RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17915
(440 letters)
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 487 bits (1255), Expect = e-171
Identities = 110/276 (39%), Positives = 176/276 (63%), Gaps = 5/276 (1%)
Query: 169 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIP 227
REI+ +Q+GQCGNQ G +FW+++ EHG++ E + +R V++ +A YIP
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 228 RAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQ--SGAANNWAKGHYTEGVELVDAVMDL 285
RA+L+DLEP + ++ + PY K++ P+N + GA NNWA G +++G ++ + + D+
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 121
Query: 286 TRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSP-KVSDT 344
REA+ D ++GF + HS+ GGTGSG+G+ LL ++ + YP +++ +SV P+ ++SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDV 181
Query: 345 VVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 404
VV+PYN++L+L L + +D +DN AL I L + +PS+ +N LVS M TT
Sbjct: 182 VVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 241
Query: 405 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
LR+PG +N DL L +++P PRLHF M+G PL
Sbjct: 242 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLT 277
Score = 240 bits (614), Expect = 1e-74
Identities = 57/146 (39%), Positives = 94/146 (64%), Gaps = 4/146 (2%)
Query: 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIP 60
REI+ +Q+GQCGNQ G +FW+++ EHG++ E + +R V++ +A YIP
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 61 RAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQ--SGAANNWAKGHYTEGVELVDAVMDL 118
RA+L+DLEP + ++ + PY K++ P+N + GA NNWA G +++G ++ + + D+
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 121
Query: 119 TRREAENCDCMQGFQVTHSLGGGTGS 144
REA+ D ++GF + HS+ GGTGS
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGS 147
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 485 bits (1250), Expect = e-171
Identities = 118/275 (42%), Positives = 179/275 (65%), Gaps = 3/275 (1%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRY-EGTSDLQLERIQVYYNEAQGG-Y 225
+REI+ I VGQCGNQ FW +EHGL E G EG++ ++V++++ + G Y
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKY 60
Query: 226 IPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDL 285
+PRA+LVDLEPG + + G ++F + + GAANNWA+G+ EG +++D +M++
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNV 120
Query: 286 TRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTV 345
E +QGF +THS+GGG+GSG+G+L+L ++R+ YP + I FSVVPSP +SD+
Sbjct: 121 IDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSA 180
Query: 346 VEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTC 405
VEPYNAIL+L +++ +D +DNEAL+ I L + P+Y DLN++++ + +T
Sbjct: 181 VEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLNRS-PNYMDLNNIIALIVSSVTAS 239
Query: 406 LRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
LRFPG+LN DL + N+VPFP HF + AP+
Sbjct: 240 LRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMR 274
Score = 241 bits (617), Expect = 1e-75
Identities = 60/146 (41%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRY-EGTSDLQLERIQVYYNEAQGG-Y 58
+REI+ I VGQCGNQ FW +EHGL E G EG++ ++V++++ + G Y
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKY 60
Query: 59 IPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDL 118
+PRA+LVDLEPG + + G ++F + + GAANNWA+G+ EG +++D +M++
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNV 120
Query: 119 TRREAENCDCMQGFQVTHSLGGGTGS 144
E +QGF +THS+GGG+GS
Sbjct: 121 IDSAVEKTKGLQGFLMTHSIGGGSGS 146
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 476 bits (1228), Expect = e-167
