RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17917
(342 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 136 bits (344), Expect = 3e-38
Identities = 69/260 (26%), Positives = 117/260 (45%), Gaps = 17/260 (6%)
Query: 42 VALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYS 101
+ +LR K+R F+++L +AD F L + P++ W G LC +V F+
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60
Query: 102 NVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGR 161
N S+ + I+I+RY+ I H Y I P +I + L+ + +P L W R
Sbjct: 61 NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120
Query: 162 FDLDTRLLTCSILPDENGRSSKRAL--FLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRH 219
+ + TC I E L L+GFV+P ++I++CY I +R +
Sbjct: 121 TVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQ 180
Query: 220 TSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVDSEVHFPGLHVISY 279
+S + + KM+LV+ + F+ C+LP +V +DS ++
Sbjct: 181 ARAKRS---------SSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPT 231
Query: 280 IFL------YLSACINPIIY 293
L Y+++C+NPIIY
Sbjct: 232 ALLITLWLAYVNSCLNPIIY 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 82.1 bits (203), Expect = 1e-17
Identities = 79/308 (25%), Positives = 132/308 (42%), Gaps = 48/308 (15%)
Query: 21 ITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRF 80
I V I G+VGN + + L + KI+ ++++L ++D F ++ +PF +
Sbjct: 42 ILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLF-VMTLPFQIYYY 99
Query: 81 YFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMI 140
W G+F C +V + Y S++ I +++++RYI I H N I V G ++
Sbjct: 100 ILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKI-NTVKYGYIV 158
Query: 141 AFC-YALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFL------IGFVI 193
+ + +S P L + D +T L C + + + K LF+ IG +I
Sbjct: 159 SLVIWIISIIETTPILFVYTTKKDHET--LICCMFYNNKTMNWK--LFINFEINIIGMLI 214
Query: 194 PCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFL 253
P I++ CY+KI I K K K K+ K+VL+I + F+
Sbjct: 215 PLTILLYCYSKIL----------------ITLKGINKSKKNKKA----IKLVLIIVILFV 254
Query: 254 TCYLPITVVKTVDSEVH----FPGLHVISYIFLYLSA---------CINPIIYVIMNKQY 300
+LP V V S +H G + YI L CINP+IY +++ +
Sbjct: 255 IFWLPFNVSVFVYS-LHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFF 313
Query: 301 RVAYKTVL 308
K L
Sbjct: 314 NKHKKKSL 321
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 58.1 bits (140), Expect = 2e-09
Identities = 70/313 (22%), Positives = 132/313 (42%), Gaps = 66/313 (21%)
Query: 27 VIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWI 86
+II ++G+ GN+ ++ +L C KI+ + +I +L I+D F ++ PF F WI
Sbjct: 106 IIIFILGLFGNAA-IIMILFCKKIKTITDIYIFNLAISDLIF-VIDFPFIIYN-EFDQWI 162
Query: 87 HGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAF-CYA 145
G F+C V+ Y ++ I +++I+RY I + + Y+ IG ++ +
Sbjct: 163 FGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQK-YRTFNIGIILCIISWI 221
Query: 146 LSFGMQIPTLAGQWGRFDLDTRLLT------------CSILPDEN-------GRSSKRAL 186
LS + P + F+ + + C+++ D GR + +
Sbjct: 222 LSLIITSPA----YFIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEI 277
