BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17917
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 136/293 (46%), Gaps = 33/293 (11%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFL----- 91
N LT+ ++ K+R +++L +AD F ++ F+TT + T +HG F+
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLY---TSLHGYFVFGPTG 110
Query: 92 CTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQ 151
C + F ++L + ++ I RY+++ M N + +AF + ++
Sbjct: 111 CNLQGFFATLGGEIALWSLVVLAIERYVVVCK-PMSNFRFGENHAIMGVAFTWVMALACA 169
Query: 152 IPTLAGQWGRFDLDTRLLTCSI---LPDE--NGRSSKRALFLIGFVIPCVIIILCYAKIF 206
P L G W R+ + +C I P E N S +F++ F+IP ++I CY ++
Sbjct: 170 APPLVG-WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLV 228
Query: 207 WVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVK--- 263
+ V+ + + + Q+ ++ + +T+MV+++ ++FL C+LP V
Sbjct: 229 FTVKEA------------AAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYI 276
Query: 264 -TVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRL 315
T P I F SA NP+IY++MNKQ+R T L C KN L
Sbjct: 277 FTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPL 329
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 136/293 (46%), Gaps = 33/293 (11%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFL----- 91
N LT+ ++ K+R +++L +AD F ++ F+TT + T +HG F+
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLY---TSLHGYFVFGPTG 110
Query: 92 CTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQ 151
C + F ++L + ++ I RY+++ M N + +AF + ++
Sbjct: 111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCK-PMSNFRFGENHAIMGVAFTWVMALACA 169
Query: 152 IPTLAGQWGRFDLDTRLLTCSI---LPDE--NGRSSKRALFLIGFVIPCVIIILCYAKIF 206
P L G W R+ + +C I P E N S +F++ F+IP ++I CY ++
Sbjct: 170 APPLVG-WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLV 228
Query: 207 WVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVK--- 263
+ V+ + + + Q+ ++ + +T+MV+++ ++FL C+LP V
Sbjct: 229 FTVKEA------------AAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYI 276
Query: 264 -TVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRL 315
T P I F SA NP+IY++MNKQ+R T L C KN L
Sbjct: 277 FTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPL 329
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 136/293 (46%), Gaps = 33/293 (11%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFL----- 91
N LT+ ++ K+R +++L +AD F ++ F+TT + T +HG F+
Sbjct: 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLY---TSLHGYFVFGPTG 109
Query: 92 CTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQ 151
C + F ++L + ++ I RY+++ M N + +AF + ++
Sbjct: 110 CNLEGFFATLGGEIALWSLVVLAIERYVVVCK-PMSNFRFGENHAIMGVAFTWVMALACA 168
Query: 152 IPTLAGQWGRFDLDTRLLTCSI---LPDE--NGRSSKRALFLIGFVIPCVIIILCYAKIF 206
P L G W R+ + +C I P E N S +F++ F+IP ++I CY ++
Sbjct: 169 APPLVG-WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLV 227
Query: 207 WVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVK--- 263
+ V+ + + + Q+ ++ + +T+MV+++ ++FL C+LP V
Sbjct: 228 FTVKEA------------AAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYI 275
Query: 264 -TVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRL 315
T P I F SA NP+IY++MNKQ+R T L C KN L
Sbjct: 276 FTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPL 328
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 136/293 (46%), Gaps = 33/293 (11%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFL----- 91
N LT+ ++ K+R +++L +AD F ++ F+TT + T +HG F+
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLY---TSLHGYFVFGPTG 110
Query: 92 CTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQ 151
C + F ++L + ++ I RY+++ M N + +AF + ++
Sbjct: 111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCK-PMSNFRFGENHAIMGVAFTWVMALACA 169
Query: 152 IPTLAGQWGRFDLDTRLLTCSI---LPDE--NGRSSKRALFLIGFVIPCVIIILCYAKIF 206
P L G W R+ + +C I P E N S +F++ F+IP ++I CY ++
Sbjct: 170 APPLVG-WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLV 228
Query: 207 WVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVK--- 263
+ V+ + + + Q+ ++ + +T+MV+++ ++FL C+LP V
Sbjct: 229 FTVKEA------------AAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYI 276
Query: 264 -TVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRL 315
T P I F SA NP+IY++MNKQ+R T L C KN L
Sbjct: 277 FTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPL 329
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 136/293 (46%), Gaps = 33/293 (11%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFL----- 91
