BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17920
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DYU|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), H32
pdb|3DYU|B Chain B, Crystal Structure Of Snx9px-Bar (230-595), H32
pdb|3DYU|C Chain C, Crystal Structure Of Snx9px-Bar (230-595), H32
Length = 366
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 146/266 (54%), Gaps = 15/266 (5%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHPV+ S V+Q F+ DEK WK GKR AE+D
Sbjct: 85 QVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDE 144
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L G +F +E + +EQ+ E+ +F +D VK L+ V + K+C +
Sbjct: 145 LAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPK 204
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L DA+ + G TY E+ L EQPK D L +
Sbjct: 205 EYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECN 264
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDI+G HK + K +E +K+ +K+ Q ++KR +SYAL E+N
Sbjct: 265 HEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMN 324
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQ 321
HFH ++ N+ ++ +L +Q+ FY+
Sbjct: 325 HFHSNRIYDYNSVIRLYLEQQVQFYE 350
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 30 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGR 75
+EQ+ E+ +F +D VK L+ V + K+C +EYQKIG+
Sbjct: 166 IEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGK 211
>pdb|2RAJ|A Chain A, So4 Bound Px-Bar Membrane Remodeling Unit Of Sorting Nexin
9
pdb|2RAK|A Chain A, Pi(3)p Bound Px-Bar Membrane Remodeling Unit Of Sorting
Nexin 9
Length = 392
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 146/266 (54%), Gaps = 15/266 (5%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHPV+ S V+Q F+ DEK WK GKR AE+D
Sbjct: 111 QVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDE 170
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L G +F +E + +EQ+ E+ +F +D VK L+ V + K+C +
Sbjct: 171 LAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPK 230
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L DA+ + G TY E+ L EQPK D L +
Sbjct: 231 EYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECN 290
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDI+G HK + K +E +K+ +K+ Q ++KR +SYAL E+N
Sbjct: 291 HEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMN 350
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQ 321
HFH ++ N+ ++ +L +Q+ FY+
Sbjct: 351 HFHSNRIYDYNSVIRLYLEQQVQFYE 376
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 30 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGR 75
+EQ+ E+ +F +D VK L+ V + K+C +EYQKIG+
Sbjct: 192 IEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGK 237
>pdb|3DYT|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), C2221
Length = 366
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 139/266 (52%), Gaps = 15/266 (5%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ++ CRHPV+ S V+Q F+ DEK WK GKR AE+D
Sbjct: 85 QVTGRFEEEFIKXRXERLQAWXTRXCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDE 144
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L G +F E + +EQ+ E+ +F D VK L+ V + K+C +
Sbjct: 145 LAGVXIFSTXEPEAPDLDLVEIEQKCEAVGKFTKAXDDGVKELLTVGQEHWKRCTGPLPK 204
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L DA+ + G TY E+ L EQPK D L +
Sbjct: 205 EYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLXECN 264
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDI+G HK + K +E +K+ +K+ Q +KR SYAL E N
Sbjct: 265 HEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNXVKRVSIXSYALQAEXN 324
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQ 321
HFH ++ N+ ++ +L +Q+ FY+
Sbjct: 325 HFHSNRIYDYNSVIRLYLEQQVQFYE 350
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 30 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGR 75
+EQ+ E+ +F D VK L+ V + K+C +EYQKIG+
Sbjct: 166 IEQKCEAVGKFTKAXDDGVKELLTVGQEHWKRCTGPLPKEYQKIGK 211
>pdb|2RAI|A Chain A, The Px-Bar Membrane Remodeling Unit Of Sorting Nexin 9
pdb|2RAI|B Chain B, The Px-Bar Membrane Remodeling Unit Of Sorting Nexin 9
Length = 392
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 139/266 (52%), Gaps = 15/266 (5%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ++ CRHPV+ S V+Q F+ DEK WK GKR AE+D
Sbjct: 111 QVTGRFEEEFIKXRXERLQAWXTRXCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDE 170
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L G +F E + +EQ+ E+ +F D VK L+ V + K+C +
Sbjct: 171 LAGVXIFSTXEPEAPDLDLVEIEQKCEAVGKFTKAXDDGVKELLTVGQEHWKRCTGPLPK 230
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L DA+ + G TY E+ L EQPK D L +
Sbjct: 231 EYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLXECN 290
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDI+G HK + K +E +K+ +K+ Q +KR SYAL E N
Sbjct: 291 HEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNXVKRVSIXSYALQAEXN 350
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQ 321
HFH ++ N+ ++ +L +Q+ FY+
Sbjct: 351 HFHSNRIYDYNSVIRLYLEQQVQFYE 376
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 30 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGR 75
+EQ+ E+ +F D VK L+ V + K+C +EYQKIG+
Sbjct: 192 IEQKCEAVGKFTKAXDDGVKELLTVGQEHWKRCTGPLPKEYQKIGK 237
>pdb|4AKV|A Chain A, Crystal Structure Of Human Sorting Nexin 33 (Snx33)
