RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17915
(440 letters)
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 425
Score = 574 bits (1481), Expect = 0.0
Identities = 215/273 (78%), Positives = 242/273 (88%), Gaps = 1/273 (0%)
Query: 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIP 227
REIVHIQ GQCGNQ G KFWE IS EHGL+ G Y+G SDLQLERI VY+NEA GG Y+P
Sbjct: 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVP 60
Query: 228 RAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTR 287
RAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG EL+D+V+D+ R
Sbjct: 61 RAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 120
Query: 288 REAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVE 347
+EAE+CDC+QGFQ+THSLGGGTGSGMGTLL++KIREEYPDR++ FSV PSPKVSDTVVE
Sbjct: 121 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVVE 180
Query: 348 PYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLR 407
PYNA LS+ L+E SDETFCIDNEALYDIC R+LKL +P+Y DLNHLVSA M GITTCLR
Sbjct: 181 PYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240
Query: 408 FPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
FPGQLN+DLRKLAVNMVPFPRLHFFM G APL
Sbjct: 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLT 273
Score = 296 bits (759), Expect = 1e-96
Identities = 111/144 (77%), Positives = 128/144 (88%), Gaps = 1/144 (0%)
Query: 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIP 60
REIVHIQ GQCGNQ G KFWE IS EHGL+ G Y+G SDLQLERI VY+NEA GG Y+P
Sbjct: 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVP 60
Query: 61 RAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTR 120
RAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG EL+D+V+D+ R
Sbjct: 61 RAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVR 120
Query: 121 REAENCDCMQGFQVTHSLGGGTGS 144
+EAE+CDC+QGFQ+THSLGGGTGS
Sbjct: 121 KEAESCDCLQGFQLTHSLGGGTGS 144
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 535 bits (1380), Expect = 0.0
Identities = 207/273 (75%), Positives = 241/273 (88%), Gaps = 1/273 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y+G SDLQLERI VYYNEA GG Y+
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PRA+L+DLEPGTMD+VR+GPYG++FRPDNF+ GQSGA NNWAKGHYTEG EL+D+V+D+
Sbjct: 61 PRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 287 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVV 346
R+EAE+CDC+QGFQ+THSLGGGTGSGMGTLL++K+REEYPDR++ FSV PSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYNA LS+ L+E +DE+ CIDNEALYDIC R+LKL +P+Y DLNHLVSA M G+T CL
Sbjct: 181 EPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPL 439
RFPGQLN+DLRKLAVN+VPFPRLHFFM G APL
Sbjct: 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPL 273
Score = 286 bits (734), Expect = 1e-92
Identities = 110/145 (75%), Positives = 129/145 (88%), Gaps = 1/145 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y+G SDLQLERI VYYNEA GG Y+
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRA+L+DLEPGTMD+VR+GPYG++FRPDNF+ GQSGA NNWAKGHYTEG EL+D+V+D+
Sbjct: 61 PRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTHSLGGGTGS 144
R+EAE+CDC+QGFQ+THSLGGGTGS
Sbjct: 121 RKEAESCDCLQGFQITHSLGGGTGS 145
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 527 bits (1359), Expect = 0.0
Identities = 205/273 (75%), Positives = 237/273 (86%), Gaps = 1/273 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
MREI+HIQ GQCGNQ G KFWE + EHG++ G Y G SDLQLERI VYYNEA GG Y+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PRA+L+DLEPGTMD+VRSGPYG++FRPDNF+ GQSGA NNWAKGHYTEG EL+D+V+D+
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 287 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVV 346
R+EAENCDC+QGFQV HSLGGGTGSGMGTLL++KIREEYPDRM+ FSV PSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYNA LS+ L+E +DE +DNEALYDIC R+LKL +PS+ DLNHL+SATM G+T CL
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPL 439
RFPGQLN+DLRKLAVN++PFPRLHFFM G APL
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL 273
Score = 285 bits (731), Expect = 3e-92
Identities = 109/145 (75%), Positives = 126/145 (86%), Gaps = 1/145 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREI+HIQ GQCGNQ G KFWE + EHG++ G Y G SDLQLERI VYYNEA GG Y+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRA+L+DLEPGTMD+VRSGPYG++FRPDNF+ GQSGA NNWAKGHYTEG EL+D+V+D+
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTHSLGGGTGS 144
R+EAENCDC+QGFQV HSLGGGTGS
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGS 145
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 457 bits (1177), Expect = e-159
Identities = 158/274 (57%), Positives = 202/274 (73%), Gaps = 1/274 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYI 226
MREI+ +QVGQCGNQ G FWE + EHG+ G +SD ER V++ EA G ++
Sbjct: 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PRAILVDLEPG +D VR+GPYG +F P+N + G+ GA NNWA+GHYT G E++D VMD+
Sbjct: 61 PRAILVDLEPGVIDQVRNGPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMI 120
