RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17915
(440 letters)
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 360 bits (924), Expect = e-125
Identities = 188/243 (77%), Positives = 216/243 (88%), Gaps = 1/243 (0%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 226
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 227 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 286
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 287 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVV 346
R+E+E+CDC+QGFQ+THSLGGGTGSGMGTLL++KIREEYPDR++N FSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 347 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 406
EPYNA LS+ L+E +DET+CIDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 407 RFP 409
RFP
Sbjct: 241 RFP 243
Score = 209 bits (532), Expect = 7e-66
Identities = 111/148 (75%), Positives = 128/148 (86%), Gaps = 1/148 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTHSLGGGTGSVIS 147
R+E+E+CDC+QGFQ+THSLGGGTGS +
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMG 148
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 330 bits (847), Expect = e-113
Identities = 105/244 (43%), Positives = 151/244 (61%), Gaps = 3/244 (1%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL--ERIQVYYNEAQGG- 224
MRE + I VGQ G Q G WE EHG+ G+ + + +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 225 YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMD 284
++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V+D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 285 LTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDT 344
R+ A+ C +QGF V HS GGGTGSG +LL+ ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 345 VVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 404
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+ + IT
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 405 CLRF 408
LRF
Sbjct: 241 SLRF 244
Score = 189 bits (482), Expect = 2e-58
Identities = 63/147 (42%), Positives = 89/147 (60%), Gaps = 3/147 (2%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL--ERIQVYYNEAQGG- 57
MRE + I VGQ G Q G WE EHG+ G+ + + +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 58 YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMD 117
++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V+D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 118 LTRREAENCDCMQGFQVTHSLGGGTGS 144
R+ A+ C +QGF V HS GGGTGS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGS 147
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 317 bits (813), Expect = e-108
Identities = 86/245 (35%), Positives = 138/245 (56%), Gaps = 5/245 (2%)
Query: 168 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNE----AQG 223
+ + + +GQ GNQ FW+ + EHG++ + ++++ + G
Sbjct: 1 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 60
Query: 224 GYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVM 283
Y+PRAI+VDLEP +D V++ G +F P N + GA N+A G+ G E++ VM
Sbjct: 61 SYVPRAIMVDLEPSVIDNVKA-TSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 119
Query: 284 DLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSD 343
E + CD + G V H++GGGTGSG G LL+ ++E+Y + + + +V+PSP+VS
Sbjct: 120 SRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSS 179
Query: 344 TVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGIT 403
V EPYN + +L+ L ++D DNEAL+D+ R + SP+ DLN L++ + GIT
Sbjct: 180 VVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGIT 239
Query: 404 TCLRF 408
+RF
Sbjct: 240 ASMRF 244
Score = 170 bits (432), Expect = 6e-51
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 5/148 (3%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNE----AQG 56
+ + + +GQ GNQ FW+ + EHG++ + ++++ + G
Sbjct: 1 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 60
Query: 57 GYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVM 116
Y+PRAI+VDLEP +D V++ G +F P N + GA N+A G+ G E++ VM
Sbjct: 61 SYVPRAIMVDLEPSVIDNVKA-TSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 119
Query: 117 DLTRREAENCDCMQGFQVTHSLGGGTGS 144
E + CD + G V H++GGGTGS
Sbjct: 120 SRLDYEIDKCDNVGGIIVLHAIGGGTGS 147
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 184
Score = 66.1 bits (161), Expect = 2e-13
Identities = 28/31 (90%), Positives = 28/31 (90%)
Query: 410 GQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
GQLNADLRKLAVNMVPFPRLHFFM G APL
Sbjct: 1 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 31
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 195
Score = 66.1 bits (161), Expect = 2e-13
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 410 GQLNADLRKLAVNMVPFPRLHFFMSGNAPLV 440
G LN DL + N+VP+PR HF ++ AP++
Sbjct: 1 GALNVDLTEFQTNLVPYPRGHFPLATYAPVI 31
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 180
Score = 56.9 bits (137), Expect = 3e-10
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 415 DLRKLAVNMVPFPRLHFFMSGNAPLV 440
LR+L N+VP P LHF M APL
Sbjct: 3 SLRELLTNLVPQPSLHFLMCAFAPLT 28
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 41.4 bits (97), Expect = 7e-05
Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 8/146 (5%)
Query: 268 AKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPD 327
A + G + + E D + +T +GGGTG+G ++ +E
Sbjct: 61 AGANPEVGRQAALEDRERISEVLEGADMVF---ITTGMGGGTGTGAAPIIAEVAKEMG-- 115
Query: 328 RMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPS 387
I +VV P + A + L E+ D I NE L I + L + +
Sbjct: 116 --ILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLA-A 172
Query: 388 YRDLNHLVSATMCGITTCLRFPGQLN 413
+ + +++ + GI+ ++ PG +N
Sbjct: 173 FAKADDVLAGAVRGISDIIKRPGMIN 198
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 37.3 bits (86), Expect = 0.001
Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 6/135 (4%)
Query: 277 ELVDAVMDLTRREAEN-CDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSV 335
E+ + + + +T GGGTG+G ++ +E I ++
Sbjct: 65 EIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMG----ILTVAI 120
Query: 336 VPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLV 395
V +P + AI L L + D I N L + R +K+ ++ + +
Sbjct: 121 VTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKD-AFLKADETL 179
Query: 396 SATMCGITTCLRFPG 410
+ GI+ + G
Sbjct: 180 HQGVKGISELITKRG 194
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 36.4 bits (84), Expect = 0.003
Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 7/159 (4%)
Query: 260 QSGAANNWAKGHYTEGVELVDAVMDLTRREAENC-----DCMQGFQVTHSLGGGTGSGMG 314
S A G + A ++ R+ AE+ + ++G + + G G G G
Sbjct: 42 MSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAKDEIEELLRGADMVF-VTAGEGGGTG 100
Query: 315 TLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALY 374
T + VV P + A ++ L E+ D I N+ L
Sbjct: 101 TGGAPVVASIARKLGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLL 160
Query: 375 DICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLN 413
+ ++ L ++R + ++ + GIT + PG +N
Sbjct: 161 QMGDAAVSLMD-AFRSADEVLLNGVQGITDLITTPGLIN 198
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 34.1 bits (78), Expect = 0.016
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 268 AKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPD 327
A G+ G E + + ++ D +T LGGGTG+G ++ ++
Sbjct: 75 AGGNPKIGEEAAKESAEEIKAAIQDSDM---VFITCGLGGGTGTGSAPVVAEISKKIG-- 129
Query: 328 RMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDI 376
+VV P V + V NA+ L L + +D I NE L++I
Sbjct: 130 --ALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEI 176
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId:
303]}
Length = 216
Score = 29.2 bits (65), Expect = 0.83
Identities = 11/70 (15%), Positives = 23/70 (32%)
Query: 370 NEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRL 429
E + + V S P + ++ G FP +++ + + PF +
Sbjct: 99 TEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAFGGPFGDI 158
Query: 430 HFFMSGNAPL 439
F +G
Sbjct: 159 RFCPTGGVNP 168
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 28.1 bits (62), Expect = 1.2
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 367 CIDNEALYDICVRSLK-----LNSPSYRDLNHLVSATMCGITTC---LRFPGQLNADLRK 418
C+D Y+ + +L+ L S +N VSA + G TC ++ +++ +
Sbjct: 71 CVD---EYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVVN 127
Query: 419 LAVNM 423
+ +
Sbjct: 128 NSKTI 132
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54)
N-terminal domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 239
Score = 26.6 bits (58), Expect = 6.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 40 SDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSG 78
D Q ++Q GG PR I V LE +D + G
Sbjct: 169 LDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPG 207
Score = 26.6 bits (58), Expect = 6.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 207 SDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSG 245
D Q ++Q GG PR I V LE +D + G
Sbjct: 169 LDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPG 207
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
562]}
Length = 213
Score = 25.7 bits (56), Expect = 9.3
Identities = 13/70 (18%), Positives = 23/70 (32%)
Query: 370 NEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRL 429
E L P ++ L+ G+ FP + N ++ L PF ++
Sbjct: 97 TEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQV 156
Query: 430 HFFMSGNAPL 439
F +G
Sbjct: 157 RFCPTGGISP 166
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus
influenzae [TaxId: 727]}
Length = 212
Score = 25.7 bits (56), Expect = 9.7
Identities = 12/70 (17%), Positives = 27/70 (38%)
Query: 370 NEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRL 429
N + +C +P + + A GI+ FP + + ++ + + P+ +L
Sbjct: 96 NPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYAQL 155
Query: 430 HFFMSGNAPL 439
+G L
Sbjct: 156 QIMPTGGIGL 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.413
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,666,082
Number of extensions: 76403
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 20
Length of query: 440
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,199,356
Effective search space: 422173312
Effective search space used: 422173312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)