RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17917
         (342 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score =  116 bits (291), Expect = 1e-30
 Identities = 59/319 (18%), Positives = 121/319 (37%), Gaps = 19/319 (5%)

Query: 15  PDVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLVIP 74
                 + A    ++ ++G   N LT+   ++  K+R      +++L +AD F       
Sbjct: 33  EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT 92

Query: 75  FSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPV 134
            +        ++ G   C +  F       ++L  + ++ I RY+++          +  
Sbjct: 93  TTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENH 152

Query: 135 WIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDENGRSSKR---ALFLIGF 191
            I  +             P +       +                 +++     +F++ F
Sbjct: 153 AIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF 212

Query: 192 VIPCVIIILCYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELKAKRNDMRITKMVLVIFLS 251
           +IP ++I  CY ++ + V+ +  + +   +  +++K             +T+MV+++ ++
Sbjct: 213 IIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEK------------EVTRMVIIMVIA 260

Query: 252 FLTCYLPITVVK----TVDSEVHFPGLHVISYIFLYLSACINPIIYVIMNKQYRVAYKTV 307
           FL C+LP   V     T       P    I   F   SA  NP+IY++MNKQ+R    T 
Sbjct: 261 FLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT 320

Query: 308 LMCEKNRLLSSIRRSGTQS 326
           L C KN L      +    
Sbjct: 321 LCCGKNPLGDDEASTTVSK 339


>d1imua_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue)
           {Haemophilus influenzae [TaxId: 727]}
          Length = 107

 Score = 27.1 bits (60), Expect = 1.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 201 CYAKIFWVVRSSEKRLRRHTSKIQSKKDQKELK 233
            Y  I  V    E++L +   K +S++  + LK
Sbjct: 70  MYKAINEVEEKLERQLNKLQHKSESRRADERLK 102


>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 250

 Score = 27.8 bits (61), Expect = 1.8
 Identities = 22/175 (12%), Positives = 56/175 (32%), Gaps = 12/175 (6%)

Query: 93  TVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYKPVWIGCMIAFCYALSFGMQI 152
             VP I    + + +     + ++  ++  HH+  NT   P WI  +          +Q 
Sbjct: 59  LSVPIIIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQR 118

Query: 153 PTLAGQWGRFDLDTRLLTCSIL----------PDENGRSSKRALFLIGFVIPCVIIILCY 202
           P                               P +N R + +   L   +   +  +   
Sbjct: 119 PVTTPSPDSKPTIISRANDEYFIRKPAGDFVCPVDNARVAVQPERLFSEMKWHLNGLTQP 178

Query: 203 AKIFWVVRSSEKRLRRHTSKIQSKKDQKELKA--KRNDMRITKMVLVIFLSFLTC 255
             +   ++ + + ++    +++S  +  +LK   +   M   ++ L +F    + 
Sbjct: 179 VTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSI 233


>d2pkgc1 g.92.1.1 (C:91-170) Small t antigen, ST-AG {Simian virus 40
           [TaxId: 10633]}
          Length = 80

 Score = 24.9 bits (54), Expect = 5.8
 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 102 NVGVSLSCIAMITINRYIMIAHHQMYNTIYKP--VWIGCMIAFCYALSFGMQI 152
            +  +  C+  +   +      H+      K   VW+ C    C+ + FG+ +
Sbjct: 16  KMSANCICLLCLLRMK------HENRKLYRKDPLVWVDCYCFDCFRMWFGLDL 62


>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
           methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 284

 Score = 26.2 bits (56), Expect = 6.7
 Identities = 9/53 (16%), Positives = 15/53 (28%)

Query: 126 MYNTIYKPVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLLTCSILPDEN 178
           +        W+              +I        +        TCS+LP+EN
Sbjct: 186 VIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEEN 238


>d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase
           {Escherichia coli [TaxId: 562]}
          Length = 221

 Score = 25.9 bits (56), Expect = 6.9
 Identities = 18/157 (11%), Positives = 36/157 (22%), Gaps = 14/157 (8%)

Query: 13  ALPDVTLKITAVCTVIIAVVGVVGNSLTVVALLRCPKIRNVAAAFIVSLCIADFFFCLLV 72
           A+PD+ L++ A               +      R          F+   C          
Sbjct: 53  AIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIA--------FLEEPCKTRDDSRAFA 104

Query: 73  IPFSTTRFYFKTWIHGKFLCTVVPFIQYSNVGVSLSCIAMITINRYIMIAHHQMYNTIYK 132
                   + ++     F       ++   +  +L+        +        +      
Sbjct: 105 RETGIAIAWDESLREPDFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGL------ 158

Query: 133 PVWIGCMIAFCYALSFGMQIPTLAGQWGRFDLDTRLL 169
              I   I     L+   +I           LDT  L
Sbjct: 159 TAVISSSIESSLGLTQLARIAAWLTPDTIPGLDTLDL 195


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.141    0.435 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,262,760
Number of extensions: 57730
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 19
Length of query: 342
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,226,816
Effective search space: 314064896
Effective search space used: 314064896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.7 bits)