Query: 287 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVV 346
RREA+ CD +QGF + HSLGGGTGSG+G+LLL ++REEYP ++ FSV P+PKVSD VV
Sbjct: 121 RREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYN++L+L L+E SD TF +DNEALYDIC R+L++ +PSY DLN L+S M +TT L
Sbjct: 181 EPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
RFPG LN DLR + N+VP+PRLHF + P
Sbjct: 241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFT 274
Score = 243 bits (621), Expect = 9e-76
Identities = 84/145 (57%), Positives = 106/145 (73%), Gaps = 1/145 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYI 59
MREI+ +QVGQCGNQ G FWE + EHG+ G +SD ER V++ EA G ++
Sbjct: 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRAILVDLEPG +D VR+GPYG +F P+N + G+ GA NNWA+GHYT G E++D VMD+
Sbjct: 61 PRAILVDLEPGVIDQVRNGPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMI 120
Query: 120 RREAENCDCMQGFQVTHSLGGGTGS 144
RREA+ CD +QGF + HSLGGGTGS
Sbjct: 121 RREADGCDGLQGFLLLHSLGGGTGS 145
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 326 bits (839), Expect = e-109
Identities = 129/270 (47%), Positives = 170/270 (62%), Gaps = 38/270 (14%)
Query: 170 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRA 229
EI+ IQ+GQCGNQ G KFWE
Sbjct: 1 EIISIQIGQCGNQIGNKFWEL--------------------------------------L 22
Query: 230 ILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRRE 289
ILVDL+P ++ + G K+F P+ ++G+ G+ NNWA+G+YT G EL+D ++D R++
Sbjct: 23 ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQ 82
Query: 290 AENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPY 349
E CD +QGFQ+THSLGGGTGSG+G+LLL + +EYP +IN FS+ PSP+ S VVEPY
Sbjct: 83 VEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPY 142
Query: 350 NAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFP 409
N+ILSL+HL+E SD DNEALY+I R L ++ PS+ DLN++++ + IT LRFP
Sbjct: 143 NSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRFP 202
Query: 410 GQLNADLRKLAVNMVPFPRLHFFMSGNAPL 439
G LN DLRKLA N+VPFPRLHF APL
Sbjct: 203 GYLNFDLRKLATNLVPFPRLHFLTPSFAPL 232
Score = 141 bits (358), Expect = 6e-38
Identities = 57/142 (40%), Positives = 78/142 (54%), Gaps = 38/142 (26%)
Query: 3 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRA 62
EI+ IQ+GQCGNQ G KFWE
Sbjct: 1 EIISIQIGQCGNQIGNKFWEL--------------------------------------L 22
Query: 63 ILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRRE 122
ILVDL+P ++ + G K+F P+ ++G+ G+ NNWA+G+YT G EL+D ++D R++
Sbjct: 23 ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQ 82
Query: 123 AENCDCMQGFQVTHSLGGGTGS 144
E CD +QGFQ+THSLGGGTGS
Sbjct: 83 VEKCDSLQGFQITHSLGGGTGS 104
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 307 bits (788), Expect = e-101
Identities = 120/275 (43%), Positives = 178/275 (64%), Gaps = 3/275 (1%)
Query: 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRY--EGTSDLQLERIQVYYNEAQGG-Y 225
RE++ I +GQ G Q G WE EHG+ G+ + T + +++E G +
Sbjct: 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKH 60
Query: 226 IPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDL 285
+PRA+ +DLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V+D
Sbjct: 61 VPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDR 120
Query: 286 TRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTV 345
R+ A+NC +QGF + HS GGGTGSG G+LLL ++ +Y + F+V PSP+VS V
Sbjct: 121 IRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAV 180
Query: 346 VEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTC 405
VEPYN++L+ L+E SD +F +DNEA+YDIC R+L + P+Y +LN L++ + IT
Sbjct: 181 VEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240
Query: 406 LRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
LRF G LN DL + N+VP+PR+HF + AP++
Sbjct: 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPII 275
Score = 150 bits (382), Expect = 4e-41
Identities = 61/146 (41%), Positives = 91/146 (62%), Gaps = 3/146 (2%)
Query: 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRY--EGTSDLQLERIQVYYNEAQGG-Y 58
RE++ I +GQ G Q G WE EHG+ G+ + T + +++E G +
Sbjct: 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKH 60
Query: 59 IPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDL 118
+PRA+ +DLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V+D
Sbjct: 61 VPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDR 120
Query: 119 TRREAENCDCMQGFQVTHSLGGGTGS 144
R+ A+NC +QGF + HS GGGTGS
Sbjct: 121 IRKLADNCTGLQGFLIFHSFGGGTGS 146
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 301 bits (772), Expect = e-100
Identities = 120/270 (44%), Positives = 159/270 (58%), Gaps = 39/270 (14%)
Query: 170 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRA 229
EIV IQ+GQ GNQ G KFWE++
Sbjct: 1 EIVTIQLGQAGNQIGAKFWEQL-------------------------------------- 22
Query: 230 ILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRRE 289
+LVD EPG +D SGPY +F + GA NNWA GH T G E + ++D+ R+E
Sbjct: 23 VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKE 82
