Query psy17917
Match_columns 342
No_of_seqs 282 out of 1343
Neff 11.2
Searched_HMMs 46136
Date Fri Aug 16 17:25:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 1.8E-45 3.8E-50 299.0 15.6 289 12-311 28-336 (423)
2 PHA03234 DNA packaging protein 100.0 3.7E-43 8E-48 297.4 24.9 267 17-309 30-315 (338)
3 KOG4220|consensus 100.0 1.4E-44 3.1E-49 293.1 9.6 295 20-316 31-493 (503)
4 PHA02834 chemokine receptor-li 100.0 3E-41 6.6E-46 286.1 20.6 271 16-313 25-312 (323)
5 PHA03235 DNA packaging protein 100.0 9.6E-40 2.1E-44 282.4 24.7 269 18-310 31-323 (409)
6 PHA02638 CC chemokine receptor 100.0 3.4E-39 7.3E-44 280.4 23.3 271 18-312 97-399 (417)
7 PHA03087 G protein-coupled che 100.0 3E-37 6.5E-42 264.4 23.2 273 18-314 39-327 (335)
8 PF00001 7tm_1: 7 transmembran 100.0 2.2E-35 4.8E-40 244.1 17.9 251 36-293 1-257 (257)
9 KOG2087|consensus 99.9 1.4E-27 3E-32 192.9 4.7 268 21-310 26-306 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.9 3.4E-25 7.4E-30 181.0 12.5 251 31-308 2-257 (257)
11 PF10328 7TM_GPCR_Srx: Serpent 99.9 6.4E-22 1.4E-26 164.2 18.8 269 29-307 3-272 (274)
12 PF10324 7TM_GPCR_Srw: Serpent 99.9 9.2E-22 2E-26 167.4 16.7 272 28-311 5-318 (318)
13 PF05296 TAS2R: Mammalian tast 99.9 8.7E-20 1.9E-24 152.2 24.9 289 17-312 4-303 (303)
14 PF05462 Dicty_CAR: Slime mold 99.8 6.3E-18 1.4E-22 139.2 24.3 263 20-312 7-272 (303)
15 PF10323 7TM_GPCR_Srv: Serpent 99.8 1.1E-18 2.4E-23 144.5 16.3 267 30-310 5-283 (283)
16 PF10321 7TM_GPCR_Srt: Serpent 99.7 1.5E-16 3.2E-21 131.9 18.3 276 16-314 29-311 (313)
17 PF03402 V1R: Vomeronasal orga 99.4 6.5E-13 1.4E-17 106.7 9.2 246 50-304 7-263 (265)
18 PF10317 7TM_GPCR_Srd: Serpent 99.4 3E-11 6.5E-16 101.2 18.7 270 24-306 3-292 (292)
19 KOG4193|consensus 99.3 5.2E-10 1.1E-14 100.6 21.3 258 31-319 331-590 (610)
20 PF11710 Git3: G protein-coupl 99.3 5.8E-11 1.2E-15 92.7 11.8 161 49-215 31-200 (201)
21 PF10292 7TM_GPCR_Srab: Serpen 99.2 3.5E-08 7.6E-13 83.9 23.7 274 20-308 17-304 (324)
22 PF02118 Srg: Srg family chemo 99.1 1.9E-09 4.2E-14 89.9 15.0 256 27-303 5-274 (275)
23 PF10326 7TM_GPCR_Str: Serpent 99.1 1.6E-10 3.4E-15 98.0 6.0 265 26-305 5-307 (307)
24 PF10327 7TM_GPCR_Sri: Serpent 99.0 4.6E-08 1E-12 82.1 17.9 267 20-303 9-302 (303)
25 PF02101 Ocular_alb: Ocular al 99.0 1.9E-07 4.2E-12 77.3 20.0 218 24-264 31-265 (405)
26 PF10319 7TM_GPCR_Srj: Serpent 98.9 5.2E-07 1.1E-11 73.8 18.0 269 25-303 10-309 (310)
27 PF04789 DUF621: Protein of un 98.8 2.5E-06 5.4E-11 67.6 19.0 258 26-306 19-294 (305)
28 PF10316 7TM_GPCR_Srbc: Serpen 98.8 1.2E-06 2.6E-11 71.7 17.4 124 20-143 6-132 (273)
29 PF10318 7TM_GPCR_Srh: Serpent 98.7 1.9E-06 4.1E-11 73.0 18.7 275 21-310 5-302 (302)
30 KOG4564|consensus 98.7 3.8E-07 8.1E-12 79.1 12.3 256 25-310 150-419 (473)
31 PF02117 7TM_GPCR_Sra: Serpent 98.6 3E-05 6.6E-10 65.9 22.9 230 16-262 17-255 (328)
32 PF00002 7tm_2: 7 transmembran 98.6 1.2E-08 2.7E-13 83.4 1.9 128 25-157 6-133 (242)
33 PF03125 Sre: C. elegans Sre G 98.6 3.7E-05 8E-10 66.7 22.7 269 18-310 25-321 (365)
34 PF10322 7TM_GPCR_Sru: Serpent 97.7 0.00084 1.8E-08 56.1 12.1 156 90-255 101-259 (307)
35 PF01534 Frizzled: Frizzled/Sm 97.7 0.0094 2E-07 50.5 18.4 158 16-177 5-175 (328)
36 PF02076 STE3: Pheromone A rec 97.6 0.009 1.9E-07 49.6 16.2 211 33-265 4-220 (283)
37 PF03383 Serpentine_r_xa: Caen 97.5 7.2E-05 1.6E-09 54.7 2.1 102 56-157 5-109 (153)
38 PF11970 Git3_C: G protein-cou 97.0 0.00093 2E-08 42.9 3.4 63 239-301 8-75 (76)
39 PF02175 7TM_GPCR_Srb: Serpent 96.0 0.61 1.3E-05 37.1 15.9 48 85-132 78-125 (236)
40 KOG4289|consensus 95.6 0.25 5.5E-06 49.0 12.2 176 88-305 2222-2399(2531)
41 PF06681 DUF1182: Protein of u 95.3 0.43 9.3E-06 36.9 10.4 97 25-126 46-151 (226)
42 PF10669 Phage_Gp23: Protein g 75.5 12 0.00027 24.8 5.2 22 189-210 21-42 (121)
43 PF00003 7tm_3: 7 transmembran 63.5 29 0.00064 28.0 6.5 34 87-121 51-84 (238)
44 KOG1056|consensus 61.7 1.3E+02 0.0028 29.8 10.8 43 21-63 560-609 (878)
45 PF03125 Sre: C. elegans Sre G 61.6 1.1E+02 0.0024 26.8 12.0 47 267-313 274-320 (365)
46 PF10325 7TM_GPCR_Srz: Serpent 59.8 99 0.0022 25.5 11.2 27 99-125 89-115 (267)
47 PF01102 Glycophorin_A: Glycop 51.9 22 0.00048 25.4 3.3 25 23-49 69-93 (122)
48 PF15086 UPF0542: Uncharacteri 40.7 95 0.0021 19.7 5.1 31 184-214 22-53 (74)
49 COG1862 YajC Preprotein transl 39.4 29 0.00063 23.6 2.2 26 193-218 14-39 (97)
50 TIGR02976 phageshock_pspB phag 34.9 99 0.0021 19.9 4.0 26 190-215 5-30 (75)
51 PF09882 DUF2109: Predicted me 33.8 97 0.0021 19.9 3.7 46 30-75 4-49 (78)
52 PF09889 DUF2116: Uncharacteri 33.5 84 0.0018 19.1 3.3 17 240-256 37-53 (59)
53 PF04238 DUF420: Protein of un 31.7 2.1E+02 0.0045 20.9 6.5 24 239-262 35-58 (133)
54 PF06796 NapE: Periplasmic nit 28.4 1.4E+02 0.003 17.9 4.7 21 23-43 26-46 (56)
55 PF11446 DUF2897: Protein of u 27.4 78 0.0017 18.9 2.4 22 25-46 7-28 (55)
56 PF02699 YajC: Preprotein tran 26.8 1.2E+02 0.0025 19.9 3.5 21 196-216 10-30 (82)
57 PRK09458 pspB phage shock prot 25.8 1.1E+02 0.0024 19.6 3.0 26 190-215 5-30 (75)
58 KOG4220|consensus 24.5 4.9E+02 0.011 23.5 7.5 75 234-308 140-228 (503)
59 PF10192 GpcrRhopsn4: Rhodopsi 24.2 4.1E+02 0.0088 21.9 17.4 31 34-64 43-73 (257)
60 PF14362 DUF4407: Domain of un 24.1 4.4E+02 0.0096 22.3 7.9 21 104-124 51-71 (301)
61 PF15102 TMEM154: TMEM154 prot 23.1 19 0.00042 26.4 -0.8 19 188-206 58-76 (146)
62 PF04505 Dispanin: Interferon- 22.4 2.4E+02 0.0051 18.5 5.0 20 185-204 23-42 (82)
63 PRK06531 yajC preprotein trans 22.4 65 0.0014 22.7 1.7 6 194-199 8-13 (113)
64 PHA03234 DNA packaging protein 22.2 1.1E+02 0.0025 26.4 3.6 34 282-315 292-325 (338)
65 KOG2575|consensus 21.8 97 0.0021 27.4 2.9 25 238-262 254-278 (510)
66 KOG4349|consensus 21.7 3.1E+02 0.0067 19.6 7.9 20 84-103 112-131 (143)
67 PF02532 PsbI: Photosystem II 20.8 1.5E+02 0.0033 15.7 2.7 15 23-37 12-26 (36)
68 PF14126 DUF4293: Domain of un 20.3 3.8E+02 0.0081 20.0 11.0 51 252-304 90-140 (149)
69 TIGR00739 yajC preprotein tran 20.2 86 0.0019 20.7 1.9 19 198-216 13-31 (84)
No 1
>KOG4219|consensus
Probab=100.00 E-value=1.8e-45 Score=298.97 Aligned_cols=289 Identities=21% Similarity=0.377 Sum_probs=237.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccc
Q psy17917 12 LALPDVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFL 91 (342)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (342)
...+.....+.++++.++.+++++||.++++++..+|++|+.+|++++|||+||++.+++..++.....+..+|.+|...
T Consensus 28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~ 107 (423)
T KOG4219|consen 28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFY 107 (423)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccce
Confidence 34555677789999999999999999999999999999999999999999999999999999998888888999999999
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccC---CCc
Q psy17917 92 CTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLD---TRL 168 (342)
Q Consensus 92 C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~---~~~ 168 (342)
|++..++......+|+++++++|+|||.||.+|++.+ .+++...++++++|+.+++++.|..+.......+. ...
T Consensus 108 C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~ 185 (423)
T KOG4219|consen 108 CRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESR 185 (423)
T ss_pred eeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcce
Confidence 9999999999999999999999999999999998754 68888999999999999999999887522111111 112
Q ss_pred cccc---cCC--C-CC----CchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhcc
Q psy17917 169 LTCS---ILP--D-EN----GRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRND 238 (342)
Q Consensus 169 ~~C~---~~~--~-~~----~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (342)
..|. .+. . +. .+.|.....++.+++|++++...|..|.+.+|..+.... .+.++.++.+.+
T Consensus 186 ~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd---------~~d~~~~~~kak 256 (423)
T KOG4219|consen 186 VVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGD---------QQDRKHEQLKAK 256 (423)
T ss_pred EEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccc---------hhchhhHHHHHH
Confidence 2332 222 1 11 122667788899999999999999999999997642111 111233445556
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHhccCCC-------CCchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhhh
Q psy17917 239 MRITKMVLVIFLSFLTCYLPITVVKTVDSEV-------HFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCE 311 (342)
Q Consensus 239 ~~~~~~~~~~~~~f~~~~~P~~i~~~~~~~~-------~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~~ 311 (342)
+|+.|+++++++.|.+||+|+.+..++.... ....++....++++.|++.||+||++.|++||.++++.++|+
T Consensus 257 ~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~c 336 (423)
T KOG4219|consen 257 KKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWC 336 (423)
T ss_pred HHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhhee
Confidence 6899999999999999999999988875321 123477788899999999999999999999999999999876
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=3.7e-43 Score=297.40 Aligned_cols=267 Identities=16% Similarity=0.220 Sum_probs=200.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhhhhhh--ccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccchhh
Q psy17917 17 VTLKITAVCTVIIAVVGVVGNSLTVVAL--LRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTV 94 (342)
Q Consensus 17 ~~~~~~~~~~~~~~~~g~~~N~~vl~~i--~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 94 (342)
..+.+...++.+++++|++||+++++++ .+++++|+++|++++|||++|++.++ .+|...... ..+|.+|+..|++
T Consensus 30 ~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~-~~~w~fG~~lCk~ 107 (338)
T PHA03234 30 KAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNR-EALFNFNQAFCQC 107 (338)
T ss_pred HHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hCCccCchhHHHH
Confidence 4566788999999999999999999855 45566689999999999999999975 555544432 4579999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCccccccC
Q psy17917 95 VPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSIL 174 (342)
Q Consensus 95 ~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 174 (342)
..++......+|++++++||+|||+||++|.+++. ++++....++..|+.+++.++|.+.. ......+.....|...
T Consensus 108 ~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~-~~~~~~~~~~~~C~~~ 184 (338)
T PHA03234 108 VLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALF-VKTEGKKGNYGKCNIH 184 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHe-eeeeecCCCCCcCccc
Confidence 99999999999999999999999999999987543 23334445666799999999998754 2222222222468665
Q ss_pred CCCCCc--hhHH---HHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHH
Q psy17917 175 PDENGR--SSKR---ALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIF 249 (342)
Q Consensus 175 ~~~~~~--~~~~---~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (342)
++.... .+.. ....+++++|+++++++|..|.+.+++.+ .++++|+++++++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~---------------------~~~~~k~~k~i~~vv 243 (338)
T PHA03234 185 ISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT---------------------EKKHKKTLFFIRILI 243 (338)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------------hhhhhhhhhHHHHHH
Confidence 432211 1111 12233568999999999999998886521 012348899999999
Q ss_pred HHHHHhhhhHHHHHhccC--------CCCC----chHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHh
Q psy17917 250 LSFLTCYLPITVVKTVDS--------EVHF----PGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLM 309 (342)
Q Consensus 250 ~~f~~~~~P~~i~~~~~~--------~~~~----~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~ 309 (342)
++|++||+|+.+..+... .... .....+...++++||++||+||.+.+++||+++++.++
T Consensus 244 ~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~ 315 (338)
T PHA03234 244 LSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQ 315 (338)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHH
Confidence 999999999998765321 1111 12356777899999999999999999999999887764
No 3
>KOG4220|consensus
Probab=100.00 E-value=1.4e-44 Score=293.09 Aligned_cols=295 Identities=21% Similarity=0.367 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccchhhhhhhh
Q psy17917 20 KITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQ 99 (342)
Q Consensus 20 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 99 (342)
.+.+++...+.++.++||++|++.+.-++++++..|+|+++||+||++.|.+.+|....+.+.+.|+.|...|.++..+.
T Consensus 31 v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalD 110 (503)
T KOG4220|consen 31 VFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALD 110 (503)
T ss_pred EeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHH
Confidence 35667778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCcccc--CCCccccccCCCC
Q psy17917 100 YSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDL--DTRLLTCSILPDE 177 (342)
Q Consensus 100 ~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~ 177 (342)
++...+|++.+.+|++|||+.|.+|+.|+..+|.+++..+|++.|++++++..|.++. |..... ......|....-+
T Consensus 111 YvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~-WqyivGkrTv~~~eC~iQFls 189 (503)
T KOG4220|consen 111 YVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILF-WQYIVGKRTVPDGECYIQFLS 189 (503)
T ss_pred HHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHh-hHhheeeeecCCCceEEEeec
Confidence 9999999999999999999999999999999999999999999999999999988775 443332 2244567665444
Q ss_pred CCchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccch---------------------------------
Q psy17917 178 NGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQ--------------------------------- 224 (342)
Q Consensus 178 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~--------------------------------- 224 (342)
......-..++.|.+|..+|.++|.+|++..+++.+.....+....