Query: 187 FLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVL 246
++G IP +I CY KI K++ K K+ K+ +V
Sbjct: 278 NILGMFIPIIIFAFCYIKIIL--------------KLKQLKKSKKTKSII-------IVS 316
Query: 247 VIFLSFLTCYLPITVVKTVDSEVHFPGLHVI-----------SYIFLYLSA------CIN 289
+I + L C++P+ +V + F G + I Y + A CIN
Sbjct: 317 IIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCIN 376
Query: 290 PIIYVIMNKQYRV 302
P+IY ++ + +R+
Sbjct: 377 PLIYTLIGENFRM 389
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 50.7 bits (122), Expect = 3e-07
Identities = 44/253 (17%), Positives = 94/253 (37%), Gaps = 32/253 (12%)
Query: 62 CIADFFFCLLVIPFSTTRFYFKTWI------HGKFLCTVVPFIQYSNVGVSLSCIAMITI 115
CIAD L+ + F W + + I Y + + + I+ ++
Sbjct: 41 CIADI--ITLLNYYFGAMFPKIGWFRDFYFNYQHYYAAAYYNIAYYTLYIRCTGISFLST 98
Query: 116 NRY-IMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSIL 174
NRY + I++ + +I + + + L +D + +
Sbjct: 99 NRYLAICFPISRLTKIWQSARLWKIILIYWLPGLLISLVVLKNTDIYYDNEENMPVV-AD 157
Query: 175 PDENGRSSKRALFLIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKA 234
D R + AL + C+ I+ Y +F+V+R K+ +++ K+
Sbjct: 158 KDVIQRFTLIALIFVFVT--CIYCIIAYGALFFVIR---KKFNKNSQTKS--------KS 204
Query: 235 KRNDMRITKMVLVIFLSFLT--CYLPITVVK----TVDSEVHFPGLHVISYIFLYLSACI 288
+ ++R+ V ++ L+FL + ++ D + L+ I+ L + I
Sbjct: 205 LKREVRLAFQVFILVLAFLIILIFYILSNYFSQTQNTDPIFYLRALYPIASGLL---SYI 261
Query: 289 NPIIYVIMNKQYR 301
NP + +I N+ R
Sbjct: 262 NPYLLLIFNRDLR 274
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 43.7 bits (103), Expect = 6e-05
Identities = 65/320 (20%), Positives = 133/320 (41%), Gaps = 50/320 (15%)
Query: 24 VCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFK 83
V +++ + G++GN L V+A+L + V ++ ++ ++D + PF
Sbjct: 33 VFYILLFIFGLIGNVL-VIAVLIVKRFMFVVDVYLFNIAMSDLML-VFSFPF-IIHNDLN 89
Query: 84 TWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFC 143
WI G+F+C +V + + ++ + +I+I+RYI++ + T K I +
Sbjct: 90 EWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVN----ATKIKNKSISLSVLLS 145
Query: 144 YALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALF-----LIGFVIPCVII 198
A I ++ + +T L I D + S A F + G VIP +I+
Sbjct: 146 VAAWVCSVILSMPAMVLYYVDNTDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIIL 205
Query: 199 ILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLP 258
I CY+KI + +++ + + + R K++L + + ++P
Sbjct: 206 IYCYSKILYTLKNCKNKNK---------------------TRSIKIILTVVTFTVVFWVP 244
Query: 259 ITVVKTVDSE----------VHFP----GLHVISYIFLYLSACINPIIYVIMNKQYRVAY 304
+V ++S HF + + I ++ C+NPIIY + K ++ +
Sbjct: 245 FNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELIS-FVHCCVNPIIYAFVGKNFKKVF 303
Query: 305 KTVLMCEKNRLLSSIRRSGT 324
K + C N + + S
Sbjct: 304 KNMF-CRTNNIF-IRQSSNN 321
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 42.2 bits (100), Expect = 2e-04
Identities = 53/282 (18%), Positives = 108/282 (38%), Gaps = 28/282 (9%)
Query: 30 AVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGK 89
+V+G+ GN + ++ + K+R+ + I C+AD I F F +