Query: 290 AENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPY 349
AE CD +QGF +THSLGGGTGSG+G +L ++++EYP R+ FS++P P +V PY
Sbjct: 83 AEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEG-VIVRPY 141
Query: 350 NAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFP 409
N+IL+L L E SD IDNEAL+DIC R L ++ P++ +N L++ + +TT LRF
Sbjct: 142 NSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFD 201
Query: 410 GQLNADLRKLAVNMVPFPRLHFFMSGNAPL 439
G LN DLR+L+ N+VPFPRLHF M G APL
Sbjct: 202 GSLNVDLRELSENLVPFPRLHFLMVGYAPL 231
Score = 138 bits (350), Expect = 2e-37
Identities = 58/142 (40%), Positives = 72/142 (50%), Gaps = 38/142 (26%)
Query: 3 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRA 62
EIV IQ+GQ GNQ G KFWE++
Sbjct: 1 EIVTIQLGQAGNQIGAKFWEQL-------------------------------------- 22
Query: 63 ILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRRE 122
+LVD EPG +D SGPY +F + GA NNWA GH T G E + ++D+ R+E
Sbjct: 23 VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKE 82
Query: 123 AENCDCMQGFQVTHSLGGGTGS 144
AE CD +QGF +THSLGGGTGS
Sbjct: 83 AEECDSLQGFFITHSLGGGTGS 104
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 300 bits (770), Expect = 4e-98
Identities = 116/277 (41%), Positives = 176/277 (63%), Gaps = 7/277 (2%)
Query: 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIP 227
REI+ +QVGQCGNQ G +FW+++ EHG++ G E + +R V++ +A Y+P
Sbjct: 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVP 60
Query: 228 RAILVDLEPGTMDAVRSGPYGKMFRPDNFL---HGQSGAANNWAKGHYTEGVELVDAVMD 284
RAIL+DLEP ++++++ Y ++ P+N HG GA NNWA G Y++G E+ + ++D
Sbjct: 61 RAILIDLEPRVINSIQNSEYRNLYNPENIFLSKHG-GGAGNNWASG-YSQGEEVQEEILD 118
Query: 285 LTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVP-SPKVSD 343
+ REA+ D ++GF + HS+ GGTGSGMG+ LL ++ + YP ++I +SV P + SD
Sbjct: 119 IIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESSD 178
Query: 344 TVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGIT 403
VV+PYN+IL+L LI +D +DN AL I L + +P++ +N LVS M T
Sbjct: 179 VVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSAST 238
Query: 404 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
T LR+PG +N DL L +++P PRLHF M+ PL
Sbjct: 239 TTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLT 275
Score = 161 bits (410), Expect = 6e-45
Identities = 61/147 (41%), Positives = 97/147 (65%), Gaps = 6/147 (4%)
Query: 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIP 60
REI+ +QVGQCGNQ G +FW+++ EHG++ G E + +R V++ +A Y+P
Sbjct: 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVP 60
Query: 61 RAILVDLEPGTMDAVRSGPYGKMFRPDNFL---HGQSGAANNWAKGHYTEGVELVDAVMD 117
RAIL+DLEP ++++++ Y ++ P+N HG GA NNWA G Y++G E+ + ++D
Sbjct: 61 RAILIDLEPRVINSIQNSEYRNLYNPENIFLSKHG-GGAGNNWASG-YSQGEEVQEEILD 118
Query: 118 LTRREAENCDCMQGFQVTHSLGGGTGS 144
+ REA+ D ++GF + HS+ GGTGS
Sbjct: 119 IIDREADGSDSLEGFVLCHSIAGGTGS 145
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 291 bits (747), Expect = 2e-94
Identities = 117/276 (42%), Positives = 178/276 (64%), Gaps = 3/276 (1%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYE--GTSDLQLERIQVYYNE-AQGG 224
MRE++ I +GQ G Q G WE EHG+ G+ ++ + +++E G
Sbjct: 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGK 60
Query: 225 YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMD 284
++PR + +DLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E+VD +D
Sbjct: 61 HVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 285 LTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDT 344
R+ A+NC +QGF V H++GGGTGSG+G+LLL ++ +Y + F++ PSP+VS
Sbjct: 121 RIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
Query: 345 VVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 404
VVEPYN++LS L+E +D +DNEA+YDIC R+L + P+Y +LN L++ + +T
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240
Query: 405 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
LRF G LN DL + N+VP+PR+HF +S AP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPII 276
Score = 148 bits (375), Expect = 6e-40
Identities = 60/147 (40%), Positives = 91/147 (61%), Gaps = 3/147 (2%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYE--GTSDLQLERIQVYYNE-AQGG 57
MRE++ I +GQ G Q G WE EHG+ G+ ++ + +++E G
Sbjct: 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGK 60
Query: 58 YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMD 117
++PR + +DLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E+VD +D
Sbjct: 61 HVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 118 LTRREAENCDCMQGFQVTHSLGGGTGS 144
R+ A+NC +QGF V H++GGGTGS
Sbjct: 121 RIRKLADNCTGLQGFLVFHAVGGGTGS 147
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 285 bits (730), Expect = 6e-92
Identities = 121/276 (43%), Positives = 178/276 (64%), Gaps = 3/276 (1%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGR--YEGTSDLQLERIQVYYNEAQGG- 224
MRE + I +GQ G Q G WE EHG+ G+ + T + +++E G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 225 YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMD 284