T Consensus 190 -np~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~~~~~ 268 (503)
T KOG4220|consen 190 -NPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGKREPL 268 (503)
T ss_pred -CceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCCccccccccC
Confidence 3344455677889999999999999999999998876543222110
Q ss_pred --------------------------------------------------------------------------------
Q psy17917 225 -------------------------------------------------------------------------------- 224 (342)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (342)
T Consensus 269 ~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~~~~~ 348 (503)
T KOG4220|consen 269 TNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIPTDQM 348 (503)
T ss_pred CCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCccccccccccccccC
Confidence
Q ss_pred ------------------------------h--------------------hhhHHHHHhhhccchhHHHHHHHHHHHHH
Q psy17917 225 ------------------------------S--------------------KKDQKELKAKRNDMRITKMVLVIFLSFLT 254 (342)
Q Consensus 225 ------------------------------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 254 (342)
. +.+++++....+|+|+++++..+...|++
T Consensus 349 ~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILlAFIi 428 (503)
T KOG4220|consen 349 LPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILLAFIL 428 (503)
T ss_pred CCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 0 00000111125689999999999999999
Q ss_pred hhhhHHHHHhccCC---CCCchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhhhhhhhh
Q psy17917 255 CYLPITVVKTVDSE---VHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRLL 316 (342)
Q Consensus 255 ~~~P~~i~~~~~~~---~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~~~~~~~ 316 (342)
+|.||.|..+.... +....+..+..++.++||.+||+.|.+.|+.||+.+++++.|+.++..
T Consensus 429 TWtPYNImVlv~tFC~~CiP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr~~~~~ 493 (503)
T KOG4220|consen 429 TWTPYNIMVLVNTFCKNCIPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCRWKKRR 493 (503)
T ss_pred HcccceeeeehHhhcccccchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheeeecccc
Confidence 99999998877643 445678899999999999999999999999999999999988766543
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=3e-41 Score=286.09 Aligned_cols=271 Identities=20% Similarity=0.434 Sum_probs=205.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccchhhh
Q psy17917 16 DVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVV 95 (342)
Q Consensus 16 ~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 95 (342)
+....+..+++.+++++|++||+++++++.++++ +++.|++++|||++|++. ...+|..+.... ++|.+|+..|++.
T Consensus 25 ~~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w~~g~~~C~~~ 101 (323)
T PHA02834 25 SDVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEWIFGEFMCKLV 101 (323)
T ss_pred cchhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCcCCcchHHHhH
Confidence 3455677899999999999999999998887655 457899999999999986 567887665443 4799999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCccccccCC
Q psy17917 96 PFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILP 175 (342)
Q Consensus 96 ~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 175 (342)
.++...+..+|++++++||+|||.+|++|++++. .+.++....++.+|+.+++.++|+... +.. ........|....
T Consensus 102 ~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~-~~~-~~~~~~~~C~~~~ 178 (323)
T PHA02834 102 LGVYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVL-YYV-DNTDNLKQCIFND 178 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHH-HHh-ccCCCceEEeccC
Confidence 9998888889999999999999999999987654 345666778889999999999988764 211 1122334576433
Q ss_pred CCCCchhH----HHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHH
Q psy17917 176 DENGRSSK----RALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLS 251 (342)
Q Consensus 176 ~~~~~~~~----~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (342)
........ ....+..+++|+++++.+|.+|.+.++++++ ++++|..|+++++++.
T Consensus 179 ~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~---------------------~~~~k~~k~~~~vv~~ 237 (323)
T PHA02834 179 YHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN---------------------KNKTRSIKIILTVVTF 237 (323)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------------cccceEEeehhHHHHH
Confidence 22221111 1223667899999999999999988876421 1234778899999999
Q ss_pred HHHhhhhHHHHHhccCC----C-C-----Cch---HHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhhhhh
Q psy17917 252 FLTCYLPITVVKTVDSE----V-H-----FPG---LHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKN 313 (342)
Q Consensus 252 f~~~~~P~~i~~~~~~~----~-~-----~~~---~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~~~~ 313 (342)
|++||+|+.+..+.... . . .+. ...+...++++|+++||+||.+.+++||+++++++|+.++
T Consensus 238 F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~~~~ 312 (323)
T PHA02834 238 TVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCRTNN 312 (323)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHhhhh
Confidence 99999999887654211 0 0 011 2346678999999999999999999999999998876443
No 5
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=9.6e-40 Score=282.42 Aligned_cols=269 Identities=17% Similarity=0.241 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhhcc-CCcc-ccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccchhhh
Q psy17917 18 TLKITAVCTVIIAVVGVVGNSLTVVALLR-CPKI-RNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVV 95 (342)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~-~~~~-~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 95 (342)
.+.+..+++.+++++|++||+++++++.+ ++++ ++..++|++|||++|++. ++.+|+.+... ...|..++..|++.
T Consensus 31 ~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck~~ 108 (409)
T PHA03235 31 ARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCKFA 108 (409)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeehhH
Confidence 55688899999999999999999987543 3332 356789999999999987 56777665431 12233456899999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCC----cccc-CCCccc
Q psy17917 96 PFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWG----RFDL-DTRLLT 170 (342)
Q Consensus 96 ~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~----~~~~-~~~~~~ 170 (342)
.++...+..+|++++++||+|||++|++|.+++. .+++++...++++|+.+++.++|.....+. .... ......
T Consensus 109 ~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
T PHA03235 109 SLLYYASCTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYET 187 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcce
Confidence 9999999999999999999999999999975544 467788888999999999999986543111 1111 123446
Q ss_pred cccCCCCCCc-----hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHH
Q psy17917 171 CSILPDENGR-----SSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMV 245 (342)
Q Consensus 171 C~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
|......+.. .+.....++.+++|+++++++|.+|++.++++.++ +++|..+++
T Consensus 188 C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~---------------------~~~k~~~~v 246 (409)
T PHA03235 188 CVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYK---------------------KRSRTLTFV 246 (409)
T ss_pred eeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------------------cchhhhhhH
Confidence 7554332211 12334456678999999999999999988764221 123667888
Q ss_pred HHHHHHHHHhhhhHHHHHhccCC--------CC----CchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhh
Q psy17917 246 LVIFLSFLTCYLPITVVKTVDSE--------VH----FPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMC 310 (342)
Q Consensus 246 ~~~~~~f~~~~~P~~i~~~~~~~--------~~----~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~ 310 (342)
+++++.|++||+|+.+..++... .. ......+...+.++|+++||+||.+.+++||+++++.+++
T Consensus 247 ~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~ 323 (409)
T PHA03235 247 CILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRG 323 (409)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhh
Confidence 88899999999999987665311 00 1134567788999999999999999999999999988853
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=280.38 Aligned_cols=271 Identities=21% Similarity=0.421 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccchhhhhh
Q psy17917 18 TLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPF 97 (342)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 97 (342)
...+..+++.+++++|++||+++++++.+ |++|++.+++++|||++|++.. ..+|+.+... .++|.+++..|++..+
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~-l~lPf~i~~~-~~~W~fg~~~Ck~~~~ 173 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFV-IDFPFIIYNE-FDQWIFGDFMCKVISA 173 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHH-HHHHHHHHHH-hccccccccchhhHHH
Confidence 44577788999999999999999987655 7778999999999999999874 5788776554 4689999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCc------cccC--CCcc
Q psy17917 98 IQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGR------FDLD--TRLL 169 (342)
Q Consensus 98 ~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~------~~~~--~~~~ 169 (342)
+...+..++++.++++++|||+||++|.++++..+++.....++.+|+.+++.++|++...... ...+ ....
T Consensus 174 l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~ 253 (417)
T PHA02638 174 SYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNY 253 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCC
Confidence 9999999999999999999999999999888877878878889999999999999987642111 0111 1234
Q ss_pred ccccCCCCCC--ch-----hHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhH
Q psy17917 170 TCSILPDENG--RS-----SKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRIT 242 (342)
Q Consensus 170 ~C~~~~~~~~--~~-----~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
.|....+... .. +.....++++++|++++++||.+|++.+++.++ ++++|.+
T Consensus 254 ~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~---------------------~~k~k~~ 312 (417)
T PHA02638 254 QCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK---------------------SKKTKSI 312 (417)
T ss_pred eeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------------cccchhh
Confidence 6754332221 11 112224567889999999999999998865321 1233678
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhccCC--------------CCC---chHHHHHHHHHHhhhchhhhHHhhcchhHHHHHH
Q psy17917 243 KMVLVIFLSFLTCYLPITVVKTVDSE--------------VHF---PGLHVISYIFLYLSACINPIIYVIMNKQYRVAYK 305 (342)
Q Consensus 243 ~~~~~~~~~f~~~~~P~~i~~~~~~~--------------~~~---~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~ 305 (342)
+++++++++|++||+|+.+..++... ... .....+...++++|+++||++|++.+++||++++
T Consensus 313 rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~ 392 (417)
T PHA02638 313 IIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLL 392 (417)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHH
Confidence 99999999999999999987664311 001 1234466788999999999999999999999999
Q ss_pred HHHhhhh
Q psy17917 306 TVLMCEK 312 (342)
Q Consensus 306 ~~~~~~~ 312 (342)
+++++..
T Consensus 393 ~~~~~~~ 399 (417)
T PHA02638 393 MIFRNIF 399 (417)
T ss_pred HHHHHhc
Confidence 9885543
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=3e-37 Score=264.40 Aligned_cols=273 Identities=24% Similarity=0.426 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccchhhhhh
Q psy17917 18 TLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPF 97 (342)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 97 (342)
...+...++.+++++|++||+++++++.++ ++|++.+.++.|||++|++.++ ..|.........+|..++..|++..+
T Consensus 39 ~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~ 116 (335)
T PHA03087 39 NSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSG 116 (335)
T ss_pred hhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHHHH
Confidence 555788889999999999999999998888 8899999999999999998765 45655555556678889999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCccccccCCCC
Q psy17917 98 IQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDE 177 (342)
Q Consensus 98 ~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 177 (342)
+......+|.++++++++|||++|++|++|+...++++....++++|+.+++.++|+.... . ...+.....|....+.
T Consensus 117 ~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~-~-~~~~~~~~~C~~~~~~ 194 (335)
T PHA03087 117 LYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVY-T-TKKDHETLICCMFYNN 194 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhhee-e-eeccCCCceEEecCCC
Confidence 9999999999999999999999999999999988999999999999999999998887652 2 2222334456555443
Q ss_pred CCchhHH----HHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHHHH
Q psy17917 178 NGRSSKR----ALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFL 253 (342)
Q Consensus 178 ~~~~~~~----~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 253 (342)
....+.. ....+.+++|.++++++|.++.+.++++.+ .++++|..|++.++++.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~--------------------~~~~~k~~k~l~~iv~~f~ 254 (335)
T PHA03087 195 KTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK--------------------SKKNKKAIKLVLIIVILFV 254 (335)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------------chhcchHHHhHHHHHHHHH
Confidence 3222211 224566889999999999999887765421 1233478999999999999
Q ss_pred HhhhhHHHHHhcc------CCC--C----CchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhhhhhh
Q psy17917 254 TCYLPITVVKTVD------SEV--H----FPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNR 314 (342)
Q Consensus 254 ~~~~P~~i~~~~~------~~~--~----~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~~~~~ 314 (342)
+||.|+.+..+.. ... . .+....+...+..+|+++||+||++++++||+++++.++...++
T Consensus 255 i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~~~ 327 (335)
T PHA03087 255 IFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFTS 327 (335)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHhhc
Confidence 9999998865432 111 1 01233566778899999999999999999999999988654433
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=100.00 E-value=2.2e-35 Score=244.08 Aligned_cols=251 Identities=29% Similarity=0.581 Sum_probs=210.3
Q ss_pred hhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccchhhhhhhhhhhhHHHHHHHHHHHH
Q psy17917 36 GNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITI 115 (342)
Q Consensus 36 ~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~iai 115 (342)
||.+++.++.++|++|++.+++++|||++|++.++...|........++|..++..|++..++..++..++.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999998888888877777789999999999999999999999999999999
Q ss_pred HhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCccccccCCCCC-CchhHHHHHHHhhhhh
Q psy17917 116 NRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDEN-GRSSKRALFLIGFVIP 194 (342)
Q Consensus 116 dRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~-~~~~~~~~~~~~~~~p 194 (342)
|||++|++|.+|++..++++....++++|+.+++.++|+..........+.....|..+.... ...+......+.+++|
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~p 160 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFFILP 160 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHTHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999776333333333367888876655 3456667788889999
Q ss_pred hHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHHHHHhhhhHHHHHhcc---CCC--
Q psy17917 195 CVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVD---SEV-- 269 (342)
Q Consensus 195 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~~---~~~-- 269 (342)
+++++++|..+++.++++.++.++... +..+++.++|+|.++++..+++.|++||+|+.+..+.. ...
T Consensus 161 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~ 233 (257)
T PF00001_consen 161 LIIILICYIRILRKLRRQRKRIKSQSS-------SSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSL 233 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTCCHTS-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTC
T ss_pred eeeeeeecccccccccccccccccccc-------cccccccccccccccccccccccccccCCceeHHHHHHHHcCccch
Confidence 999999999999999988775433221 33334556677999999999999999999999987653 222
Q ss_pred CCchHHHHHHHHHHhhhchhhhHH
Q psy17917 270 HFPGLHVISYIFLYLSACINPIIY 293 (342)
Q Consensus 270 ~~~~~~~~~~~l~~~~~~~np~iy 293 (342)
.......+..++.++|+++||++|
T Consensus 234 ~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 234 ISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhCcEEC
Confidence 234577888899999999999998
No 9
>KOG2087|consensus
Probab=99.94 E-value=1.4e-27 Score=192.86 Aligned_cols=268 Identities=18% Similarity=0.226 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhh-------ccccccccchh
Q psy17917 21 ITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYF-------KTWIHGKFLCT 93 (342)
Q Consensus 21 ~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~-------~~~~~~~~~C~ 93 (342)
+.-+...++..++++||.+|+......+...++...++.|||++|+++++.......++... ..|..+...|+
T Consensus 26 ~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~ 105 (363)
T KOG2087|consen 26 ILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCP 105 (363)
T ss_pred eeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCc
Confidence 45566788999999999999999888777778999999999999999997766555544322 12334667999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCcccccc
Q psy17917 94 VVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSI 173 (342)
Q Consensus 94 ~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 173 (342)
+.+++..++...|++.++.+++||++.|++|++..+....+....+.+.+|+.+++.++.|+++ .. .......|..
T Consensus 106 ~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g-~s---~Y~~~~vClP 181 (363)
T KOG2087|consen 106 VAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFG-IS---SYGASSVCLP 181 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccC-CC---CCcccceeee
Confidence 9999999999999999999999999999999998888777778889999999999999988886 22 2223356765
Q ss_pred CCCCC-Cch-hHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHH
Q psy17917 174 LPDEN-GRS-SKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLS 251 (342)
Q Consensus 174 ~~~~~-~~~-~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (342)
...++ ... ++...++....+.++++..+|.+++..+++....... ...+.++-+..++++
T Consensus 182 L~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~------------------~~~~~akr~a~LvfT 243 (363)
T KOG2087|consen 182 LHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSATL------------------ISTSVAKRMAFLVFT 243 (363)
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcccc------------------chhhhhhCeeEEEEc
Confidence 43322 222 5667777788889999999999999888764321110 002566777788889
Q ss_pred HHHhhhhHHHHHhccCCC---CCch-HHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhh
Q psy17917 252 FLTCYLPITVVKTVDSEV---HFPG-LHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMC 310 (342)
Q Consensus 252 f~~~~~P~~i~~~~~~~~---~~~~-~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~ 310 (342)
-.+||.|..++.+..... .... ...+.....-+|+++||++|.++++.||+.++.+..+
T Consensus 244 d~icw~Pi~f~~~~al~~~~li~~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k 306 (363)
T KOG2087|consen 244 DCICWCPIAFFKFSALIGVELISVSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSK 306 (363)
T ss_pred cccccCchheeeeHHhcCCcccChhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhh
Confidence 999999988776543221 1111 2234445667899999999999999999999988753
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.93 E-value=3.4e-25 Score=180.99 Aligned_cols=251 Identities=19% Similarity=0.287 Sum_probs=182.6
Q ss_pred HHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccchhhhhhhhhhhhHHHHHHH
Q psy17917 31 VVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCI 110 (342)
Q Consensus 31 ~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~ 110 (342)
++|++||..++..+.++|++|+|.++++..+|++|++.+...+|.....+ ++.......|-.+.+...++.......+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999888887766333 2344567789999999999999999999
Q ss_pred HHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCccccccCCCCCCchhHHHHHHHh
Q psy17917 111 AMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLIG 190 (342)
Q Consensus 111 ~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~ 190 (342)
.+|++||++||+.|.+|++..+++..........+.+.......+.. ..++....|.....-....+..+....