N LT+ ++ K+R +++L +AD F ++ F+TT + T +HG F+
Sbjct: 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLY---TSLHGYFVFGPTG 109
Query: 92 CTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQ 151
C + F ++L + ++ I RY+++ M N + +AF + ++
Sbjct: 110 CNLEGFFATLGGEIALWSLVVLAIERYVVVCK-PMSNFRFGENHAIMGVAFTWVMALACA 168
Query: 152 IPTLAGQWGRFDLDTRLLTCSI---LPDE--NGRSSKRALFLIGFVIPCVIIILCYAKIF 206
P L G W R+ + +C I P E N S +F++ F+IP ++I CY ++
Sbjct: 169 APPLVG-WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLV 227
Query: 207 WVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVK--- 263
+ V+ + + + Q+ ++ + +T+MV+++ ++FL C+LP V
Sbjct: 228 FTVKEA------------AAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYI 275
Query: 264 -TVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRL 315
T P I F SA NP+IY++MNKQ+R T L C KN L
Sbjct: 276 FTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPL 328
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 135/293 (46%), Gaps = 33/293 (11%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFL----- 91
N LT+ ++ K+R +++L +AD F ++ F+TT + T +HG F+
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLY---TSLHGYFVFGPTG 110
Query: 92 CTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQ 151
C + F ++L + ++ I RY+++ M N + +AF + ++
Sbjct: 111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCK-PMSNFRFGENHAIMGVAFTWVMALACA 169
Query: 152 IPTLAGQWGRFDLDTRLLTCSI---LPDE--NGRSSKRALFLIGFVIPCVIIILCYAKIF 206
P L G W R+ + +C I P E N S +F++ F+IP ++I CY ++
Sbjct: 170 APPLVG-WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLV 228
Query: 207 WVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVK--- 263
+ V+ + + + Q+ ++ + +T+MV++ ++FL C+LP V
Sbjct: 229 FTVKEA------------AAQQQESATTQKAEKEVTRMVIIYVIAFLICWLPYAGVAFYI 276
Query: 264 -TVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRL 315
T P I F SA NP+IY++MNKQ+R T L C KN L
Sbjct: 277 FTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPL 329
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 124/274 (45%), Gaps = 13/274 (4%)
Query: 49 KIRNVAAAFIVSLCIADFFFCLL-VIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSL 107
++ A FI++L +DF F L+ P T + K WI G C V FI +S+
Sbjct: 63 SLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSI 122
Query: 108 SCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTR 167
+AMI+I+RY +I + MI F + S I + G WG + L+
Sbjct: 123 MTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFG-WGAYTLEGV 181
Query: 168 LLTCS---ILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQ 224
L CS I D RS+ +F++GF P +II CY I V + EK + ++
Sbjct: 182 LCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLN 241
Query: 225 SKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVDS----EVHFPGLHVISYI 280
+K+ +K +MR+ K+ +VI FL + P VV + E P + +
Sbjct: 242 AKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVM 301
Query: 281 FLYLSACINPIIYVIMNKQYRVA----YKTVLMC 310
F SA NP+IY + + ++R A + VL C
Sbjct: 302 FAKASAIHNPMIYSVSHPKFREAISQTFPWVLTC 335
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 125/277 (45%), Gaps = 13/277 (4%)
Query: 46 RCPKIRNVAAAFIVSLCIADFFFCLL-VIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVG 104
+ ++ A FI++L +DF F L+ P T + K WI G C V FI
Sbjct: 61 KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGF 120
Query: 105 VSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDL 164
+S+ +AMI+I+RY +I + MI F + S I + G WG + L
Sbjct: 121 MSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFG-WGAYTL 179
Query: 165 DTRLLTCS---ILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTS 221
+ L CS I D RS+ +F++GF P +II CY I V + EK +
Sbjct: 180 EGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAK 239
Query: 222 KIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVDS----EVHFPGLHVI 277
++ +K+ +K +MR+ K+ +VI FL + P VV + E P +
Sbjct: 240 RLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQL 299
Query: 278 SYIFLYLSACINPIIYVIMNKQYRVA----YKTVLMC 310
+F SA NP+IY + + ++R A + VL C
Sbjct: 300 PVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTC 336
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 130/286 (45%), Gaps = 29/286 (10%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + A+ +++ + FI SL AD LLV+PF T TW+ G FLC +
Sbjct: 29 NVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWT 88
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLA 156
+ V S+ + +I I+RY+ I Y ++ +I +A+S + +
