)
Q Consensus 2 ~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~-~~~~~pRailvDlep~~i~~i~~~~~ 80 (440)
||||+||+||||||||.+||+++++||+++++|.++..++...+++++||+|+ +++|+|||||||+||+||++++.+++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 79999999999999999999999999999999876554433456778999886 56799999999999999999999999
Q ss_pred CCCCCCCCcccccC--CCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhccc
Q psy17915 81 GKMFRPDNFLHGQS--GAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSAN 155 (440)
Q Consensus 81 ~~~~~~~~~~~~~~--gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~ 155 (440)
+++|+|++++.+++ |||||||+||+ .|+++.|+++|+|||++|+||++|||+++||++||||||+|+. .|+|+|
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 89999999999987 99999999965 6999999999999999999999999999999999999999976 689999
Q ss_pred cccccccccccc
Q psy17915 156 FKSKIFGKTKTK 167 (440)
Q Consensus 156 ~~~~i~~~~~~~ 167 (440)
|++.+++..++.
T Consensus 160 ~~~~~~~~~V~P 171 (431)
T cd02188 160 PKKLIQTYSVFP 171 (431)
T ss_pred CcceeeeEEecC
Confidence 998888777664
No 26
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1.2e-44 Score=372.19 Aligned_cols=167 Identities=66% Similarity=1.170 Sum_probs=152.7
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccC-CCcccceEEEecCCCCCccccccCC
Q psy17915 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGP 79 (440)
Q Consensus 1 M~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~-~~~~~pRailvDlep~~i~~i~~~~ 79 (440)
|||||+||+||||||||.+||+++++||+++++|.+....+...+++++||+|+ .++|+||||+||+||++|+.++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 999999999999999999999999999999999877554444446778999987 5679999999999999999999988
Q ss_pred CCCCCCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhcccc
Q psy17915 80 YGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANF 156 (440)
Q Consensus 80 ~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~ 156 (440)
++.+|+|++++.+++|+|||||+|||..|+++.|+++|+|||++|+||++|||+++||++||||||+|+. .|+|+||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 8889999999999999999999999999999999999999999999999999999999999999999976 7899999
Q ss_pred ccccccccccc
Q psy17915 157 KSKIFGKTKTK 167 (440)
Q Consensus 157 ~~~i~~~~~~~ 167 (440)
++.+++..++.
T Consensus 161 ~~~~~~~~v~P 171 (445)
T PTZ00010 161 DRIMMTFSVFP 171 (445)
T ss_pred ccceeeeEecC
Confidence 98776665553
No 27
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=2.3e-44 Score=369.41 Aligned_cols=166 Identities=37% Similarity=0.684 Sum_probs=152.5
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCc--ccccccccccccC-CCcccceEEEecCCCCCccccccC
Q psy17915 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSD--LQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSG 78 (440)
Q Consensus 2 ~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~--~~~~~~~~~f~e~-~~~~~pRailvDlep~~i~~i~~~ 78 (440)
||||+||+||||||||.+||+++++||+++++|.+....+ ...+++++||+|+ +++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 7999999999999999999999999999999987654332 2346778999987 567999999999999999999998
Q ss_pred CCCCCCCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhccc
Q psy17915 79 PYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSAN 155 (440)
Q Consensus 79 ~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~ 155 (440)
+++.+|++++++.+++|+|||||+|||..|+++.|+++|+|||++|+||++|||+++||++||||||+|+. .|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999976 789999
Q ss_pred cccccccccccc
Q psy17915 156 FKSKIFGKTKTK 167 (440)
Q Consensus 156 ~~~~i~~~~~~~ 167 (440)
|++.+++..++.
T Consensus 161 ~~~~~~~~~v~P 172 (434)
T cd02186 161 GKKSKLEFTVYP 172 (434)
T ss_pred CccceeeEEEeC
Confidence 999998877664
No 28
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=3.3e-43 Score=360.29 Aligned_cols=166 Identities=67% Similarity=1.154 Sum_probs=151.6
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccC-CCcccceEEEecCCCCCccccccCCC
Q psy17915 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGPY 80 (440)
Q Consensus 2 ~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~-~~~~~pRailvDlep~~i~~i~~~~~ 80 (440)
||||+||+||||||||.+||+++++||+++++|.+....+...+++++||+|. +++|+||||+||+||++|++++.+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 79999999999999999999999999999999876544443346778999986 56799999999999999999999888
Q ss_pred CCCCCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhccccc
Q psy17915 81 GKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANFK 157 (440)
Q Consensus 81 ~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~~ 157 (440)
+.+|++++++.+++|+|||||+|||..|+++.|+++|+|||++|+||++|||+++||++||||||+|+. .|+|+||+
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 889999999999999999999999999999999999999999999999999999999999999999976 78999999
Q ss_pred cccccccccc
Q psy17915 158 SKIFGKTKTK 167 (440)
Q Consensus 158 ~~i~~~~~~~ 167 (440)
+.+++..++.
T Consensus 161 ~~~~~~~V~P 170 (425)
T cd02187 161 RIMATFSVFP 170 (425)
T ss_pred cceEEEEEec
Confidence 9887776553
No 29
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=5.1e-43 Score=360.69 Aligned_cols=160 Identities=33% Similarity=0.629 Sum_probs=145.6
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccC-CCcccceEEEecCCCCCccccccCCCC-
Q psy17915 4 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGPYG- 81 (440)
Q Consensus 4 ii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~-~~~~~pRailvDlep~~i~~i~~~~~~- 81 (440)
||+|||||||||||.+||+++++||+++++|.+. ...+++++||.|. +++++|||||||+||+||++++.++.+
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~ 77 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGG 77 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCc
Confidence 8999999999999999999999999999887653 2245678999886 567999999999999999999886643
Q ss_pred -CCCCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhccccc
Q psy17915 82 -KMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANFK 157 (440)
Q Consensus 82 -~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~~ 157 (440)
.+|+|++++++++|||||||+|||..|+++.|+++|+|||++|+||+++||+++||++||||||+|+. .|+|+||+
T Consensus 78 ~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~ 157 (446)
T cd02189 78 TWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPE 157 (446)
T ss_pred ccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999976 78999999
Q ss_pred cccccccccc
Q psy17915 158 SKIFGKTKTK 167 (440)
Q Consensus 158 ~~i~~~~~~~ 167 (440)
+.+++..++.
T Consensus 158 ~~~~~~~v~P 167 (446)
T cd02189 158 SLLLNIVVWP 167 (446)
T ss_pred cceeeeeccC
Confidence 9888777665
No 30
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=5.1e-40 Score=338.19 Aligned_cols=259 Identities=22% Similarity=0.289 Sum_probs=199.9
Q ss_pred eeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhccccccccccc--CC---CCcceeEecCCCCcccccc
Q psy17915 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQ--GG---YIPRAILVDLEPGTMDAVR 243 (440)
Q Consensus 169 rEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~--~~---~~pRallvDle~~~i~~v~ 243 (440)
|||||||+||++|+||+||||.+...+...+++ +....+++++||++. ++ |+||+|++|++.+.-..-+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~------~~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDS------PASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCC------ccccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 799999999999999999999954444333322 223457799999865 23 9999999999975332211
Q ss_pred cC---------------CC-CcccCCCCccccc-----cCcccccCCCCcc---cchhhHHHHHHHHHHHHhhcCCCcce
Q psy17915 244 SG---------------PY-GKMFRPDNFLHGQ-----SGAANNWAKGHYT---EGVELVDAVMDLTRREAENCDCMQGF 299 (440)
Q Consensus 244 ~~---------------~~-~~~~~p~~~~~~~-----~~~~nn~~~G~~~---~g~~~~~~~~d~iR~~~E~cD~lqgf 299 (440)
.+ .| +-.|||+++.... .+..++|+.|+-. .+.+..|+++|+||+++|+||.+|||
T Consensus 75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGF 154 (493)
T cd06060 75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGF 154 (493)
T ss_pred ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccE
Confidence 11 11 2268999987663 3445566555432 34557799999999999999999999
Q ss_pred eEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCCC----CcchhhhhHHHHHHHHHHhcCCeeEEechh-hhh
Q psy17915 300 QVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKV----SDTVVEPYNAILSLSHLIETSDETFCIDNE-ALY 374 (440)
Q Consensus 300 ~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~-~l~ 374 (440)
|+++|++||| ||+|+.++|+|+|||||+.++++++.|.+.. .+.++++||++|++++|.+++|+++|+... .+|
T Consensus 155 qi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w 233 (493)
T cd06060 155 QVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLW 233 (493)
T ss_pred EEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Confidence 9999999999 6999999999999999999999999997532 257899999999999999999999999754 333
Q ss_pred hhh-----hcccCCCCCchHHHHHHHHHHhhcCcccccCCCCCCCChhhhhcCCccCCCcceecccc
Q psy17915 375 DIC-----VRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGN 436 (440)
Q Consensus 375 ~~~-----~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~g~~n~dl~~l~~nLvP~p~l~f~~~s~ 436 (440)
... ...+.++..+.++..+++|.+|.++|.++|..+.. .++.+|...|.+..| |+...+-
T Consensus 234 ~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~ 298 (493)
T cd06060 234 RKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGL 298 (493)
T ss_pred cCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhcc
Confidence 322 23456667788999999999999999999998655 568888888886443 6555443
No 31
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=1e-39 Score=329.71 Aligned_cols=136 Identities=38% Similarity=0.700 Sum_probs=129.9
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcccceEEEecCCCCCccccccCCCC
Q psy17915 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYG 81 (440)
Q Consensus 2 ~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~pRailvDlep~~i~~i~~~~~~ 81 (440)
||||+||+||||||||.+||++++.|| ++||||+||+||++|++++.++++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh-----------------------------~~pR~v~iD~e~~~i~~i~~~~~~ 51 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH-----------------------------LKARAVLIDMEEGVVNEILKGPLR 51 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh-----------------------------cCCcceeccCChhHHHHHhcCccc
Confidence 799999999999999999999999999 579999999999999999998888
Q ss_pred CCCCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhcccccc
Q psy17915 82 KMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANFKS 158 (440)
Q Consensus 82 ~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~~~ 158 (440)
++|+|++++.+++|+|||||+||+..|+++.|+++|+|||++|+||++|||+++||++||||||+|+. .++|+||++
T Consensus 52 ~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~ 131 (379)
T cd02190 52 DLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEV 131 (379)
T ss_pred cccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999976 689999999
Q ss_pred cccccccc
Q psy17915 159 KIFGKTKT 166 (440)
Q Consensus 159 ~i~~~~~~ 166 (440)
.|++..++
T Consensus 132 ~~~~~~v~ 139 (379)
T cd02190 132 YRFVTSVY 139 (379)
T ss_pred ceEEEeec
Confidence 88877655
No 32
>KOG1375|consensus
Probab=100.00 E-value=7.3e-39 Score=307.63 Aligned_cols=200 Identities=82% Similarity=1.409 Sum_probs=189.8
Q ss_pred hhhhcccccccccccCC-CCcceeEecCCCCcccccccCCCCcccCCCCccccccCcccccCCCCcccchhhHHHHHHHH
Q psy17915 208 DLQLERIQVYYNEAQGG-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286 (440)
Q Consensus 208 ~~~~~~~~~~F~e~~~~-~~pRallvDle~~~i~~v~~~~~~~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~i 286 (440)
+.+..+++++|.+...+ |+||++++||+|++++.++.+++..+|+|++ ++++ .|||+.|.++.|.