Identities = 214/274 (78%), Positives = 243/274 (88%), Gaps = 1/274 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 287 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVV 346
R+E+E+CDC+QGFQ+THSLGGGTGSGMGTLL++KIREEYPDR++N FSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYNA LS+ L+E +DET+ IDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 407 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
RFPGQLNADLRKLAVNMVPFPRLHFFM G APL
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 274
Score = 252 bits (646), Expect = 1e-79
Identities = 111/145 (76%), Positives = 127/145 (87%), Gaps = 1/145 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTHSLGGGTGS 144
R+E+E+CDC+QGFQ+THSLGGGTGS
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGS 145
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 471 bits (1214), Expect = e-165
Identities = 120/276 (43%), Positives = 174/276 (63%), Gaps = 3/276 (1%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQ--LERIQVYYNEAQGG- 224
MRE + I VGQ G Q G WE EHG+ G+ + + +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 225 YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMD 284
++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V+D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 285 LTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDT 344
R+ A+ C +QGF V HS GGGTGSG +LL+ ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 345 VVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 404
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+S + IT
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 405 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
LRF G LN DL + N+VP+PR+HF ++ AP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI 276
Score = 245 bits (627), Expect = 7e-77
Identities = 63/147 (42%), Positives = 89/147 (60%), Gaps = 3/147 (2%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQ--LERIQVYYNEAQGG- 57
MRE + I VGQ G Q G WE EHG+ G+ + + +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 58 YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMD 117
++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V+D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 118 LTRREAENCDCMQGFQVTHSLGGGTGS 144
R+ A+ C +QGF V HS GGGTGS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGS 147
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 469 bits (1209), Expect = e-164
Identities = 104/280 (37%), Positives = 158/280 (56%), Gaps = 7/280 (2%)
Query: 167 KMREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYN---EAQG 223
K+ + + +GQ GNQ FW+ + EHG++ + +++ E+
Sbjct: 2 KVNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSS 61
Query: 224 G-YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAV 282
G Y+PRAI+VDLEP +D V++ G +F P N + GA N+A G+ G E++ V
Sbjct: 62 GSYVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEV 120
Query: 283 MDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVS 342
M E + CD + G V H++GGGTGSG G LL+ ++E+Y + + + +V+PSP+VS
Sbjct: 121 MSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVS 180
Query: 343 DTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGI 402
V EPYN + +L+ L ++D DNEAL+D+ R + SP+ DLN L++ + GI
Sbjct: 181 SVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGI 240
Query: 403 TTCLRFPGQLNAD--LRKLAVNMVPFPRLHFFMSGNAPLV 440
T +RF G L + LR+L N+VP P LHF M APL
Sbjct: 241 TASMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLT 280
Score = 235 bits (600), Expect = 1e-72
Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 5/148 (3%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYN---EAQGG 57