T Consensus 80 l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~C~pp~a~~~~~~~~~~~~~- 153 (257)
T PF10320_consen 80 LAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGFLY-----RDDETIVICNPPLAFHGTASQIWSYSN- 153 (257)
T ss_pred HHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhheeEe-----cCCcccccCCCccccCccHHHHHHHHH-
Confidence 99999999999999999999888866555555555555554333222 122346688876555444544433332
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHHHHHhhhhHHHHHhcc----
Q psy17917 191 FVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVD---- 266 (342)
Q Consensus 191 ~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~~---- 266 (342)
. +.-+++++.|...+...+++.++ ..++++|..|.+...++.|+.+|.-..+.....
T Consensus 154 ~-~inv~tvivY~i~~~~~~~k~~~------------------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~ 214 (257)
T PF10320_consen 154 I-IINVITVIVYIITIIIFKRKSRS------------------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALG 214 (257)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHccc------------------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhC
Confidence 2 22344556677666666554332 122234788888888889999998766554332
Q ss_pred CCCCC-chHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHH
Q psy17917 267 SEVHF-PGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVL 308 (342)
Q Consensus 267 ~~~~~-~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~ 308 (342)
.+.+. ..+.....+...++.+.|.++|.++|+|||+++++++
T Consensus 215 ~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 215 LDGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 22111 1255666788899999999999999999999999864
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.89 E-value=6.4e-22 Score=164.20 Aligned_cols=269 Identities=17% Similarity=0.170 Sum_probs=195.2
Q ss_pred HHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhcccccccc-chhhhhhhhhhhhHHHH
Q psy17917 29 IAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKF-LCTVVPFIQYSNVGVSL 107 (342)
Q Consensus 29 ~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~s~ 107 (342)
++++|++.|.+++..+.+.+++|++.+.+..+.|++|.+.++..+.........+.....+. .-.+.+.....+...+.
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP 82 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999998754443333233222222222 23344777888888999
Q ss_pred HHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCccccccCCCCCCchhHHHHH
Q psy17917 108 SCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALF 187 (342)
Q Consensus 108 ~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~ 187 (342)
++..+||++|+.||..|.+|++..+.+.+..++++.|++++....+........+.++++...-.+..++.-..+.....
T Consensus 83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~~~~~~~ 162 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGNYSWYFD 162 (274)
T ss_pred HHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccchhhhHHH
Confidence 99999999999999999999999999999999999999999777666554344444554443333322223333444444
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHHHHHhhhhHHHHHhccC
Q psy17917 188 LIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVDS 267 (342)
Q Consensus 188 ~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~~~ 267 (342)
......-.+++..++..++.++++.+++. ...+++.++++++|++..++....-..+.+.+.-+....-...
T Consensus 163 ~~~~~~~~~~~~~lni~t~ikl~~~~~~~--------~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~~ 234 (274)
T PF10328_consen 163 FYKNFILVIISNILNIITFIKLRKFRKKI--------SVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLSS 234 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc--------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555556777788899998888877664 1222234456677889999999999999999988877655433
Q ss_pred CCCCchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHH
Q psy17917 268 EVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTV 307 (342)
Q Consensus 268 ~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~ 307 (342)
+ .............+..++|++|+...|+|+|+.+++.
T Consensus 235 ~--~~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~ 272 (274)
T PF10328_consen 235 N--RWWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKK 272 (274)
T ss_pred c--cHHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhc
Confidence 3 2223344445567778899999999999999988763
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.88 E-value=9.2e-22 Score=167.35 Aligned_cols=272 Identities=19% Similarity=0.295 Sum_probs=194.4
Q ss_pred HHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhc---c--ccc----cccchhhhhhh
Q psy17917 28 IIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFK---T--WIH----GKFLCTVVPFI 98 (342)
Q Consensus 28 ~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~---~--~~~----~~~~C~~~~~~ 98 (342)
++.++|+++|.+.+.++.|+..+.++.|.++..+|++|++..+..++........+ + .+. ......+...+
T Consensus 5 ~~~~~g~~~N~~h~~VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l 84 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESL 84 (318)
T ss_pred EEeHHHHHHHHHHhhhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Confidence 35689999999999988875544468999999999999999888777766544432 1 111 11223344567
Q ss_pred hhhhhHHHHHHHHHHHHHhhheeccccccc--ccchhhHHHHHHHHHHHHHHHhhhccccCCCCcccc---CCCcccccc
Q psy17917 99 QYSNVGVSLSCIAMITINRYIMIAHHQMYN--TIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDL---DTRLLTCSI 173 (342)
Q Consensus 99 ~~~~~~~s~~~~~~iaidRy~ai~~p~~~~--~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~~C~~ 173 (342)
...+...|.|..++||+.|++++.+|.+.+ +..+++.+...+.++++.+.+.+.+.+.. ...... ......|..
T Consensus 85 ~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~-~~i~~~~~~~~p~~~C~~ 163 (318)
T PF10324_consen 85 SDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFR-YKIVEVSDPWVPPPNCSG 163 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhce-EEEEeccccccCCCceee
Confidence 777888999999999999999999997643 45677778888888888888888887754 222211 112344652
Q ss_pred CCCC-C---------------Cc----hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHH
Q psy17917 174 LPDE-N---------------GR----SSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELK 233 (342)
Q Consensus 174 ~~~~-~---------------~~----~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (342)
.++. . +. .+.....++.-++|.++..++...+++.+|+.+++.++..++.
T Consensus 164 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~---------- 233 (318)
T PF10324_consen 164 FPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSK---------- 233 (318)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccc----------
Confidence 1110 0 00 0111112334678999999999999999999887765543111
Q ss_pred hhhccchhHHHHHHHHHHHHHhhhhHHHHHhccCC--CC------CchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHH
Q psy17917 234 AKRNDMRITKMVLVIFLSFLTCYLPITVVKTVDSE--VH------FPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYK 305 (342)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~~~~--~~------~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~ 305 (342)
.+++.+.+++++.+++.|+++.+|..+..+++.. .. ......+...+..+|+..|++||..++.+||+++|
T Consensus 234 -~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~ 312 (318)
T PF10324_consen 234 -SKKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVK 312 (318)
T ss_pred -cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHH
Confidence 2344588999999999999999999988876431 11 12356677889999999999999999999999999
Q ss_pred HHHhhh
Q psy17917 306 TVLMCE 311 (342)
Q Consensus 306 ~~~~~~ 311 (342)
++++|+
T Consensus 313 ~~f~~k 318 (318)
T PF10324_consen 313 KLFGCK 318 (318)
T ss_pred HHhccC
Confidence 999774
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.87 E-value=8.7e-20 Score=152.17 Aligned_cols=289 Identities=15% Similarity=0.197 Sum_probs=198.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhhhhhhcc---CCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccchh
Q psy17917 17 VTLKITAVCTVIIAVVGVVGNSLTVVALLR---CPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCT 93 (342)
Q Consensus 17 ~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~---~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~ 93 (342)
....+..++..+..++|++||++++.+... +++.-+|.+.++.+||+++++................+....+..++
T Consensus 4 ~~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF05296_consen 4 SLEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYK 83 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHH
Confidence 345566788888999999999999888753 33334799999999999999987665555555555555555667888
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhheecccccc----cccchhhHHHHHHHHHHHHHH--HhhhccccCCCCccc--cC
Q psy17917 94 VVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMY----NTIYKPVWIGCMIAFCYALSF--GMQIPTLAGQWGRFD--LD 165 (342)
Q Consensus 94 ~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~----~~~~~~~~~~~~i~~~w~~~~--~~~~~~~~~~~~~~~--~~ 165 (342)
...+...+....|.|..+++++--++.|+...+. -+++=.+.+..++.+.++.++ ....|.......... ..
T Consensus 84 ~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~~ 163 (303)
T PF05296_consen 84 IIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTNN 163 (303)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccccC
Confidence 8889999999999999999999999999875331 112222334456677777777 333443322110100 11
Q ss_pred CCccccccCCCCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHH
Q psy17917 166 TRLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMV 245 (342)
Q Consensus 166 ~~~~~C~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
..+.......+.....+......+..++|+++++++...+...++||.|++++.....++++ .+.+.|++|++
T Consensus 164 ~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps-------~~aH~~a~k~~ 236 (303)
T PF05296_consen 164 SRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPS-------TEAHIRAIKTM 236 (303)
T ss_pred CCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC-------cHHHHHHHHHH
Confidence 11111111111112222333345888999999999999999999999999987654433332 23344888999
Q ss_pred HHHHHHHHHhhhhHHHHHhccCCCCCchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhhhh
Q psy17917 246 LVIFLSFLTCYLPITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEK 312 (342)
Q Consensus 246 ~~~~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~~~ 312 (342)
....+.|.++++-..+...............+......++|..+|++.++.|+++|+++++.++|.|
T Consensus 237 ~sfl~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~k 303 (303)
T PF05296_consen 237 ISFLILYIIYFLSLILSFLSFFFPENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCLK 303 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 8888888887765554333332333344567778889999999999999999999999999998754
No 14
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.83 E-value=6.3e-18 Score=139.23 Aligned_cols=263 Identities=17% Similarity=0.200 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccchhhhhhhh
Q psy17917 20 KITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQ 99 (342)
Q Consensus 20 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 99 (342)
.....+..+.++++++|.++++..+...|++|++.+.++.-++++|++..+..+... ..++...++..|.+++++.
T Consensus 7 ~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~----~~~~~~~~s~lC~~Qafli 82 (303)
T PF05462_consen 7 RTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMT----LSPSAGENSFLCQFQAFLI 82 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCcchhhHhHHH
Confidence 455666777899999999999999999999999999999999999999775443221 1133345678899999999
Q ss_pred hhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCccccccCCCCCC
Q psy17917 100 YSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENG 179 (342)
Q Consensus 100 ~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 179 (342)
+++..++.+..++||++=|..++++.. ..++.-....+.+|.++++.+..++.. + .+.....+|+..++...
T Consensus 83 q~f~~as~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i~l~~--~--~~g~~G~WCWI~~~~~~ 154 (303)
T PF05462_consen 83 QFFMLASFLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVIPLIG--N--DYGPAGNWCWIKPEWDV 154 (303)
T ss_pred HHhhHHHHHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHc--c--CCCCCCCceeecCCCcc
Confidence 999999999999999999999887522 234455667889999999988766543 2 23344568998654322
Q ss_pred chhHHHHHHHhhhhhhHHHHHHHHHHHHHHH--hcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHHHHHhhh
Q psy17917 180 RSSKRALFLIGFVIPCVIIILCYAKIFWVVR--SSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYL 257 (342)
Q Consensus 180 ~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 257 (342)
+ -...+.+|+.++.... .++..+. ...+..+. ... .+ +.+. .+....+..-.++|++||.
T Consensus 155 --~----r~~lfY~Pl~ii~~~~-~ilv~i~~~~~y~~~~~---~~s-d~---~~~~----~~~~~kL~~Yp~ifiicw~ 216 (303)
T PF05462_consen 155 --W----RFALFYIPLWIIIIIS-AILVGITMRYIYRVIRN---GVS-DN---KDKH----LKYQLKLVNYPLIFIICWI 216 (303)
T ss_pred --h----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcc---ccc-hh---HHHH----HHHHHHHHHHHHHHHHHHH
Confidence 1 1233445543322222 1221221 11111111 111 11 1111 1222235568999999999
Q ss_pred hHHHHHhccCCCCC-chHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhhhh
Q psy17917 258 PITVVKTVDSEVHF-PGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEK 312 (342)
Q Consensus 258 P~~i~~~~~~~~~~-~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~~~ 312 (342)
|..+..+.+..... ..+..+...++.+.+.+|.++|++.++-.+|.+...++|..
T Consensus 217 fa~INRI~~~~~~~~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~~~ 272 (303)
T PF05462_consen 217 FATINRIYNFIGKNPFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILCQF 272 (303)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 99998887643332 34555656777788999999999999999999888776543
No 15
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.81 E-value=1.1e-18 Score=144.55 Aligned_cols=267 Identities=21% Similarity=0.345 Sum_probs=177.5
Q ss_pred HHHHHHhhHhhhhhhccCCc----cccchhhHHHhHhHHHHHHHhhhhhhhhHHHh---hcc-ccccccchhhhhhhhhh
Q psy17917 30 AVVGVVGNSLTVVALLRCPK----IRNVAAAFIVSLCIADFFFCLLVIPFSTTRFY---FKT-WIHGKFLCTVVPFIQYS 101 (342)
Q Consensus 30 ~~~g~~~N~~vl~~i~~~~~----~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~---~~~-~~~~~~~C~~~~~~~~~ 101 (342)
+++.++....++..+.+.|+ .+++.+.++.+.+++|++..+........... .+. ...++..-++.....+.
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~ 84 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYY 84 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHH
Confidence 34556677777777766544 45888999999999999987654433322222 110 11222234555566667
Q ss_pred hhHHHHHHHHHHHHHhhheecccc-cccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCccccccCCCCCCc
Q psy17917 102 NVGVSLSCIAMITINRYIMIAHHQ-MYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGR 180 (342)
Q Consensus 102 ~~~~s~~~~~~iaidRy~ai~~p~-~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 180 (342)
.........+++|++||.||++|. ++.+..++.+...+++.-|+.+.+.++|..... ...++.....- ...+.+..
T Consensus 85 ~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~--~~~f~~~~~~~-~~~d~~~~ 161 (283)
T PF10323_consen 85 FLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDT--DFYFDNEENMS-LFVDPEFI 161 (283)
T ss_pred HHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccC--ceeeeccccee-eecCHHHH
Confidence 777888899999999999999999 778888888888999999999999999966642 22222222211 11112212
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHHHHHhhhhHH
Q psy17917 181 SSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPIT 260 (342)
Q Consensus 181 ~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~ 260 (342)
............+..+..+++|+.++..+||+.| +..++..++.++|.+.+.+..+....+++...-+.
T Consensus 162 ~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k-----------~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~ 230 (283)
T PF10323_consen 162 QRNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNK-----------KKSKSSSRSRRREIRLAIQVFILFCAFFVILVYYI 230 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333444556677889999999999998764 11222335667777888888777777666555544
Q ss_pred HHHhccCCCCCc-h--HHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhh
Q psy17917 261 VVKTVDSEVHFP-G--LHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMC 310 (342)
Q Consensus 261 i~~~~~~~~~~~-~--~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~ 310 (342)
............ . ....-..+..+.+.+||+.-...|+++|+++++.++|
T Consensus 231 ~~~~~~~~~~~~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 231 FSNYFAQNFNTDPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence 444433333333 2 2235556777889999999999999999999998876
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.75 E-value=1.5e-16 Score=131.93 Aligned_cols=276 Identities=13% Similarity=0.126 Sum_probs=182.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhcc-ccccccchhh
Q psy17917 16 DVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKT-WIHGKFLCTV 94 (342)
Q Consensus 16 ~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~-~~~~~~~C~~ 94 (342)
+..+.+.++...+.+++-.+.+...+.++.+++..|.+.+.++.-|++.|+......-.......+.|. .-..+..-.+
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G~vfC~~P~~~~i 108 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIFGAVFCSYPRFIYI 108 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCccccCCchHhhh
Confidence 567778999999999999999999999999888778999999999999999986543222222222221 1111222334
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHH--HHHHHHHHHHhhhccccCCCCccccCCCccccc
Q psy17917 95 VPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCM--IAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCS 172 (342)
Q Consensus 95 ~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~--i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 172 (342)
.+.+...++.++......+++||..-+..|......+.+++.... +..++.+-..+..++... ++......