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFVVLLFTGTQLTRNE 60
Query: 90 -FLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTI--YKPVWIGCMIAFCYAL 146
FL + + + MI I+R I + Y + K ++I + Y+
Sbjct: 61 CFLIIIPYIFGQT---AQSPLMLMIGIDRLIAVKFPIFYRLLSSSKYLFIQLIFPVIYSS 117
Query: 147 SFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKRALFLIGFVIPCVIIILCYAKIF 206
+ G R D ++ C+ NG + + +F + VI VI+++ Y +
Sbjct: 118 FI-----LVYGFLERD--DETIIVCAPPLALNGTAFR--IFTLSSVIINVIVLIVYIILI 168
Query: 207 WVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVD 266
+ + + T+ SKK K L+ +++ IF F + + +
Sbjct: 169 IIFKKKGQ-----TTNSDSKKVFKSLQ--------VTVIIFIFGWFTSTIANTVFLLLTE 215
Query: 267 SEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTVL 308
+ + + IF+ LS N + + +YR A++ +
Sbjct: 216 DGEVENIIQMYAGIFVNLSFSQNFFVTYWRSSEYRKAFRRLW 257
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 36.0 bits (84), Expect = 0.018
Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 27 VIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLL----VIPFSTTRFYF 82
+I++ G++ N L L+ P ++N + I++ C + V+P + F
Sbjct: 1 FLISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDLSF 60
Query: 83 KTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAF 142
+ + ++ Y +S +I++NR+ + Y I+ +I F
Sbjct: 61 LPELLNSHIGGLILLGLYE---ISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIIITF 117
Query: 143 CYALSFGM 150
+ ++ +
Sbjct: 118 IWIIAIII 125
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 32.4 bits (74), Expect = 0.095
Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 202 YAKIFWVVRSSEKRLRRHTSKI--QSKKDQKELKAKRNDMRITKMVLVIFLSFL 253
+I + + +I +++K+ + +K + ++ + L FL+ L
Sbjct: 56 AQEIL---EEAREEAEEEAEEILAEAEKEASAILSKAAEGKVVEAALSEFLAIL 106
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor
Srw. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srw is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srw do not appear to be
under as strong an adaptive evolutionary pressure as
those of Srz.
Length = 317
Score = 32.6 bits (75), Expect = 0.23
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 25/147 (17%)
Query: 176 DENGRSSKRALFLIGFV---IPCVI-IILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKE 231
D +G K L + G V IPC++ IL I + ++ + R + S ++ +
Sbjct: 183 DNDGLLLKIYLLIDGIVSKIIPCILLPILTILLIIELRKAKKSR-----KNLSSSSNKSD 237
Query: 232 LKAKRNDMRITKMVLVIFLSFLTCYLPITVVKTVDSEVH-FPGLHVISY-------IFLY 283
R TK+V+ + +SF P+ + + + PG+ +I + L
Sbjct: 238 --------RTTKLVIFMTISFFIAEFPLGISYIIQFFFYDDPGIRLILTYLSVIFSLLLT 289
Query: 284 LSACINPIIYVIMNKQYRVAYKTVLMC 310
++A + +I +M+ QYR K + C
Sbjct: 290 INAISHCLICFLMSSQYRKTAKKLFGC 316
>gnl|CDD|218544 pfam05296, TAS2R, Mammalian taste receptor protein (TAS2R). This
family consists of several forms of mammalian taste
receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled
receptors expressed in subsets of taste receptor cells
of the tongue and palate epithelia and are organised in
the genome in clusters. The proteins are genetically
linked to loci that influence bitter perception in mice
and humans.