+ + + +GQ GNQ FW+ + EHG++ + +++ E+ G
Sbjct: 3 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 62
Query: 58 -YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVM 116
Y+PRAI+VDLEP +D V++ G +F P N + GA N+A G+ G E++ VM
Sbjct: 63 SYVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 121
Query: 117 DLTRREAENCDCMQGFQVTHSLGGGTGS 144
E + CD + G V H++GGGTGS
Sbjct: 122 SRLDYEIDKCDNVGGIIVLHAIGGGTGS 149
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 48.5 bits (115), Expect = 2e-06
Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 22/146 (15%)
Query: 275 GVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFS 334
++ + +CD ++ GG GSG+ +L ++ YP++
Sbjct: 71 AQTYYKQIIAQIMEKFSSCD---IVIFVATMAGGAGSGITPPILGLAKQMYPNKHFGFVG 127
Query: 335 VVPSPKVSDTVVEPYNAILSLSHLIETSDET-----FCIDNEALYDICVRSLKLNSPSYR 389
V+P ++ + E NAI + ++ +++E + +DN
Sbjct: 128 VLPKA--TEDIDEHMNAIACWNDIMRSTNEGKDISIYLLDNNKRE------------KES 173
Query: 390 DLNHLVSATMCGITTCLRFPGQLNAD 415
D+N + + D
Sbjct: 174 DINKEFATLFNDFMNMSESHAEGVVD 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 80/426 (18%), Positives = 138/426 (32%), Gaps = 146/426 (34%)
Query: 10 GQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRA--ILVDL 67
GQ GN ++EE+ ++ Y+ T Y+ G I + L +L
Sbjct: 162 GQ-GNTD--DYFEEL-RD-------LYQ-T-----------YHVLVGDLIKFSAETLSEL 198
Query: 68 EPGTMDAVRSGPYGKMFRPDNFLHGQSGAANN---------------WAKGHYTEGVELV 112
T+DA + + + +L S + HY +V
Sbjct: 199 IRTTLDAEKV--FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY-----VV 251
Query: 113 DA-VMDLTRREAENCDCMQGFQVTHSLGGGTGSVISHQNFRSANFKSKIFGKTKTKMREI 171
A ++ T E ++G HS G T I+ + +++S F + K +
Sbjct: 252 TAKLLGFTPGEL--RSYLKGA-TGHSQGLVTAVAIAE----TDSWES--FFVSVRKAITV 302
Query: 172 VHIQVGQCGNQT--GVKFWEEISQ---EHGLNEMGRYEGT-------SDLQLERIQVYYN 219
+ +G + I + E+ EG S+L E++Q Y N
Sbjct: 303 L-FFIGVRCYEAYPNTSLPPSILEDSLENN-------EGVPSPMLSISNLTQEQVQDYVN 354
Query: 220 EAQGGYIP--RAILVDLEPGTMDAVRSGP----YG------KMFRPDN------------ 255
+ ++P + + + L G + V SGP YG K P
Sbjct: 355 KTNS-HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 256 ------FL------HGQ--SGAA---NNWAKGHYTE--GVELVDAV------MDLTRREA 290
FL H A+ N + ++ V DL R +
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-RVLS 472
Query: 291 EN-----CDCM----------QGFQVTHSL--GGGTGSGMGTLLLTKIREEYPDRMINAF 333
+ DC+ F+ TH L G G SG+G L + ++ R+I A
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV-LTHRNKDGTGVRVIVAG 531
Query: 334 SVVPSP 339
++ +P
Sbjct: 532 TLDINP 537
Score = 41.6 bits (97), Expect = 5e-04
Identities = 46/294 (15%), Positives = 74/294 (25%), Gaps = 95/294 (32%)
Query: 192 SQEHGLNEMGR--YEGTSDLQ---LERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGP 246
SQE G MG Y+ TS R ++ + G I +V P + G
Sbjct: 1626 SQEQG---MGMDLYK-TSKAAQDVWNRADNHFKDTYGFSILD--IVINNPVNLTIHFGGE 1679
Query: 247 YGKMFRPDNF---LHGQSGAANNWAKGHYTEGVELV--------DAVMDLTR-------- 287
GK R +N+ + + + E E ++ T+
Sbjct: 1680 KGKRIR-ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 288 ---------REA---ENCDCMQGFQVTHSLG-----GGTGSGMG---TLLLTKIREEYPD 327
+ G HSLG M + + R
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAG----HSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 328 RMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLK----- 382
+ + S + P S EAL + R K
Sbjct: 1795 VAVPRDELGRS-NYGMIAINPGRVAASF-------------SQEALQYVVERVGKRTGWL 1840
Query: 383 -----LNSPS--Y------RDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNM 423
N + Y R L+ + T L F D+ +L ++
Sbjct: 1841 VEIVNYNVENQQYVAAGDLRALDTV--------TNVLNFIKLQKIDIIELQKSL 1886