pdb|4AKV|B Chain B, Crystal Structure Of Human Sorting Nexin 33 (Snx33)
Length = 386
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 150/269 (55%), Gaps = 15/269 (5%)
Query: 69 EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEK 128
E Q GR+EE FIE RK +L ++D++ HPVL + +QHF++C D+K+WK GKR AEK
Sbjct: 103 EKQATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEK 162
Query: 129 DNLLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 188
D ++G S L + P ++E ++ F +D +V L V ++ +K +
Sbjct: 163 DEMVGASFLLTFQIPTEHQDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGF 222
Query: 189 KREYQKIG-----IDRSH----------LRDALKKTGDTYNELGKLFEEQPKLDWEPLGD 233
++E+QK+G I S L A+ TG TY +G++F EQPK D + D
Sbjct: 223 RKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLD 282
Query: 234 VLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGE 293
L +Y+G++++ PDI+ L K K +E ++M+ E +M + + +R V +AL E
Sbjct: 283 TLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRMVQDEADGIRRRCRVVGFALQAE 342
Query: 294 INHFHQEQVSQINAAMKSFLTEQINFYQK 322
+NHFHQ + M+++L +QI FYQ+
Sbjct: 343 MNHFHQRRELDFKHMMQNYLRQQILFYQR 371
>pdb|1SK1|A Chain A, Arsenate Reductase R60k Mutant +0.4m Arsenate From E. Coli
pdb|1SJZ|A Chain A, Arsenate Reductase R60k Mutant +0.4m Arsenite From E. Coli
Length = 140
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 51 LVAVVADQTKKCQTLYKR---EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPV 106
LV ++AD + L K+ Y+++G E++F + + +D++ +HP+L P+
Sbjct: 44 LVKLIADMGISVRALLKKNVEPYEQLGLAEDKFTDDQ------LIDFMLQHPILINRPI 96
>pdb|1SD8|A Chain A, Arsenate Reductase R60k Mutant From E. Coli
Length = 141
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 51 LVAVVADQTKKCQTLYKR---EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPV 106
LV ++AD + L K+ Y+++G E++F + + +D++ +HP+L P+
Sbjct: 44 LVKLIADMGISVRALLKKNVEPYEQLGLAEDKFTDDQ------LIDFMLQHPILINRPI 96
>pdb|1S3C|A Chain A, Arsenate Reductase C12s Mutant From E. Coli
pdb|1SD9|A Chain A, Arsenate Reductase C12s Mutant +0.4m Arsenate From E. Coli
Length = 141
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 51 LVAVVADQTKKCQTLYKR---EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPV 106
LV ++AD + L ++ Y+++G E++F + + +D++ +HP+L P+
Sbjct: 44 LVKLIADMGISVRALLRKNVEPYEQLGLAEDKFTDDQ------LIDFMLQHPILINRPI 96
>pdb|1JZW|A Chain A, Arsenate Reductase + Sodium Arsenate From E. Coli
Length = 140
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 51 LVAVVADQTKKCQTLYKR---EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPV 106
LV ++AD + L ++ Y+++G E++F + + +D++ +HP+L P+
Sbjct: 44 LVKLIADMGISVRALLRKNVEPYEQLGLAEDKFTDDQ------LIDFMLQHPILINRPI 96
>pdb|1J9B|A Chain A, Arsenate Reductase+0.4m Arsenite From E. Coli
Length = 141
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 51 LVAVVADQTKKCQTLYKR---EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPV 106
LV ++AD + L ++ Y+++G E++F + + +D++ +HP+L P+
Sbjct: 44 LVKLIADMGISVRALLRKNVEPYEQLGLAEDKFTDDQ------LIDFMLQHPILINRPI 96
>pdb|1I9D|A Chain A, Arsenate Reductase From E. Coli
Length = 141
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 51 LVAVVADQTKKCQTLYKR---EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPV 106
LV ++AD + L ++ Y+++G E++F + + +D++ +HP+L P+
Sbjct: 44 LVKLIADMGISVRALLRKNVEPYEQLGLAEDKFTDDQ------LIDFMLQHPILINRPI 96
>pdb|1SK0|A Chain A, Arsenate Reductase R60a Mutant +0.4m Arsenite From E. Coli
Length = 140
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 51 LVAVVADQTKKCQTLYKR---EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPV 106
LV ++AD + L + Y+++G E++F + + +D++ +HP+L P+
Sbjct: 44 LVKLIADMGISVRALLAKNVEPYEQLGLAEDKFTDDQ------LIDFMLQHPILINRPI 96
>pdb|3IQ2|A Chain A, Human Sorting Nexin 7, Phox Homology (Px) Domain
pdb|3IQ2|B Chain B, Human Sorting Nexin 7, Phox Homology (Px) Domain
Length = 138
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 73 IGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113
+ R+ + FIE R+ L F++ + HP L + ++ F+T
Sbjct: 83 VERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTA 123
>pdb|2CSK|A Chain A, Solution Structure Of Px Domain From Human Snx12
Length = 146
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPV 100
G +EE FIE R+ L+ F++ + HP+
Sbjct: 90 GIFEESFIEERRQGLEQFINKIAGHPL 116
>pdb|1SK2|A Chain A, Arsenate Reductase R60a Mutant +0.4m Arsenate From E. Coli
Length = 140
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 51 LVAVVADQTKKCQTLYKR---EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPV 106
LV ++AD + L + Y+++G E++F + + +D++ +HP+L P+
Sbjct: 44 LVKLIADMGISVRALLAKNVEPYEQLGLAEDKFTDDQ------LIDFMLQHPILINRPI 96
>pdb|1S3D|A Chain A, Arsenate Reductase R60a Mutant From E. Coli
Length = 138
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 51 LVAVVADQTKKCQTLYKR---EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPV 106
LV ++AD + L + Y+++G E++F + + +D++ +HP+L P+
Sbjct: 42 LVKLIADMGISVRALLAKNVEPYEQLGLAEDKFTDDQ------LIDFMLQHPILINRPI 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,917,000
Number of Sequences: 62578
Number of extensions: 430512
Number of successful extensions: 1307
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1283
Number of HSP's gapped (non-prelim): 32
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)