Sbjct: 89 SLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIM 148
Query: 157 GQWGRFDLDTRLLTCSILPD----ENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSS 212
W R D D + L C P R+ A +I F IP +I+I +++ R +
Sbjct: 149 MHWWR-DEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVY---REA 204
Query: 213 EKRLR-------RHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTV 265
++++R R TS++ ++ K LK + +I F C+LP +V V
Sbjct: 205 KEQIRKIDRASKRKTSRVMLMREHKALKT----------LGIIMGVFTLCWLPFFLVNIV 254
Query: 266 D--SEVHFPGLHVISYIFL-YLSACINPIIYVIMNKQYRVAYKTVL 308
+ + P +++ +L Y ++ +NPIIY + +R A+K +L
Sbjct: 255 NVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLL 299
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 129/279 (46%), Gaps = 17/279 (6%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + A+ +++ + FI SL AD LLV+PF T TW+ G FLC +
Sbjct: 29 NVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWT 88
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLA 156
+ V S+ + +I I+RY+ I Y ++ +I +A+S + +
Sbjct: 89 SLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIM 148
Query: 157 GQWGRFDLDTRLLTCSILPD----ENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSS 212
W R D D + L C P R+ A +I F IP +I+I +++ R +
Sbjct: 149 MHWWR-DEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVY---REA 204
Query: 213 EKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVD--SEVH 270
++++R KI +K + R + + K + +I F C+LP +V V+ +
Sbjct: 205 KEQIR----KIDRASKRKRVMLMR-EHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL 259
Query: 271 FPGLHVISYIFL-YLSACINPIIYVIMNKQYRVAYKTVL 308
P +++ +L Y ++ +NPIIY + +R A+K +L
Sbjct: 260 VPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLL 297
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 12/174 (6%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
NSL + ++R K++ +I +L +AD +PF +T + +W G LC +V
Sbjct: 40 NSLVMFVIIRYTKMKTATNIYIFNLALADALVTT-TMPFQSTVYLMNSWPFGDVLCKIVL 98
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYAL---SFGMQIP 153
I Y N+ S+ + M++++RYI + H P+ +I C L S G+
Sbjct: 99 SIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPL-KAKIINICIWLLSSSVGISAI 157
Query: 154 TLAGQWGRFDLDTRLLTCSI-LPDEN----GRSSKRALFLIGFVIPCVIIILCY 202
L G R D+D ++ CS+ PD++ K +F+ FVIP +III+CY
Sbjct: 158 VLGGTKVREDVD--VIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCY 209
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 203 AKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITV- 261
AK W + R +R + ++ + RN RIT++VLV+ F+ C+ PI +
Sbjct: 357 AKSRWY-NQTPNRAKRVITTFRTGTWDAYREKDRNLRRITRLVLVVVAVFVVCWTPIHIF 415
Query: 262 --VKTVDSEVHFPGLHVISYIFL----YLSACINPIIYVIMNKQYRVAYK 305
V+ + S H + SY F Y ++ +NPI+Y +++ ++ ++
Sbjct: 416 ILVEALGSTSHSTA-ALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFR 464
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/318 (20%), Positives = 131/318 (41%), Gaps = 32/318 (10%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + A+ + +++ V FI SL AD L V+PF KTW G F C
Sbjct: 200 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWT 259
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLA 156
I V S+ + +I ++RY I Y ++ +I + +S +
Sbjct: 260 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 319
Query: 157 GQWGRFDLDTRLLTCSILPDE------NGRSSKRALFLIGFVIPCVIIILCYAKIFWVVR 210
W R T + +E ++ A ++ F +P VI++ Y+++F +
Sbjct: 320 MHWYR---ATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAK 376
Query: 211 SSEKRLRRHTSKI------QSKKDQKELKAKR-------NDMRITKMVLVIFLSFLTCYL 257
+++ + + Q ++D + R + + K + +I +F C+L
Sbjct: 377 RQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWL 436
Query: 258 P---ITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNR 314
P + +V + + ++++ Y+++ NP+IY + +R+A++ +L ++
Sbjct: 437 PFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSS 495
Query: 315 L------LSSIRRSGTQS 326
L SS +G QS
Sbjct: 496 LKAYGNGYSSNGNTGEQS 513
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 124/279 (44%), Gaps = 26/279 (9%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + +LR K++ +I +L +AD LL +PF T W G LC V
Sbjct: 143 NCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFGNALCKTVI 201
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLA 156
I Y N+ S + ++++RY+ I H + + +AL+ + +P
Sbjct: 202 AIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPV-- 259
Query: 157 GQWGRFDLDTRLLTCSI-LP---DENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSS 212
G ++ + C + +P D G +FL F++P ++I +CY+ +