T Consensus 5 ~~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds----- 70 (369)
T KOG1375|consen 5 DLQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS----- 70 (369)
T ss_pred cceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-----
Confidence 45678899999998887 9999999999999999999999999999999 4443 8999999998887
Q ss_pred HHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeE
Q psy17915 287 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETF 366 (440)
Q Consensus 287 R~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i 366 (440)
.||.+||||++||++||||||.+++++..++++||.+.+.++++.|++. ++++++|||+.|++++|.+++|..+
T Consensus 71 -----~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~ 144 (369)
T KOG1375|consen 71 -----SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETF 144 (369)
T ss_pred -----ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCccc
Confidence 8999999999999999999999999999999999999999999999976 9999999999999999999999999
Q ss_pred EechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcccccCCCCCCCChhhhhcCCccCCCcceeccccccCC
Q psy17915 367 CIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440 (440)
Q Consensus 367 ~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~g~~n~dl~~l~~nLvP~p~l~f~~~s~~p~~ 440 (440)
++||++|+++|.+.+++..++ ++|+++||||++|.|+.++..|+||+|++||++++++|++
T Consensus 145 cidNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~ 205 (369)
T KOG1375|consen 145 CIDNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLT 205 (369)
T ss_pred ccccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhccccccccc
Confidence 999999999999999998887 8999999999999999999999999999999999999975
No 33
>KOG1376|consensus
Probab=100.00 E-value=1.2e-37 Score=297.94 Aligned_cols=158 Identities=41% Similarity=0.749 Sum_probs=146.6
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcc--cccccccccccC-CCcccceEEEecCCCCCcccccc
Q psy17915 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDL--QLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRS 77 (440)
Q Consensus 1 M~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~--~~~~~~~~f~e~-~~~~~pRailvDlep~~i~~i~~ 77 (440)
|||||+||+||+|.|||+++|+++|.||+++++|..+...+. ..+.+++||.++ .++++||++|||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 999999999999999999999999999999999998765443 344678999996 6789999999999999 999999
Q ss_pred CCCCCCCCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhcc
Q psy17915 78 GPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSA 154 (440)
Q Consensus 78 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~ 154 (440)
++|+.+|+|++++++++.++||+|+|+|+.|+|++|..+++|||.++.|..||||.++||.+||||||+++- .+.-+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999965 56667
Q ss_pred ccccc
Q psy17915 155 NFKSK 159 (440)
Q Consensus 155 ~~~~~ 159 (440)
|.+|+
T Consensus 160 ~GKks 164 (407)
T KOG1376|consen 160 YGKKS 164 (407)
T ss_pred hhhcc
Confidence 78777
No 34
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=4.2e-36 Score=277.15 Aligned_cols=185 Identities=39% Similarity=0.685 Sum_probs=171.9
Q ss_pred cccccccCCCCcceeEecCCCCcccccccCCCCcccCCCCccccccCcccccCCCCcc-----cchhhHHHHHHHHHHHH
Q psy17915 216 VYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYT-----EGVELVDAVMDLTRREA 290 (440)
Q Consensus 216 ~~F~e~~~~~~pRallvDle~~~i~~v~~~~~~~~~~p~~~~~~~~~~~nn~~~G~~~-----~g~~~~~~~~d~iR~~~ 290 (440)
.+|.++ ++.||+|++|+++++++.+..++.+..|+|++.+..+.++||||++||++ .|+++.++++|+||+++
T Consensus 3 ~~~g~g--~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~l 80 (192)
T smart00864 3 KVFGVG--GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREEL 80 (192)
T ss_pred EEEEeC--CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHHh
Confidence 345554 47999999999999999988777778899999999999999999999998 89999999999999999
Q ss_pred hhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEech
Q psy17915 291 ENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDN 370 (440)
Q Consensus 291 E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N 370 (440)
|+| ++|+++||++||||||+++.+++.++ +||++. ++++++|. ..|..+++||+++++++|.+++|.++++||
T Consensus 81 e~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN 153 (192)
T smart00864 81 EGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVIDN 153 (192)
T ss_pred cCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEEh
Confidence 999 88999999999999999999999999 999877 99999994 578899999999999999999999999999
Q ss_pred hhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcccccCCC
Q psy17915 371 EALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPG 410 (440)
Q Consensus 371 ~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~g 410 (440)
++|+++|.+.+.+ .+.|.++|++|+++|+++|+++||||
T Consensus 154 ~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 154 DALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred HHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999877776 78999999999999999999999997
No 35
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=1e-36 Score=286.40 Aligned_cols=161 Identities=41% Similarity=0.790 Sum_probs=144.4
Q ss_pred eEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccC-CCcccceEEEecCCCCCccccccCCCC
Q psy17915 3 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGPYG 81 (440)
Q Consensus 3 Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~-~~~~~pRailvDlep~~i~~i~~~~~~ 81 (440)
|||+|||||||||||.+||++++.||+++++. ..+....+.++||++. .+.++||+|+||+||+++++++..+.+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~----~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~ 76 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDS----KSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKR 76 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTS----SSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEET
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhcccccc----ccccccccccceeeeccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999998872 2223345667899886 456999999999999999999888877
Q ss_pred CCCCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhcccccc
Q psy17915 82 KMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANFKS 158 (440)
Q Consensus 82 ~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~~~ 158 (440)
.+|++++++.+++|+||||++||+..|+++.++++|+||+++|+||.+++|+++||++||||||+++. .++++||++
T Consensus 77 ~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~ 156 (216)
T PF00091_consen 77 SLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK 156 (216)
T ss_dssp TESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999955 789999999
Q ss_pred ccccccccc
Q psy17915 159 KIFGKTKTK 167 (440)
Q Consensus 159 ~i~~~~~~~ 167 (440)
.++...++.
T Consensus 157 ~~~~~~ilP 165 (216)
T PF00091_consen 157 PIISFSILP 165 (216)
T ss_dssp EEEEEEEE-
T ss_pred ceeeccccc
Confidence 887766554
No 36
>KOG2530|consensus
Probab=100.00 E-value=6.1e-33 Score=271.88 Aligned_cols=239 Identities=26% Similarity=0.390 Sum_probs=177.1
Q ss_pred eeeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccC--C---CCcceeEecCCCCccc--
Q psy17915 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQG--G---YIPRAILVDLEPGTMD-- 240 (440)
Q Consensus 168 mrEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~--~---~~pRallvDle~~~i~-- 240 (440)
||||+|||+|+.+|++|+||||++..-.+..++...+.. .....+|+|+++.+ + |+||+|+||+....-.
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~---~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~~ 77 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPG---ELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELGTLK 77 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChh---hcCcchhhhhccccccCceeeccceeEEecCccccccc
Confidence 899999999999999999999995444555443322111 11122899998754 2 9999999998742210
Q ss_pred ----------------------ccccCC-------------------------------------------CCcccCCCC
Q psy17915 241 ----------------------AVRSGP-------------------------------------------YGKMFRPDN 255 (440)
Q Consensus 241 ----------------------~v~~~~-------------------------------------------~~~~~~p~~ 255 (440)
.+++.+ .+..|||+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~t 157 (483)
T KOG2530|consen 78 YQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPRT 157 (483)
T ss_pred cchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCccc
Confidence 000000 011688887
Q ss_pred ccccccCcccccCCCCcccchhhH------HHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCc
Q psy17915 256 FLHGQSGAANNWAKGHYTEGVELV------DAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRM 329 (440)
Q Consensus 256 ~~~~~~~~~nn~~~G~~~~g~~~~------~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~ 329 (440)
+...+..--+.-+.+.|..|.+++ +++.|+||.++|+||.+|||++..++.+||| |+++.++|.|+|||+++.
T Consensus 158 l~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~~ 236 (483)
T KOG2530|consen 158 LNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKKA 236 (483)
T ss_pred cccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCCc
Confidence 766654444444466777887766 7789999999999999999999999999999 999999999999999999
Q ss_pred eeeeeecCCCCC-Ccchh---h---hhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcC
Q psy17915 330 INAFSVVPSPKV-SDTVV---E---PYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402 (440)
Q Consensus 330 i~~~~v~P~~~~-~~~~~---~---~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~ 402 (440)
++++...|.+.. .+... . ..|.++++++|.+.|++++|+.--.. +. ......+++|.+|.++
T Consensus 237 v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~-------~~----~~~~tsA~~a~~~ds~ 305 (483)
T KOG2530|consen 237 VFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASG-------LG----DLWETSAKLARAFDSI 305 (483)
T ss_pred eeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccccccc-------cc----cHHHHHHHHHhhcccc
Confidence 999999985432 22222 2 56899999999999999999842211 11 3467889999999999
Q ss_pred cccccCCCCCCCChhhhhc
Q psy17915 403 TTCLRFPGQLNADLRKLAV 421 (440)
Q Consensus 403 t~~~r~~g~~n~dl~~l~~ 421 (440)
|.|.|.-+..|..+.+.+.
T Consensus 306 tlptr~~ssS~~~~~d~ls 324 (483)
T KOG2530|consen 306 TLPTRLISSSNLRQRDTLS 324 (483)
T ss_pred cccceecchhHHHHHHHHH
Confidence 9999998886665554443
No 37
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=99.97 E-value=7.8e-33 Score=281.12 Aligned_cols=127 Identities=46% Similarity=0.852 Sum_probs=120.6
Q ss_pred eEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcccceEEEecCCCCCccccccCCCCC
Q psy17915 3 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGK 82 (440)
Q Consensus 3 Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~pRailvDlep~~i~~i~~~~~~~ 82 (440)
|||+|||||||||||.+||+++ |+||+||++|+.++.++...
T Consensus 1 eii~i~vGq~G~qig~~~w~~~--------------------------------------i~iD~e~~~i~~i~~~~~~~ 42 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL--------------------------------------ILVDLDPRVINEILQGQLSK 42 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH--------------------------------------HcccCCcchhhhhhcccccc
Confidence 8999999999999999999986 99999999999999988888
Q ss_pred CCCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhccccccc
Q psy17915 83 MFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANFKSK 159 (440)
Q Consensus 83 ~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~~~~ 159 (440)
+|++++++.+++|+|||||+||+..|+++.|+++|+|||++|+||++|||+++||++||||||+|+. .++|+||++.
T Consensus 43 ~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~ 122 (382)
T cd06059 43 LFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKIL 122 (382)
T ss_pred cCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999966 6899999998
Q ss_pred cccccccc
Q psy17915 160 IFGKTKTK 167 (440)
Q Consensus 160 i~~~~~~~ 167 (440)
|++..++.
T Consensus 123 i~~~~v~P 130 (382)
T cd06059 123 INTFSIFP 130 (382)
T ss_pred eEeEEEec
Confidence 88776654
No 38
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.97 E-value=1.1e-31 Score=268.18 Aligned_cols=226 Identities=22% Similarity=0.283 Sum_probs=193.1
Q ss_pred eeeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCCCCcceeEecCCCCcccccccCCC
Q psy17915 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPY 247 (440)
Q Consensus 168 mrEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~pRallvDle~~~i~~v~~~~~ 247 (440)
|| |..|.+|+||+.+-+++++. +.. + ...|+||+++||+++..+++++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~-----~~~--~--------------------~~~~~~~~iavntD~~~L~~l~~--- 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRH-----DKR--S--------------------GFGYCVGALAINTAKNDLKGLKH--- 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHh-----CCC--c--------------------CCccceeEEEEECCHHHHHhhhc---
Confidence 45 88999999999999999864 110 0 00178999999999999988754
Q ss_pred CcccCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCC--CcceeEEecCCCCCCcChhHHHHHHHHHhC
Q psy17915 248 GKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDC--MQGFQVTHSLGGGTGSGMGTLLLTKIREEY 325 (440)
Q Consensus 248 ~~~~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~--lqgf~i~~s~~GGtGSG~~s~lle~l~dey 325 (440)
...|++++.+++.+....+.+.+..|+++.++..|.||+++|.||. +|+|+++++++||||||+++.+++.++++|
T Consensus 50 --~~~~~ki~~g~~~t~G~GaG~~~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~ 127 (349)
T cd02202 50 --IPAEDRILIGQSEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERY 127 (349)
T ss_pred --CCCCCEEEecCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHhC
Confidence 3367888888764444444455567999999999999999999997 999999999999999999999999999999
Q ss_pred CCCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCccc
Q psy17915 326 PDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTC 405 (440)
Q Consensus 326 ~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 405 (440)
+ +++++++++|+.. +..+++||+++++++|.+++|.++++||++|+++|. .+ .+.|..+|++|++.|+.++++
T Consensus 128 ~-~~~~~iv~~P~~~--eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~---~~-~~~f~~~N~~Ia~~i~~l~~~ 200 (349)
T cd02202 128 E-EPVYALGVLPARE--EGERYSANAARSLDALSEEADAIILFDNDAWKRKGE---SV-EEAYDRINEEIARRIGLLLRA 200 (349)
T ss_pred C-ccEEEEEEecCCC--CCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhcc---ch-HHHHHHHHHHHHHHHHHHHHh
Confidence 9 8899999999953 458999999999999999999999999999999874 23 489999999999999999999
Q ss_pred ccC-----CCCCCCChhhhhcCCccCCCcceecccc
Q psy17915 406 LRF-----PGQLNADLRKLAVNMVPFPRLHFFMSGN 436 (440)
Q Consensus 406 ~r~-----~g~~n~dl~~l~~nLvP~p~l~f~~~s~ 436 (440)
+|| ||.+|+|++|+.++|.+. .+.+.+|
T Consensus 201 ~r~~~~~~~g~invD~~dv~~~L~~~---G~~~iG~ 233 (349)
T cd02202 201 GEANAGDSVGESVLDASEVINTLSGG---GFATIGY 233 (349)
T ss_pred hhcccCCCCCeEeccHHHHHHHhccC---CeEEEEE
Confidence 999 999999999999999865 5555555
No 39
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=99.96 E-value=1.1e-29 Score=253.38 Aligned_cols=127 Identities=46% Similarity=0.793 Sum_probs=119.5
Q ss_pred eEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcccceEEEecCCCCCccccccCCCCC
Q psy17915 3 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGK 82 (440)
Q Consensus 3 Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~pRailvDlep~~i~~i~~~~~~~ 82 (440)
||++||+||||||||++||+++ |+||+|+++++.++..+...