++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E+VD +D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 285 LTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDT 344
R+ A+NC +QGF V +++GGGTGSG+G+LLL ++ +Y + F+V PSP+VS
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTA 180
Query: 345 VVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 404
VVEPYN++LS L+E +D +DNEA+YDIC RSL + P+Y +LN L+S + +T
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240
Query: 405 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
LRF G LN D+ + N+VP+PR+HF +S AP++
Sbjct: 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVI 276
Score = 142 bits (359), Expect = 1e-37
Identities = 62/147 (42%), Positives = 91/147 (61%), Gaps = 3/147 (2%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGR--YEGTSDLQLERIQVYYNEAQGG- 57
MRE + I +GQ G Q G WE EHG+ G+ + T + +++E G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 58 YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMD 117
++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E+VD +D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 118 LTRREAENCDCMQGFQVTHSLGGGTGS 144
R+ A+NC +QGF V +++GGGTGS
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGS 147
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 259 bits (664), Expect = 4e-82
Identities = 113/276 (40%), Positives = 173/276 (62%), Gaps = 7/276 (2%)
Query: 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQG-GYIP 227
REI+ +QVGQCGNQ G++FW+++ EHG+++ G E + +R V++ +A YIP
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIP 62
Query: 228 RAILVDLEPGTMDAVRSGPYGKMFRPDNFL---HGQSGAANNWAKGHYTEGVELVDAVMD 284
RA+L+DLEP ++ +++ Y ++ +N HG GA NNWA G Y +G ++ + +MD
Sbjct: 63 RALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHG-GGAGNNWASG-YHQGEQVEEDIMD 120
Query: 285 LTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPS-PKVSD 343
+ REA+ D ++GF + HS+ GGTGSGMG+ LL + + Y +++ +SV P+ + SD
Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSD 180
Query: 344 TVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGIT 403
VV+PYN++L+L L +D +DN AL I V L L +P++ N LVS M T
Sbjct: 181 VVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAST 240
Query: 404 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPL 439
T LR+PG +N DL L +++P PR HF M+G PL
Sbjct: 241 TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPL 276
Score = 146 bits (369), Expect = 4e-39
Identities = 60/147 (40%), Positives = 96/147 (65%), Gaps = 6/147 (4%)
Query: 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQG-GYIP 60
REI+ +QVGQCGNQ G++FW+++ EHG+++ G E + +R V++ +A YIP
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIP 62
Query: 61 RAILVDLEPGTMDAVRSGPYGKMFRPDNFL---HGQSGAANNWAKGHYTEGVELVDAVMD 117
RA+L+DLEP ++ +++ Y ++ +N HG GA NNWA G Y +G ++ + +MD
Sbjct: 63 RALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHG-GGAGNNWASG-YHQGEQVEEDIMD 120
Query: 118 LTRREAENCDCMQGFQVTHSLGGGTGS 144
+ REA+ D ++GF + HS+ GGTGS
Sbjct: 121 MIDREADGSDSLEGFVLCHSIAGGTGS 147
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 231 bits (590), Expect = 3e-74
Identities = 82/221 (37%), Positives = 121/221 (54%), Gaps = 12/221 (5%)
Query: 171 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRA 229
I+ I VG GN G WE + +EHG++ G ++I V++ E+ G Y PR
Sbjct: 1 IIVIGVGGAGNNIGNALWELLCKEHGIDPDG-----MLFHADKINVFFEESGDGVYGPRF 55
Query: 230 ILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRRE 289
I +D +P ++ +++G K+F +N G GA NN A G+YT E + ++ R+E
Sbjct: 56 IAIDTDPQVLNEIKAGN--KLFIGNNLTKGLEGAGNNPAVGYYT-HKEAAEESLEEIRKE 112
Query: 290 AENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPY 349
E CD + GF +T LGGGTGSG ++ ++E Y + A P S+ VV PY
Sbjct: 113 LEKCDGLDGFFITAGLGGGTGSGAAPVIAEILKELY-GALTVAVVTFPF--TSEGVVRPY 169
Query: 350 NAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRD 390
NAIL L LIE SD IDN+AL +IC L + SP++++
Sbjct: 170 NAILGLKELIEHSDSVIVIDNDALLEICDNQLDIKSPAFKN 210
Score = 151 bits (383), Expect = 2e-43
Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 9/142 (6%)
Query: 4 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIPRA 62
I+ I VG GN G WE + +EHG++ G ++I V++ E+ G Y PR
Sbjct: 1 IIVIGVGGAGNNIGNALWELLCKEHGIDPDG-----MLFHADKINVFFEESGDGVYGPRF 55
Query: 63 ILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRRE 122
I +D +P ++ +++G K+F +N G GA NN A G+YT E + ++ R+E
Sbjct: 56 IAIDTDPQVLNEIKAGN--KLFIGNNLTKGLEGAGNNPAVGYYT-HKEAAEESLEEIRKE 112
Query: 123 AENCDCMQGFQVTHSLGGGTGS 144
E CD + GF +T LGGGTGS
Sbjct: 113 LEKCDGLDGFFITAGLGGGTGS 134
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 233 bits (595), Expect = 1e-71
Identities = 108/303 (35%), Positives = 160/303 (52%), Gaps = 32/303 (10%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEH-GLNEMGRYEGTSDLQLERIQVYYNEAQGGYI 226
REIV +QVGQCGNQ G +FW+ +EH +N +Y+ D E + N +