Sbjct: 260 AIMGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMI------ 313
Query: 213 EKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVDSEVHFP 272
+RLR ++ S +K+ RN RIT++VLV+ F+ C+ P+ V P
Sbjct: 314 -RRLR--GVRLLSGSREKD----RNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQP 366
Query: 273 GLHVISYIFL------YLSACINPIIYVIMNKQYRVAYK 305
I Y+++C+NPI+Y +++ ++ ++
Sbjct: 367 SSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFR 405
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 128/307 (41%), Gaps = 33/307 (10%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + A+ + +++ V FI SL AD L V+PF KTW G F C
Sbjct: 23 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWT 82
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLA 156
I V S+ + +I ++RY I Y ++ +I + +S +
Sbjct: 83 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 142
Query: 157 GQWGRFDLDTRLLTCSILPDE------NGRSSKRALFLIGFVIPCVIIILCYAKIFWVVR 210
W R T + +E ++ A ++ F +P VI++ Y+++F
Sbjct: 143 MHWYR---ATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVF---- 195
Query: 211 SSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLP---ITVVKTVDS 267
+ +R KI K KE KA K + +I +F C+LP + +V +
Sbjct: 196 ---QEAKRQLQKID-KFCLKEHKA-------LKTLGIIMGTFTLCWLPFFIVNIVHVIQD 244
Query: 268 EVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRLLSSIRRSGTQ-S 326
+ ++++ Y+++ NP+IY + +R+A++ +L + SS++ G S
Sbjct: 245 NLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRR----SSLKAYGNGYS 299
Query: 327 KDGKNNE 333
+G E
Sbjct: 300 SNGNTGE 306
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/320 (20%), Positives = 131/320 (40%), Gaps = 31/320 (9%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + A+ + +++ V FI SL AD L V+PF K W G F C
Sbjct: 52 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT 111
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLA 156
I V S+ + +I ++RY I Y ++ +I + +S +
Sbjct: 112 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 171
Query: 157 GQWGRFDLDTRLLTCSILPDE------NGRSSKRALFLIGFVIPCVIIILCYAKIFWVVR 210
W R T + +E ++ A ++ F +P VI++ Y+++F +
Sbjct: 172 MHWYR---ATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAK 228
Query: 211 SSEKRLRRHTSKI------QSKKDQKELKAKR-------NDMRITKMVLVIFLSFLTCYL 257
+++ + + Q ++D + R + + K + +I +F C+L
Sbjct: 229 RQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWL 288
Query: 258 P---ITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNR 314
P + +V + + ++++ Y+++ NP+IY + +R+A++ +L +
Sbjct: 289 PFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRR-- 345
Query: 315 LLSSIRRSGTQ-SKDGKNNE 333
SS++ G S +G E
Sbjct: 346 --SSLKAYGNGYSSNGNTGE 363
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/320 (20%), Positives = 131/320 (40%), Gaps = 31/320 (9%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + A+ + +++ V FI SL AD L V+PF K W G F C
Sbjct: 51 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT 110
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLA 156
I V S+ + +I ++RY I Y ++ +I + +S +
Sbjct: 111 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 170
Query: 157 GQWGRFDLDTRLLTCSILPDE------NGRSSKRALFLIGFVIPCVIIILCYAKIFWVVR 210
W R T + +E ++ A ++ F +P VI++ Y+++F +
Sbjct: 171 MHWYR---ATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAK 227
Query: 211 SSEKRLRRHTSKI------QSKKDQKELKAKR-------NDMRITKMVLVIFLSFLTCYL 257
+++ + + Q ++D + R + + K + +I +F C+L
Sbjct: 228 RQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWL 287
Query: 258 P---ITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNR 314
P + +V + + ++++ Y+++ NP+IY + +R+A++ +L +
Sbjct: 288 PFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRR-- 344
Query: 315 LLSSIRRSGTQ-SKDGKNNE 333
SS++ G S +G E
Sbjct: 345 --SSLKAYGNGYSSNGNTGE 362
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/320 (20%), Positives = 131/320 (40%), Gaps = 31/320 (9%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + A+ + +++ V FI SL AD L V+PF K W G F C
Sbjct: 28 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT 87
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLA 156
I V S+ + +I ++RY I Y ++ +I + +S +
Sbjct: 88 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 147
Query: 157 GQWGRFDLDTRLLTCSILPDE------NGRSSKRALFLIGFVIPCVIIILCYAKIFWVVR 210
W R T + +E ++ A ++ F +P VI++ Y+++F +
Sbjct: 148 MHWYR---ATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAK 204
Query: 211 SSEKRLRRHTSKI------QSKKDQKELKAKR-------NDMRITKMVLVIFLSFLTCYL 257