T Consensus 109 ~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~F-------ns~~~sw~ 181 (313)
T PF10321_consen 109 MGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLF-------NSEYMSWF 181 (313)
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccC-------CCCcceEe
Confidence 456666777788888999999999999998766666665554333 333333333323344432 11111122
Q ss_pred cCC----CCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHH
Q psy17917 173 ILP----DENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVI 248 (342)
Q Consensus 173 ~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
+|+ +.+...|.........++-...+..+|..+...++++.+.... .+..+.+++...+..++
T Consensus 182 fDP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~s-------------~~~~k~~~qI~iQs~iI 248 (313)
T PF10321_consen 182 FDPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYSTS-------------SQLSKAQRQIFIQSVII 248 (313)
T ss_pred cCccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-------------hhhhhhhHHHHHHHHHH
Confidence 222 1222234444444555555777888899999888876544211 13344455777888887
Q ss_pred HHHHHHhhhhHHHHHhccCCCCCchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhhhhhh
Q psy17917 249 FLSFLTCYLPITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNR 314 (342)
Q Consensus 249 ~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~~~~~ 314 (342)
.+.+.+.++-|.. ++....++++..+.....-+++..+|+||...|+.+|+++++.++.++.|
T Consensus 249 C~f~~i~a~iyv~---m~f~~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~~r 311 (313)
T PF10321_consen 249 CFFHAIAAVIYVY---MQFFPPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKKIR 311 (313)
T ss_pred HHHHHHHHHHHHe---eeeecccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHcccccc
Confidence 7777776655544 33334556777888899999999999999999999999999999755433
No 17
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=99.43 E-value=6.5e-13 Score=106.70 Aligned_cols=246 Identities=18% Similarity=0.235 Sum_probs=162.8
Q ss_pred cccchhhHHHhHhHHHHHHHhh-hhhhhhHHHhhccccccccchhhhhhhhhhhhHHHHHHHHHHHHHhhheeccccc-c
Q psy17917 50 IRNVAAAFIVSLCIADFFFCLL-VIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQM-Y 127 (342)
Q Consensus 50 ~~~~~~~~l~~lai~dl~~~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~-~ 127 (342)
+.+|.+..+.+||++|++..+. .+|.. ......+ .+++.+|++..++.-++-+.|+.+.+++++.+-+.|.-... +
T Consensus 7 r~kp~dlIl~hLa~aN~lvLl~rGip~~-~~~~~~~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~w 84 (265)
T PF03402_consen 7 RLKPIDLILIHLALANILVLLSRGIPQT-MAFFGWK-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSRW 84 (265)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhhHHHH-HHHhhcc-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCchh
Confidence 3579999999999999988654 34432 2222222 35899999999999999999999999999987777754321 1
Q ss_pred --cccchhhHHHHHHHHHHHHHHHhhhccccC---CCCcc--ccCCCccccccCCCCCCc-hhHHHHHHHhhhhhhHHHH
Q psy17917 128 --NTIYKPVWIGCMIAFCYALSFGMQIPTLAG---QWGRF--DLDTRLLTCSILPDENGR-SSKRALFLIGFVIPCVIII 199 (342)
Q Consensus 128 --~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~---~~~~~--~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~p~~~~~ 199 (342)
-+...++.....+...|++..+........ ..... +......+|......... ........+--++.+.+|+
T Consensus 85 ~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~fvgLM~ 164 (265)
T PF03402_consen 85 AELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVLFVGLMI 164 (265)
T ss_pred hhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHHHHHHHH
Confidence 111234456667788899888776432221 11111 111223567654332221 1222223333455677888
Q ss_pred HHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHHHHHhhhhHHHHHhcc-CCCCCchHHHHH
Q psy17917 200 LCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVD-SEVHFPGLHVIS 278 (342)
Q Consensus 200 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~~-~~~~~~~~~~~~ 278 (342)
...+.+...+.||+|+.+...+...+++. ..|.|+++++++++..|+..+....+..... ...+.+....+.
T Consensus 165 ~aSgyMV~~L~RH~q~VqhIhs~~~s~r~-------SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~~~~~~~~~ 237 (265)
T PF03402_consen 165 WASGYMVFLLYRHHQQVQHIHSSSLSPRS-------SPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKNSPWLLNIS 237 (265)
T ss_pred hhhhhheeeeeecccccccCcCCCCCCCC-------ChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcCCcceeEHH
Confidence 99999999999999888776554443322 2345899999999999998888776654321 112233444567
Q ss_pred HHHHHhhhchhhhHHhhcchhHHHHH
Q psy17917 279 YIFLYLSACINPIIYVIMNKQYRVAY 304 (342)
Q Consensus 279 ~~l~~~~~~~np~iy~~~~~~~R~~~ 304 (342)
.++..+.|.+.|++.+..++++.+-+
T Consensus 238 ~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 238 VFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred HHHhHHhHhhChHHhhccCchHHHHh
Confidence 78899999999999999999887654
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=99.42 E-value=3e-11 Score=101.19 Aligned_cols=270 Identities=18% Similarity=0.192 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHhhHhhhhhhccCC-ccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhc-----------cccccccc
Q psy17917 24 VCTVIIAVVGVVGNSLTVVALLRCP-KIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFK-----------TWIHGKFL 91 (342)
Q Consensus 24 ~~~~~~~~~g~~~N~~vl~~i~~~~-~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 91 (342)
++..+.+.+|++.|.++++.+.++. +.-++..+++.|-|+.|++.++...... ...... ....|+..
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q-~R~i~~~~~~~~~~~GpC~~~~~~~ 81 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQ-PRIIPNGTSIAVISYGPCRYFGPWF 81 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccCCCCcEEEEeeecceecCcHH
Confidence 3467789999999999998887644 4347788999999999999875443322 111111 12346778
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCcccc
Q psy17917 92 CTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTC 171 (342)
Q Consensus 92 C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C 171 (342)
|.....+...+...+.+++.+--..||..+.++.. ++++....+...+..++................+......
T Consensus 82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~ 156 (292)
T PF10317_consen 82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQF 156 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHh
Confidence 88888888888888999999999999999987632 5556666777777777776655444322221111111111
Q ss_pred ccCC--CCC---C-chhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHH
Q psy17917 172 SILP--DEN---G-RSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMV 245 (342)
Q Consensus 172 ~~~~--~~~---~-~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
..+. ++. + ..............-.+.....+..++..-||-.+..++..... .++.++.+++..+.+
T Consensus 157 ~p~y~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~~~-------S~~tk~~h~~lv~~L 229 (292)
T PF10317_consen 157 HPEYNLENYSISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKKSSSM-------SERTKSMHRQLVKGL 229 (292)
T ss_pred CcccccccceeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhc-------CHHHHHHHHHHHHHH
Confidence 1100 000 0 00000101111111111112222222222222222222211111 112233445778888
Q ss_pred HHHHHHHHHhhhhHHHHHhcc--CCCCCchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHH
Q psy17917 246 LVIFLSFLTCYLPITVVKTVD--SEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKT 306 (342)
Q Consensus 246 ~~~~~~f~~~~~P~~i~~~~~--~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~ 306 (342)
.+....=.++..|........ ...+.+..+.....+..+.+.+||++...+-+.||++++|
T Consensus 230 t~Q~~lP~~~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 230 TIQALLPLFFYIPGVIIYFLSQFTGYEHPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 888888888888766655543 3344556778888889999999999999999999998864
No 19
>KOG4193|consensus
Probab=99.32 E-value=5.2e-10 Score=100.65 Aligned_cols=258 Identities=14% Similarity=0.115 Sum_probs=155.1
Q ss_pred HHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccc-ccc-chhhhhhhhhhhhHHHHH
Q psy17917 31 VVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIH-GKF-LCTVVPFIQYSNVGVSLS 108 (342)
Q Consensus 31 ~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~-~~~-~C~~~~~~~~~~~~~s~~ 108 (342)
.+++++=.+.+++.+--|++++..+....||+++=++.-++ ++.+.|.. ... .|...+.+.+++..+.+.
T Consensus 331 ~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l~--------fL~~~~~~~~~~~~C~~~a~llhff~LaaF~ 402 (610)
T KOG4193|consen 331 IISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAELL--------FLLGIDRTSTSVVLCIAAAILLHFFFLAAFF 402 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH--------HhcccccccCcccccHHHHHHHHHHHHHHHH
Confidence 33333333444444444444544477888888873332211 11222222 223 799999999999999999
Q ss_pred HHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCccccccCCCCCCchhHHHHHH
Q psy17917 109 CIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFL 188 (342)
Q Consensus 109 ~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 188 (342)
.+.+++++-|..++. ..+...+++........|..++++...........+........|+.+.+.....
T Consensus 403 Wm~leg~hl~~~~v~---vf~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~~------- 472 (610)
T KOG4193|consen 403 WMLLEGFHLYLLLVE---VFRSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFIW------- 472 (610)
T ss_pred HHHHHHHHHHHHHHH---HhccccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceEE-------
Confidence 999999999995544 2333344555555569999999888766654333322222333488765544222
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHHHHHhhhhHHHHHhccCC
Q psy17917 189 IGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVDSE 268 (342)
Q Consensus 189 ~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~~~~ 268 (342)
.++.|+.+++.+++.++...-++..+......+.. ++....+..+..+.+..+.-++|.--.....-+
T Consensus 473 -~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~---------~~~~~~~~~~~~l~L~~lLGlTW~fgi~s~~~~-- 540 (610)
T KOG4193|consen 473 -SFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIA---------SKLENISLIRSALALLFLLGLTWIFGIFSWLPG-- 540 (610)
T ss_pred -EEehHHHHHHHHHHHHHHHHHHHHhhcccccCcch---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 17778888888886666555443333222111110 011111566777777777778887444332222
Q ss_pred CCCchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhhhhhhhhhhh
Q psy17917 269 VHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRLLSSI 319 (342)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~~~~~~~~~~ 319 (342)
....+.++..++..+..+.=.+.|..++++.|++.++.+||.+.+.....
T Consensus 541 -~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~~~~~~~~ 590 (610)
T KOG4193|consen 541 -TSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGRGDSSASE 590 (610)
T ss_pred -cchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccCCCCCCCc
Confidence 34456666667777777777888999999999999999986655544433
No 20
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=99.29 E-value=5.8e-11 Score=92.68 Aligned_cols=161 Identities=18% Similarity=0.172 Sum_probs=109.6
Q ss_pred ccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccchhhhhhhhhhhhHHHHHHHHHHHHHhhheeccccccc
Q psy17917 49 KIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYN 128 (342)
Q Consensus 49 ~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~ 128 (342)
+++.-.+.++.||.++|++.++..+.........+.-..++..|..++++.+.+..++-+...+||++-|+.|.+|...+
T Consensus 31 r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~~ 110 (201)
T PF11710_consen 31 RRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWKR 110 (201)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 33455556999999999999877666455555544555567899999999999999999999999999999999982211
Q ss_pred c---------cchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCccccccCCCCCCchhHHHHHHHhhhhhhHHHH
Q psy17917 129 T---------IYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVIII 199 (342)
Q Consensus 129 ~---------~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 199 (342)
+ ...+..+.....+.|++....+... .+...+.+....|+...+.. .+.....-+.-++..+.++
T Consensus 111 ~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~----~~~~~Y~~~g~WCWi~~~~~--~~Rl~l~y~~~~~~~~~~i 184 (201)
T PF11710_consen 111 KRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIG----LGGPGYGPAGAWCWIPSRYE--WYRLWLHYIWRFIIIFAII 184 (201)
T ss_pred ccccccccceEEeeeeeehHHHHHHHHHHHHHHhc----cccCcccccCcEEEECCCcH--HHHHHHHHHHHHHHHHHHH
Confidence 1 0112223333335555544443322 22233556688999866554 3444555555566678888
Q ss_pred HHHHHHHHHHHhcHHH
Q psy17917 200 LCYAKIFWVVRSSEKR 215 (342)
Q Consensus 200 ~~~~~i~~~l~~~~~~ 215 (342)
+.|..++..+||+.|+
T Consensus 185 ~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 185 IIYIAIFFYLRRRIRR 200 (201)
T ss_pred HHHHHHHHHHhhhhcc
Confidence 9999999999987653
No 21
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=99.16 E-value=3.5e-08 Score=83.91 Aligned_cols=274 Identities=12% Similarity=0.177 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHh---h---c-cccccccch
Q psy17917 20 KITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFY---F---K-TWIHGKFLC 92 (342)
Q Consensus 20 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~---~---~-~~~~~~~~C 92 (342)
.....+..+++++|++.++..+..+.+++..|....+++....++.++.++........+.+ . + +...+...|
T Consensus 17 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C 96 (324)
T PF10292_consen 17 RLSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRC 96 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHH
Confidence 34556678888999999998888888888888888899999999999887554333322222 1 1 233466788
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCcccc-CCCcccc
Q psy17917 93 TVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDL-DTRLLTC 171 (342)
Q Consensus 93 ~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~C 171 (342)
-.......++......+..++.+||++|..+.-+|.+.. +.....+..+.|.++.......+. ..+. +....+|
T Consensus 97 ~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~~-~~~Gi~l~~~qi~is~~~~~~~~~----~~~~~~~~~~yC 171 (324)
T PF10292_consen 97 FILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKSG-KWLGILLAFFQILISLLILYFVYS----DEDFPNERMYYC 171 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCC-ccHHHHHHHHHHHHHHHHHHHHHh----hhhccCccceee
Confidence 888888999999999999999999999999988887653 333334444445555554332222 1222 4455678
Q ss_pred ccCCCCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHH
Q psy17917 172 SILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLS 251 (342)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (342)
....+......... ..+..++ -++..+.+..+++ ..++.++...... -.++=+.+++.|..+++..++..
T Consensus 172 ~~~~~~~~~~~~~~-~~~~~~~-~i~~~i~f~~L~~----~Nkk~r~~~~~~~----LS~RYQl~ENl~slr~L~p~~~~ 241 (324)
T PF10292_consen 172 QASSSSSPYRVNIP-FIVILVL-QILALILFRYLLR----KNKKLRKQQKHST----LSERYQLEENLRSLRLLKPFIIL 241 (324)
T ss_pred EEecCCCchhhHHH-HHHHHHH-HHHHHHHHHHHHH----HHHHHHhhccCCC----cchHHhHHhHHHHHHHHHHHHHH
Confidence 76544422211111 1111111 1111222222222 2222222111111 11111223334555555444444
Q ss_pred HHHhhhhHHHHHh----ccCCCCCchHHHHH--HHHHHhhhchhhhHHhhcchhHHHHHHHHH
Q psy17917 252 FLTCYLPITVVKT----VDSEVHFPGLHVIS--YIFLYLSACINPIIYVIMNKQYRVAYKTVL 308 (342)
Q Consensus 252 f~~~~~P~~i~~~----~~~~~~~~~~~~~~--~~l~~~~~~~np~iy~~~~~~~R~~~~~~~ 308 (342)
..+.-+.+.+..+ .......+....+. ......++.+-|++.....++.|++.++-+
T Consensus 242 ~~i~~~~~~~~~~~~~~~~~~~~~~~y~al~e~~~~~P~Y~ii~~~~~~~~~k~~r~~~~~~l 304 (324)
T PF10292_consen 242 SSIFIFFYIFASIFLRLFNPSMSKPNYFALAELNHIFPLYSIISPLILYRKIKKIRKKRKKRL 304 (324)
T ss_pred HHHHHHHHHHHHHHHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333332221 22222222222222 234556889999999988888888776655
No 22
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=99.14 E-value=1.9e-09 Score=89.94 Aligned_cols=256 Identities=16% Similarity=0.157 Sum_probs=146.9
Q ss_pred HHHHHHHHHhhHhhhhhhccCCc--c-ccchhhHHHhHhHHHHHHHhhhhhh-hhHHH-------hhccccccccchhhh
Q psy17917 27 VIIAVVGVVGNSLTVVALLRCPK--I-RNVAAAFIVSLCIADFFFCLLVIPF-STTRF-------YFKTWIHGKFLCTVV 95 (342)
Q Consensus 27 ~~~~~~g~~~N~~vl~~i~~~~~--~-~~~~~~~l~~lai~dl~~~~~~~~~-~~~~~-------~~~~~~~~~~~C~~~ 95 (342)
.+-++.+++.+..+++++.++++ . +++.+.+...-++.|++.-+...+. ..... ........+...++.