Sbjct: 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQYDDARDSFFENVSENVNRPGKENL 60
Query: 227 -PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDL 285
RA+LVD+E G ++ + P G +F + F+ SGA NNWA GH G + +D++ +
Sbjct: 61 KARAVLVDMEEGVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISES 120
Query: 286 TRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSP-KVSDT 344
RR+ E CD +Q F + HSLGGGTGSG+GT +L + +E+P + F V P V D
Sbjct: 121 VRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPH--VFRFCPVVFPSAVDDV 178
Query: 345 VVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPS----------------- 387
+ PYN+ +L LIE +D +DN+AL +I +L
Sbjct: 179 ITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQPHKYSV 238
Query: 388 ----------YRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNA 437
Y +N++V+ + +T+ +RF G LN D+ ++ N+VP+PRLHF S A
Sbjct: 239 AKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIA 298
Query: 438 PLV 440
PLV
Sbjct: 299 PLV 301
Score = 135 bits (341), Expect = 4e-35
Identities = 60/146 (41%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEH-GLNEMGRYEGTSDLQLERIQVYYNEAQGGYI 59
REIV +QVGQCGNQ G +FW+ +EH +N +Y+ D E + N +
Sbjct: 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQYDDARDSFFENVSENVNRPGKENL 60
Query: 60 -PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDL 118
RA+LVD+E G ++ + P G +F + F+ SGA NNWA GH G + +D++ +
Sbjct: 61 KARAVLVDMEEGVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISES 120
Query: 119 TRREAENCDCMQGFQVTHSLGGGTGS 144
RR+ E CD +Q F + HSLGGGTGS
Sbjct: 121 VRRQVEQCDSLQSFFLMHSLGGGTGS 146
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 229 bits (587), Expect = 1e-71
Identities = 98/271 (36%), Positives = 150/271 (55%), Gaps = 42/271 (15%)
Query: 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPR 228
REI+ +QVGQCGNQ G +FW+ +EH L+ R
Sbjct: 1 REIIVVQVGQCGNQIGCRFWDLALREH-------------LK----------------AR 31
Query: 229 AILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRR 288
A+L+D+E G ++ + GP +F + SGA NNWA G++ G + +D++++ R+
Sbjct: 32 AVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRK 91
Query: 289 EAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEP 348
AE CD +Q F + HSLGGGTGSG+GT +L + +E+P+ SV PS D + P
Sbjct: 92 AAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPS-ADDDVITSP 150
Query: 349 YNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRF 408
YN++L+L LIE +D I+N+AL + +N +V+ + +T+ +RF
Sbjct: 151 YNSVLALRELIEHADCVLPIENQALVP------------FDAMNSIVANLLLNLTSSMRF 198
Query: 409 PGQLNADLRKLAVNMVPFPRLHFFMSGNAPL 439
G LN DL ++ +N+VPFPRLHF +S +PL
Sbjct: 199 EGSLNVDLNEITMNLVPFPRLHFLVSSLSPL 229
Score = 128 bits (324), Expect = 3e-33
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 29/143 (20%)
Query: 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPR 61
REI+ +QVGQCGNQ G +FW+ +EH L+ R
Sbjct: 1 REIIVVQVGQCGNQIGCRFWDLALREH-------------LK----------------AR 31
Query: 62 AILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRR 121
A+L+D+E G ++ + GP +F + SGA NNWA G++ G + +D++++ R+
Sbjct: 32 AVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRK 91
Query: 122 EAENCDCMQGFQVTHSLGGGTGS 144
AE CD +Q F + HSLGGGTGS
Sbjct: 92 AAEKCDSLQSFFILHSLGGGTGS 114
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 218 bits (558), Expect = 1e-69
Identities = 74/194 (38%), Positives = 102/194 (52%), Gaps = 13/194 (6%)
Query: 222 QGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYT-----EGV 276
GG P A+ VDLEPG +D VR+ + P++ G+ A NNW +G G
Sbjct: 7 VGGGGPNAVNVDLEPGVIDGVRANTDAQALNPESLASGKIQAGNNWTRGLGAGADPEVGR 66
Query: 277 ELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVV 336
E + +D R E E D G +T +GGGTG+G ++ +I +EY + +VV
Sbjct: 67 EAAEESLDEIREELEGAD---GVFITAGMGGGTGTGAAPVIA-EIAKEYGILTV---AVV 119
Query: 337 PSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVS 396
P + VV PYNA L L L E D IDN+AL DIC R L L P+++D N L++
Sbjct: 120 TKPFSFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRKLPLR-PAFKDANDLLA 178
Query: 397 ATMCGITTCLRFPG 410
+ GIT +RFPG
Sbjct: 179 QAVSGITDLIRFPG 192
Score = 114 bits (287), Expect = 8e-30
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 55 QGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYT-----EGV 109
GG P A+ VDLEPG +D VR+ + P++ G+ A NNW +G G
Sbjct: 7 VGGGGPNAVNVDLEPGVIDGVRANTDAQALNPESLASGKIQAGNNWTRGLGAGADPEVGR 66
Query: 110 ELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGS 144
E + +D R E E D G +T +GGGTG+
Sbjct: 67 EAAEESLDEIREELEGAD---GVFITAGMGGGTGT 98
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 195 bits (498), Expect = 1e-57
Identities = 76/237 (32%), Positives = 133/237 (56%), Gaps = 12/237 (5%)
Query: 171 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQ---GGYIP 227
+V +Q+GQCGNQ G + ++ +++E + ER ++ G I
Sbjct: 2 VVTVQLGQCGNQLGHELFDTLAKE------ASSSDDEGYKYERDAQERFFSEKSDGQPIA 55
Query: 228 RAILVDLEPGTMDAVRSGPYGKM--FRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDL 285