Length = 303
Score = 31.5 bits (72), Expect = 0.51
Identities = 54/310 (17%), Positives = 112/310 (36%), Gaps = 44/310 (14%)
Query: 27 VIIAVVGVVGNSLTVVALLR-CPKIRNVAAAFIVSLCIADFFFCLL--------VIPFST 77
V+ ++G++GN V+ K R +++ ++ +A CL +I F
Sbjct: 14 VVEFLLGILGNGFIVLVNCIDWVKKRKLSSIDLILTSLAISRICLQWLILLDNFIIVFFP 73
Query: 78 TRFYFKTWIHGKFLCTVVPFIQYSNV--GVSLS---CIAMITINRYIMIAHHQMYNTIYK 132
+ + + + F+ + ++ LS C+ + + I + + I K
Sbjct: 74 NTYLSGKLL--RIISLFWTFLNHLSLWFATCLSVFYCLKIANFSHPIFL---WLKWRISK 128
Query: 133 PV-WI--GCMIAFCYALSFGMQIPTLAGQWGRFDLDT--RLLTCSILPDENGRSSKRALF 187
V W+ G ++ +QIP +L R T + + S L
Sbjct: 129 VVPWLLLGSLLISFLNT---VQIPNSIKASIDPELIKYKRNTTWDLRVSKFELFSSLVLL 185
Query: 188 LIGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQ----SKKDQKELKAKRNDMRITK 243
+G ++P I+ ++ S L RHT ++Q +D +A ++
Sbjct: 186 NLGSLLPF---IVFLISFLLLIFS----LWRHTRQMQLNSTGFRDPS-TEAHVRALKS-- 235
Query: 244 MVLVIFLSFLTCYLPITVVKTVDSEVHFPGLHV-ISYIFLYLSACINPIIYVIMNKQYRV 302
L+ FL Y ++ + + L I YL + I ++ N + +
Sbjct: 236 --LISFLILYISYFLSFLISIISFLLPKNKLAFIFGEIVTYLYPSGHSFILILGNPKLKQ 293
Query: 303 AYKTVLMCEK 312
A+ +L+ K
Sbjct: 294 AFLKILLKLK 303
>gnl|CDD|220403 pfam09788, Tmemb_55A, Transmembrane protein 55A. Members of this
family catalyze the hydrolysis of the 4-position
phosphate of phosphatidylinositol 4,5-bisphosphate, in
the reaction: 1-phosphatidyl-myo-inositol
4,5-bisphosphate + H(2)O =
1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Length = 258
Score = 29.8 bits (67), Expect = 1.8
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 37 NSLTVVALLRCP---KIRNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGK 89
N LT L RCP K+ +V + F + F LL I TW+ +
Sbjct: 172 NELTDNTLARCPHCRKVSSVGSRFARRRSLLCFLLALLFI-VVAVGLTAGTWLAAQ 226
>gnl|CDD|192919 pfam12030, DUF3517, Domain of unknown function (DUF3517). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is about 340
amino acids in length. This domain is found associated
with pfam00443.
Length = 337
Score = 30.1 bits (68), Expect = 1.9
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 190 GFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIF 249
GF++ C+ I+ W+ R KRL+R K L+ R R + L+
Sbjct: 24 GFLLKCLEIV-------WLDREDSKRLKRQYLTY-----FKLLEKGR---RFSHRKLMEL 68
Query: 250 LSFLTCYLPITVVKTVDSEVH 270
L+ L + +TV TVD E
Sbjct: 69 LAVLLTKIDLTVPPTVDDERR 89
>gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional.
Length = 427
Score = 29.4 bits (67), Expect = 2.7
Identities = 10/14 (71%), Positives = 11/14 (78%), Gaps = 2/14 (14%)
Query: 167 RLL--TCSILPDEN 178
LL TCSILP+EN
Sbjct: 367 TLLYATCSILPEEN 380
>gnl|CDD|131269 TIGR02214, spoVD_pbp, stage V sporulation protein D. This model
describes the spoVD subfamily of homologs of the cell
division protein FtsI, a penicillin binding protein.
This subfamily is restricted to Bacillus subtilis and
related Gram-positive species with known or suspected
endospore formation capability. In these species, the
functional equivalent of FtsI is desginated PBP-2B, a
paralog of spoVD [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan,
Cellular processes, Sporulation and germination].