T Consensus 5 ~~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (275)
T PF02118_consen 5 LIYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIF 84 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHH
Confidence 44577788889988888887776 3 6788888888888888775443332 11111 000012234566677
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCccccccCC
Q psy17917 96 PFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILP 175 (342)
Q Consensus 96 ~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 175 (342)
.++...+..+.......+++||+-++..|.++.+..++.. ...++++.++++....+.... ......+++...-....
T Consensus 85 ~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 162 (275)
T PF02118_consen 85 YFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSFTWNIFIS-PTYVVYDNGGFSYSYND 162 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHHHHHHHcc-ccEEEEECCceEEEEEe
Confidence 7788888889999999999999999999998888766543 334444555555443333332 22233332222211111
Q ss_pred CCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHHHHHh
Q psy17917 176 DENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTC 255 (342)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 255 (342)
.. ............+++..++.++++....+++++.+++ .++.|++..+..++..+.+.+.
T Consensus 163 ~~-~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~~------------------~~~~er~L~~is~~~~~~~~~~ 223 (275)
T PF02118_consen 163 TV-SWASLSIFSLIYFIIIIIITIITNIITYRRLRKLSKR------------------IKSVERNLTIISFIISFVQLLI 223 (275)
T ss_pred cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122222233334444555556666666655543321 2233457777777777777666
Q ss_pred hhhHHHH--HhccCCCC-CchHHHHHHHHHHhhhchhhhHHhhcchhHHHH
Q psy17917 256 YLPITVV--KTVDSEVH-FPGLHVISYIFLYLSACINPIIYVIMNKQYRVA 303 (342)
Q Consensus 256 ~~P~~i~--~~~~~~~~-~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~ 303 (342)
-....+. ........ .+....+.....-+-+...|++-...++++|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 224 AIWQIINSFAFFFDFLPISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 5555552 22222222 122233333334444677899999999999975
No 23
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=99.09 E-value=1.6e-10 Score=97.99 Aligned_cols=265 Identities=19% Similarity=0.188 Sum_probs=145.1
Q ss_pred HHHHHHHHHHhhHhhhhhhccCCccc-cchhhHHHhHhHHHHHHHhhhhhhhhHHHh----------hccccccccchhh
Q psy17917 26 TVIIAVVGVVGNSLTVVALLRCPKIR-NVAAAFIVSLCIADFFFCLLVIPFSTTRFY----------FKTWIHGKFLCTV 94 (342)
Q Consensus 26 ~~~~~~~g~~~N~~vl~~i~~~~~~~-~~~~~~l~~lai~dl~~~~~~~~~~~~~~~----------~~~~~~~~~~C~~ 94 (342)
-.+.++++++.|.++++.+.++.+.. ....+++...|+.|++.++.-....-.... .+.+..+....+.
T Consensus 5 ~~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (307)
T PF10326_consen 5 QYIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQI 84 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheee
Confidence 34567899999999998887654433 566788889999999988654322111111 1122233445566
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCcc------------
Q psy17917 95 VPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRF------------ 162 (342)
Q Consensus 95 ~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~------------ 162 (342)
...++..+...+...++.--+.||.++++|.+.+.. +.++....+...-+.+...............
T Consensus 85 l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~~f-~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~ 163 (307)
T PF10326_consen 85 LLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLRYF-SGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLE 163 (307)
T ss_pred hhhhhhhhHHHHHHHHHhHhhhheeeeccchhhccc-cccceeeeehhhhhhcccceEEEeehhccchhhhhhhcccccc
Confidence 667777788888899999999999999999654333 3333332222222333333322211101000
Q ss_pred --ccCCCccc---c-ccCCCCCCchhHHHHHHH-------hhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhH
Q psy17917 163 --DLDTRLLT---C-SILPDENGRSSKRALFLI-------GFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQ 229 (342)
Q Consensus 163 --~~~~~~~~---C-~~~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 229 (342)
..+.+... . .+..++++....-+...+ ...+.+.++++|-.++++++++. .... ++
T Consensus 164 ~y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~-------~~~~-S~--- 232 (307)
T PF10326_consen 164 NYGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKL-------SSIM-SS--- 232 (307)
T ss_pred ccCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcc-------cccc-Ch---
Confidence 00000000 0 000111111111112222 23344455555555555444222 1111 11
Q ss_pred HHHHhhhccchhHHHH-HHHHHHHHHhhhhHHHHHhccCCC-CCchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHH
Q psy17917 230 KELKAKRNDMRITKMV-LVIFLSFLTCYLPITVVKTVDSEV-HFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYK 305 (342)
Q Consensus 230 ~~~~~~~~~~~~~~~~-~~~~~~f~~~~~P~~i~~~~~~~~-~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~ 305 (342)
+.++-+++..+.+ +-..+..++...|..+.......+ +......+......++|++||++-.+.-||||++++
T Consensus 233 ---~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~~~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 233 ---KTRKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFGIDLGFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred ---hhHHHHHHHHHHHHHHhhhhheeeecchhheeeeeccCCCCCccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 1222233555544 445667778889999877664322 233345566677888999999999999999999874
No 24
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=99.02 E-value=4.6e-08 Score=82.06 Aligned_cols=267 Identities=15% Similarity=0.162 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhcc-CCccccchhhH---HHhHhHHHHHHHhhhhhhhhHHHhhccccccccchhh-
Q psy17917 20 KITAVCTVIIAVVGVVGNSLTVVALLR-CPKIRNVAAAF---IVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTV- 94 (342)
Q Consensus 20 ~~~~~~~~~~~~~g~~~N~~vl~~i~~-~~~~~~~~~~~---l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~~- 94 (342)
.+....+-+++.++++.|.+.++.+.. .+++.+-.+++ -....++|+-.+++.-|........+ +..| .+|+.
T Consensus 9 ~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~ag-y~~G-~l~~~f 86 (303)
T PF10327_consen 9 QWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAG-YCVG-FLARYF 86 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEE-EEEe-ehhhcC
Confidence 456677888999999999999987765 44444422222 23456789988888888777665543 1111 23333
Q ss_pred ------hhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCcccc----
Q psy17917 95 ------VPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDL---- 164 (342)
Q Consensus 95 ------~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~---- 164 (342)
...+..+......-.++.--+-|..+|.+..+.+.. ++.............++.........+..+.+.
T Consensus 87 ~i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~l-~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI 165 (303)
T PF10327_consen 87 GISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHVL-PKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYI 165 (303)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcC-cHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 223333344444455556667788888887654443 333333444444444444444333321111110
Q ss_pred CCCccccccCC--C------CCCch--hHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHh
Q psy17917 165 DTRLLTCSILP--D------ENGRS--SKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKA 234 (342)
Q Consensus 165 ~~~~~~C~~~~--~------~~~~~--~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (342)
+.....|.... - +.+.. ........+.........++...+++.+++.++++.+ +.
T Consensus 166 ~~nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~--------------~t 231 (303)
T PF10327_consen 166 RENYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISK--------------QT 231 (303)
T ss_pred HhhCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH--------------HH
Confidence 01111121111 0 00111 1122233445555677777788888888777665543 23
Q ss_pred hhccchhHHHHHHHHHHHHHhhhhHHHHHh--ccCCCCCchHHHHHHHHHHhhhchhhhHHhhcchhHHHH
Q psy17917 235 KRNDMRITKMVLVIFLSFLTCYLPITVVKT--VDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVA 303 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~--~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~ 303 (342)
.++++++.+.+.+...+-.+|-+|..+... .....+.+.+......+...+|.+|-++..+.+++||+-
T Consensus 232 y~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~~~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 232 YQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFEFEDAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecCCCcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 444557778888878888888899887654 334455566777888888899999999999999999974
No 25
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.99 E-value=1.9e-07 Score=77.33 Aligned_cols=218 Identities=16% Similarity=0.220 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHhhHhhhhhhccCCc----ccc--chhhHHHhHhHHHHHHHhhhhhhhhHHHhhcccc-----------
Q psy17917 24 VCTVIIAVVGVVGNSLTVVALLRCPK----IRN--VAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWI----------- 86 (342)
Q Consensus 24 ~~~~~~~~~g~~~N~~vl~~i~~~~~----~~~--~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~----------- 86 (342)
..-+..+++|+.|-.+-+.--.|... .++ .....+..++++|++.++..+.-...+.-.++..
T Consensus 31 avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~ 110 (405)
T PF02101_consen 31 AVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDI 110 (405)
T ss_pred hhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCcc
Confidence 34455566666666655542221111 112 2357899999999999876665544444322111
Q ss_pred ccccchhhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCC
Q psy17917 87 HGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDT 166 (342)
Q Consensus 87 ~~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~ 166 (342)
.....|.......++++.++.|.+.+-|+|-|+.+.+.- .+......-+.+|..+.++..--.... +.+
T Consensus 111 wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~a------g~~~~~lYH~~aWgl~~lL~~~Gl~~L-----y~P 179 (405)
T PF02101_consen 111 WPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSA------GRSTIWLYHMMAWGLPALLCAEGLAML-----YYP 179 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccC------CCcchhHHHHHHHHHHHHHHHhcccee-----ecC
Confidence 123689888888888999999999999999999886521 112233455788988887775433221 112
Q ss_pred CccccccCCCCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHH
Q psy17917 167 RLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVL 246 (342)
Q Consensus 167 ~~~~C~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
+...|....+. ..--.+...+|++++.+.+=.+++...+......+.+...-..+++ +....+-+..+
T Consensus 180 s~~~Ce~~l~~------alphYvttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT~~ER------~l~~~IK~kFf 247 (405)
T PF02101_consen 180 SISRCESGLEH------ALPHYVTTYIPLLLVLVANPILYIKAVRAVASLLKGRQGIYTENER------RLGAQIKIKFF 247 (405)
T ss_pred CHHhhhhhhhh------cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccHHHH------HHHHHHHHHHH
Confidence 22345432211 1222334456666666666666555544333332222111111111 11113334566
Q ss_pred HHHHHHHHhhhhHHHHHh
Q psy17917 247 VIFLSFLTCYLPITVVKT 264 (342)
Q Consensus 247 ~~~~~f~~~~~P~~i~~~ 264 (342)
.+.++|.+||+|..+.-+
T Consensus 248 ~I~lVF~iCWlpNIINg~ 265 (405)
T PF02101_consen 248 KIMLVFYICWLPNIINGS 265 (405)
T ss_pred HHHHHHHHHhhhhhHhHH
Confidence 778899999999887544
No 26
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=98.86 E-value=5.2e-07 Score=73.79 Aligned_cols=269 Identities=12% Similarity=0.146 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHhhHhhhhhhccCCccc-cchhhHHHhHhHHHHHHHhhhh--hhhhHHH-------hhcccccc-ccchh
Q psy17917 25 CTVIIAVVGVVGNSLTVVALLRCPKIR-NVAAAFIVSLCIADFFFCLLVI--PFSTTRF-------YFKTWIHG-KFLCT 93 (342)
Q Consensus 25 ~~~~~~~~g~~~N~~vl~~i~~~~~~~-~~~~~~l~~lai~dl~~~~~~~--~~~~~~~-------~~~~~~~~-~~~C~ 93 (342)
+--+.++++.+.|.+.++.+..+|+.+ ....++++..|+-|++.++.-+ |..+... ..++|-.+ ...-.
T Consensus 10 ~Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~ 89 (310)
T PF10319_consen 10 IPKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQ 89 (310)
T ss_pred HHHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHH
Confidence 335678899999999999999888766 6777899999999999987643 3222211 11222211 11222
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCc------------
Q psy17917 94 VVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGR------------ 161 (342)
Q Consensus 94 ~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~------------ 161 (342)
........+...|-..+..--+.||+++.+|...++.+.+......+...-..............+..
T Consensus 90 ~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W~~ic~~~~~ad~EiR~YIre~F~ 169 (310)
T PF10319_consen 90 HLLSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASWHVICYFCMYADDEIRDYIRESFR 169 (310)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 22333344455666777888999999999996555555444443333332222222222111110111
Q ss_pred -----cccCCCccccccCCCCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhh
Q psy17917 162 -----FDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKR 236 (342)
Q Consensus 162 -----~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
...+-+...+.+....++.....+..+....+-....+..|...-..+-++-++. .... + ++.++
T Consensus 170 e~YG~Ds~diNml~alY~eaS~~~v~rSW~gi~~~T~iS~~Si~~y~vlg~~I~~kL~~~---~~~m----S---~~T~~ 239 (310)
T PF10319_consen 170 EVYGVDSMDINMLIALYNEASDETVFRSWIGIIILTIISSYSIILYFVLGYKIMKKLNKM---SSTM----S---KKTKR 239 (310)
T ss_pred HHhCCCCCcCceEeeeeccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---hhhh----C---HhHHH
Confidence 1111111222222222333333332222222212222222333332222211111 1100 1 11222
Q ss_pred ccchhHHHHHHH-HHHHHHhhhhHHHHHhcc--CCCCCchHHHHHHHHHHhhhchhhhHHhhcchhHHHH
Q psy17917 237 NDMRITKMVLVI-FLSFLTCYLPITVVKTVD--SEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVA 303 (342)
Q Consensus 237 ~~~~~~~~~~~~-~~~f~~~~~P~~i~~~~~--~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~ 303 (342)
.+++..|.+.+. ++.-+++..|..+....+ ......+...........-|.+||+.-.+.-|.||++
T Consensus 240 lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~i~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 240 LQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFGIDLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred HHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHcCChhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 233555554443 445667777877765432 2223346677777777788999999999999999975
No 27
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=98.80 E-value=2.5e-06 Score=67.56 Aligned_cols=258 Identities=16% Similarity=0.223 Sum_probs=156.4
Q ss_pred HHHHHHHHHHhhH--hhhhhhccCCccccchhhHHHhHhHHHHHHHhh----hhhhhhHHHhhccccccccchhhhhhhh
Q psy17917 26 TVIIAVVGVVGNS--LTVVALLRCPKIRNVAAAFIVSLCIADFFFCLL----VIPFSTTRFYFKTWIHGKFLCTVVPFIQ 99 (342)
Q Consensus 26 ~~~~~~~g~~~N~--~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~----~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 99 (342)
+++..+.+.+.++ +++..+...+-.+-+...++..|.++-.+.+.. ..|.........+... +..-.+..+..
T Consensus 19 Fv~st~~stlLt~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~-s~~f~~~Sy~i 97 (305)
T PF04789_consen 19 FVLSTIASTLLTGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQ-SELFIFMSYLI 97 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhc-cchhhHHHHHH
Confidence 3344444444443 333333333333457889999999998887643 3444443444433332 23445566777
Q ss_pred hhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCC----ccccccCC
Q psy17917 100 YSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTR----LLTCSILP 175 (342)
Q Consensus 100 ~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~----~~~C~~~~ 175 (342)
.++.++-.++=..+|++|......-.+..+.+.+.-..+....+|++++......... ...+.++.. ...|....