Score = 36.6 bits (84), Expect = 0.019
Identities = 56/279 (20%), Positives = 83/279 (29%), Gaps = 114/279 (40%)
Query: 23 EISQEHGLNEMGRYEGT-------SDLQLERIQVYYNEAQGGYIP--RAILVDLEPGTMD 73
E S E+ EG S+L E++Q Y N+ ++P + + + L G +
Sbjct: 325 EDSLENN-------EGVPSPMLSISNLTQEQVQDYVNKTNS-HLPAGKQVEISLVNGAKN 376
Query: 74 AVRSGP----YG------KMFRPDN------------------FL------HGQSGAANN 99
V SGP YG K P FL H S
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH--S----- 429
Query: 100 WAKGHY-TEGVELVDAVMDLTRREAE--NCDCMQGFQVTHSLGGGTGSVISHQNFR--SA 154
H +L++ DL + D V + GS + R S
Sbjct: 430 ----HLLVPASDLINK--DLVKNNVSFNAKDI--QIPVYDT---FDGS-----DLRVLSG 473
Query: 155 NFKSKIFGKTKTKMREIVHIQVGQCGNQTGVKFWEEISQE---HGLNEMGR--YEGTSDL 209
+ +I I+ + V WE +Q H L + G G L
Sbjct: 474 SISERIV-------DCIIRLPV----------KWETTTQFKATHIL-DFGPGGASGLGVL 515
Query: 210 QLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYG 248
R + + G R I+ GT+D YG
Sbjct: 516 -THRNK----DGTG---VRVIVA----GTLDINPDDDYG 542
Score = 32.3 bits (73), Expect = 0.40
Identities = 76/473 (16%), Positives = 127/473 (26%), Gaps = 192/473 (40%)
Query: 37 EGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGP------YGKMFRPDNFL 90
+ T E I+ Y A+ R AV G +G
Sbjct: 113 DTTLVKTKELIKNYI-TARI-MAKRPFDKKSNSALFRAVGEGNAQLVAIFG--------- 161
Query: 91 HGQSGAANNWAKGHYTEGVELVD-------AVMDLTRREAENCD------------CMQG 131
GQ G +++ + EL D V DL + AE QG
Sbjct: 162 -GQ-GNTDDYFE-------ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 132 FQVTHSLGGGTGSVISHQNFRS-------------ANFK--SKIFGKTKTKMREIVHIQV 176
+ + S A++ +K+ G T ++R +
Sbjct: 213 LNI-LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK--- 268
Query: 177 GQCGNQTGV---------KFWEEISQEHGLNEMGRYEGTSDLQLE---RIQVYYNEAQGG 224
G G+ G+ WE + + + I V
Sbjct: 269 GATGHSQGLVTAVAIAETDSWES------------FFVSVRKAITVLFFIGV---RCYEA 313
Query: 225 YIPRAILVDLEPGTM-DAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVE---LVD 280
Y P L P + D++ + EGV L
Sbjct: 314 Y-PN---TSLPPSILEDSLENN----------------------------EGVPSPML-- 339
Query: 281 AVMDLTRREAE------NCDCMQGFQVTHSLGGG------TGS-----GMGTLL------ 317
++ +LT+ + + N G QV SL G +G G+ L
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 318 --LTKIREEYPDRMINAFSVVPSPKVS---DTVVEPYNAILSLSHLIETSDETFCIDNEA 372
L + R + +R K S V P++ SHL+ + + D
Sbjct: 400 SGLDQSRIPFSER---------KLKFSNRFLPVASPFH-----SHLLVPASDLINKDLVK 445
Query: 373 LYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVP 425
++ + + P Y T G +DLR L+ ++
Sbjct: 446 -NNVSFNAKDIQIPVY--------DTFDG------------SDLRVLSGSISE 477
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 37.6 bits (86), Expect = 0.007
Identities = 37/227 (16%), Positives = 67/227 (29%), Gaps = 41/227 (18%)
Query: 155 NFKSKIFGKTKTKMREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERI 214
+ S +R I GQ GN+ F
Sbjct: 30 HIHSTNHSVNDISIR-WGVIGAGQKGNKEADLFAG------------------------- 63
Query: 215 QVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTE 274
Y + G + V+ M +++ D L G + + E
Sbjct: 64 ---YKFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRIHFDG-LKGAARTPSVVTDLFDPE 119
Query: 275 GVELVDAVMD--LTRREAENCDCMQG-----FQVTHSLGGGTGSGMGTLLLTKIREEYPD 327
+ +D + + F + GGG G+G G+L+L IRE++
Sbjct: 120 TNPNANGYLDKLAQELGRKFTNEEGEVIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFP 179
Query: 328 RMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALY 374
++ +PS + NA++ LS + E E + +
Sbjct: 180 CPVSMLISLPSGDPDEI----NNALVLLSEIDEFMREQDRLFGNSDI 222
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 36.6 bits (84), Expect = 0.015
Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 15/147 (10%)
Query: 277 ELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVV 336
+ + + ++E E+ D +T LGGGTG+G + + E N ++
Sbjct: 96 KHETKIFEAVKQEFEDRD-F--IWITCGLGGGTGTGALLKAIEMLYEHD----YNFGLLL 148
Query: 337 PSPKVSDTVVEPYNAILSLSHLIETSDETFC---IDNEALYDICVRSLKLNSPS--YRDL 391
P+ ++ + NA + + + IDN LY +
Sbjct: 149 TLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKLYRKFEEENPSALANEYTSYS 208
Query: 392 NHLVS---ATMCGITTCLRFPGQLNAD 415
N ++ + +T+ + D
Sbjct: 209 NKYIADALHEINLVTSSFTPFSDTHFD 235
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 33.7 bits (77), Expect = 0.077
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 12/119 (10%)
Query: 317 LLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDI 376
+ I +E P+ ++ A +V+ +P+ V E L E L
Sbjct: 57 AIRAIAKEVPEAIVGAGTVL-NPQQLAEVTEAGAQFAISPGL-----------TEPLLKA 104
Query: 377 CVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSG 435
P ++ L+ G+ FP + N ++ L PF ++ F +G
Sbjct: 105 ATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTG 163
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four
helix bundle, hydrolase/hydrolase inhibitor complex;
1.90A {Actinidia chinensis}
Length = 153
Score = 30.7 bits (69), Expect = 0.53
Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 16/96 (16%)
Query: 343 DTVVEPYNAILSLSHLIETSDETFCIDN-EALYDICVRSLK-----LNSPSYRDLNHLVS 396
+ + I SL++ + Y + SL L S Y LN S
Sbjct: 47 ASAKQTSKIIASLTNQATDPKLKGRYETCSENYADAIDSLGQAKQFLTSGDYNSLNIYAS 106
Query: 397 ATMCGITTCLR-FPG---------QLNADLRKLAVN 422
A G TC F G Q + L L
Sbjct: 107 AAFDGAGTCEDSFEGPPNIPTQLHQADLKLEDLCDI 142
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 31.0 bits (69), Expect = 0.68
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 301 VTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIE 360
V +SLGGG+GS +G L+ ++ DR + S V S + N I ++ L
Sbjct: 86 VCYSLGGGSGSVLGPLITGQL----ADRKASFVSFVVGAMESTDNLG--NDIDTMKTLEA 139
Query: 361 TSDET 365
+
Sbjct: 140 IAVNK 144
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 29.8 bits (67), Expect = 1.4
Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 12/119 (10%)
Query: 317 LLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDI 376
+ +R+ P+ +I A +++ + + + E + N
Sbjct: 75 AIRLLRQAQPEMLIGAGTIL-NGEQALAAKEAGATFVVSPGF-----------NPNTVRA 122
Query: 377 CVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSG 435
C P + + + +A G+TT FP + + + + + P+ + +G
Sbjct: 123 CQEIGIDIVPGVNNPSTVEAALEMGLTTLKFFPAEASGGISMVKSLVGPYGDIRLMPTG 181
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 29.8 bits (67), Expect = 1.4
Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 12/119 (10%)
Query: 317 LLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDI 376
+ +R PD +I A +V+ + + + N + +
Sbjct: 58 AIRLLRANRPDFLIAAGTVL-TAEQVVLAKSSGADFVVTPG-----------LNPKIVKL 105
Query: 377 CVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSG 435
C +P + + A GI+ FP + + ++ + + P+ +L +G
Sbjct: 106 CQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIMPTG 164
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, MGA family; 2.31A
{Enterococcus faecalis}
Length = 485
Score = 30.3 bits (68), Expect = 1.6
Identities = 7/63 (11%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 308 GTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFC 367
L ++ R+ + ++S + + I+S L F
Sbjct: 406 QGEPAWKAFLQQELAAYLGTRVK--LQAIEYVELSQLTLNEADIIISNFPLDHLDLPVFY 463
Query: 368 IDN 370
+
Sbjct: 464 LSL 466
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 29.4 bits (66), Expect = 1.7
Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 6/119 (5%)
Query: 317 LLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDI 376
++ I++ P+ ++ A +V + ++ + L I+ +
Sbjct: 54 AISAIKKAVPEAIVGAGTVC-TADDFQKAIDAGAQFIVSPGLTP-----ELIEKAKQVKL 107
Query: 377 CVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSG 435
+ + P + ++ A GIT FP + L PFP + F +G
Sbjct: 108 DGQWQGVFLPGVATASEVMIAAQAGITQLKCFPASAIGGAKLLKAWSGPFPDIQFCPTG 166
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate,
beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Length = 225
Score = 29.4 bits (66), Expect = 1.9
Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 12/119 (10%)
Query: 317 LLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDI 376
+ +RE+ P+ + A +V+ + V + + E + +
Sbjct: 67 AIQVLREQRPELCVGAGTVL-DRSMFAAVEAAGAQFVVTPGI-----------TEDILEA 114
Query: 377 CVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSG 435
V S P + ++ G FP +++ + + PF + F +G
Sbjct: 115 GVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAFGGPFGDIRFCPTG 173
>1x91_A Invertase/pectin methylesterase inhibitor family protein;
four-helix bundle, alpha hairpin, disulfide bridge,
domain- swapping, linker; 1.50A {Arabidopsis thaliana}
SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Length = 153
Score = 28.4 bits (63), Expect = 2.5
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 16/90 (17%)
Query: 349 YNAILSLSHLIETSDETFCIDN-EALYDICVRSLK-----LNSPSYRDLNHLVSATMCGI 402
+ S+ + Y+ + +L+ L S +N VSA + G
Sbjct: 53 LKKLQSIIDGGVDPRSKLAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGA 112
Query: 403 TTCLR-FPG---------QLNADLRKLAVN 422
TCL + ++ L
Sbjct: 113 DTCLDDVKRLRSVDSSVVNNSKTIKNLCGI 142
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 29.1 bits (65), Expect = 3.4
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 19/110 (17%)
Query: 3 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRA 62
E H GN+ ++ W +++ + GL + ++
Sbjct: 302 EYFH---QYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKT--VTTRLSHVDLLRSVQ 356
Query: 63 ILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELV 112
L D S P RP++++ + N + Y +G E++
Sbjct: 357 FLED----------SSPLSHPIRPESYVSME----NFYTTTVYDKGSEVM 392
Score = 29.1 bits (65), Expect = 3.4
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 19/110 (17%)
Query: 170 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRA 229
E H GN+ ++ W +++ + GL + ++
Sbjct: 302 EYFH---QYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKT--VTTRLSHVDLLRSVQ 356
Query: 230 ILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELV 279
L D S P RP++++ + N + Y +G E++
Sbjct: 357 FLED----------SSPLSHPIRPESYVSME----NFYTTTVYDKGSEVM 392
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 8.4
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 279 VDAVMD--LTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVV 336
V+A + +T E + +V G +GSGMG ++ +R + DR
Sbjct: 1021 VEAFIASGITD-PYEMYKYVHVSEV----GNCSGSGMGG--VSALRGMFKDRF------K 1067
Query: 337 PSPKVSDTVVE 347
P +D + E
Sbjct: 1068 DEPVQNDILQE 1078
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.413
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,884,497
Number of extensions: 416855
Number of successful extensions: 883
Number of sequences better than 10.0: 1
Number of HSP's gapped: 859
Number of HSP's successfully gapped: 32
Length of query: 440
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 344
Effective length of database: 4,021,377
Effective search space: 1383353688
Effective search space used: 1383353688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)