+++ + + Q ++D + R + + K + +I +F C+L
Sbjct: 205 RQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWL 264
Query: 258 P---ITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNR 314
P + +V + + ++++ Y+++ NP+IY + +R+A++ +L +
Sbjct: 265 PFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRR-- 321
Query: 315 LLSSIRRSGTQ-SKDGKNNE 333
SS++ G S +G E
Sbjct: 322 --SSLKAYGNGYSSNGNTGE 339
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 7/179 (3%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + ++R K++ +I +L +AD +PF + ++ +TW G+ LC V
Sbjct: 32 NVLVMFGIVRYTKLKTATNIYIFNLALADAL-ATSTLPFQSAKYLMETWPFGELLCKAVL 90
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFC-YALSFGMQIPTL 155
I Y N+ S+ + M++++RYI + H P +I C + L+ G+ +P +
Sbjct: 91 SIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPA-KAKLINICIWVLASGVGVPIM 149
Query: 156 AGQWGRFDLDTRLLTCSILPDEN---GRSSKRALFLIGFVIPCVIIILCYAKIFWVVRS 211
+ D ++ P + +K +FL FV+P +II +CY + +RS
Sbjct: 150 VMAVTQ-PRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRS 207
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 102/244 (41%), Gaps = 46/244 (18%)
Query: 85 WIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNT----IYKPVWIGCMI 140
WI G FLC VV ++ N + +A I+++RY+ I H T + K V +G
Sbjct: 75 WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLG--- 131
Query: 141 AFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENG--RSSKRAL-FLIGFVIPCVI 197
C+ LS + +P + ++ + +L ++ R R L GF++P +
Sbjct: 132 --CWGLSMNLSLPFFLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFV 189
Query: 198 IILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYL 257
++ CY + +R+ K + QK R +++ + L FL C+L
Sbjct: 190 MLFCYG---FTLRTLFK----------AHMGQKH--------RAMRVIFAVVLIFLLCWL 228
Query: 258 PITVVKTVDSEVHFPGLHV-------------ISYIFLYLSACINPIIYVIMNKQYRVAY 304
P +V D+ + + + I +L +C+NPIIY + + +R +
Sbjct: 229 PYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGF 288
Query: 305 KTVL 308
+L
Sbjct: 289 LKIL 292
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 117/283 (41%), Gaps = 38/283 (13%)
Query: 49 KIRNVAAAFIVSLCIADFFFCLLVIPFSTT-RFYFKTWIHG-KFLCTVVPFIQYSNVGVS 106
++NV F+VSL AD +L IPF+ T F HG F+ V + S++
Sbjct: 36 NLQNVTNYFVVSLAAADILVGVLAIPFAITISTGFCAACHGCLFIACFVLVLAQSSIFSL 95
Query: 107 LSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDT 166
L+ I I+RYI IA YN + +IA C+ LSF + + + G W
Sbjct: 96 LA----IAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTPMLG-WNNCGQPK 150
Query: 167 RLLTCSILPDENGRSSKRALF--------LIGF------VIPCVIIILCYAKIFWVVRSS 212
S G LF ++ F ++P ++++ Y +IF R
Sbjct: 151 EGKNHS---QGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFAAARRQ 207
Query: 213 EKRLRRHTSKIQSKKD--QKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKT----VD 266
K++ + + QKE+ A ++ I + F C+LP+ ++
Sbjct: 208 LKQMESQPLPGERARSTLQKEVHAAKSAAIIAGL-------FALCWLPLHIINCFTFFCP 260
Query: 267 SEVHFP-GLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVL 308
H P L ++ + + ++ +NP IY +++R ++ ++
Sbjct: 261 DCSHAPLWLMYLAIVLAHTNSVVNPFIYAYRIREFRQTFRKII 303
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 9/176 (5%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + A+ + +++ V FI SL AD L V+PF K W G F C
Sbjct: 59 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT 118
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLA 156
I V S+ + +I ++RY I Y ++ +I + +S +
Sbjct: 119 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 178
Query: 157 GQWGRFDLDTRLLTCSILPDE------NGRSSKRALFLIGFVIPCVIIILCYAKIF 206
W R T + +E ++ A ++ F +P VI++ Y+++F
Sbjct: 179 MHWYR---ATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVF 231
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 9/176 (5%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + A+ + +++ V FI SL AD L V+PF K W G F C
Sbjct: 58 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT 117
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLA 156
I V S+ + +I ++RY I Y ++ +I + +S +
Sbjct: 118 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 177
Query: 157 GQWGRFDLDTRLLTCSILPDE------NGRSSKRALFLIGFVIPCVIIILCYAKIF 206
W R T + +E ++ A ++ F +P VI++ Y+++F
Sbjct: 178 MHWYR---ATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVF 230
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 9/176 (5%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + A+ + +++ V FI SL AD L V+PF K W G F C
Sbjct: 59 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT 118
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLA 156