T Consensus 98 df~h~siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~-nC~Y~y~~~~~~y~L~C~~~~ 176 (305)
T PF04789_consen 98 DFCHYSILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSN-NCRYRYNKWSKHYQLNCETCN 176 (305)
T ss_pred HHHHHHHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhC-CCeeecccccccEEEEcCCCC
Confidence 8888888888999999999877654444455566777788899999999877655544 444444432 23454331
Q ss_pred ----CCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHH
Q psy17917 176 ----DENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLS 251 (342)
Q Consensus 176 ----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (342)
.+....-...-..+.+.+|+.+.++ |+.+..++...+|. ...+.|.+.+|+.+.+.+.
T Consensus 177 ~~v~~~~P~~IqiiE~ilQ~~IPi~Il~i-YiAIIiKI~~MKks-----------------sLnK~Ei~ILKQAifIFvl 238 (305)
T PF04789_consen 177 SVVDISPPRGIQIIEIILQFGIPIFILVI-YIAIIIKIIKMKKS-----------------SLNKNEITILKQAIFIFVL 238 (305)
T ss_pred eeEeeCCCCchhHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhhc-----------------cCCchhHHHHHHHHHHHHH
Confidence 1223334456778888899877654 66666655433222 1233456777777765555
Q ss_pred HHHhhhhHHHHHhccCCCCC----chHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHH
Q psy17917 252 FLTCYLPITVVKTVDSEVHF----PGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKT 306 (342)
Q Consensus 252 f~~~~~P~~i~~~~~~~~~~----~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~ 306 (342)
|- .+..+..+-+...-. -.+..+...+-...++..|-.+.+.++|.|+-+..
T Consensus 239 FQ---~ss~VFl~~qt~~~~~~tAFlIKR~iNT~ei~agaatP~ffffTs~eirk~~s~ 294 (305)
T PF04789_consen 239 FQ---ASSCVFLLCQTFKFNVATAFLIKRIINTMEIFAGAATPCFFFFTSKEIRKLVSS 294 (305)
T ss_pred HH---HHHHHHHhheeeeecchHHHHHHHHHHHHHHHhhccCCeEEEEehHHHHHHHHh
Confidence 44 444444333211111 12455666677788899999999999999976643
No 28
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.77 E-value=1.2e-06 Score=71.71 Aligned_cols=124 Identities=12% Similarity=0.147 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhh---ccccccccchhhhh
Q psy17917 20 KITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYF---KTWIHGKFLCTVVP 96 (342)
Q Consensus 20 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~---~~~~~~~~~C~~~~ 96 (342)
.+...+..+.+.+....|..++..+..+|+.+++.-.+.-...+.|.+.++...+........ ++....+..--..+
T Consensus 6 ~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~ 85 (273)
T PF10316_consen 6 IIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIG 85 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehh
Confidence 345566677888899999999999987777456666677778999999998766654444332 11111111222223
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHH
Q psy17917 97 FIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFC 143 (342)
Q Consensus 97 ~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~ 143 (342)
................||+||.+|+..|..|++.+++-....+++.+
T Consensus 86 ~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~~~~ 132 (273)
T PF10316_consen 86 WPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIIIIIA 132 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHHHHH
Confidence 34444456678889999999999999999888876655444333333
No 29
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=98.75 E-value=1.9e-06 Score=72.96 Aligned_cols=275 Identities=15% Similarity=0.198 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhhhccCCccc-cchhhHHHhH----hHHHHHHHhhhhhhhhHHHhhcc----ccccccc
Q psy17917 21 ITAVCTVIIAVVGVVGNSLTVVALLRCPKIR-NVAAAFIVSL----CIADFFFCLLVIPFSTTRFYFKT----WIHGKFL 91 (342)
Q Consensus 21 ~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~-~~~~~~l~~l----ai~dl~~~~~~~~~~~~~~~~~~----~~~~~~~ 91 (342)
......-++.++++.-|.+..+.+.++...+ +.....++++ .+.|+..++...|........+. ...-+..
T Consensus 5 ~~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~ 84 (302)
T PF10318_consen 5 FYSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVP 84 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccC
Confidence 4456667788899999999998887654322 3444444443 46777777777775554443221 1111234
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCcccc---CCCc
Q psy17917 92 CTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDL---DTRL 168 (342)
Q Consensus 92 C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~---~~~~ 168 (342)
..++.++..........+...+--+||.++..+.+ +.. .++.-.......++.+.....|......+.... ..+.
T Consensus 85 ~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~-~~~-~~~~r~~~~~~~y~~~~~~~~~~~~~~pdQ~~~k~~~~~~ 162 (302)
T PF10318_consen 85 TPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS-RSL-WKKIRIIFIIFNYIIAFLFFIPIYLSIPDQEEAKQEVLKK 162 (302)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc-ccc-chhhHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhh
Confidence 55666677777777788888899999999986533 122 222223344455556665565655532111000 0011
Q ss_pred cccccC--CC-------CCCchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccc
Q psy17917 169 LTCSIL--PD-------ENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDM 239 (342)
Q Consensus 169 ~~C~~~--~~-------~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (342)
..|... .+ ..+..+...............++.....+.+.++++.++. . .++..+.++
T Consensus 163 ~pc~~~~~~~~~~~fv~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~---~----------S~~T~k~Qk 229 (302)
T PF10318_consen 163 YPCPPPEFFDNPPVFVLSTDSWYILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQKKT---M----------SKKTRKMQK 229 (302)
T ss_pred ccCCchhhcCCCCeEEEcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh---h----------CHHHHHHHH
Confidence 122110 01 0111122222222333333333333444444444433210 0 012223333
Q ss_pred hhHHHHHHHHH-HHHHhhhhHHHHHhcc-CCCCCchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhh
Q psy17917 240 RITKMVLVIFL-SFLTCYLPITVVKTVD-SEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMC 310 (342)
Q Consensus 240 ~~~~~~~~~~~-~f~~~~~P~~i~~~~~-~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~ 310 (342)
|..+.+.+.+. .+++.-.|........ .+...+....+...+...++.++-++..+.++.+|+.+++++||
T Consensus 230 kfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~ 302 (302)
T PF10318_consen 230 KFLIALIIQVLIPFIFLFIPLIYFIISIIFGYYNQALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC 302 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence 66655544443 3444556766655432 22333456677778888999999999999999999999999976
No 30
>KOG4564|consensus
Probab=98.68 E-value=3.8e-07 Score=79.08 Aligned_cols=256 Identities=7% Similarity=0.014 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhcc------------ccccccch
Q psy17917 25 CTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKT------------WIHGKFLC 92 (342)
Q Consensus 25 ~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~------------~~~~~~~C 92 (342)
++.+--.++++.=.+.+.++...|++|-..|++=.||-++=++-++..+........... -..+...|
T Consensus 150 lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C 229 (473)
T KOG4564|consen 150 LYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGC 229 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhH
Confidence 444444444444444455556677888889999999999988887766655443332211 12456899
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCccccc
Q psy17917 93 TVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCS 172 (342)
Q Consensus 93 ~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 172 (342)
+....+...+..+..+.+.+=+++-+-.++--... .++.......+.|.++.++..+-.... ...+...|+
T Consensus 230 k~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai~r-----~~~~d~~CW 300 (473)
T KOG4564|consen 230 KLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAIVR-----LYLEDTGCW 300 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHhHh-----eeecccccc
Confidence 99999999999999999988877766655443221 245566788899999998887765542 111222677
Q ss_pred cCCCCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHHH
Q psy17917 173 ILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSF 252 (342)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 252 (342)
...+... ... ..-.-..+.+++-.++.+.|++.+-++-|.... . .. ..-+|++|..++++=+|
T Consensus 301 ~~~~~~~-~~W--Ii~gPi~~ai~vNf~flinIvrILv~KLr~~~~---~---~~--------~~y~K~vKaTLvLIPLf 363 (473)
T KOG4564|consen 301 DSNDTGH-IWW--IIRGPILLAILVNFIFLINIVRILVTKLRASNA---S---ET--------DQYRKLVKATLVLIPLF 363 (473)
T ss_pred ccCCCcc-eEE--EEeccHHHHHHHHHHHHHHHHHHHHHHhcCccc---c---ch--------HHHHHHHHHHHHHHHHc
Confidence 6544311 111 111123334555566666777766554332111 0 10 01236666666555444
Q ss_pred HHhhhhHHHHHhccCCCC--CchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhh
Q psy17917 253 LTCYLPITVVKTVDSEVH--FPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMC 310 (342)
Q Consensus 253 ~~~~~P~~i~~~~~~~~~--~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~ 310 (342)
-+.++ ++ ...++.. ..........+...+..+=.++|++.|+|.|.++|+.+.+
T Consensus 364 GI~~i---lf-~~~P~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r 419 (473)
T KOG4564|consen 364 GIHYI---LF-AFRPDEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSR 419 (473)
T ss_pred CCeeE---EE-EecCchHHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHh
Confidence 43321 11 1112211 1223344556777888899999999999999999998754
No 31
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=98.65 E-value=3e-05 Score=65.85 Aligned_cols=230 Identities=15% Similarity=0.204 Sum_probs=121.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCccccch-hhHHHhHhHHHHHHHhhhhhhhhH---HHhh---c--ccc
Q psy17917 16 DVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVA-AAFIVSLCIADFFFCLLVIPFSTT---RFYF---K--TWI 86 (342)
Q Consensus 16 ~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~-~~~l~~lai~dl~~~~~~~~~~~~---~~~~---~--~~~ 86 (342)
+....+..++..++.+++.++....+-.++++.-..+.+ .+++.+|..+++=.. ......+. ..+. + +..
T Consensus 17 S~~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~-~y~~~~~~~lyrsf~~~~dpC~i~ 95 (328)
T PF02117_consen 17 SWNFRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQI-SYAIIQIWSLYRSFFYSDDPCSIL 95 (328)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCeeeE
Confidence 334456666777788888888888888877777666544 456666666665442 22222222 1111 1 234
Q ss_pred ccccchhhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCC
Q psy17917 87 HGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDT 166 (342)
Q Consensus 87 ~~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~ 166 (342)
+.+..|........++.....+...++.+||.+|-..|..+++. +......+.+.+-+.++.... +.. + ....++
T Consensus 96 f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~~~-~~~~g~~l~i~~li~s~~~~~--~i~-~-~~p~~g 170 (328)
T PF02117_consen 96 FTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYSKK-SYIIGIILSILVLILSFITGF--IIY-W-DDPLDG 170 (328)
T ss_pred eecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhh-hHHHHHHHHHHHHHHHHHHee--EEE-e-CCCCcc
Confidence 56778999988888888888999999999999999888544332 222222222222223333321 121 2 223334
Q ss_pred CccccccCCCCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHH
Q psy17917 167 RLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVL 246 (342)
Q Consensus 167 ~~~~C~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
....|...+............... .+. ++..++...+++.-+|..+ + .+-. -.++=++++....++.+.
T Consensus 171 yv~~C~~~p~~s~~~~~~~~~~~~-~l~-i~~~i~s~~l~~~nkk~e~----~-~~f~----v~~Ry~~~Eni~ST~aI~ 239 (328)
T PF02117_consen 171 YVPSCFYPPKNSVNRFNIFLIVCF-VLT-IFNLIVSIFLMYYNKKKEK----K-TRFD----VNSRYQKRENINSTKAIC 239 (328)
T ss_pred ccccccCCChhHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHhc----c-cCCc----HHHHHHHHHHHHHHHHHH
Confidence 446787765544333332222211 111 1122233333333332211 1 1111 111122344456777777
Q ss_pred HHHHHHHHhhhhHHHH
Q psy17917 247 VIFLSFLTCYLPITVV 262 (342)
Q Consensus 247 ~~~~~f~~~~~P~~i~ 262 (342)
.+.+.-+++..-|.+.
T Consensus 240 ~i~~~Q~i~~~iys~~ 255 (328)
T PF02117_consen 240 IISISQFICMFIYSFG 255 (328)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777666543
No 32
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=98.63 E-value=1.2e-08 Score=83.36 Aligned_cols=128 Identities=10% Similarity=0.102 Sum_probs=3.2
Q ss_pred HHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccchhhhhhhhhhhhH
Q psy17917 25 CTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVG 104 (342)
Q Consensus 25 ~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 104 (342)
+..+-..+++++-.+.+......|++|+..+....||++++++..+..+.. ......+....++..|...+.+.+++..
T Consensus 6 i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~l 84 (242)
T PF00002_consen 6 ISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFFL 84 (242)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHHH
Confidence 334445555555555555555557777777888999999999887554432 1111111111123359999999999999
Q ss_pred HHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccC
Q psy17917 105 VSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAG 157 (342)
Q Consensus 105 ~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~ 157 (342)
++...+.+.++|-|..+..+.. ..+++.....+..|.++++........
T Consensus 85 a~f~Wm~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~ 133 (242)
T PF00002_consen 85 ASFFWMLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAV 133 (242)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeee
Confidence 9999999999999999987622 124445567788899999888766554
No 33
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=98.60 E-value=3.7e-05 Score=66.67 Aligned_cols=269 Identities=14% Similarity=0.172 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHH---HHHHhhhhhhhhHHHhh---------ccc
Q psy17917 18 TLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIAD---FFFCLLVIPFSTTRFYF---------KTW 85 (342)
Q Consensus 18 ~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~d---l~~~~~~~~~~~~~~~~---------~~~ 85 (342)
......++-.++.+++..-....+.++.+-|..|...+.+.......- ++.=+...|........ ..|
T Consensus 25 ~~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~~ 104 (365)
T PF03125_consen 25 FYIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQWW 104 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhhh
Confidence 344555555566666666666666777777777765555544443333 22223344433322110 011
Q ss_pred ccc-----------c-cchhhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhc
Q psy17917 86 IHG-----------K-FLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIP 153 (342)
Q Consensus 86 ~~~-----------~-~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~ 153 (342)
..+ + ..-.+.+++...........+.++++||.+|-.+--.|.+..+..-...++...-+.++..+..
T Consensus 105 t~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~~R~~I~~~l~~~~~~~~~~~s~~ 184 (365)
T PF03125_consen 105 TDDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKKSRRWISILLIIFSQIFSIIFSYF 184 (365)
T ss_pred ccCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 111 1 1122224444444455578899999999999988777777533222233333333444444422
Q ss_pred cccCCCCccccCCCccccccCCCCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHH
Q psy17917 154 TLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELK 233 (342)
Q Consensus 154 ~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (342)
.... ........+..+++.++..+.+..+.+.=+|..++.++.... .++=+-.++=
T Consensus 185 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~l~~~~~~-~~~YSLs~RF 240 (365)
T PF03125_consen 185 VIFN-----------------------IIPFIFHVIIFIVSNIISFVLFFILYRYNRKRLKKLENPRRK-ISKYSLSQRF 240 (365)
T ss_pred HHHH-----------------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCC-CceechhhHh
Confidence 2211 001122222333333333344444444333333343332211 0111111112
Q ss_pred hhhccchhHH---HHHHHHHHHHHhhhhHHHHHhccCCCC-CchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHh
Q psy17917 234 AKRNDMRITK---MVLVIFLSFLTCYLPITVVKTVDSEVH-FPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLM 309 (342)
Q Consensus 234 ~~~~~~~~~~---~~~~~~~~f~~~~~P~~i~~~~~~~~~-~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~ 309 (342)
+-+++.|..+ .+++....+.+.-....+....+.... ......+......+++.+=|.+-....++.|+++++.+.
T Consensus 241 Qi~ENir~l~l~~~~vi~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~ 320 (365)
T PF03125_consen 241 QIKENIRSLKLLKRVVIVIAFFIILCLIILILLSFDLSPSYRTILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFP 320 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhh
Confidence 2233334433 333333333333222222222322221 223456667788889999999999999999999998875
Q ss_pred h
Q psy17917 310 C 310 (342)
Q Consensus 310 ~ 310 (342)
.