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~--------------------------------------v~idtd~~~l~~~~~~~~~~ 42 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL--------------------------------------VLVDTEPGVIDETLSGPYRL 42 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh--------------------------------------heecCCHHHHHHHhCccccc
Confidence 8999999999999999999864 99999999999998888788
Q ss_pred CCCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhccccccc
Q psy17915 83 MFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANFKSK 159 (440)
Q Consensus 83 ~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~~~~ 159 (440)
+|++.+.+++++|+||||++||+..++++.|+++|+||+++|+||++|||+++||++||||||+++. .++|+|+++.
T Consensus 43 ~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~ 122 (328)
T cd00286 43 LFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRL 122 (328)
T ss_pred ccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999965 7899999999
Q ss_pred cccccccc
Q psy17915 160 IFGKTKTK 167 (440)
Q Consensus 160 i~~~~~~~ 167 (440)
+++..++.
T Consensus 123 ~~~~~v~P 130 (328)
T cd00286 123 KITFSILP 130 (328)
T ss_pred eeEEEecC
Confidence 88877664
No 40
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.94 E-value=5.2e-27 Score=230.25 Aligned_cols=200 Identities=22% Similarity=0.287 Sum_probs=170.4
Q ss_pred eEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCCCCcceeEecCCCCcccccccCCCCcc
Q psy17915 171 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKM 250 (440)
Q Consensus 171 iItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~pRallvDle~~~i~~v~~~~~~~~ 250 (440)
|..|.+|+||+.+-+++++. ++ .-.+.+.+|++...++.+..
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~---------------------------~~~~~iainTd~~~L~~~~a------ 44 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK---------------------------EGRSAVAVNTDAQDLLGLEA------ 44 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC---------------------------CCccEEEEECcHHHHhcCCC------
Confidence 77899999999999999853 11 01357899999887766542
Q ss_pred cCCCCccc-----cccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhC
Q psy17915 251 FRPDNFLH-----GQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEY 325 (440)
Q Consensus 251 ~~p~~~~~-----~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey 325 (440)
++.++. ...|+|+||. .|++..++++|+||+.+|.||. |+++++++||||||+++.+++.++++|
T Consensus 45 --~~ki~iG~~~t~g~GaG~~~~-----~G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~ 114 (303)
T cd02191 45 --ENRVLIGQARTKGLGAGANPE-----LGAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIG 114 (303)
T ss_pred --CcEEecCCccccCCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhC
Confidence 222333 3567888875 5679999999999999999995 899999999999999999999999999
Q ss_pred CCCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCccc
Q psy17915 326 PDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTC 405 (440)
Q Consensus 326 ~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 405 (440)
+ .+++|.|.|...|..+++||+.+++++|.+++|+++++||++|.++|.+ +.+ .+.|..+|++|++.|+++|.+
T Consensus 115 ~----~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~-~~af~~~N~~ia~~i~~it~~ 188 (303)
T cd02191 115 T----LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASL-EGAFDHADEVLVRAVGGLFGA 188 (303)
T ss_pred C----CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CCh-HHHHHHHHHHHHHHHHHHHHh
Confidence 5 5666666666778899999999999999999999999999999999976 777 469999999999999999999
Q ss_pred ccCCCCCCCChhhhhcCCc
Q psy17915 406 LRFPGQLNADLRKLAVNMV 424 (440)
Q Consensus 406 ~r~~g~~n~dl~~l~~nLv 424 (440)
+|+||.+|+|++|+.+.|-
T Consensus 189 i~~~g~invD~~dv~~~l~ 207 (303)
T cd02191 189 IEIEGEINVDFADVKNVMD 207 (303)
T ss_pred hccCCcccCCHHHHHHHhc
Confidence 9999999999999988773
No 41
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=99.93 E-value=5.9e-26 Score=234.21 Aligned_cols=158 Identities=22% Similarity=0.291 Sum_probs=123.8
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccCC-----CcccceEEEecCCCCCccccc
Q psy17915 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQ-----GGYIPRAILVDLEPGTMDAVR 76 (440)
Q Consensus 2 ~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~~-----~~~~pRailvDlep~~i~~i~ 76 (440)
|||||||+||++|+||+||||.++..+.+.+++.. ...+.+++|+++. ..|+||+|++|+........+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~~------~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSPA------SELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCcc------ccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 79999999999999999999999999977765531 1244578899852 249999999999987665333
Q ss_pred cCCC----------------CCCCCCCCcccc-----cCCCCCcccccCcc---chhhhHHHHHHHHHhhhhccCCCCcc
Q psy17915 77 SGPY----------------GKMFRPDNFLHG-----QSGAANNWAKGHYT---EGVELVDAVMDLTRREAENCDCMQGF 132 (440)
Q Consensus 77 ~~~~----------------~~~~~~~~~~~~-----~~gsgnnwa~G~~~---~g~~~~~~i~~~iR~~~E~cD~lqgf 132 (440)
.+.+ +-.|+|+++..- ..+.+++|+.|+-. .+.+..|+++|+||+++|+||++|||
T Consensus 75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGF 154 (493)
T cd06060 75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGF 154 (493)
T ss_pred ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccE
Confidence 2221 113788877643 34667788877543 45678899999999999999999999
Q ss_pred eEEeeCCCCCccchhhh---hhhcccccccccccccc
Q psy17915 133 QVTHSLGGGTGSVISHQ---NFRSANFKSKIFGKTKT 166 (440)
Q Consensus 133 ~i~~Sl~GGtGSG~~~~---~~~~~~~~~~i~~~~~~ 166 (440)
++++|++||| ||+++. .|+|||+++.|++..+.
T Consensus 155 qi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~ 190 (493)
T cd06060 155 QVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLP 190 (493)
T ss_pred EEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeC
Confidence 9999999999 899987 68999999887665444
No 42
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.93 E-value=3.3e-25 Score=220.88 Aligned_cols=200 Identities=24% Similarity=0.334 Sum_probs=163.8
Q ss_pred eEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCCCCcceeEecCCCCcccccccCCCCcc
Q psy17915 171 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKM 250 (440)
Q Consensus 171 iItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~pRallvDle~~~i~~v~~~~~~~~ 250 (440)
|..|.+|+||+.+-+++++. ++ .-...+.+|++...++.+..
T Consensus 20 i~viGvGg~G~n~v~~l~~~-----~~---------------------------~~~~~iainTD~~~L~~~~a------ 61 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEE-----GV---------------------------EGVEFIAINTDAQHLKTTKA------ 61 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CceEEEEEECCHHHHhcCCC------
Confidence 88999999999999999764 11 12356889998776665532
Q ss_pred cCCCCccc-----cccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhC
Q psy17915 251 FRPDNFLH-----GQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEY 325 (440)
Q Consensus 251 ~~p~~~~~-----~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey 325 (440)
++.++. ...|++++|. .|+++.++.+|+||+.+|.||.+ +++++++||||||+++.+++.++ +|
T Consensus 62 --~~ki~iG~~~t~G~GaG~~~~-----~G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ak-e~ 130 (349)
T TIGR00065 62 --DKKILIGKKLTRGLGAGGNPE-----IGRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAK-EL 130 (349)
T ss_pred --CeEEEcCCCCCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHH-Hc
Confidence 222333 3456777765 58999999999999999999996 99999999999999886666655 55
Q ss_pred CCCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCccc
Q psy17915 326 PDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTC 405 (440)
Q Consensus 326 ~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 405 (440)
+ ++++++.|.|...|..+++||+.+++++|.+++|+++++||++|+++|.+ +.+ ...|+.+|++|+++|.++|.+
T Consensus 131 ~---~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i-~~af~~~N~iia~~i~~it~~ 205 (349)
T TIGR00065 131 G---ALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPL-NDAFKVADDVLVRAVKGISEL 205 (349)
T ss_pred C---CCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCH-HHHHHHHHHHHHHHHHhHHHh
Confidence 4 44555555555678899999999999999999999999999999999977 777 459999999999999999999
Q ss_pred ccCCCCCCCChhhhhcCCc
Q psy17915 406 LRFPGQLNADLRKLAVNMV 424 (440)
Q Consensus 406 ~r~~g~~n~dl~~l~~nLv 424 (440)
+|+||.+|+|+.|+.+-|-
T Consensus 206 ir~~g~iNvDf~dv~~vl~ 224 (349)
T TIGR00065 206 ITKPGLINIDFADVRAVMS 224 (349)
T ss_pred hccCCcCcCCHHHHHHHHh
Confidence 9999999999999988663
No 43
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.91 E-value=2e-24 Score=212.92 Aligned_cols=207 Identities=20% Similarity=0.279 Sum_probs=165.5
Q ss_pred eEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCCCCcceeEecCCCCcccccccCCCCcc
Q psy17915 171 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKM 250 (440)
Q Consensus 171 iItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~pRallvDle~~~i~~v~~~~~~~~ 250 (440)
|..|.+|+||+.+-+++++. ++ .-...+.+|++...++.+... .+-+
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~---------------------------~~~~~~a~ntD~~~L~~~~~~-~k~~ 49 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL---------------------------EGVEFIAANTDAQALAKSKAP-NKIQ 49 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CCceEEEEECCHHHHhcCCCC-cEEE
Confidence 67899999999999999864 11 013468899988777665421 1111
Q ss_pred cCCCCccccccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCce
Q psy17915 251 FRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMI 330 (440)
Q Consensus 251 ~~p~~~~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i 330 (440)
+-+ -.+...|+++||+ .|++..++..|+||+.+|.||.+ +++++++||||||+++.+++..+ +|+. .
T Consensus 50 ig~--~~t~g~Gag~~~~-----~g~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g~-~- 116 (304)
T cd02201 50 LGK--ELTRGLGAGGDPE-----VGRKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMGA-L- 116 (304)
T ss_pred cCC--CCCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcCC-C-
Confidence 111 1234567777766 56788999999999999999986 99999999999999999766555 5653 4
Q ss_pred eeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcccccCCC
Q psy17915 331 NAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPG 410 (440)
Q Consensus 331 ~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~g 410 (440)
++++.|.|...|..+++||+.+++++|.+++|+++++||++|+++|.+++.+.. .|..+|++|+++|+++|.++|+||
T Consensus 117 -~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~g 194 (304)
T cd02201 117 -TVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLITKPG 194 (304)
T ss_pred -EEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccCc
Confidence 444444444677789999999999999999999999999999999987787754 899999999999999999999999
Q ss_pred CCCCChhhhhcCCcc
Q psy17915 411 QLNADLRKLAVNMVP 425 (440)
Q Consensus 411 ~~n~dl~~l~~nLvP 425 (440)
.+|+|+.|+.+.|-.
T Consensus 195 ~invD~~dv~~vl~~ 209 (304)
T cd02201 195 LINLDFADVKTVMKN 209 (304)
T ss_pred cccCCHHHHHHHhcc
Confidence 999999999998854
No 44
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.90 E-value=3.6e-23 Score=207.03 Aligned_cols=200 Identities=23% Similarity=0.346 Sum_probs=166.0
Q ss_pred eEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCCCCcceeEecCCCCcccccccCCCCcc
Q psy17915 171 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKM 250 (440)
Q Consensus 171 iItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~pRallvDle~~~i~~v~~~~~~~~ 250 (440)
|..|.+|+||+.+-+++++. ++ . -...+.++++...++.+..