Length = 636
Score = 29.4 bits (66), Expect = 3.6
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 187 FLIGFVIPCVIIILCYAKIFWV--VRSS---EKRLRRHTSKIQ-SKKDQKELKAKRNDMR 240
LI F + ++ ++F+V R S E + T +I K + L N++
Sbjct: 5 ILISF---TALFLILILRLFYVQVFRGSFYKEMAEDQWTREIPIEAKRGRILDRNGNELA 61
Query: 241 ITKMVLVIFLSFLTCYLPITVVKTVDSE 268
++ V + L P T+ K + +
Sbjct: 62 VSVSVDRVDLD------PATIRKNKEPK 83
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 29.0 bits (65), Expect = 3.8
Identities = 63/336 (18%), Positives = 120/336 (35%), Gaps = 57/336 (16%)
Query: 23 AVCTVIIAVVGVVGNSLTVVALLRCPKIRNV--AAAFIVSLCIADFFFCLLVIPF--STT 78
++I VG N + +V L ++ ++ +L +A+ + V+PF +
Sbjct: 36 TFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLL-TVFVLPFIMLSN 94
Query: 79 RFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYN--TIYKPVWI 136
+ + G C + Y++ V + +A+I +RY +I H + + Y+ +
Sbjct: 95 QGLLSGSVAG---CKFASLLYYASCTVGFATVALIAADRYRVI-HQRTRARSSAYRSTYK 150
Query: 137 GCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLL---TCSI--LPDENGR---SSKRALFL 188
+ + +L P D+D TC I D+ + K L L
Sbjct: 151 ILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTL 210
Query: 189 IGFVIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVI 248
+ + P V++ Y + + L+R + K KR+ R V ++
Sbjct: 211 VWGIAPVVMMTWFYTFFY-------RTLKRASYK------------KRS--RTLTFVCIL 249
Query: 249 FLSFLTCYLPITVVKTVDSEV------------HFPGLHVISYIFLYLSACINPIIYVIM 296
LSFL P + DS + +S + L +NPI+Y +
Sbjct: 250 LLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFL 309
Query: 297 NKQYRVAYKTVLMCEKNRLLSSIRRSGTQSKDGKNN 332
+ K C + L S RR+ +S+
Sbjct: 310 GNDF---LKRFRQCFRGELFS--RRAFLRSRQKCGA 340
>gnl|CDD|177562 PHA03234, PHA03234, DNA packaging protein UL33; Provisional.
Length = 338
Score = 28.8 bits (64), Expect = 4.6
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 51 RNVAAAFIVSLCIADFFFCLLVIPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCI 110
N + ++++L +DF L V + R + + C V FI +++ S+ +
Sbjct: 66 HNATSFYLITLFASDFLHMLCVFFLTLNREALFNF--NQAFCQCVLFIYHASCSYSICML 123
Query: 111 AMITINRY 118
A+I RY
Sbjct: 124 AIIATIRY 131
>gnl|CDD|234484 TIGR04153, cyanosort_assoc, cyanosortase-associated protein.
Members of this protein family are found exclusively in
the Cyanobacteria, usually next to and in at least one
case fused to a protein that is a strictly
cyanobacterial version of exosortase (TIGR03763).
Length = 186
Score = 28.2 bits (63), Expect = 4.7
Identities = 17/59 (28%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 238 DMRITKMVLVIFLSFLTCYLPITVVKTVDSEVHFPGLHVISYIF------LYLSACINP 290
+MR K L Y P H G+ Y YLSACINP
Sbjct: 51 EMRYVKYTHGNIEQLLRKYQPSPSATIFPQVKHQKGVG--YYGLFEDENRAYLSACINP 107
>gnl|CDD|176517 cd08575, GDPD_GDE4_like, Glycerophosphodiester phosphodiesterase
domain of mammalian glycerophosphodiester
phosphodiesterase GDE4-like proteins. This subfamily
corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in mammalian
GDE4 (also known as glycerophosphodiester
phosphodiesterase domain-containing protein 1 (GDPD1))
and similar proteins. Mammalian GDE4 is a transmembrane
protein whose cellular function is not elucidated. It is
expressed widely, including in placenta, liver, kidney,
pancreas, spleen, thymus, ovary, small intestine and
peripheral blood leukocytes. It is also expressed in the
growth cones in neuroblastoma Neuro2a cells, which
suggests mammalian GDE4 may play some distinct role from
other members of mammalian GDEs family. Also included in
this subfamily are uncharacterized mammalian
glycerophosphodiester phosphodiesterase
domain-containing protein 3 (GDPD3) and similar proteins
which display very high sequence homology to mammalian
GDE4.