T Consensus 321 ~ 321 (365)
T PF03125_consen 321 K 321 (365)
T ss_pred h
Confidence 4
No 34
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=97.72 E-value=0.00084 Score=56.14 Aligned_cols=156 Identities=13% Similarity=0.192 Sum_probs=95.0
Q ss_pred cchhhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCcc
Q psy17917 90 FLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLL 169 (342)
Q Consensus 90 ~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (342)
..=++..+....+.+.+.....+.++=|.+.+..|.++++. .++-.....-++.+.++..+.|.....+.+...+.+..
T Consensus 101 ~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i-~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~ 179 (307)
T PF10322_consen 101 HFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKI-CRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFP 179 (307)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHH-HHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCC
Confidence 34456677788888999999999999999999999765444 44445667777778888888877665332222222111
Q ss_pred ccccC---CCCCCchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHH
Q psy17917 170 TCSIL---PDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVL 246 (342)
Q Consensus 170 ~C~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
.-... ...................-...+++++..+++++|+.+.+.. +.++.+++.|.|+..+.+++
T Consensus 180 fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k~~l~---------~~~~s~~~~KAE~SLT~Tmi 250 (307)
T PF10322_consen 180 FGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLKSSLS---------SQRRSKQSRKAERSLTLTMI 250 (307)
T ss_pred CCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------chhhcccchhhheeHHHHHH
Confidence 11110 0111112223334444445566777788888888887652111 11222345566778888888
Q ss_pred HHHHHHHHh
Q psy17917 247 VIFLSFLTC 255 (342)
Q Consensus 247 ~~~~~f~~~ 255 (342)
++.+.++.-
T Consensus 251 ~mliP~i~n 259 (307)
T PF10322_consen 251 SMLIPYITN 259 (307)
T ss_pred HHHHHHHHH
Confidence 888777643
No 35
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=97.71 E-value=0.0094 Score=50.45 Aligned_cols=158 Identities=13% Similarity=0.037 Sum_probs=104.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhhhhHH--Hh--hc--------
Q psy17917 16 DVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTR--FY--FK-------- 83 (342)
Q Consensus 16 ~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~--~~--~~-------- 83 (342)
+.+....-....+.+.+..+.+.+.+.++..++++.+-+..-++-++++-.+.++..+...+.. .. .+
T Consensus 5 ~~e~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~ 84 (328)
T PF01534_consen 5 QEEKEFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERIL 84 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeE
Confidence 3444555566677777888888888877776666444455666666766666655443333321 00 00
Q ss_pred -cccccccchhhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCcc
Q psy17917 84 -TWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRF 162 (342)
Q Consensus 84 -~~~~~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~ 162 (342)
....+...|.+...+.+++..++...-+.+++.-+++....-.+.. -.++....-+.+|.++.+..+..+. .+..
T Consensus 85 ~~~~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~--i~~~s~yfH~~aW~iP~~~ti~vL~--~~~V 160 (328)
T PF01534_consen 85 VQDGLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEA--IEKKSSYFHLVAWGIPAVLTIAVLA--LRKV 160 (328)
T ss_pred eecCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcch--hhhhcchhhhHHhhhhHHHHHHHHH--hccc
Confidence 1123457899999999999888888888889999998865322222 2344556789999999998877666 4556
Q ss_pred ccCCCccccccCCCC
Q psy17917 163 DLDTRLLTCSILPDE 177 (342)
Q Consensus 163 ~~~~~~~~C~~~~~~ 177 (342)
+.|+-.+.|.....+
T Consensus 161 dgD~ltGiC~Vg~~~ 175 (328)
T PF01534_consen 161 DGDELTGICFVGNQN 175 (328)
T ss_pred ccccccceeEEeCCC
Confidence 677777789875444
No 36
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.58 E-value=0.009 Score=49.57 Aligned_cols=211 Identities=15% Similarity=0.165 Sum_probs=107.1
Q ss_pred HHHhhHhhhhhhc-cCCccccchhhHHHhHhHHHHHHHhhhhhhhhHHHhhccccccccchhhhhhhhhhhhHHHHHHHH
Q psy17917 33 GVVGNSLTVVALL-RCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIA 111 (342)
Q Consensus 33 g~~~N~~vl~~i~-~~~~~~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~ 111 (342)
+.+|..+.+.-+. +-|..+.++-.++.-+.++++...+-.+...-- ..+| -+..|.+..-+.......-.....
T Consensus 4 s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INaiIW~~n---~~~~--~~~wCDI~~kl~~~~~~g~~~a~l 78 (283)
T PF02076_consen 4 SFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINAIIWRDN---DINW--WPVWCDISTKLIIGSSVGIPAASL 78 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhhhhcCCC---CCcc--CceeeeehHHHHHHHHHHHHHHHH
Confidence 3444444443332 223334577788999999998886433321110 0122 237899987777666655444444
Q ss_pred HHHHHhhheeccccc--ccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCCccccccCCCCCCchhHHHHHHH
Q psy17917 112 MITINRYIMIAHHQM--YNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLI 189 (342)
Q Consensus 112 ~iaidRy~ai~~p~~--~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~ 189 (342)
+|+-.-|. |..+.+ ..+..++|+..+=..+++.++++.....+..+.++++...+. .|....... . ....+
T Consensus 79 cI~r~L~~-I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~~-GC~~~~~~s--~---~~~~l 151 (283)
T PF02076_consen 79 CIMRRLYR-IASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVEDV-GCYPAIYPS--W---PTIFL 151 (283)
T ss_pred HHHHHHHH-HhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEeccc-CCccCCCCC--H---HHHHH
Confidence 44433332 333321 112224667777788888888888877777666666654432 354322221 1 11111
Q ss_pred hhhhhhHH---HHHHHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHHHHHHHHHHHhhhhHHHHHhc
Q psy17917 190 GFVIPCVI---IILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTV 265 (342)
Q Consensus 190 ~~~~p~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~ 265 (342)
...-|.++ ..+.-+..++...|++++.++.-+..+++-+ ..|..| +..+.++.+++.+|..+..+.
T Consensus 152 ~~iwp~i~~lia~vYa~lt~~~f~~rr~~f~~~l~~s~s~l~---------~~Rf~R-L~~la~~~i~~~~P~~i~~~v 220 (283)
T PF02076_consen 152 FIIWPPIFSLIAAVYAILTLRRFIRRRKQFRDILSSSNSGLN---------TSRFFR-LLALALVIILIYLPLSIYYLV 220 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc---------HHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 11222211 2222223444444555544433222211111 113334 667778888889998887765
No 37
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=97.46 E-value=7.2e-05 Score=54.74 Aligned_cols=102 Identities=12% Similarity=0.038 Sum_probs=69.3
Q ss_pred hHHHhHhHHHHHHHhhhhhhhhHHHhhcccccc---ccchhhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccch
Q psy17917 56 AFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHG---KFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYK 132 (342)
Q Consensus 56 ~~l~~lai~dl~~~~~~~~~~~~~~~~~~~~~~---~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~ 132 (342)
.++.++++++++..+............++..+. +..-+......+++.....+...+|++||-..|.+|.+...+++
T Consensus 5 vYI~~M~i~gi~~~~~~~v~~~~~~~~~~~~Y~~yr~~~G~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs 84 (153)
T PF03383_consen 5 VYIYNMIICGIIDKFFIFVDFWIPLFLPDEGYEEYRQFFGKEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFS 84 (153)
T ss_pred EEEeHHHHhhHHHHHHHHhhhhhhhccChhHHHHHHHHhCCEEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccc
Confidence 456677777777665433322222222211111 12233345566777888899999999999999999998777889
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccC
Q psy17917 133 PVWIGCMIAFCYALSFGMQIPTLAG 157 (342)
Q Consensus 133 ~~~~~~~i~~~w~~~~~~~~~~~~~ 157 (342)
.++.++.+.+..++.+..-+.+++.
T Consensus 85 ~~kl~~YC~~i~i~~~i~LlIPy~S 109 (153)
T PF03383_consen 85 DKKLWIYCGIIAILSFISLLIPYFS 109 (153)
T ss_pred cchhHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999988888888777666664
No 38
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=97.00 E-value=0.00093 Score=42.89 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=49.1
Q ss_pred chhHHHHHHHHHHHHHhhh-hHHHHHhccC--CC--CCchHHHHHHHHHHhhhchhhhHHhhcchhHH
Q psy17917 239 MRITKMVLVIFLSFLTCYL-PITVVKTVDS--EV--HFPGLHVISYIFLYLSACINPIIYVIMNKQYR 301 (342)
Q Consensus 239 ~~~~~~~~~~~~~f~~~~~-P~~i~~~~~~--~~--~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R 301 (342)
+|.++.+++-.++|+++|+ |...-.+... .. ...++..+...+..+++.+|-++|.++-+..|
T Consensus 8 ~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw~ 75 (76)
T PF11970_consen 8 RRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPWR 75 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeecccCC
Confidence 4788999999999999999 8776554332 22 23467888899999999999999998766544
No 39
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.98 E-value=0.61 Score=37.05 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=40.0
Q ss_pred ccccccchhhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccch
Q psy17917 85 WIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYK 132 (342)
Q Consensus 85 ~~~~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~ 132 (342)
...+...++.......+....++..-..+++||++|....-+|.+..+
T Consensus 78 LiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~ 125 (236)
T PF02175_consen 78 LIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRT 125 (236)
T ss_pred EEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCce
Confidence 345667888888888899999999999999999999998777776543
No 40
>KOG4289|consensus
Probab=95.61 E-value=0.25 Score=49.04 Aligned_cols=176 Identities=15% Similarity=0.227 Sum_probs=96.4
Q ss_pred cccchhhhhhhhhhhhHHHHHHHHHHHHHhhheecccccccccchhhHHHHHHHHHHHHHHHhhhccccCCCCccccCCC
Q psy17917 88 GKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTR 167 (342)
Q Consensus 88 ~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~ 167 (342)
+...|.+...+..+...+.+.++.+-+++-|-+..-....... ....+..|.++.++....+.. +
T Consensus 2222 nq~~CtvvailLhf~~~stFaWlfl~gLhlYRml~e~v~tg~m------rfy~~vGwgvPa~itglavgl-------d-- 2286 (2531)
T KOG4289|consen 2222 NQFYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLTENVDTGPM------RFYYLVGWGVPALITGLAVGL-------D-- 2286 (2531)
T ss_pred CchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCce------eEEEEeecchhhheeeeeecc-------c--
Confidence 6789999999999999998888888888777666542111111 112246788777766544332 1
Q ss_pred ccccccCCCCCCchhHHHHHHHhhhhhhHHHHH--HHHHHHHHHHhcHHHHhhccccchhhhhHHHHHhhhccchhHHHH
Q psy17917 168 LLTCSILPDENGRSSKRALFLIGFVIPCVIIIL--CYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMV 245 (342)
Q Consensus 168 ~~~C~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
..|+...... .+-.+..|+.+.++ .|..+....-...++.+. -.++...+.++..
T Consensus 2287 -DfCwlS~h~~--------LiWsfagPigl~i~ms~~~~~lsa~vSc~~k~~~--------------f~kK~~v~~lq~~ 2343 (2531)
T KOG4289|consen 2287 -DFCWLSPHDT--------LIWSFAGPIGLVILMSFYAAALSARVSCHKKYQV--------------FVKKGNVSVLQHS 2343 (2531)
T ss_pred -ceeecccchh--------eeeeecccceeeehHHHHHHHHHHHHhhhhhhee--------------eeeccchhhhHHH
Confidence 4676543221 11123334333322 333333222111111110 1122233455666
Q ss_pred HHHHHHHHHhhhhHHHHHhccCCCCCchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHH
Q psy17917 246 LVIFLSFLTCYLPITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYK 305 (342)
Q Consensus 246 ~~~~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~ 305 (342)
++++++.-.+|+-.. +......-.++++...+..+...+--++|+..|.+.|++.+
T Consensus 2344 fl~llllsatwl~~l----l~vn~~~l~fhyl~a~~~~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2344 FLLLLLLSATWLLGL----LAVNPDPLEFHYLFASIIGLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred HHHHHHHHHHHHHHH----HhcCCchHHHHHHHHHHHHhhhHHHHHHHhhhcHHHHHhhc
Confidence 666666666665332 23333333456666666666677777788889999999887
No 41
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=95.32 E-value=0.43 Score=36.89 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhHhhhhhhccCCcc--ccchhhHHHhHhHHHHHHHhhhhhhhhHHHhh------c-cccccccchhhh
Q psy17917 25 CTVIIAVVGVVGNSLTVVALLRCPKI--RNVAAAFIVSLCIADFFFCLLVIPFSTTRFYF------K-TWIHGKFLCTVV 95 (342)
Q Consensus 25 ~~~~~~~~g~~~N~~vl~~i~~~~~~--~~~~~~~l~~lai~dl~~~~~~~~~~~~~~~~------~-~~~~~~~~C~~~ 95 (342)
.-.++-..+.+.+.+++..+.++|++ +-...+.. +.+..-++.+|..+...+. + +-...-..|.+.
T Consensus 46 ~e~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTIvF-----aT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCSfl 120 (226)
T PF06681_consen 46 VEFIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTIVF-----ATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCSFL 120 (226)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeEEE-----eeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeehHH
Confidence 33456666777777777667666653 21112221 2222223455544433321 1 122345788887
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhheeccccc
Q psy17917 96 PFIQYSNVGVSLSCIAMITINRYIMIAHHQM 126 (342)
Q Consensus 96 ~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~ 126 (342)
.-.......+.....+++|+|||+.|++-.+
T Consensus 121 k~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 121 KNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred HhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 6655555555556667899999999987543
No 42
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=75.48 E-value=12 Score=24.81 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=10.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHH
Q psy17917 189 IGFVIPCVIIILCYAKIFWVVR 210 (342)
Q Consensus 189 ~~~~~p~~~~~~~~~~i~~~l~ 210 (342)
+.++..++++++.-.+|+..-+
T Consensus 21 ~L~i~~FiILLIi~~~IW~~~r 42 (121)
T PF10669_consen 21 FLFIVVFIILLIITKSIWHDSR 42 (121)
T ss_pred HHHHHHHHHHHHHHHHHhhhHH
Confidence 3333444444554555554333
No 43
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=63.53 E-value=29 Score=28.00 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=19.4
Q ss_pred ccccchhhhhhhhhhhhHHHHHHHHHHHHHhhhee
Q psy17917 87 HGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMI 121 (342)
Q Consensus 87 ~~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai 121 (342)
.++..|....+....+.....-.+.+ =.-|-..+
T Consensus 51 ~s~~~C~~r~~~~~l~f~l~~~~ll~-K~~ri~~i 84 (238)
T PF00003_consen 51 PSDILCTLRRWLFSLGFTLIFSALLA-KTWRIYRI 84 (238)
T ss_pred cCCcEEEEeeeeeeeehHhhhhHHHH-hhhheeee
Confidence 35678998887766665544444433 33343333
No 44
>KOG1056|consensus
Probab=61.67 E-value=1.3e+02 Score=29.78 Aligned_cols=43 Identities=12% Similarity=0.430 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhhhccCCcc-------ccchhhHHHhHhH
Q psy17917 21 ITAVCTVIIAVVGVVGNSLTVVALLRCPKI-------RNVAAAFIVSLCI 63 (342)
Q Consensus 21 ~~~~~~~~~~~~g~~~N~~vl~~i~~~~~~-------~~~~~~~l~~lai 63 (342)
..++..+++.++|++.-..++.++.+.... |...++++..+.+
T Consensus 560 ~~~i~~l~lA~LGii~tl~vlv~fvr~~~TpvVkasgreLsyiLL~gi~l 609 (878)
T KOG1056|consen 560 PWSIAPLLLAILGIIATLFVLVLFVRYNDTPVVKASGRELSYILLLGIFL 609 (878)
T ss_pred cccHHHHHHHHHHHHHHHHhheeEEEecCCceEEecCcEehHHHHHHHHH
Confidence 455777888889999888888888776543 3444566655544
No 45
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=61.64 E-value=1.1e+02 Score=26.76 Aligned_cols=47 Identities=13% Similarity=-0.010 Sum_probs=28.3
Q ss_pred CCCCCchHHHHHHHHHHhhhchhhhHHhhcchhHHHHHHHHHhhhhh
Q psy17917 267 SEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVLMCEKN 313 (342)
Q Consensus 267 ~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~~~~~~~~~~ 313 (342)
.....+....+...+.-....+||++....--..-+..|+-+.....