I V S+ + +I ++RY I Y ++ +I + +S +
Sbjct: 119 SIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 178
Query: 157 GQWGRFDLDTRLLTCSILPDE------NGRSSKRALFLIGFVIPCVIIILCYAKIF 206
W R T + +E ++ A ++ F +P VI++ Y+++F
Sbjct: 179 MHWYR---ATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVF 231
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 9/176 (5%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + A+ + +++ V FI SL AD L V+PF K W G F C
Sbjct: 27 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWT 86
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLA 156
I V S+ + +I ++RY I Y ++ +I + +S +
Sbjct: 87 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 146
Query: 157 GQWGRFDLDTRLLTCSILPDE------NGRSSKRALFLIGFVIPCVIIILCYAKIF 206
W R T + +E ++ A ++ F +P VI++ Y+++F
Sbjct: 147 MHWYR---ATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVF 199
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 117/301 (38%), Gaps = 50/301 (16%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTT-RFYFKTWIHGKFL--CT 93
N L A+ ++NV F+VSL AD +L IPF+ T F HG C
Sbjct: 24 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACF 83
Query: 94 VVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIP 153
V+ Q S + + I I+RYI I YN + +IA C+ LSF + +
Sbjct: 84 VLVLTQSS-----IFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLT 138
Query: 154 TLAGQWGRFDLDTRLLTCSILPDENGRSSKRAL---------------------FLIGFV 192
+ G W C P E + S+ F +
Sbjct: 139 PMLG-WN---------NCG-QPKEGKQHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVL 187
Query: 193 IPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSF 252
+P ++++ Y +IF R K++ Q ++ + ++ K + +I F
Sbjct: 188 VPLLLMLGVYLRIFLAARRQLKQMES-----QPLPGERARSTLQKEVHAAKSLAIIVGLF 242
Query: 253 LTCYLPITVVKT----VDSEVHFP-GLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTV 307
C+LP+ ++ H P L ++ + + ++ +NP IY +++R ++ +
Sbjct: 243 ALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKI 302
Query: 308 L 308
+
Sbjct: 303 I 303
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 7/171 (4%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + ++R K++ +I +L +AD +PF + + TW G LC +V
Sbjct: 35 NFLVMYVIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSVNYLMGTWPFGNILCKIVI 93
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTL- 155
I Y N+ S+ + ++++RYI + H P + + LS + +P +
Sbjct: 94 SIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMF 153
Query: 156 --AGQWGRFDLDTRL-LTCSILPDENGRSSKRALFLIGFVIPCVIIILCYA 203
++ + +D L + EN K +F+ F++P +II +CY
Sbjct: 154 MATTKYRQGSIDCTLTFSHPTWYWEN--LLKICVFIFAFIMPVLIITVCYG 202
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 203 AKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVV 262
AK W ++ + R T+ D E RN RIT+MVLV+ F+ C+ PI +
Sbjct: 345 AKSRWYNQTPNRAKRVITTFRTGTWDAYE--KDRNLRRITRMVLVVVAVFIVCWTPIHIY 402
Query: 263 KTVDSEVHFPG--LHVISYIFL----YLSACINPIIYVIMNKQYRVAYK 305
+ + + P +S+ F Y ++C+NP++Y +++ ++ ++
Sbjct: 403 VIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFR 451
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 14/184 (7%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFST-TRFYFKTWIHGKFLCTVV 95
N L +A+L+ ++ +VSL +AD LV+P+ W + C V
Sbjct: 56 NGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVF 115
Query: 96 PFIQYSNVGVSLSCIAMITINRY---IMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQI 152
+ S+ + I+I+RY +M H+Q + MI + L+F +
Sbjct: 116 VTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSC 175
Query: 153 PTLAGQWGRFDLDTRLLTCSIL-PDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRS 211
P L G F+ CSI PD SS ++ F +P + +L YA+I+ V++
Sbjct: 176 PLLFG----FNTTGDPTVCSISNPDFVIYSS-----VVSFYLPFGVTVLVYARIYVVLKQ 226
Query: 212 SEKR 215
++
Sbjct: 227 RRRK 230
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 238 DMRITKMVLVIFLSFLTCYLPITVVKTVDSEVHF----PGLHVISYIFLYLSACINPIIY 293
+ + T+MV ++ +F+ C+LP + +++ P L+ + Y+++ +NP+IY
Sbjct: 396 EKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIY 455
Query: 294 VIMNKQYRVAYKTVLMCEK 312
N ++R A+ +L C +
Sbjct: 456 TTFNIEFRKAFLKILSCGR 474
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/292 (20%), Positives = 113/292 (38%), Gaps = 32/292 (10%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTT-RFYFKTWIHGKFLCTVV 95
N L A+ ++NV F+VS AD +L IPF+ F HG C +
Sbjct: 24 NVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAISTGFCAACHG---CLFI 80
Query: 96 PFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTL 155