R++LVD+EP +++ S G + N + QSG+ NNWA G+Y G ++ + ++DL
Sbjct: 56 RSVLVDMEPKVIESTLSKSSGGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDL 115
Query: 286 TRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTV 345
R+E E CD +GF V HSL GGTGSG+G+ + +R+EYP+ ++ V P + +
Sbjct: 116 IRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNIVVWPY-TTGEVI 174
Query: 346 VEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
V+ YN +L+L+HL E+SD ++N+ ++ IC + L + S D+N +++ + +
Sbjct: 175 VQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASL 231
Score = 122 bits (308), Expect = 1e-30
Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 11/146 (7%)
Query: 4 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQ---GGYIP 60
+V +Q+GQCGNQ G + ++ +++E + ER ++ G I
Sbjct: 2 VVTVQLGQCGNQLGHELFDTLAKE------ASSSDDEGYKYERDAQERFFSEKSDGQPIA 55
Query: 61 RAILVDLEPGTMDAVRSGPYGKM--FRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDL 118
R++LVD+EP +++ S G + N + QSG+ NNWA G+Y G ++ + ++DL
Sbjct: 56 RSVLVDMEPKVIESTLSKSSGGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDL 115
Query: 119 TRREAENCDCMQGFQVTHSLGGGTGS 144
R+E E CD +GF V HSL GGTGS
Sbjct: 116 IRKEVEKCDSFEGFLVLHSLAGGTGS 141
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 57.0 bits (138), Expect = 6e-09
Identities = 49/216 (22%), Positives = 71/216 (32%), Gaps = 48/216 (22%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIP 227
MR ++ I VGQ G + ++ + GY
Sbjct: 1 MRVLI-IGVGQAGGRIVDALNRH-------DKRSGF--------------------GYCV 32
Query: 228 RAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGV-ELVDAVMDLT 286
A+ ++ + ++ P D L GQS KGH EL V +
Sbjct: 33 GALAINTAKNDLKGLKHIP-----AEDRILIGQSEV-----KGHGVGADRELGAEVAEED 82
Query: 287 RREAENC------DCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPK 340
E V LGGGTGSG G +L K +E + + A V+P+
Sbjct: 83 LEEVMRAIDDRGTSDADAILVIAGLGGGTGSG-GAPVLAKELKERYEEPVYALGVLPAR- 140
Query: 341 VSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDI 376
+ NA SL L E +D DN+A
Sbjct: 141 -EEGERYSANAARSLDALSEEADAIILFDNDAWKRK 175
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ
family of GTPases and is localized to the the outer
membrane of mitochondria. It has a role in mitochondrial
fusion and in mitochondrial distribution and morphology.
Mutations in its Drosophila homolog (misato) lead to
irregular chromosome segregation during mitosis.
Deletion of the budding yeast homolog DML1 is lethal and
unregulate expression of DML1 leads to mitochondrial
dispersion and abnormalities in cell morphology. The
Misato/DML1 protein family is conserved from yeast to
human, but its exact function is still unknown.
Length = 493
Score = 53.9 bits (130), Expect = 8e-08
Identities = 55/234 (23%), Positives = 83/234 (35%), Gaps = 52/234 (22%)
Query: 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-----QG 223
RE++ +Q+G N G +W QE Y+ S V Y E Q
Sbjct: 1 REVLTLQLGHYANFVGTHWWNL--QEANFG----YDPDSPASELDHDVLYREGRTRQGQV 54
Query: 224 GYIPRAILVDLEPGTMDAVRSGPYGKMFRPDN-------FL----------------HGQ 260
Y PR +L+DL+ GT+ + K++ + +L H
Sbjct: 55 TYTPRLLLLDLK-GTLGHLPEEGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDG 113
Query: 261 SGAANNWAKGHYTEGVEL------VDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMG 314
+ + +G L + D R E CD +QGFQV L G SG+G
Sbjct: 114 TSQPFE----VFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGF-SGVG 168
Query: 315 TLLLTKIREEYPDRMINAFSVVPSPKVSDT-----VVEPYNAILSLSHLIETSD 363
L +++EY + F +P D + N L L+ L E S
Sbjct: 169 AKCLEHLQDEYGKASL-LFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSS 221
Score = 40.0 bits (94), Expect = 0.002
Identities = 41/178 (23%), Positives = 61/178 (34%), Gaps = 45/178 (25%)
Query: 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-----QG 56
RE++ +Q+G N G +W QE Y+ S V Y E Q
Sbjct: 1 REVLTLQLGHYANFVGTHWWNL--QEANFG----YDPDSPASELDHDVLYREGRTRQGQV 54
Query: 57 GYIPRAILVDLEPGTMDAVRSGPYGKMFRPDN-------FL----------------HGQ 93
Y PR +L+DL+ GT+ + K++ + +L H
Sbjct: 55 TYTPRLLLLDLK-GTLGHLPEEGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDG 113
Query: 94 SGAANNWAKGHYTEGVEL------VDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSV 145
+ + +G L + D R E CD +QGFQV L G V
Sbjct: 114 TSQPFE----VFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGFSGV 167
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 303
Score = 36.8 bits (85), Expect = 0.015
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 8/118 (6%)
Query: 299 FQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHL 358
+T LGGGTG+G ++ ++ +VV P + + NA L
Sbjct: 88 VFITAGLGGGTGTGGAPVVAEHLKRIG----TLTVAVVTLPFSDEGGIRMLNAAEGFQTL 143
Query: 359 IETSDETFCIDNEALYDIC-VRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNAD 415
+ D I NE L I SL+ ++ + ++ + G+ + G++N D
Sbjct: 144 VREVDNLMVIPNEKLRQIGEKASLEG---AFDHADEVLVRAVGGLFGAIEIEGEINVD 198
>gnl|CDD|220832 pfam10644, Misat_Myo_SegII, Misato Segment II myosin-like domain.