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~--~-------------------------~v~~iaiNTD~q~L~~~~a------ 72 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI--E-------------------------GAETIAINTDAQHLAMIKA------ 72 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC--C-------------------------CceEEEEECCHHHHhcCCC------
Confidence 88999999999999999853 11 0 1245889998877665432
Q ss_pred cCCCCcccc-----ccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhC
Q psy17915 251 FRPDNFLHG-----QSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEY 325 (440)
Q Consensus 251 ~~p~~~~~~-----~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey 325 (440)
|..+..| ..|+|++ +..|++..++..|.||+.+|.||. |+++++++||||||+++.+++.+++ +
T Consensus 73 --~~ki~iG~~~t~G~GaG~d-----p~~G~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~ 141 (378)
T PRK13018 73 --DKKILIGKSLTRGLGAGGD-----PEVGRKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-Q 141 (378)
T ss_pred --CcEEecCCccCCCCCCCCC-----hHHHHHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-c
Confidence 2233333 3456665 556778899999999999999998 7999999999999999999999987 4
Q ss_pred CCCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCccc
Q psy17915 326 PDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTC 405 (440)
Q Consensus 326 ~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 405 (440)
+ ...+++.+.|+ ..+...+..|+.+++++|.+++|+++++||++|+++| +.+.+. ..|+.+|++|+++|.++|.+
T Consensus 142 g-~ltv~vVt~Pf--~~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~-~af~~~N~iIa~~I~~It~~ 216 (378)
T PRK13018 142 G-ALVVGVVTKPF--KFEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIA-DAFSVADEVIAETVKGITET 216 (378)
T ss_pred C-CCeEEEEEcCc--ccccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHH-HHHHHHHHHHHHHHHhhhhh
Confidence 4 45667777887 4566788999999999999999999999999999999 777774 58999999999999999999
Q ss_pred ccCCCCCCCChhhhhcCCc
Q psy17915 406 LRFPGQLNADLRKLAVNMV 424 (440)
Q Consensus 406 ~r~~g~~n~dl~~l~~nLv 424 (440)
+|+||.+|+|+.|+.+-|-
T Consensus 217 i~~~G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 217 ITKPSLINLDFADVKSVMK 235 (378)
T ss_pred cccCCceecCHHHHHHHhc
Confidence 9999999999999988764
No 45
>PF14881 Tubulin_3: Tubulin domain
Probab=99.89 E-value=1.1e-22 Score=184.65 Aligned_cols=149 Identities=26% Similarity=0.348 Sum_probs=116.3
Q ss_pred CcccCCCCccccccCccccc--CCCCcccchhhHH------HHHHH-HHHHHhhcCCCcceeEEecCCCCCCcChhHHHH
Q psy17915 248 GKMFRPDNFLHGQSGAANNW--AKGHYTEGVELVD------AVMDL-TRREAENCDCMQGFQVTHSLGGGTGSGMGTLLL 318 (440)
Q Consensus 248 ~~~~~p~~~~~~~~~~~nn~--~~G~~~~g~~~~~------~~~d~-iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~ll 318 (440)
+-+|||+++...++-.-++. ...-|..|.+.++ +++|+ ||+++||||.+||||++.++.+||| |+++.++
T Consensus 17 r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~L 95 (180)
T PF14881_consen 17 RVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLL 95 (180)
T ss_pred cceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHH
Confidence 33688888877665322222 3444777877763 34554 9999999999999999999999999 9999999
Q ss_pred HHHHHhCCCCce-eeeeecCCCCCCc-----chhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHH
Q psy17915 319 TKIREEYPDRMI-NAFSVVPSPKVSD-----TVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLN 392 (440)
Q Consensus 319 e~l~dey~~~~i-~~~~v~P~~~~~~-----~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N 392 (440)
|+|+|||||+++ +.+++.+...... ...+..|.++++.+|.++|++++|+.... +..+.++..
T Consensus 96 e~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htS 164 (180)
T PF14881_consen 96 EHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTS 164 (180)
T ss_pred HHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHH
Confidence 999999999996 6666655432221 23456899999999999999999997200 245667999
Q ss_pred HHHHHHhhcCcccccC
Q psy17915 393 HLVSATMCGITTCLRF 408 (440)
Q Consensus 393 ~~ia~~i~~~t~~~r~ 408 (440)
.++|.+|.++|.|+|.
T Consensus 165 ai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 165 AILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHhccccCCC
Confidence 9999999999999985
No 46
>PRK09330 cell division protein FtsZ; Validated
Probab=99.86 E-value=1.2e-21 Score=196.14 Aligned_cols=202 Identities=23% Similarity=0.325 Sum_probs=166.8
Q ss_pred eeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccCCCCcceeEecCCCCcccccccCCCCc
Q psy17915 170 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGK 249 (440)
Q Consensus 170 EiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~pRallvDle~~~i~~v~~~~~~~ 249 (440)
.|..|.+|.||+.+-+++++. ++. -...+.+++|...++.+..
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~~---------------------------~v~fia~NTD~q~L~~~~a----- 57 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GIQ---------------------------GVEFIAANTDAQALLKSKA----- 57 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CCC---------------------------CceEEEEeCcHHHHhcCCC-----
Confidence 488899999999999999864 110 0134888888776655432
Q ss_pred ccCCCCcccc-----ccCcccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHh
Q psy17915 250 MFRPDNFLHG-----QSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREE 324 (440)
Q Consensus 250 ~~~p~~~~~~-----~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~de 324 (440)
|..+..| ..|+|++|. .|++..++..+.||+.+|.||.+ +|++++|||||||.++ ++..+..+
T Consensus 58 ---~~ki~lG~~~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iake 125 (384)
T PRK09330 58 ---PVKIQLGEKLTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAKE 125 (384)
T ss_pred ---CeEEEcCCcccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHHH
Confidence 1223333 356676655 78999999999999999999988 9999999999999999 55566667
Q ss_pred CCCCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcc
Q psy17915 325 YPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 404 (440)
Q Consensus 325 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 404 (440)
|+ +++++|+|.|...|..+++||+.++++.|.+++|.+|+++|++|.+++.+.+.+ ...|+.+|.+|++.+.+++.
T Consensus 126 ~g---~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l-~~Af~~ad~vL~~~v~~It~ 201 (384)
T PRK09330 126 LG---ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPL-LDAFKAADDVLRQAVQGITD 201 (384)
T ss_pred cC---CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 75 667777777778899999999999999999999999999999999999877777 45999999999999999999
Q ss_pred cccCCCCCCCChhhhhcCCc
Q psy17915 405 CLRFPGQLNADLRKLAVNMV 424 (440)
Q Consensus 405 ~~r~~g~~n~dl~~l~~nLv 424 (440)
.+++||.+|+|+.|+.+-|-
T Consensus 202 ~i~~pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 202 LITKPGLINLDFADVKTVMS 221 (384)
T ss_pred HHhcCCcccCCHHHHHHHHh
Confidence 99999999999999988664
No 47
>KOG2530|consensus
Probab=99.86 E-value=4.3e-22 Score=195.82 Aligned_cols=159 Identities=27% Similarity=0.413 Sum_probs=110.1
Q ss_pred CeeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccCC---C--cccceEEEecCCCCCcccc
Q psy17915 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQ---G--GYIPRAILVDLEPGTMDAV 75 (440)
Q Consensus 1 M~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~~---~--~~~pRailvDlep~~i~~i 75 (440)
||||+|||+|+.+|.+|+||||++...+++.++...+...- ..+ +++|+++. + .|+||++++|+........
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~~~--~~n-dvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~~ 77 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPGEL--CPN-DVLYRTGRTDHGQITYTPRLLLVDLKGELGTLK 77 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChhhc--Ccc-hhhhhccccccCceeeccceeEEecCccccccc
Confidence 99999999999999999999999999999887654332211 111 78999863 2 3999999999876544211
Q ss_pred ccCCC------------------------------CC-------------------------------------CCCCCC
Q psy17915 76 RSGPY------------------------------GK-------------------------------------MFRPDN 88 (440)
Q Consensus 76 ~~~~~------------------------------~~-------------------------------------~~~~~~ 88 (440)
..+.+ .. .|+|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~t 157 (483)
T KOG2530|consen 78 YQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPRT 157 (483)
T ss_pred cchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCccc
Confidence 11100 00 122222
Q ss_pred ccc-----ccCCCCCcccccCccchhh-hHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhccccccc
Q psy17915 89 FLH-----GQSGAANNWAKGHYTEGVE-LVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANFKSK 159 (440)
Q Consensus 89 ~~~-----~~~gsgnnwa~G~~~~g~~-~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~~~~ 159 (440)
+.. ...++-++|..|+-..-+. +.+++.|++|.++|+||++|||+++..+.+|+| |+++. +++|||+++.
T Consensus 158 l~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~~ 236 (483)
T KOG2530|consen 158 LNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKKA 236 (483)
T ss_pred cccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCCc
Confidence 211 1122223333443222221 688899999999999999999999999999976 99977 6899999999
Q ss_pred cccc
Q psy17915 160 IFGK 163 (440)
Q Consensus 160 i~~~ 163 (440)
+++-
T Consensus 237 v~tw 240 (483)
T KOG2530|consen 237 VFTW 240 (483)
T ss_pred eecc
Confidence 9643
No 48
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.75 E-value=4e-19 Score=164.00 Aligned_cols=105 Identities=33% Similarity=0.563 Sum_probs=93.7
Q ss_pred cccccCCCcccceEEEecCCCCCccccccCCCCCCCCCCCcccccCCCCCcccccCcc-----chhhhHHHHHHHHHhhh
Q psy17915 49 VYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYT-----EGVELVDAVMDLTRREA 123 (440)
Q Consensus 49 ~~f~e~~~~~~pRailvDlep~~i~~i~~~~~~~~~~~~~~~~~~~gsgnnwa~G~~~-----~g~~~~~~i~~~iR~~~ 123 (440)
.||.++ ++.||+|++|+||++++.+..++...+|++++.+..+.++||||++||+. .|+++.++++|+||+++
T Consensus 3 ~~~g~g--~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~l 80 (192)
T smart00864 3 KVFGVG--GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREEL 80 (192)
T ss_pred EEEEeC--CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHHh
Confidence 355554 68899999999999999988777778899999999999999999999998 89999999999999999
Q ss_pred hccCCCCcceEEeeCCCCCccchhhh---hhhccccccc
Q psy17915 124 ENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANFKSK 159 (440)
Q Consensus 124 E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~~~~ 159 (440)
|+| ++|+++||++||||||+++. .++ +|+.+.
T Consensus 81 e~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~ 115 (192)
T smart00864 81 EGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT 115 (192)
T ss_pred cCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE
Confidence 999 99999999999999999965 556 777654
No 49
>KOG1375|consensus
Probab=99.61 E-value=2.9e-16 Score=151.96 Aligned_cols=103 Identities=70% Similarity=1.198 Sum_probs=90.2
Q ss_pred CcccccccccccccCC-CcccceEEEecCCCCCccccccCCCCCCCCCCCcccccCCCCCcccccCccchhhhHHHHHHH
Q psy17915 40 SDLQLERIQVYYNEAQ-GGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDL 118 (440)
Q Consensus 40 ~~~~~~~~~~~f~e~~-~~~~pRailvDlep~~i~~i~~~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~ 118 (440)
++.+.++++++|++.. ++|+||+|+|||||++++.++.+++..+|+|++ +++| +|||+.|.++.|.
T Consensus 4 ~~~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds---- 70 (369)
T KOG1375|consen 4 SDLQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS---- 70 (369)
T ss_pred ccceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc----
Confidence 5667889999999874 569999999999999999999999999999999 4444 9999999999888
Q ss_pred HHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhccccccccc
Q psy17915 119 TRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANFKSKIF 161 (440)
Q Consensus 119 iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~~~~i~ 161 (440)
.||++|||+++||++||||||+++. .++.+||.+-+.
T Consensus 71 ------~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~ 110 (369)
T KOG1375|consen 71 ------SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMN 110 (369)
T ss_pred ------ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcc
Confidence 9999999999999999999999976 346677765543
No 50
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.42 E-value=3.2e-13 Score=135.42 Aligned_cols=120 Identities=20% Similarity=0.319 Sum_probs=96.5
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcccceEEEecCCCCCccccccCCCCCC
Q psy17915 4 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKM 83 (440)
Q Consensus 4 ii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~pRailvDlep~~i~~i~~~~~~~~ 83 (440)
|..|-+|+||+.|-+++++. +. ..+.+|+||+|+||+|+..+++++. .