S+ + I I+RYI I YN + +IA C+ LSF + + +
Sbjct: 81 ACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPM 140
Query: 156 AGQWGRFDLDTRLLTCSILPDENGRSSKRALF--------LIGF------VIPCVIIILC 201
G W S G LF ++ F ++P ++++
Sbjct: 141 LG-WNNCGQPKEGKAHS---QGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGV 196
Query: 202 YAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITV 261
Y +IF R K++ Q ++ + ++ K + +I F C+LP+ +
Sbjct: 197 YLRIFLAARRQLKQMES-----QPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHI 251
Query: 262 VKTV----DSEVHFP-GLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVL 308
+ H P L ++ + + ++ +NP IY +++R ++ ++
Sbjct: 252 INCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII 303
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L ++ + K+R++ + + L +AD F ++ +PF W G FLC V
Sbjct: 66 NGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVD-AVANWYFGNFLCKAVH 123
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAH 123
I N+ S+ +A I+++RY+ I H
Sbjct: 124 VIYTVNLYSSVWILAFISLDRYLAIVH 150
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 243 KMVLVIFLSFLTCYLPITVVKTVDS----EVHFPGLHV---------ISYIFLYLSACIN 289
K +++ L+F C+LP + ++DS E+ G I+ + C+N
Sbjct: 413 KTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLN 472
Query: 290 PIIYVIMNKQYRVAYKTVL 308
PI+Y + +++ + + L
Sbjct: 473 PILYAFLGAKFKTSAQHAL 491
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L ++ + K+R++ + + L +AD F ++ +PF W G FLC V
Sbjct: 66 NGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVD-AVANWYFGNFLCKAVH 123
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAH 123
I N+ S+ +A I+++RY+ I H
Sbjct: 124 VIYTVNLYSSVWILAFISLDRYLAIVH 150
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 243 KMVLVIFLSFLTCYLPITVVKTVDS----EVHFPGLHV---------ISYIFLYLSACIN 289
K +++ L+F C+LP + ++DS E+ G I+ + C+N
Sbjct: 413 KTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLN 472
Query: 290 PIIYVIMNKQYRVAYKTVLMCEK 312
PI+Y + +++ + + L +
Sbjct: 473 PILYAFLGAKFKTSAQHALTSGR 495
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L ++ + K+R++ + + L +AD F ++ +PF W G FLC V
Sbjct: 66 NGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVD-AVANWYFGNFLCKAVH 123
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAH 123
I N+ S+ +A I+++RY+ I H
Sbjct: 124 VIYTVNLYSSVWILAFISLDRYLAIVH 150
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 243 KMVLVIFLSFLTCYLPITVVKTVDS----EVHFPGLHV---------ISYIFLYLSACIN 289
K +++ L+F C+LP + ++DS E+ G I+ + C+N
Sbjct: 410 KPTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLN 469
Query: 290 PIIYVIMNKQYRVAYKTVLMCEK 312
PI+Y + +++ + + L +
Sbjct: 470 PILYAFLGAKFKTSAQHALTSGR 492
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 14/182 (7%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L + A+ K+ V +IVSL +AD +V+P + W G+ LC
Sbjct: 26 NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWL 85
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLA 156
+ Y S+ + ++ I+RY + Y I + LSF IP L
Sbjct: 86 SMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPILG 145
Query: 157 GQWGRFDLDTRLLTCSILPDENGRSS-------KRALFLIGFVIPCVIIILCYAKIFWVV 209
W F T S+ ++ + K +I F +P ++++ YAKI+ V
Sbjct: 146 --WNHFMQQT-----SVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAV 198
Query: 210 RS 211
R
Sbjct: 199 RQ 200
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 238 DMRITKMVLVIFLSFLTCYLP-------ITVVKTVDSEVHFPGLHVISYIFLYLSACINP 290
+ + K + I +F+ C++P I K +E LH+ + Y+++ +NP
Sbjct: 368 ERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNE----HLHMFTIWLGYINSTLNP 423
Query: 291 IIYVIMNKQYRVAYKTVL 308
+IY + N+ ++ +K +L
Sbjct: 424 LIYPLCNENFKKTFKRIL 441
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L +VA +++ V F++SL AD ++ + TT W G C +
Sbjct: 30 NILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWL 89
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTL 155
I Y S+ + +I+ +RY I Y G MI + +SF + P +
Sbjct: 90 SIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAI 148
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 203 AKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVV 262
AK W ++ + R T+ D +K K+ ++ I L+F+ + P ++
Sbjct: 338 AKSRWYNQTPNRAKRVITTFRTGTWDAYLIKEKKAAQTLS----AILLAFIITWTPYNIM 393
Query: 263 KTVDS--EVHFPGLHV-ISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCE 311
V++ + P + + Y Y+++ +NP+ Y + NK +R +KT+L+C+
Sbjct: 394 VLVNTFCDSCIPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKTLLLCQ 445