The misato protein contains three distinct, conserved
domains, segments I, II and III. Segments I and III are
common to Tubulins pfam00091, but segment II aligns
with myosin heavy chain sequences from D. melanogaster
(PIR C35815), rabbit (SP P04460), and human (PIR
S12458). Segment II of misato is a major contributor to
its greater length compared with the various tubulins.
The most significant sequence similarities to this
54-amino acid region are from a motif found in the
heavy chains of myosins from different organisms. A
comparison of segment II with the vertebrate myosin
heavy chains reveals that it is homologous to a myosin
peptide in the hinge region linking the S2 and LMM
domains. Segment II also contains heptad repeats which
are characteristic of the myosin tail alpha-helical
coiled-coils.
Length = 103
Score = 34.3 bits (79), Expect = 0.020
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNE--AQGG-- 57
REI+ +Q+GQ N G FW QE Y+ + L V + E Q G
Sbjct: 4 REIITLQLGQYANYVGTHFW--NQQESYFT----YDPDAPESLIDHDVLFREGLTQDGVE 57
Query: 58 -YIPRAILVDLE 68
Y PR +L DL+
Sbjct: 58 TYTPRLLLYDLK 69
Score = 34.3 bits (79), Expect = 0.020
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNE--AQGG-- 224
REI+ +Q+GQ N G FW QE Y+ + L V + E Q G
Sbjct: 4 REIITLQLGQYANYVGTHFW--NQQESYFT----YDPDAPESLIDHDVLFREGLTQDGVE 57
Query: 225 -YIPRAILVDLE 235
Y PR +L DL+
Sbjct: 58 TYTPRLLLYDLK 69
>gnl|CDD|223284 COG0206, FtsZ, Cell division GTPase [Cell division and chromosome
partitioning].
Length = 338
Score = 36.1 bits (84), Expect = 0.032
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 301 VTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIE 360
VT +GGGTG+G ++ +I +E + A +P +E NA + L E
Sbjct: 101 VTAGMGGGTGTG-AAPVVAEIAKEL-GALTVAVVTLPFSFEGSPRME--NAEEGIEELRE 156
Query: 361 TSDETFCIDNEALYDI 376
D I N+ L
Sbjct: 157 VVDTLIVIPNDKLLKG 172
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain. This family
includes the tubulin alpha, beta and gamma chains.
Members of this family are involved in polymer
formation. Tubulins are GTPases. FtsZ can polymerise
into tubes, sheets, and rings in vitro and is ubiquitous
in eubacteria and archaea. Tubulin is the major
component of microtubules. (The FtsZ GTPases have been
split into their won family).
Length = 126
Score = 33.3 bits (77), Expect = 0.063
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 427 PRLHFFMSGNAPLV 440
PRLHF M+G APL
Sbjct: 1 PRLHFLMTGYAPLT 14
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain.
This domain is found in the tubulin alpha, beta and
gamma chains, as well as the bacterial FtsZ family of
proteins. These proteins are GTPases and are involved in
polymer formation. Tubulin is the major component of
microtubules, while FtsZ is the polymer-forming protein
of bacterial cell division, it is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ can polymerise into tubes,
sheets, and rings in vitro and is ubiquitous in bacteria
and archaea. This is the C-terminal domain.
Length = 120
Score = 32.9 bits (76), Expect = 0.090
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 412 LNADLRKLAVNMVPFPRLHFFMSGNAPL 439
+N D + MVP F M G P
Sbjct: 1 INVDFADVKTVMVPMG---FAMMGIGPA 25
>gnl|CDD|99910 cd05568, PTS_IIB_bgl_like, PTS_IIB_bgl_like: the PTS
(phosphotransferase system) IIB domain of a family of
sensory systems composed of a membrane-bound
sugar-sensor (similar to BglF) and a transcription
antiterminator (similar to BglG) which regulate
expression of genes involved in sugar utilization. The
domain architecture of the IIB-containing protein
includes a region N-terminal to the IIB domain which is
homologous to the BglG transcription antiterminator with
an RNA-binding domain followed by two homologous
domains, PRD1 and PRD2 (PTS Regulation Domains).