T Consensus 3 i~viGvGg~G~niv~~l~~~-----~~----------------------~~~~~~~~~~iavntD~~~L~~l~~-----~ 50 (349)
T cd02202 3 VLIIGVGQAGGRIVDALNRH-----DK----------------------RSGFGYCVGALAINTAKNDLKGLKH-----I 50 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHh-----CC----------------------CcCCccceeEEEEECCHHHHHhhhc-----C
Confidence 78899999999999998762 00 0123478999999999999887654 3
Q ss_pred CCCCCccccc-----CCCCCcccccCccchhhhHHHHHHHHHhhhhccCC--CCcceEEeeCCCCCccchhhh---hhhc
Q psy17915 84 FRPDNFLHGQ-----SGAANNWAKGHYTEGVELVDAVMDLTRREAENCDC--MQGFQVTHSLGGGTGSVISHQ---NFRS 153 (440)
Q Consensus 84 ~~~~~~~~~~-----~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~--lqgf~i~~Sl~GGtGSG~~~~---~~~~ 153 (440)
..++.++.++ .|+|+||.. |++..++..|.||+++|.||. +++|+++|+++||||||++.. .+++
T Consensus 51 ~~~~ki~~g~~~t~G~GaG~~~~~-----G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke 125 (349)
T cd02202 51 PAEDRILIGQSEVKGHGVGADREL-----GAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKE 125 (349)
T ss_pred CCCCEEEecCcccCCCCCCCChHH-----HHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHH
Confidence 3567777766 478888865 689999999999999999997 999999999999999999954 6788
Q ss_pred cccccccc
Q psy17915 154 ANFKSKIF 161 (440)
Q Consensus 154 ~~~~~~i~ 161 (440)
+|+ +.++
T Consensus 126 ~~~-~~~~ 132 (349)
T cd02202 126 RYE-EPVY 132 (349)
T ss_pred hCC-ccEE
Confidence 887 4443
No 51
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.42 E-value=1e-13 Score=117.01 Aligned_cols=64 Identities=34% Similarity=0.536 Sum_probs=50.0
Q ss_pred eeeEEeecCCchhHHHHHHHHHHHHhcCCCCCCCccCCchhhhcccccccccccC--C---CCcceeEecCCCCc
Q psy17915 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQG--G---YIPRAILVDLEPGT 238 (440)
Q Consensus 169 rEiItiq~Gq~gnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~--~---~~pRallvDle~~~ 238 (440)
|||||||+|+.+|+||+||||. ||..+..+ .+.+....+++++||++.+ + |+||+|++|++.+.
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~--Qe~~~~y~----~~~~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~l 69 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNI--QESYLPYD----PDEKPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGL 69 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhh--hhcccccC----ccccCcccCCceEEecccCcCCCeeECCcEEEEecCCCc
Confidence 7999999999999999999998 77665322 2222123477999999754 2 99999999999764
No 52
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.41 E-value=1.7e-12 Score=127.86 Aligned_cols=148 Identities=20% Similarity=0.269 Sum_probs=128.1
Q ss_pred CCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCCCCcchhhh
Q psy17915 269 KGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEP 348 (440)
Q Consensus 269 ~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~~~~~~~~~ 348 (440)
.+....|++..++..+.|++.++..| -++++.+++||||+|.++.+++.+++ ...+.+++.++|+. .|.....
T Consensus 72 Ga~P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~--~EG~~r~ 144 (338)
T COG0206 72 GANPEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFS--FEGSPRM 144 (338)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecch--hcCchHH
Confidence 34477899999999999998887666 56899999999999999999999998 46777888888884 5556777
Q ss_pred hHHHHHHHHHHhcCCeeEEechhhhhhhhhcccCCCCCchHHHHHHHHHHhhcCcccccCCCCCCCChhhhhcCCcc
Q psy17915 349 YNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVP 425 (440)
Q Consensus 349 yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~g~~n~dl~~l~~nLvP 425 (440)
-|+..++..|.+++|.+|.++|+.+.+... ...+ ...|...|.++++.+.+++..+.-||.+|+|+.|+.+.|-.
T Consensus 145 ~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~ 219 (338)
T COG0206 145 ENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKG 219 (338)
T ss_pred HHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhc
Confidence 899999999999999999999999988775 4444 56788999999999999999999999999999999887765
No 53
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.16 E-value=4.6e-11 Score=100.83 Aligned_cols=65 Identities=29% Similarity=0.476 Sum_probs=49.2
Q ss_pred eeEEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccCC---C--cccceEEEecCCCCCc
Q psy17915 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQ---G--GYIPRAILVDLEPGTM 72 (440)
Q Consensus 2 ~Eii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~~---~--~~~pRailvDlep~~i 72 (440)
|||||||+|+..|.||+||||+++..+..+++... ..-..+++|+++. + .|+||+|++|+....-
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~~------~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lG 70 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQESYLPYDPDEKP------SEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGLG 70 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhhhcccccCccccC------cccCCceEEecccCcCCCeeECCcEEEEecCCCcC
Confidence 79999999999999999999998887744433221 1124579999873 2 3999999999966543
No 54
>PF14881 Tubulin_3: Tubulin domain
Probab=99.15 E-value=3.5e-11 Score=109.45 Aligned_cols=63 Identities=25% Similarity=0.363 Sum_probs=49.3
Q ss_pred CCcccccCccchh-hhHHHHHHH-HHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhcccccccc
Q psy17915 97 ANNWAKGHYTEGV-ELVDAVMDL-TRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANFKSKI 160 (440)
Q Consensus 97 gnnwa~G~~~~g~-~~~~~i~~~-iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~~~~i 160 (440)
-.+|..|.-.... +..++++|+ ||+++|+||.+||||++..+.+|+| |++++ +|+|||+|++|
T Consensus 40 Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~Le~L~DEy~k~~i 107 (180)
T PF14881_consen 40 FDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLLEHLRDEYPKKPI 107 (180)
T ss_pred cccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHHHHHHHHcCCCce
Confidence 3556666433222 234456665 9999999999999999999999987 99987 68999999997
No 55
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=98.79 E-value=9.5e-09 Score=101.31 Aligned_cols=110 Identities=21% Similarity=0.206 Sum_probs=79.9
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcccceEEEecCCCCCccccccCCCCCC
Q psy17915 4 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKM 83 (440)
Q Consensus 4 ii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~pRailvDlep~~i~~i~~~~~~~~ 83 (440)
|..|-+|+||+.+-+++++. ++ .-.+.+.||+|...++.+.. +.+-+
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~---------------------------~~~~~iainTd~~~L~~~~a-~~ki~ 49 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK---------------------------EGRSAVAVNTDAQDLLGLEA-ENRVL 49 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC---------------------------CCccEEEEECcHHHHhcCCC-CcEEe
Confidence 77899999999999998752 00 00467788887776654431 11101
Q ss_pred CCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhcccc
Q psy17915 84 FRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANF 156 (440)
Q Consensus 84 ~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~ 156 (440)
+-+ -.+...|+|+||+.| ++..++++++||+.+|.||. |+++++++||||||++.. .+++.|+
T Consensus 50 iG~--~~t~g~GaG~~~~~G-----~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~ 115 (303)
T cd02191 50 IGQ--ARTKGLGAGANPELG-----AEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT 115 (303)
T ss_pred cCC--ccccCCCCCCCHHHH-----HHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC
Confidence 111 123457999999876 58889999999999999994 999999999999999954 5676665
No 56
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=98.61 E-value=6.8e-08 Score=95.54 Aligned_cols=110 Identities=20% Similarity=0.239 Sum_probs=78.5
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcccceEEEecCCCCCccccccCCCCCC
Q psy17915 4 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKM 83 (440)
Q Consensus 4 ii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~pRailvDlep~~i~~i~~~~~~~~ 83 (440)
|..|-+|+||+.+-+.+++. ++ . -...+.+|+|...++.+.. +.+-+
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~------------------------~---~~~~~a~ntD~~~L~~~~~-~~k~~ 49 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL------------------------E---GVEFIAANTDAQALAKSKA-PNKIQ 49 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC------------------------C---CceEEEEECCHHHHhcCCC-CcEEE
Confidence 67889999999999988762 00 0 0456677777665554332 11111
Q ss_pred CCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh--hhhcccc
Q psy17915 84 FRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ--NFRSANF 156 (440)
Q Consensus 84 ~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~--~~~~~~~ 156 (440)
+-+ -.+...|+|+||+.| ++..++.+|.||+.+|.||.+ +++++++||||||++.. ++.++|+
T Consensus 50 ig~--~~t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~e~g 114 (304)
T cd02201 50 LGK--ELTRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAKEMG 114 (304)
T ss_pred cCC--CCCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHHHcC
Confidence 111 124457999999977 567888899999999999985 99999999999999865 5566665
No 57
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=98.61 E-value=7.3e-08 Score=96.67 Aligned_cols=110 Identities=24% Similarity=0.258 Sum_probs=77.9
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcccceEEEecCCCCCccccccCCCCCC
Q psy17915 4 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKM 83 (440)
Q Consensus 4 ii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~pRailvDlep~~i~~i~~~~~~~~ 83 (440)
|..|-+|+||+.+-+.+++. ++ .-...+.+|+|...++.+.. +.+-+
T Consensus 20 i~viGvGg~G~n~v~~l~~~-----~~---------------------------~~~~~iainTD~~~L~~~~a-~~ki~ 66 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEE-----GV---------------------------EGVEFIAINTDAQHLKTTKA-DKKIL 66 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CceEEEEEECCHHHHhcCCC-CeEEE
Confidence 67899999999999988763 00 01456667777655544321 11111
Q ss_pred CCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh--hhhcccc
Q psy17915 84 FRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ--NFRSANF 156 (440)
Q Consensus 84 ~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~--~~~~~~~ 156 (440)
+-+ -.+...|+|+||+. |++..++.+|.||+.+|.||.+ ++++|++||||||++.. .+.++++
T Consensus 67 iG~--~~t~G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ake~~ 131 (349)
T TIGR00065 67 IGK--KLTRGLGAGGNPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAKELG 131 (349)
T ss_pred cCC--CCCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHHHcC
Confidence 111 12334689999996 5899999999999999999996 89999999999999854 4555654
No 58
>PRK13018 cell division protein FtsZ; Provisional
Probab=98.38 E-value=7.7e-07 Score=89.84 Aligned_cols=110 Identities=22% Similarity=0.324 Sum_probs=75.3
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcccceEEEecCCCCCccccccCCCCCC
Q psy17915 4 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKM 83 (440)
Q Consensus 4 ii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~pRailvDlep~~i~~i~~~~~~~~ 83 (440)
|..|-+|+||+.+-+++++. ++ . + ...|.|++|...++.+... .+-+
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~--------------~----------~---v~~iaiNTD~q~L~~~~a~-~ki~ 77 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI--------------E----------G---AETIAINTDAQHLAMIKAD-KKIL 77 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC--------------C----------C---ceEEEEECCHHHHhcCCCC-cEEe
Confidence 67889999999999888752 00 0 0 4556777776555433211 0001
Q ss_pred CCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh--hhhcccc
Q psy17915 84 FRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ--NFRSANF 156 (440)
Q Consensus 84 ~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~--~~~~~~~ 156 (440)
+-+ -++...|+|++|..| ++..++.+|.||+.+|.||. |+++++++||||||++.. .+..+++
T Consensus 78 iG~--~~t~G~GaG~dp~~G-----~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake~g 142 (378)