T Consensus 274 ~~~~~~~~~~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~ 320 (365)
T PF03125_consen 274 SFDLSPSYRTILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFP 320 (365)
T ss_pred HHccChhHHHHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhh
Confidence 44444445555555555666778888777666666666665544443
No 46
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=59.79 E-value=99 Score=25.54 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHHHHHHHHhhheecccc
Q psy17917 99 QYSNVGVSLSCIAMITINRYIMIAHHQ 125 (342)
Q Consensus 99 ~~~~~~~s~~~~~~iaidRy~ai~~p~ 125 (342)
......+--..+.++|++|++--..|.
T Consensus 89 l~i~~~v~~lllsLLAIqRFllyFfP~ 115 (267)
T PF10325_consen 89 LYIITQVFHLLLSLLAIQRFLLYFFPS 115 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 334444555678899999999999996
No 47
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=51.93 E-value=22 Score=25.38 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhHhhhhhhccCCc
Q psy17917 23 AVCTVIIAVVGVVGNSLTVVALLRCPK 49 (342)
Q Consensus 23 ~~~~~~~~~~g~~~N~~vl~~i~~~~~ 49 (342)
.++.++.+++|++. ++.+.+.|.+|
T Consensus 69 Ii~gv~aGvIg~Il--li~y~irR~~K 93 (122)
T PF01102_consen 69 IIFGVMAGVIGIIL--LISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHS-
T ss_pred hhHHHHHHHHHHHH--HHHHHHHHHhc
Confidence 33333444444442 33444444333
No 48
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=40.69 E-value=95 Score=19.68 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=16.0
Q ss_pred HHHHHHhhhhhhHHH-HHHHHHHHHHHHhcHH
Q psy17917 184 RALFLIGFVIPCVII-ILCYAKIFWVVRSSEK 214 (342)
Q Consensus 184 ~~~~~~~~~~p~~~~-~~~~~~i~~~l~~~~~ 214 (342)
.+..++..+.|++++ .++...+.+.+.+..+
T Consensus 22 Fl~~vll~LtPlfiisa~lSwkLaK~ie~~er 53 (74)
T PF15086_consen 22 FLTTVLLILTPLFIISAVLSWKLAKAIEKEER 53 (74)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566675544 4445555555554433
No 49
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=39.37 E-value=29 Score=23.60 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHhcHHHHhh
Q psy17917 193 IPCVIIILCYAKIFWVVRSSEKRLRR 218 (342)
Q Consensus 193 ~p~~~~~~~~~~i~~~l~~~~~~~~~ 218 (342)
.+++++.++|..+++--+|+.++.++
T Consensus 14 ~~vl~~~ifyFli~RPQrKr~K~~~~ 39 (97)
T COG1862 14 PLVLIFAIFYFLIIRPQRKRMKEHQE 39 (97)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 33555667777777666665555444
No 50
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=34.88 E-value=99 Score=19.92 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=15.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcHHH
Q psy17917 190 GFVIPCVIIILCYAKIFWVVRSSEKR 215 (342)
Q Consensus 190 ~~~~p~~~~~~~~~~i~~~l~~~~~~ 215 (342)
++++|+++.+++-+-++..++..+|+
T Consensus 5 fl~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 5 FLAIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45567776666666666555544443
No 51
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=33.75 E-value=97 Score=19.92 Aligned_cols=46 Identities=13% Similarity=0.333 Sum_probs=32.8
Q ss_pred HHHHHHhhHhhhhhhccCCccccchhhHHHhHhHHHHHHHhhhhhh
Q psy17917 30 AVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPF 75 (342)
Q Consensus 30 ~~~g~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~dl~~~~~~~~~ 75 (342)
.++|+++=...+-++..+.+.++-.++=.+|.+++.++....--|+
T Consensus 4 ~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~ 49 (78)
T PF09882_consen 4 IIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPM 49 (78)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcH
Confidence 4556666666666677777778888888899999998886544443
No 52
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=33.46 E-value=84 Score=19.13 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHHhh
Q psy17917 240 RITKMVLVIFLSFLTCY 256 (342)
Q Consensus 240 ~~~~~~~~~~~~f~~~~ 256 (342)
+.-.++..+.+++++-|
T Consensus 37 ~~~~i~~~~~i~~l~v~ 53 (59)
T PF09889_consen 37 KTQYIFFGIFILFLAVW 53 (59)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 53
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=31.68 E-value=2.1e+02 Score=20.92 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHH
Q psy17917 239 MRITKMVLVIFLSFLTCYLPITVV 262 (342)
Q Consensus 239 ~~~~~~~~~~~~~f~~~~~P~~i~ 262 (342)
++...........|++++.-+...
T Consensus 35 r~~Ml~a~~ls~lFlv~Yl~~~~~ 58 (133)
T PF04238_consen 35 RKLMLTAFVLSALFLVSYLYYHFL 58 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366677788888888888876655
No 54
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=28.37 E-value=1.4e+02 Score=17.95 Aligned_cols=21 Identities=33% Similarity=0.203 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhHhhhhh
Q psy17917 23 AVCTVIIAVVGVVGNSLTVVA 43 (342)
Q Consensus 23 ~~~~~~~~~~g~~~N~~vl~~ 43 (342)
.+++.++.+..+-|-+++++.
T Consensus 26 ~~l~PiL~v~~Vg~YGF~VWm 46 (56)
T PF06796_consen 26 VVLFPILAVAFVGGYGFIVWM 46 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666776654
No 55
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=27.39 E-value=78 Score=18.94 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhHhhhhhhcc
Q psy17917 25 CTVIIAVVGVVGNSLTVVALLR 46 (342)
Q Consensus 25 ~~~~~~~~g~~~N~~vl~~i~~ 46 (342)
+.+++.+--++||+.++---.+
T Consensus 7 lIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 7 LIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHHHHhHHHHHHHhcc
Confidence 3344455557899988765544
No 56
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=26.77 E-value=1.2e+02 Score=19.91 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhcHHHH
Q psy17917 196 VIIILCYAKIFWVVRSSEKRL 216 (342)
Q Consensus 196 ~~~~~~~~~i~~~l~~~~~~~ 216 (342)
+++.+.|..+++--+|+.++.
T Consensus 10 ~~~~i~yf~~~rpqkk~~k~~ 30 (82)
T PF02699_consen 10 IIFVIFYFLMIRPQKKQQKEH 30 (82)
T ss_dssp HHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhhheecHHHHHHHHH
Confidence 444555655555444444433
No 57
>PRK09458 pspB phage shock protein B; Provisional
Probab=25.77 E-value=1.1e+02 Score=19.62 Aligned_cols=26 Identities=31% Similarity=0.407 Sum_probs=16.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcHHH
Q psy17917 190 GFVIPCVIIILCYAKIFWVVRSSEKR 215 (342)
Q Consensus 190 ~~~~p~~~~~~~~~~i~~~l~~~~~~ 215 (342)
++++|+++.+++-.-++..++-..|+
T Consensus 5 fl~~PliiF~ifVaPiWL~LHY~sk~ 30 (75)
T PRK09458 5 FLAIPLTIFVLFVAPIWLWLHYRSKR 30 (75)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhcccc
Confidence 45567777777777777666655443
No 58
>KOG4220|consensus
Probab=24.50 E-value=4.9e+02 Score=23.50 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=43.5
Q ss_pred hhhccchhHHHHHHHHHHHHHhhhhHHHHHhc--cCC-----------CCCchHH-HHHHHHHHhhhchhhhHHhhcchh
Q psy17917 234 AKRNDMRITKMVLVIFLSFLTCYLPITVVKTV--DSE-----------VHFPGLH-VISYIFLYLSACINPIIYVIMNKQ 299 (342)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~--~~~-----------~~~~~~~-~~~~~l~~~~~~~np~iy~~~~~~ 299 (342)
.+|..+|+..|+..--++-++.|.|..+..=+ +.. ...+.+. ..+..-.++.-.+--++|.-..++
T Consensus 140 akRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyre 219 (503)
T KOG4220|consen 140 AKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRE 219 (503)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeecCceeehhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34445577788888888888999998776432 100 0011111 112222344455566788877777
Q ss_pred HHHHHHHHH
Q psy17917 300 YRVAYKTVL 308 (342)
Q Consensus 300 ~R~~~~~~~ 308 (342)
-|+..+++-
T Consensus 220 t~kR~k~~~ 228 (503)
T KOG4220|consen 220 TRKRQKELA 228 (503)
T ss_pred HHHHHHhhh
Confidence 777776653
No 59
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=24.21 E-value=4.1e+02 Score=21.90 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=14.1
Q ss_pred HHhhHhhhhhhccCCccccchhhHHHhHhHH
Q psy17917 34 VVGNSLTVVALLRCPKIRNVAAAFIVSLCIA 64 (342)
Q Consensus 34 ~~~N~~vl~~i~~~~~~~~~~~~~l~~lai~ 64 (342)
.+.+......+.+++..+.....+..++.+-
T Consensus 43 ~~~~~~~~~~l~~~~~~h~~~~l~~~~l~l~ 73 (257)
T PF10192_consen 43 SIISIYSIQSLKKRGLMHPVYKLFSAALLLQ 73 (257)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3334434444444444444445555555443
No 60
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=24.11 E-value=4.4e+02 Score=22.27 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhheeccc
Q psy17917 104 GVSLSCIAMITINRYIMIAHH 124 (342)
Q Consensus 104 ~~s~~~~~~iaidRy~ai~~p 124 (342)
..-+|.++.+.+||++...-.
T Consensus 51 ~glvwgl~I~~lDR~ivss~~ 71 (301)
T PF14362_consen 51 FGLVWGLVIFNLDRFIVSSIR 71 (301)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 347788999999999987554
No 61
>PF15102 TMEM154: TMEM154 protein family
Probab=23.14 E-value=19 Score=26.40 Aligned_cols=19 Identities=21% Similarity=0.557 Sum_probs=9.5
Q ss_pred HHhhhhhhHHHHHHHHHHH
Q psy17917 188 LIGFVIPCVIIILCYAKIF 206 (342)
Q Consensus 188 ~~~~~~p~~~~~~~~~~i~ 206 (342)
++..++|.++.+++...++
T Consensus 58 iLmIlIP~VLLvlLLl~vV 76 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVV 76 (146)
T ss_pred EEEEeHHHHHHHHHHHHHH
Confidence 5566677544433333333
No 62
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=22.38 E-value=2.4e+02 Score=18.48 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=10.6
Q ss_pred HHHHHhhhhhhHHHHHHHHH
Q psy17917 185 ALFLIGFVIPCVIIILCYAK 204 (342)
Q Consensus 185 ~~~~~~~~~p~~~~~~~~~~ 204 (342)
++.++..+.|+.+..+.|..
T Consensus 23 I~s~l~Cc~PlGi~Ai~~s~ 42 (82)
T PF04505_consen 23 IFSTLCCCWPLGIVAIVYSS 42 (82)
T ss_pred HHHHHHHHhhHHHHHheech
Confidence 33334445576666665554
No 63
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=22.35 E-value=65 Score=22.69 Aligned_cols=6 Identities=17% Similarity=0.478 Sum_probs=2.3
Q ss_pred hhHHHH
Q psy17917 194 PCVIII 199 (342)
Q Consensus 194 p~~~~~ 199 (342)
|+++++
T Consensus 8 ~~vv~~ 13 (113)
T PRK06531 8 MFVVML 13 (113)
T ss_pred HHHHHH
Confidence 333333
No 64
>PHA03234 DNA packaging protein UL33; Provisional
Probab=22.16 E-value=1.1e+02 Score=26.37 Aligned_cols=34 Identities=3% Similarity=0.132 Sum_probs=25.2
Q ss_pred HHhhhchhhhHHhhcchhHHHHHHHHHhhhhhhh
Q psy17917 282 LYLSACINPIIYVIMNKQYRVAYKTVLMCEKNRL 315 (342)
Q Consensus 282 ~~~~~~~np~iy~~~~~~~R~~~~~~~~~~~~~~ 315 (342)
..+||.+-.+.---+.+++++.+++..||++.+.
T Consensus 292 sclNPiIY~f~~~~FR~~~~~~~~~~~~~~~~~~ 325 (338)
T PHA03234 292 CFSNPLVYAFTGGDFRLRFTACFQDFFKCNLCNS 325 (338)
T ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHhhhhhccc
Confidence 4456777777777788999999999887764443
No 65
>KOG2575|consensus
Probab=21.81 E-value=97 Score=27.37 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.4
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHH
Q psy17917 238 DMRITKMVLVIFLSFLTCYLPITVV 262 (342)
Q Consensus 238 ~~~~~~~~~~~~~~f~~~~~P~~i~ 262 (342)
-.+..+..++++.+|.++|.|+...
T Consensus 254 f~ri~~ia~~Vv~TF~iiw~P~~~~ 278 (510)
T KOG2575|consen 254 FARIIKIALAVVGTFVIIWLPFLLS 278 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3478889999999999999998754
No 66
>KOG4349|consensus
Probab=21.68 E-value=3.1e+02 Score=19.55 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=11.0
Q ss_pred cccccccchhhhhhhhhhhh
Q psy17917 84 TWIHGKFLCTVVPFIQYSNV 103 (342)
Q Consensus 84 ~~~~~~~~C~~~~~~~~~~~ 103 (342)
...-+...|...+..++++.
T Consensus 112 ~~~ms~~y~~i~G~~QT~~i 131 (143)
T KOG4349|consen 112 KNAVSTWYCAIMGIIQTLLI 131 (143)
T ss_pred cCCccHHHHHHHHHHHHHHH
Confidence 33445666766666555443
No 67
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=20.77 E-value=1.5e+02 Score=15.74 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhh
Q psy17917 23 AVCTVIIAVVGVVGN 37 (342)
Q Consensus 23 ~~~~~~~~~~g~~~N 37 (342)
.++++.++++|.+.|
T Consensus 12 V~ffv~LFifGflsn 26 (36)
T PF02532_consen 12 VIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccccCC
Confidence 344555666676665
No 68
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=20.29 E-value=3.8e+02 Score=20.01 Aligned_cols=51 Identities=6% Similarity=0.032 Sum_probs=27.2
Q ss_pred HHHhhhhHHHHHhccCCCCCchHHHHHHHHHHhhhchhhhHHhhcchhHHHHH
Q psy17917 252 FLTCYLPITVVKTVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAY 304 (342)
Q Consensus 252 f~~~~~P~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~~R~~~ 304 (342)
..+.|....+........... .....-++..-|.+.++...+-++.+||.=
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~lp~vaii~~~LA~r~I~kDE 140 (149)
T PF14126_consen 90 LNVGLYGLFAYFSLNLSGELG--ATFSFGIGFFLPLVAIIFLWLANRAIKKDE 140 (149)
T ss_pred HHHHHHHHHHHHHHHhccccc--chhhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334555555554443332221 122233445557777788888888887653
No 69
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=20.20 E-value=86 Score=20.69 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhcHHHH
Q psy17917 198 IILCYAKIFWVVRSSEKRL 216 (342)
Q Consensus 198 ~~~~~~~i~~~l~~~~~~~ 216 (342)
+.+.|..+++--+|+.++.
T Consensus 13 ~~i~yf~~~rpqkK~~k~~ 31 (84)
T TIGR00739 13 FLIFYFLIIRPQRKRRKAH 31 (84)
T ss_pred HHHHHHheechHHHHHHHH
Confidence 4455666655444444443
Done!