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTT-RFYFKTWIHGKFL--CT 93
N L A+ ++NV F+VSL AD +L IPF+ T F HG C
Sbjct: 39 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACF 98
Query: 94 VVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIP 153
V+ Q S + + I I+RYI I YN + +IA C+ LSF + +
Sbjct: 99 VLVLTQSS-----IFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLT 153
Query: 154 TLAG 157
+ G
Sbjct: 154 PMLG 157
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTT-RFYFKTWIHGKFL--CT 93
N L A+ ++NV F+VSL AD +L IPF+ T F HG C
Sbjct: 49 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACF 108
Query: 94 VVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIP 153
V+ Q S + + I I+RYI I YN + +IA C+ LSF + +
Sbjct: 109 VLVLTQSS-----IFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLT 163
Query: 154 TLAG 157
+ G
Sbjct: 164 PMLG 167
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 238 DMRITKMVLVIFLSFLTCYLPITVVKTVDSEVH--FPG-LHVISYIFLYLSACINPIIYV 294
+ ++T+ +L I L+F+ + P V+ +++ P + I Y Y+++ INP Y
Sbjct: 383 EKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYA 442
Query: 295 IMNKQYRVAYKTVLMCE 311
+ N ++ +K +LMC
Sbjct: 443 LCNATFKKTFKHLLMCH 459
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 47/119 (39%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVP 96
N L +V++ ++ V F+ SL AD + + T W G +C +
Sbjct: 41 NILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWL 100
Query: 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTL 155
+ Y S+ + +I+ +RY + Y G MIA + LSF + P +
Sbjct: 101 ALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAI 159
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 37 NSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKT-WIHGKFLCTVV 95
N + +V + K++ A +++ L AD F + V+PF + ++ + W G LC V
Sbjct: 38 NIMAIVVFILKMKVKKPAVVYMLHLATADVLF-VSVLPFKISYYFSGSDWQFGSELCRFV 96
Query: 96 PFIQYSNVGVSLSCIAMITINRYIMIAH 123
Y N+ S+ + +I+I+R++ + +
Sbjct: 97 TAAFYCNMYASILLMTVISIDRFLAVVY 124
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/277 (19%), Positives = 116/277 (41%), Gaps = 31/277 (11%)
Query: 49 KIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLS 108
++R V F+V+L A+ + T W +G F C F + V S+
Sbjct: 62 RMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIY 121
Query: 109 CIAMITINRYIMIAHH---QMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLD 165
+ + +RY+ I H ++ T K V I + L+ + P G + +
Sbjct: 122 SMTAVAFDRYMAIIHPLQPRLSATATKVV-----ICVIWVLALLLAFPQ--GYYSTTETM 174
Query: 166 TRLLTCSILPDENGRSSKRALFLIG-----FVIPCVIIILCYAKIFWVVRSSEKRLRRHT 220
+ C I E+ ++ I + +P ++I Y + + +SE
Sbjct: 175 PSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASE------I 228
Query: 221 SKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITV---VKTVDSEVH---FPGL 274
S + +++ AKR +++ +V+ +F C+LP + + ++ +++ F
Sbjct: 229 PGDSSDRYHEQVSAKRKVVKMMIVVVC---TFAICWLPFHIFFLLPYINPDLYLKKFIQQ 285
Query: 275 HVISYIFLYLSACI-NPIIYVIMNKQYRVAYKTVLMC 310
++ ++L +S+ + NPIIY +N ++R+ +K C
Sbjct: 286 VYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRC 322
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 203 AKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVV 262
AK W ++ + R T+ D ++ N + + K V+++ F+ C+ P+ ++
Sbjct: 382 AKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSEN-VALLKTVIIVLSVFIACWAPLFIL 440
Query: 263 KTVD-------SEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAY 304
+D ++ F + + + L++ NPIIY + NK+ R A+
Sbjct: 441 LLLDVGCKVKTCDILFRAEYFL--VLAVLNSGTNPIIYTLTNKEMRRAF 487
>pdb|1FDF|A Chain A, Helix 7 Bovine Rhodopsin
Length = 25
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 281 FLYLSACINPIIYVIMNKQYR 301
F SA NP+IY++MNKQ+R
Sbjct: 4 FAKTSAVYNPVIYIMMNKQFR 24
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 18/93 (19%)
Query: 231 ELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTV-----DSE--------VHFPGLHVI 277
++A R+ + + + V++ +F+ C+LP V + + D + H+ +++
Sbjct: 400 SVQALRHGVLVARAVVI---AFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHY--FYML 454
Query: 278 SYIFLYLSACINPIIYVIMNKQYRVAYKTVLMC 310
+ Y S+ INPI+Y +++ +R + + L C
Sbjct: 455 TNALAYASSAINPILYNLVSANFRQVFLSTLAC 487
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.141 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,580,217
Number of Sequences: 62578
Number of extensions: 300864
Number of successful extensions: 888
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 64
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.6 bits)