T PRK13018 78 IGK--SLTRGLGAGGDPEVG-----RKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKEQG 142 (378)
T ss_pred cCC--ccCCCCCCCCChHHH-----HHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHHcC
Confidence 100 123457899999977 56677888999999999998 899999999999999954 3444554
No 59
>PRK09330 cell division protein FtsZ; Validated
Probab=98.01 E-value=1.1e-05 Score=81.55 Aligned_cols=110 Identities=21% Similarity=0.226 Sum_probs=75.8
Q ss_pred EEEEecCchhHHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccccccccCCCcccceEEEecCCCCCccccccCCCCCC
Q psy17915 4 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKM 83 (440)
Q Consensus 4 ii~lq~Gq~GnqiG~~~w~~~~~e~~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~pRailvDlep~~i~~i~~~~~~~~ 83 (440)
|..|-||.||+.+=+++++. ++ . . ...|.+++|...++.+... .+-+
T Consensus 16 IkViGvGG~G~Nav~~m~~~-----~~---------~-----~-------------v~fia~NTD~q~L~~~~a~-~ki~ 62 (384)
T PRK09330 16 IKVIGVGGGGGNAVNRMIEE-----GI---------Q-----G-------------VEFIAANTDAQALLKSKAP-VKIQ 62 (384)
T ss_pred EEEEEECCcHHHHHHHHHHc-----CC---------C-----C-------------ceEEEEeCcHHHHhcCCCC-eEEE
Confidence 67889999999998888762 10 0 0 2345666665544432111 0000
Q ss_pred CCCCCcccccCCCCCcccccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh--hhhcccc
Q psy17915 84 FRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ--NFRSANF 156 (440)
Q Consensus 84 ~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~--~~~~~~~ 156 (440)
+- .-.+...|+|+||. .|++..++..+.||+.+|.||.+ +++++++||||||.+.. .+.++++
T Consensus 63 lG--~~~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaapvIA~iake~g 127 (384)
T PRK09330 63 LG--EKLTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAPVVAEIAKELG 127 (384)
T ss_pred cC--CcccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHHHHHHHHHHcC
Confidence 10 11234469999999 45888899999999999999998 89999999999999954 5566665
No 60
>PF13809 Tubulin_2: Tubulin like
Probab=96.71 E-value=0.041 Score=55.50 Aligned_cols=101 Identities=24% Similarity=0.167 Sum_probs=58.5
Q ss_pred cccccCcccccCCCCcccchhhHHHHHHHHHHHHh---------hc-CCCcceeEEecCCCCCCcChhHHHHHHHHHhC-
Q psy17915 257 LHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAE---------NC-DCMQGFQVTHSLGGGTGSGMGTLLLTKIREEY- 325 (440)
Q Consensus 257 ~~~~~~~~nn~~~G~~~~g~~~~~~~~d~iR~~~E---------~c-D~lqgf~i~~s~~GGtGSG~~s~lle~l~dey- 325 (440)
.....|++..-+.|.... ....+++.+.|++.++ .. +.---+.|+.|++||||||.---++-.||+.+
T Consensus 99 ~~~~~GAgq~R~~GRla~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~ 177 (345)
T PF13809_consen 99 TPLSAGAGQIRALGRLAF-FSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILK 177 (345)
T ss_pred CchhcCCCCcccchHHHH-HHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhh
Confidence 334566666666555322 1112344444444444 11 11113678899999999999888888888866
Q ss_pred ----CCCceeeeeecCCCCCCc---chhhhhHHHHHHHHH
Q psy17915 326 ----PDRMINAFSVVPSPKVSD---TVVEPYNAILSLSHL 358 (440)
Q Consensus 326 ----~~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~l 358 (440)
....+..+.+.|...... ......|+.=+|.+|
T Consensus 178 ~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL 217 (345)
T PF13809_consen 178 QPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKEL 217 (345)
T ss_pred cccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHH
Confidence 344678888999732221 123334665555555
No 61
>PF13809 Tubulin_2: Tubulin like
Probab=94.68 E-value=0.17 Score=51.01 Aligned_cols=58 Identities=24% Similarity=0.160 Sum_probs=35.7
Q ss_pred ccccCCCCCcccccCc---cchhhhHHHHHHHHHh-----hhhcc-CCCCcceEEeeCCCCCccchh
Q psy17915 90 LHGQSGAANNWAKGHY---TEGVELVDAVMDLTRR-----EAENC-DCMQGFQVTHSLGGGTGSVIS 147 (440)
Q Consensus 90 ~~~~~gsgnnwa~G~~---~~g~~~~~~i~~~iR~-----~~E~c-D~lqgf~i~~Sl~GGtGSG~~ 147 (440)
.....|||..-+.|.. ..-.++.+.+.+.++. ...+. +.=--+.++.|++||||||+-
T Consensus 99 ~~~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~ 165 (345)
T PF13809_consen 99 TPLSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMF 165 (345)
T ss_pred CchhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHH
Confidence 3446788888887743 3344455555555552 11122 111136799999999999976
No 62
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=61.19 E-value=8.1 Score=32.95 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHh
Q psy17915 279 VDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREE 324 (440)
Q Consensus 279 ~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~de 324 (440)
.+...++|++.+++++. +|+.++.++ |||-. -....+|.+.++
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp~-n~~~a~e~~~~~ 83 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSAEM-NAEMAIEMLDGE 83 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CChHH-HHHHHHHhcCCC
Confidence 34567788889999999 999999999 76542 233344555434
No 63
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=54.81 E-value=1.3e+02 Score=30.10 Aligned_cols=60 Identities=22% Similarity=0.106 Sum_probs=38.1
Q ss_pred EEeeCCCCCccchhhhhhhccccccccccccccceeeeEEeecCCchhHHHHHHHHHHHHhcCC
Q psy17915 134 VTHSLGGGTGSVISHQNFRSANFKSKIFGKTKTKMREIVHIQVGQCGNQTGVKFWEEISQEHGL 197 (440)
Q Consensus 134 i~~Sl~GGtGSG~~~~~~~~~~~~~~i~~~~~~~mrEiItiq~Gq~gnqiG~~~W~~~~~e~~~ 197 (440)
++..+.|-||||= ||.+|+--..+.|=+.|..=. -||=+.|--.-+ =...||.++.|-..
T Consensus 88 ~I~~VYGPTG~GK-SqLlRNLis~~lI~P~PETVf--FItP~~~mIpp~-E~~aW~~Ql~EgNY 147 (369)
T PF02456_consen 88 FIGVVYGPTGSGK-SQLLRNLISCQLIQPPPETVF--FITPQKDMIPPQ-EITAWETQLCEGNY 147 (369)
T ss_pred eEEEEECCCCCCH-HHHHHHhhhcCcccCCCCceE--EECCCCCCCCHH-HHHHHHHHHHhcCC
Confidence 7888899999984 567777777777766662210 123334433332 34679999998543
No 64
>PLN02847 triacylglycerol lipase
Probab=53.71 E-value=44 Score=36.12 Aligned_cols=62 Identities=24% Similarity=0.276 Sum_probs=40.2
Q ss_pred CCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHH--hCCCCceeeee
Q psy17915 269 KGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIRE--EYPDRMINAFS 334 (440)
Q Consensus 269 ~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~d--ey~~~~i~~~~ 334 (440)
.|++...+.+.+.+...|++.++++...+=+.+=||+|||+ ++.+.-.|++ +|++...++|+
T Consensus 224 ~Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGV----AALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 224 CGMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGT----AALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHH----HHHHHHHHhcCCCCCCceEEEec
Confidence 45555556777888888888888887654444558998764 4555555665 45555444554
No 65
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=47.66 E-value=25 Score=29.18 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhcCCCcceeEEecCCCCCC
Q psy17915 279 VDAVMDLTRREAENCDCMQGFQVTHSLGGGTG 310 (440)
Q Consensus 279 ~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtG 310 (440)
.+.+.+++++.+++.+.-+++.++.++.|||-
T Consensus 40 ~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 40 IEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp HHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 45677888888888888899999999998753
No 66
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=45.96 E-value=53 Score=29.77 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCCCCcchhhhhHHHHHHHHH
Q psy17915 279 VDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHL 358 (440)
Q Consensus 279 ~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l 358 (440)
...+.+.|++.+|+ .+. -++.+.+-|+- -.++.++-.|+.+||...+ ..++|+...+..-.+ ..-.-+..|
T Consensus 28 k~~L~~~i~~lie~--G~~--~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~W~~--~~q~~y~~i 98 (177)
T PF06908_consen 28 KKALKKQIIELIEE--GVR--WFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNNWNE--ANQERYQSI 98 (177)
T ss_dssp HHHHHHHHHHHHTT--T----EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTTS-H--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCC--EEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhcCCH--HHHHHHHHH
Confidence 34455667777764 332 22233333333 2467778888999996544 567887544432111 112234445
Q ss_pred HhcCCeeEEech
Q psy17915 359 IETSDETFCIDN 370 (440)
Q Consensus 359 ~e~sd~~i~~~N 370 (440)
.+.||-+..+..
T Consensus 99 l~~aD~v~~vs~ 110 (177)
T PF06908_consen 99 LEQADFVVVVSE 110 (177)
T ss_dssp HHH-SEEEESSS
T ss_pred HHhCCEEEEccC
Confidence 555666665543
No 67
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=42.76 E-value=40 Score=29.11 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=39.5
Q ss_pred CCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecC
Q psy17915 270 GHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVP 337 (440)
Q Consensus 270 G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P 337 (440)
|++.....+...+.+.+++...++..-+-+.+=||+||+ ++..+...++...+.+.+-.++.-|
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~~~~~~~~~~fg~ 65 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRGLGRLVRVYTFGP 65 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhccCCCceEEEEeCC
Confidence 566666777777777777777665555445555899764 5556666676654444444444433
No 68
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=41.71 E-value=1e+02 Score=31.01 Aligned_cols=93 Identities=20% Similarity=0.213 Sum_probs=57.4
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCCC-CcchhhhhHHH
Q psy17915 274 EGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKV-SDTVVEPYNAI 352 (440)
Q Consensus 274 ~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~~-~~~~~~~yN~~ 352 (440)
...+.|..+.+.|+... +..+||.|+|+.+ |= -.++.+++.+-...+|-.+++=+-.|.... ++....-++++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--Tm-eeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--TM-AYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--hH-HHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 56777888888887755 5688999999765 22 456777777655556666777778887543 44455445554
Q ss_pred HHHHHHHhcCCeeEEechhhhh
Q psy17915 353 LSLSHLIETSDETFCIDNEALY 374 (440)
Q Consensus 353 lsl~~l~e~sd~~i~~~N~~l~ 374 (440)
. +..-.......+.|+. .++
T Consensus 137 ~-~A~~~~~~GV~V~f~~-~i~ 156 (335)
T PRK09461 137 Y-VAANYPINEVTLFFNN-KLF 156 (335)
T ss_pred H-HHcCCCCCeEEEEECC-Eee
Confidence 4 3221223345555554 443
No 69
>PLN02408 phospholipase A1
Probab=41.49 E-value=66 Score=32.70 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHhhcCCCc-ceeEE-ecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCCCCcc
Q psy17915 277 ELVDAVMDLTRREAENCDCMQ-GFQVT-HSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDT 344 (440)
Q Consensus 277 ~~~~~~~d~iR~~~E~cD~lq-gf~i~-~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~~~~~ 344 (440)
.+.+++.+.|++.+++...-+ .+.++ ||+||+ ++...+-.|+..++..+.+....+-+|..++.
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGA----LAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN~ 244 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGAA----LATLTAYDIKTTFKRAPMVTVISFGGPRVGNR 244 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHHH----HHHHHHHHHHHhcCCCCceEEEEcCCCCcccH
Confidence 567888888999988774322 34555 788754 67777777888877665444445556666653
No 70
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=41.13 E-value=12 Score=17.76 Aligned_cols=8 Identities=50% Similarity=1.456 Sum_probs=5.9
Q ss_pred CCccCCCc
Q psy17915 422 NMVPFPRL 429 (440)
Q Consensus 422 nLvP~p~l 429 (440)
.|+||||.
T Consensus 4 GlI~fpR~ 11 (11)
T PF08259_consen 4 GLIPFPRV 11 (11)
T ss_pred cccccCCC
Confidence 57888873
No 71
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=40.76 E-value=61 Score=27.80 Aligned_cols=28 Identities=36% Similarity=0.716 Sum_probs=21.8
Q ss_pred CCCcChhHHHHHHHHHhCCC-Cceeeeee
Q psy17915 308 GTGSGMGTLLLTKIREEYPD-RMINAFSV 335 (440)
Q Consensus 308 GtGSG~~s~lle~l~dey~~-~~i~~~~v 335 (440)
|-|.|+|..+++.||.++|+ ..+++...