Length = 264
Score = 28.0 bits (63), Expect = 6.8
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 13/78 (16%)
Query: 229 QKELKAKRNDMRI----TKMVLVIFLSFLTCYLPITVVKTVDSEVHFPGLHVISYIFLY- 283
+ L + ++ T+ +L+ T LP +K E+ P I L
Sbjct: 151 LRALHPENPNLFESFSMTRCLLLYLALGYTGLLPFVPIKESFFEIPRP------VIVLET 204
Query: 284 --LSACINPIIYVIMNKQ 299
L + + ++
Sbjct: 205 FTLGEGASIVAALLWWPN 222
>gnl|CDD|165418 PHA03147, PHA03147, hypothetical protein; Provisional.
Length = 280
Score = 28.0 bits (62), Expect = 8.1
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 234 AKRNDMRITKMVLVIFLSFLTCYLPIT---VVKTVDSEVHFP-----GLHVISYIFLYLS 285
++ D RI +M+L Y P T VV+T D++ F + +I+Y YL
Sbjct: 12 SREEDGRIVEMILTEKRKKKYVYYPYTNPWVVETEDTKDAFLSNSHNIIRMITYCLFYLQ 71
Query: 286 ACINPIIYVIMNKQYRVAYKTVL 308
A I +Y+ YRV +V
Sbjct: 72 AVIYLALYLWPLNPYRVPGNSVE 94
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 438
Score = 27.9 bits (63), Expect = 9.2
Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 19/142 (13%)
Query: 20 KITAVCTVIIAVVGVVGNSLTVVALLRCPK--IRNVAAAFIVSLCIADFFFCLLVIPFST 77
KI ++I+ ++ +VGN L + PK + VA + ++S + +L+
Sbjct: 152 KIPMYVSLIMNILNIVGNYLLIFGWFGLPKLGVAGVAISTVISRAVGLVLLFILLFRKLK 211
Query: 78 TRFYFKTWIHGKFLCTVVPFIQYS--NVGVSLS-CIAMITINRYI------MIAHHQMYN 128
RF K + ++ + G LS ++ I +I +A +
Sbjct: 212 IRFRLKDLRPFPKK-LLKKILKIGLPSAGEELSYNLSQTVITAFIARLGTAALAARTYAS 270
Query: 129 TIYKPVWIGCMIAFCYALSFGM 150
I M F ++L+ G
Sbjct: 271 NI-------SMFVFLFSLAIGQ 285
>gnl|CDD|220884 pfam10826, DUF2551, Protein of unknown function (DUF2551). This
Archaeal family of proteins has no known function.
Length = 83
Score = 26.1 bits (58), Expect = 10.0
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 292 IYVIMNKQYRVAYKTV-----LMCEKNRLLSSIRRSGTQSKDGKNNEYKLKST 339
I+ + K++ V+Y V L+ + +LS + S G +N Y LK
Sbjct: 31 IHERLAKKFDVSYHGVAAMVGLIHSRLGILSVHKDS-----YGDHNVYSLKEK 78
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.141 0.435
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,063,590
Number of extensions: 1651727
Number of successful extensions: 2197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2166
Number of HSP's successfully gapped: 78
Length of query: 342
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 244
Effective length of database: 6,590,910
Effective search space: 1608182040
Effective search space used: 1608182040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (26.5 bits)