C-terminal to the IIB domain is a domain similar to the
PTS IIA domain. In this system, the BglG-like region and
the IIB and IIA-like domains are all expressed together
as a single multidomain protein. The IIB domain fold
includes a central four-stranded parallel open twisted
beta-sheet flanked by alpha-helices on both sides. The
seven major PTS systems with this IIB fold include this
sensory system with similarity to the bacterial bgl
system, chitobiose/lichenan, ascorbate, lactose,
galactitol, mannitol, and fructose systems.
Length = 85
Score = 29.0 bits (66), Expect = 1.1
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 310 GSGMGT--LLLTKIREEYPDRM-INAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETF 366
SG+GT LL +K+++ +P+ I+ S+ ++ + ++ Y+ I+S L +T
Sbjct: 8 PSGIGTSRLLKSKLKKLFPEIEIIDVISLR---ELEEVDLDDYDLIISTVPLEDTDKPVI 64
Query: 367 CI 368
+
Sbjct: 65 VV 66
>gnl|CDD|237273 PRK13018, PRK13018, cell division protein FtsZ; Provisional.
Length = 378
Score = 30.7 bits (70), Expect = 1.6
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 301 VTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIE 360
VT +GGGTG+G ++ +E + VV P + A + L E
Sbjct: 118 VTAGMGGGTGTGAAPVVAEIAKE----QGALVVGVVTKPFKFEGRARMQKAEEGIERLRE 173
Query: 361 TSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNAD 415
+D IDN L DI V +L + ++ + +++ T+ GIT + P +N D
Sbjct: 174 AADTVIVIDNNRLLDI-VPNLPIAD-AFSVADEVIAETVKGITETITKPSLINLD 226
>gnl|CDD|193426 pfam12953, DUF3842, Domain of unknown function (DUF3842). This
short protein is found mainly in firmicute bacteria. It
is functionally uncharacterized.
Length = 131
Score = 28.6 bits (65), Expect = 3.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 308 GTGSGMGTLLLTKIREEYPDR 328
G G G+G ++ K+R+E P+R
Sbjct: 7 GQGGGIGKQIIEKLRKELPER 27
>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ. This family consists
of cell division protein FtsZ, a GTPase found in
bacteria, the chloroplast of plants, and in
archaebacteria. Structurally similar to tubulin, FtsZ
undergoes GTP-dependent polymerization into filaments
that form a cytoskeleton involved in septum synthesis
[Cellular processes, Cell division].
Length = 349
Score = 28.8 bits (65), Expect = 5.6
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 301 VTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIE 360
+T +GGGTG+G ++ KI +E +VV P + + A L L +
Sbjct: 107 ITAGMGGGTGTG-AAPVVAKIAKE---LGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQ 162
Query: 361 TSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLN---ADLR 417
D I N+ L ++ V +L LN +++ + ++ + GI+ + PG +N AD+R
Sbjct: 163 AVDTLIVIPNDKLLEV-VPNLPLND-AFKVADDVLVRAVKGISELITKPGLINIDFADVR 220
>gnl|CDD|222394 pfam13809, Tubulin_2, Tubulin like. Many of the residues conserved
in Tubulin, pfam00091, are also highly conserved in this
family.
Length = 345
Score = 28.8 bits (65), Expect = 5.7
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 271 HYTEGVELVDAVMDLTRREAENCDCMQG---FQVTHSLGGGTGSGM 313
+Y + ++ + T +E +G V SL GGTGSGM
Sbjct: 120 NYQAIRQAIETALKRTFLLSEGQKVGEGGVNVFVVGSLSGGTGSGM 165
>gnl|CDD|239740 cd03771, MATH_Meprin, Meprin family, MATH domain; Meprins are
multidomain, highly glycosylated extracellular
metalloproteases, which are either anchored to the
membrane or secreted into extracellular spaces. They are
expressed in renal and intestinal brush border
membranes, leukocytes, and cancer cells, and are capable
of cleaving growth factors, cytokines, extracellular
matrix proteins, and biologically active peptides.
Meprin proteases are composed of two related subunits,
alpha and beta, which form homo- or hetro-complexes
where the basic unit is a disulfide-linked dimer.
Despite their similarity, the two subunits differ in
their ability to self-associate, in proteolytic
processing during biosynthesis and in substrate
specificity. Both subunits are synthesized as membrane
spanning proteins, however, the alpha subunit is cleaved
during biosynthesis and loses its transmembrane domain.
Meprin beta forms homodimers or heterotetramers while
meprin alpha oligomerizes into large complexes
containing 10-100 subunits. Both alpha and beta subunits
contain a catalytic astacin (M12 family) protease domain
followed by the adhesion or interaction domains MAM,
MATH and AM. The MATH and MAM domains provide
symmetrical intersubunit disulfide bonds necessary for
the dimerization of meprin subunits. The MATH domain may
also be required for folding of an activable zymogen.
Length = 167
Score = 28.1 bits (63), Expect = 5.8
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 125 NCDCMQGFQVTHSLGGGTGSVISHQNFRSANF 156
C C +G G G + ISH R +F
Sbjct: 129 GCTCYRG------PGYGWSTFISHSRLRRRDF 154
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.413
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,353,774
Number of extensions: 2133999
Number of successful extensions: 1646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1584
Number of HSP's successfully gapped: 59
Length of query: 440
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 340
Effective length of database: 6,502,202
Effective search space: 2210748680
Effective search space used: 2210748680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)