T Consensus 7 GQGGGiG~~iv~~lr~~~~~~~eI~AlGT 35 (131)
T PF12953_consen 7 GQGGGIGKQIVEKLRKELPEEVEIIALGT 35 (131)
T ss_pred CCCChhHHHHHHHHHHhCCCCcEEEEEeh
Confidence 44558999999999999998 56665543
No 72
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=40.41 E-value=32 Score=34.52 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=31.2
Q ss_pred ccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchh
Q psy17915 105 YTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVIS 147 (440)
Q Consensus 105 ~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~ 147 (440)
-..|.+..++..+.|++.++..| =+.++..++||||+|.+
T Consensus 75 P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaa 114 (338)
T COG0206 75 PEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAA 114 (338)
T ss_pred cHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCcccccc
Confidence 34456777777777777777776 56789999999999987
No 73
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=38.09 E-value=47 Score=27.81 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhcCCCcceeEEecCCCCCC
Q psy17915 279 VDAVMDLTRREAENCDCMQGFQVTHSLGGGTG 310 (440)
Q Consensus 279 ~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtG 310 (440)
.+++.+++++.+++.+.-+|+.++.++-|||-
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 45667778888888877789999999988754
No 74
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=37.99 E-value=49 Score=27.58 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhcCCCcceeEEecCCCCCC
Q psy17915 279 VDAVMDLTRREAENCDCMQGFQVTHSLGGGTG 310 (440)
Q Consensus 279 ~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtG 310 (440)
.+++.+++++.+++.+.=+++.++.++-|||-
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 45677788888888776789999999999875
No 75
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=35.56 E-value=32 Score=29.30 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhh---hhhcccccccccccc
Q psy17915 112 VDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQ---NFRSANFKSKIFGKT 164 (440)
Q Consensus 112 ~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~---~~~~~~~~~~i~~~~ 164 (440)
.+...++|++.++++|. .|..++..+ |||- +... ++.++..+-.|...|
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp--~n~~~a~e~~~~~~~v~~~daP 92 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSAE--MNAEMAIEMLDGEKKIIIIDAP 92 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CChH--HHHHHHHHhcCCCCcEEEECCc
Confidence 34566788888999999 999999999 7755 4433 444434333334434
No 76
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=34.43 E-value=42 Score=27.73 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhhhhhccccc
Q psy17915 112 VDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQNFRSANFK 157 (440)
Q Consensus 112 ~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~~~~~~~~~ 157 (440)
.+.+.+++++.+++.+.-+|+.++.++.|||-.-... .+..++++
T Consensus 40 ~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~-~~~~~~~~ 84 (116)
T PF03610_consen 40 IEDFEEKLEEAIEELDEGDGVLILTDLGGGSPFNEAA-RLLLDKPN 84 (116)
T ss_dssp HHHHHHHHHHHHHHCCTTSEEEEEESSTTSHHHHHHH-HHHCTSTT
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeeCCCCccchHHH-HHhccCCC
Confidence 4566778888888888899999999999987644333 33334444
No 77
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=33.00 E-value=1.6e+02 Score=29.41 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=55.0
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCCC-CcchhhhhHHH
Q psy17915 274 EGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKV-SDTVVEPYNAI 352 (440)
Q Consensus 274 ~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~~-~~~~~~~yN~~ 352 (440)
...+.|..+.+.|++.+++ .+||.|+|+.+ |= -.++..+..+-+. +|-.+++=+-.|.... ++....-++++
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--Tm-eeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTD--TM-EETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--cH-HHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 5567778888888877763 88999999665 22 3466666655554 6666777777887543 34444344443
Q ss_pred HHHHHHHh--cCCeeEEechh
Q psy17915 353 LSLSHLIE--TSDETFCIDNE 371 (440)
Q Consensus 353 lsl~~l~e--~sd~~i~~~N~ 371 (440)
. .....+ .....+.|+++
T Consensus 133 ~-~A~~~~~~~~gV~V~f~~~ 152 (323)
T cd00411 133 Y-VAANYDSRGRGVLVVFNDR 152 (323)
T ss_pred H-HHcCcccCCCeEEEEECCE
Confidence 3 332222 34566777554
No 78
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=30.98 E-value=2.2e+02 Score=29.44 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=60.4
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCC-CCcchhhhhHHH
Q psy17915 274 EGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPK-VSDTVVEPYNAI 352 (440)
Q Consensus 274 ~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~-~~~~~~~~yN~~ 352 (440)
...+.|..+-+.|++.++ +..+||.|+|+.+ |= -.++..+..+-+..+|-.+++=+-.|... .++....-++++
T Consensus 120 mtp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--TM-~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALK--EGADGVVVAHGTD--TM-AYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--hH-HHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 567778888888888775 4578999999665 22 45666666655555666677777788653 345555555555
Q ss_pred HHHHHHHhcCCeeEEechh
Q psy17915 353 LSLSHLIETSDETFCIDNE 371 (440)
Q Consensus 353 lsl~~l~e~sd~~i~~~N~ 371 (440)
..... ..+...++|+.+
T Consensus 195 ~~A~~--~~~gV~V~f~g~ 211 (404)
T TIGR02153 195 RAATS--PIAEVTVVMHGE 211 (404)
T ss_pred HHHhC--CCCcEEEEECCc
Confidence 44332 456777888765
No 79
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=30.34 E-value=1.5e+02 Score=29.39 Aligned_cols=93 Identities=14% Similarity=0.132 Sum_probs=51.7
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCC-CCcchhhhhHHH
Q psy17915 274 EGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPK-VSDTVVEPYNAI 352 (440)
Q Consensus 274 ~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~-~~~~~~~~yN~~ 352 (440)
...+.|.++.+.|++.+++ .+||.|+|+.+ |= -.++.++..+-+..+|..+++=+..|... ..+....-++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--Tm-e~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--TM-EETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--TH-HHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--HH-HHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 5567777888888877754 89999999665 21 34556666655555566667777888653 345455555554
Q ss_pred HHHHHHHhcCCeeEEechhhhh
Q psy17915 353 LSLSHLIETSDETFCIDNEALY 374 (440)
Q Consensus 353 lsl~~l~e~sd~~i~~~N~~l~ 374 (440)
....+- +.....++|++. ++
T Consensus 128 ~~A~~~-~~~GV~v~f~~~-i~ 147 (313)
T PF00710_consen 128 RVAASP-AGPGVLVVFNGR-IY 147 (313)
T ss_dssp HHHHSG-GTSSEEEEETTE-EE
T ss_pred HHHhcc-cCCceEEEeCCC-cc
Confidence 444332 255566666554 44
No 80
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=29.94 E-value=52 Score=30.61 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=39.4
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCC
Q psy17915 267 WAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDR 328 (440)
Q Consensus 267 ~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~ 328 (440)
...|++..-..+++.+.+.++..++++...+=+..=||+||+ +++.++-.|+..++..
T Consensus 99 vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~~ 156 (229)
T cd00519 99 VHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPGS 156 (229)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCCC
Confidence 456777777777888888888888876655444445899764 5666677777665333
No 81
>KOG3178|consensus
Probab=29.49 E-value=51 Score=33.13 Aligned_cols=42 Identities=26% Similarity=0.467 Sum_probs=30.9
Q ss_pred HHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeee
Q psy17915 288 REAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFS 334 (440)
Q Consensus 288 ~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~ 334 (440)
|.++.+..+.++.+..++|||+|. ++.++--.||+...+.|-
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~-----v~k~ll~~fp~ik~infd 208 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGR-----VLKNLLSKYPHIKGINFD 208 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhH-----HHHHHHHhCCCCceeecC
Confidence 346777888999999999988873 555554489987665553
No 82
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=28.63 E-value=78 Score=26.37 Aligned_cols=48 Identities=6% Similarity=0.034 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhhhhhcccccccc
Q psy17915 112 VDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQNFRSANFKSKI 160 (440)
Q Consensus 112 ~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~~~~~~~~~~~i 160 (440)
.+++.+++++.+++.+.=+|+.++.++-|||-.=..+ .+..++++..+
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~-~~~~~~~~~~v 88 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAA-RIIVDKPHMDV 88 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHH-HHHhhcCCEEE
Confidence 4556677777777777678999999999998743333 33333444434
No 83
>PRK13660 hypothetical protein; Provisional
Probab=28.00 E-value=4.7e+02 Score=23.84 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCCCC
Q psy17915 280 DAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVS 342 (440)
Q Consensus 280 ~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~~~ 342 (440)
..+.+.|++.+|+ .+.=|.+ +..=|+- =.++.++-.|+.+||...+ ..++|+...+
T Consensus 29 ~aL~~~l~~~~e~--G~~wfi~--ggalG~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~ 84 (182)
T PRK13660 29 KAIKRKLIALLEE--GLEWVII--SGQLGVE-LWAAEVVLELKEEYPDLKL--AVITPFEEHG 84 (182)
T ss_pred HHHHHHHHHHHHC--CCCEEEE--CCcchHH-HHHHHHHHHHHhhCCCeEE--EEEeCccchh
Confidence 4455566666663 3432332 2221222 1267788889999996544 4567875443
No 84
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=27.93 E-value=1.7e+02 Score=22.37 Aligned_cols=52 Identities=12% Similarity=0.259 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhc--CCCcceeEEecCC----CCCCcChhHHHHHHHHHhCCCCceeeee
Q psy17915 280 DAVMDLTRREAENC--DCMQGFQVTHSLG----GGTGSGMGTLLLTKIREEYPDRMINAFS 334 (440)
Q Consensus 280 ~~~~d~iR~~~E~c--D~lqgf~i~~s~~----GGtGSG~~s~lle~l~dey~~~~i~~~~ 334 (440)
++..+.++..+++| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~ 66 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYR 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheee
Confidence 34455566666666 4567889999887 443 7777888887655555555553
No 85
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=27.87 E-value=77 Score=26.46 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhhccCCCCcceEEeeCCCCCc
Q psy17915 112 VDAVMDLTRREAENCDCMQGFQVTHSLGGGTG 143 (440)
Q Consensus 112 ~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtG 143 (440)
.+++.+++++.+++.+.-+|+.++.++-|||-
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 34556667777777777789999999998876
No 86
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=26.99 E-value=65 Score=27.42 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhcCC-CcceeEEecCCCCC
Q psy17915 279 VDAVMDLTRREAENCDC-MQGFQVTHSLGGGT 309 (440)
Q Consensus 279 ~~~~~d~iR~~~E~cD~-lqgf~i~~s~~GGt 309 (440)
.+...++|++.+|+++. =+|+.++.++ ||+
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs 71 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDL-GSA 71 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcC-CCc
Confidence 34466778888888865 7899999999 653
No 87
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=26.01 E-value=2.6e+02 Score=27.85 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=55.8
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCCC-CcchhhhhHHH
Q psy17915 274 EGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKV-SDTVVEPYNAI 352 (440)
Q Consensus 274 ~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~~-~~~~~~~yN~~ 352 (440)
...+.|..+.+.|++.+. -+..+||.|+|+.+ |= -.++.++..+-+..+|-.+++=+-.|.... ++....-++++
T Consensus 57 ~t~~~w~~la~~i~~~~~-~~~~dG~VVtHGTD--Tm-eeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av 132 (323)
T smart00870 57 MTPADWLKLAKRINEALA-DDGYDGVVVTHGTD--TL-EETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHhc-cCCCCEEEEecCCc--cH-HHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHH
Confidence 456667677777766543 25789999999665 21 356666766555556666777777887533 44444444444
Q ss_pred HHHHHHHh--cCCeeEEechhhhhh
Q psy17915 353 LSLSHLIE--TSDETFCIDNEALYD 375 (440)
Q Consensus 353 lsl~~l~e--~sd~~i~~~N~~l~~ 375 (440)
... ...+ .....++| |+.++.
T Consensus 133 ~~A-~~~~a~~~GV~V~f-~~~i~~ 155 (323)
T smart00870 133 RVA-ASPEARGRGVLVVF-NDEIHR 155 (323)
T ss_pred HHH-cCcccCCCEEEEEE-CCEeee
Confidence 432 2222 33455555 444543
No 88
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.87 E-value=2.7e+02 Score=23.60 Aligned_cols=39 Identities=26% Similarity=0.505 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCCCceeeeeecCCCCCC-cchhhhhHHHHH
Q psy17915 316 LLLTKIREEYPDRMINAFSVVPSPKVS-DTVVEPYNAILS 354 (440)
Q Consensus 316 ~lle~l~dey~~~~i~~~~v~P~~~~~-~~~~~~yN~~ls 354 (440)
.+++.++..+|+..++...+.|..... ....+.||.++.
T Consensus 68 ~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~n~~l~ 107 (157)
T cd01833 68 ALIDQMRAANPDVKIIVATLIPTTDASGNARIAEYNAAIP 107 (157)
T ss_pred HHHHHHHHhCCCeEEEEEeCCCCCCcchhHHHHHHHHHHH
Confidence 467778888898888877777753322 345667777654
No 89
>PLN02371 phosphoglucosamine mutase family protein
Probab=25.79 E-value=3.2e+02 Score=29.71 Aligned_cols=74 Identities=12% Similarity=0.227 Sum_probs=41.2
Q ss_pred CCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCC---CCcchhhhhHHHHHHHHHH-hcCCeeEEech
Q psy17915 295 CMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPK---VSDTVVEPYNAILSLSHLI-ETSDETFCIDN 370 (440)
Q Consensus 295 ~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~---~~~~~~~~yN~~lsl~~l~-e~sd~~i~~~N 370 (440)
.++++-|+.+.+.|+|+.+.+.+++.|--+ .+...-.-|... ......++.|--.....+. ..+|+.|.+|-
T Consensus 260 ~~~~lkIvvD~~nGag~~~~~~lL~~LG~~----v~~~~~~~pDg~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~Dg 335 (583)
T PLN02371 260 PLEGFKIVVDAGNGAGGFFAEKVLEPLGAD----TSGSLFLEPDGMFPNHIPNPEDKAAMSATTQAVLANKADLGIIFDT 335 (583)
T ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCC----eEeeccCCCCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCEEEEECC
Confidence 357999999999999888888888776211 111111222211 1122222333333333333 34899999975
Q ss_pred hh
Q psy17915 371 EA 372 (440)
Q Consensus 371 ~~ 372 (440)
|+
T Consensus 336 Da 337 (583)
T PLN02371 336 DV 337 (583)
T ss_pred Cc
Confidence 54
No 90
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=23.72 E-value=3.2e+02 Score=28.43 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=60.4
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCC-CCcchhhhhHHH
Q psy17915 274 EGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPK-VSDTVVEPYNAI 352 (440)
Q Consensus 274 ~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~-~~~~~~~~yN~~ 352 (440)
...+.|..+-+.|++.++ +..+||.|+|+.+ |= -.++..+..+- ..+|-.+++=+-.|... .++....-++++
T Consensus 133 mtp~~W~~La~~I~~~~~--~~~dGvVVtHGTD--TM-~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 206 (419)
T PRK04183 133 MTPEYWVEIAEAVYEEIK--NGADGVVVAHGTD--TM-HYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAV 206 (419)
T ss_pred CCHHHHHHHHHHHHHHhh--ccCCeEEEecCCc--hH-HHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 567788888889988886 3589999999765 32 45666666554 55666677777788643 345555555555
Q ss_pred HHHHHHHhcCCeeEEechh
Q psy17915 353 LSLSHLIETSDETFCIDNE 371 (440)
Q Consensus 353 lsl~~l~e~sd~~i~~~N~ 371 (440)
.... ...+...+.|+.+
T Consensus 207 ~~A~--~~~~gV~Vvf~g~ 223 (419)
T PRK04183 207 LAAT--SDIAEVVVVMHGT 223 (419)
T ss_pred HHHh--CCCCcEEEEECCc
Confidence 4433 3456777888765
No 91
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=23.62 E-value=42 Score=28.98 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=35.9
Q ss_pred ccCccchhhhHHHHHHHHHhhhhccCCCCcceEEeeCCCCCccchhhhhhhc
Q psy17915 102 KGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQNFRS 153 (440)
Q Consensus 102 ~G~~~~g~~~~~~i~~~iR~~~E~cD~lqgf~i~~Sl~GGtGSG~~~~~~~~ 153 (440)
+|++.....+.+.+...+++...++..-+=+.+=||+||+.. ++.+.+++.
T Consensus 1 ~Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA-~l~a~~~~~ 51 (153)
T cd00741 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALA-GLAGLDLRG 51 (153)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHH-HHHHHHHHh
Confidence 366666777777888888777776677777788999997754 455544433
No 92
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=23.56 E-value=4.7e+02 Score=27.31 Aligned_cols=94 Identities=11% Similarity=0.048 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCC---CCcchhhhhHHHHH
Q psy17915 278 LVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPK---VSDTVVEPYNAILS 354 (440)
Q Consensus 278 ~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~---~~~~~~~~yN~~ls 354 (440)
+.+...+.|.+.+. .+.++++-|+.+...|+|+.+.+.+++.|+.-=-...++..-..|... ....+.++.|-...
T Consensus 151 ~~~~Yi~~l~~~id-~~~~~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~~~~~~pdg~F~~~~p~P~~~~~l~~l 229 (456)
T PRK15414 151 LRDAYVDHLFGYIN-VKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDT 229 (456)
T ss_pred cHHHHHHHHHHhcc-cccCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCCCCCCHHHHHHH
Confidence 34445555554442 234579999999999999888888855554321111222222223211 11112223333222
Q ss_pred HHHH-HhcCCeeEEechhh
Q psy17915 355 LSHL-IETSDETFCIDNEA 372 (440)
Q Consensus 355 l~~l-~e~sd~~i~~~N~~ 372 (440)
...+ ...+|+.+.+|-|+
T Consensus 230 ~~~v~~~~adlGia~DgDa 248 (456)
T PRK15414 230 RNAVIKHGADMGIAFDGDF 248 (456)
T ss_pred HHHHHHcCCCEEEEECCCc
Confidence 3323 23489999997654
No 93
>PF03283 PAE: Pectinacetylesterase
Probab=23.23 E-value=3.7e+02 Score=27.28 Aligned_cols=51 Identities=24% Similarity=0.384 Sum_probs=34.6
Q ss_pred CcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHH-HHHHHHhCCC
Q psy17915 271 HYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLL-LTKIREEYPD 327 (440)
Q Consensus 271 ~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~l-le~l~dey~~ 327 (440)
.|..|..+++.+++.|... .-+..+-+.+..+-+||. |+.+ .+.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~--gl~~a~~vlltG~SAGG~----g~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSN--GLPNAKQVLLTGCSAGGL----GAILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHh--cCcccceEEEeccChHHH----HHHHHHHHHHHHhcc
Confidence 4667888998888887665 133344456666666554 4444 8899999995
No 94
>PTZ00489 glutamate 5-kinase; Provisional
Probab=22.60 E-value=5.8e+02 Score=24.61 Aligned_cols=46 Identities=17% Similarity=0.067 Sum_probs=27.4
Q ss_pred HHHhCCCCceeeeeecCCCCCCcchhhhhHHHHHHHHHHhcCCeeEEe
Q psy17915 321 IREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCI 368 (440)
Q Consensus 321 l~dey~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~ 368 (440)
..+.+.+..+.+..+++.........+..|+.-++..|.+.- ++|+
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~g--~VPI 132 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISHK--VIPI 132 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHCC--CEEE
Confidence 445555555556666665433334445558888888888873 4555
No 95
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=21.89 E-value=1.3e+02 Score=29.22 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=31.4
Q ss_pred cccCCCCcccchhhHHHHHH-HHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeee
Q psy17915 265 NNWAKGHYTEGVELVDAVMD-LTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSV 335 (440)
Q Consensus 265 nn~~~G~~~~g~~~~~~~~d-~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v 335 (440)
-.|+.|+|..+.+-+++... .+...+|+++--.| +=+.++|.||| | ++..+...| +..+..+.+
T Consensus 29 m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~----~~~~~a~~~-g~~v~gitl 93 (273)
T PF02353_consen 29 MKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-G----LAIYAAERY-GCHVTGITL 93 (273)
T ss_dssp ---S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-H----HHHHHHHHH---EEEEEES
T ss_pred CCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-H----HHHHHHHHc-CcEEEEEEC
Confidence 45677888877775655544 57777888765445 45678888888 4 445555556 444544444
No 96
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=21.64 E-value=2.7e+02 Score=27.94 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=48.7
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCC-CCcchhhhhHHH
Q psy17915 274 EGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPK-VSDTVVEPYNAI 352 (440)
Q Consensus 274 ~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~-~~~~~~~~yN~~ 352 (440)
...+.|..+.+.|++..+ ..+||.|+|+.+ |= -.++..+..+-+. +|-.+++=+-.|... .++....-++++
T Consensus 59 ~tp~~w~~la~~I~~~~~---~~dG~VVtHGTD--Tm-e~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYD---DYDGFVITHGTD--TM-AYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHh---cCCeEEEccCCc--hH-HHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 557778888888887775 388999999765 22 4566667665444 666677777788743 344455455554
Q ss_pred HH
Q psy17915 353 LS 354 (440)
Q Consensus 353 ls 354 (440)
..
T Consensus 132 ~~ 133 (336)
T TIGR00519 132 RA 133 (336)
T ss_pred HH
Confidence 43
No 97
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=21.27 E-value=53 Score=32.45 Aligned_cols=100 Identities=20% Similarity=0.212 Sum_probs=53.6
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHhhcCCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCC--C
Q psy17915 263 AANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSP--K 340 (440)
Q Consensus 263 ~~nn~~~G~~~~g~~~~~~~~d~iR~~~E~cD~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~--~ 340 (440)
...||.-=|++.|.|++++.... ++.| +.++ ||| |--+-+...||+.+|+..+ ++|-|.. .
T Consensus 147 NpaN~~aH~~tT~~EI~~~~~g~----------~d~f--Vagv--GTG-GTitGvar~Lk~~~p~i~i--v~vdP~~S~~ 209 (300)
T COG0031 147 NPANPEAHYETTGPEIWQQTDGK----------VDAF--VAGV--GTG-GTITGVARYLKERNPNVRI--VAVDPEGSVL 209 (300)
T ss_pred CCccHHHHHhhhHHHHHHHhCCC----------CCEE--EEeC--Ccc-hhHHHHHHHHHhhCCCcEE--EEECCCCCcc
Confidence 44556555567788877654332 3333 3444 455 6667789999999998544 4555542 0
Q ss_pred C--C--cchhhh-hHHHHHHHHHHhcCCeeEEechhhhhhhhhc
Q psy17915 341 V--S--DTVVEP-YNAILSLSHLIETSDETFCIDNEALYDICVR 379 (440)
Q Consensus 341 ~--~--~~~~~~-yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~ 379 (440)
. + ...+|- =+......-..+..|-++.++++.....+++
T Consensus 210 ~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~ 253 (300)
T COG0031 210 LSGGEGPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARR 253 (300)
T ss_pred cCCCCCCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHH
Confidence 1 1 111110 0111112222345788888877777666643
No 98
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.68 E-value=4.1e+02 Score=24.00 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=39.0
Q ss_pred CCCcccchhhHHHHHHHHHHHHhhc--CCCcceeEEecCCCCCCcChhHHHHHHHHHhCCCCceeeeeecCCCC
Q psy17915 269 KGHYTEGVELVDAVMDLTRREAENC--DCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPK 340 (440)
Q Consensus 269 ~G~~~~g~~~~~~~~d~iR~~~E~c--D~lqgf~i~~s~~GGtGSG~~s~lle~l~dey~~~~i~~~~v~P~~~ 340 (440)
.|-+.....-.-.+.+.||+-+|+. +.+.=+.++..+ |+- =.++.++-.|+.+||...+ ..+.|+..
T Consensus 14 lgiF~~k~p~~~~IKkai~~~l~~lleeGleW~litGqL--G~E-~WA~Evv~eLk~eyp~ik~--avitpFe~ 82 (180)
T COG4474 14 LGIFKDKDPEVSYIKKAIKKKLEALLEEGLEWVLITGQL--GFE-LWAAEVVIELKEEYPHIKL--AVITPFEE 82 (180)
T ss_pred eccccCCCchHHHHHHHHHHHHHHHHhcCceEEEEeccc--cHH-HHHHHHHHHHHhhCCCeeE--EEEechhh
Confidence 3334333333445666666666554 667777776544 221 1267788999999996543 33566543
No 99
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=20.68 E-value=1.9e+02 Score=23.13 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=18.5
Q ss_pred cceeEEecCCCCCCcChhHHHHHHHH
Q psy17915 297 QGFQVTHSLGGGTGSGMGTLLLTKIR 322 (440)
Q Consensus 297 qgf~i~~s~~GGtGSG~~s~lle~l~ 322 (440)
.+|.|+.+...|+|+...+.+++.|.
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg 45 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLG 45 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 46799999998888766666666653
No 100
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=20.56 E-value=1e+02 Score=25.74 Aligned_cols=54 Identities=24% Similarity=0.405 Sum_probs=35.8
Q ss_pred CCCcccch-hhHHHHHHHHHHHHhhcCCCcceeEE-ecCCCCCCcChhHHHHHHHHHhCCC
Q psy17915 269 KGHYTEGV-ELVDAVMDLTRREAENCDCMQGFQVT-HSLGGGTGSGMGTLLLTKIREEYPD 327 (440)
Q Consensus 269 ~G~~~~g~-~~~~~~~d~iR~~~E~cD~lqgf~i~-~s~~GGtGSG~~s~lle~l~dey~~ 327 (440)
.|++..-. ...+.+.+.|++.+++... .-+.++ ||+|| +++..+.-.+....+.
T Consensus 36 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~-~~i~itGHSLGG----alA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 36 SGFLDAAEDSLYDQILDALKELVEKYPD-YSIVITGHSLGG----ALASLAAADLASHGPS 91 (140)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHSTT-SEEEEEEETHHH----HHHHHHHHHHHHCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccC-ccchhhccchHH----HHHHHHHHhhhhcccc
Confidence 44444444 6667788888887777654 344555 79875 4677777778777654
No 101
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=20.39 E-value=1.2e+02 Score=28.63 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=21.9
Q ss_pred EEecCCCCCCcChhHHHHHHHHHhCCCC
Q psy17915 301 VTHSLGGGTGSGMGTLLLTKIREEYPDR 328 (440)
Q Consensus 301 i~~s~~GGtGSG~~s~lle~l~dey~~~ 328 (440)
++-+++||.|||= +-++..|.+.+++.
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 4568999999987 67888888888755
Done!