Query psy17920
Match_columns 393
No_of_seqs 197 out of 727
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 17:32:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2528|consensus 100.0 4.6E-55 9.9E-60 425.8 14.9 251 12-270 175-461 (490)
2 PF10456 BAR_3_WASP_bdg: WASP- 100.0 1.3E-48 2.9E-53 364.6 19.9 210 115-393 1-226 (237)
3 cd07670 BAR_SNX18 The Bin/Amph 100.0 4.2E-45 9.1E-50 327.1 18.2 182 143-393 1-197 (207)
4 cd07669 BAR_SNX33 The Bin/Amph 100.0 8.3E-44 1.8E-48 319.9 18.0 182 143-393 1-197 (207)
5 cd07668 BAR_SNX9 The Bin/Amphi 100.0 8.5E-44 1.8E-48 319.9 18.1 180 145-393 3-197 (210)
6 cd07626 BAR_SNX9_like The Bin/ 100.0 2.4E-34 5.3E-39 262.4 23.9 181 152-332 2-197 (199)
7 KOG2273|consensus 100.0 2.1E-26 4.5E-31 239.8 28.2 311 22-333 109-497 (503)
8 cd07666 BAR_SNX7 The Bin/Amphi 99.9 7.9E-26 1.7E-30 212.1 21.5 224 98-331 1-241 (243)
9 cd07285 PX_SNX9 The phosphoino 99.9 5.1E-28 1.1E-32 205.0 5.8 104 23-131 1-125 (126)
10 cd07286 PX_SNX18 The phosphoin 99.9 2.3E-27 5E-32 201.5 5.4 104 23-131 1-126 (127)
11 cd07667 BAR_SNX30 The Bin/Amph 99.9 2.1E-23 4.6E-28 194.5 21.0 224 98-331 1-238 (240)
12 cd07623 BAR_SNX1_2 The Bin/Amp 99.9 4E-22 8.6E-27 186.9 23.1 185 149-333 7-222 (224)
13 cd07665 BAR_SNX1 The Bin/Amphi 99.9 3.9E-22 8.5E-27 186.5 22.8 187 148-334 16-233 (234)
14 cd07664 BAR_SNX2 The Bin/Amphi 99.9 3.1E-21 6.8E-26 181.0 23.5 187 148-334 16-233 (234)
15 cd07624 BAR_SNX7_30 The Bin/Am 99.9 6.6E-21 1.4E-25 175.6 21.7 180 152-332 12-199 (200)
16 cd06862 PX_SNX9_18_like The ph 99.9 4.2E-23 9.2E-28 175.9 4.4 104 23-131 1-124 (125)
17 cd07627 BAR_Vps5p The Bin/Amph 99.8 3.3E-19 7.1E-24 166.3 23.3 180 152-332 2-215 (216)
18 cd07284 PX_SNX7 The phosphoino 99.8 9.4E-22 2E-26 165.5 4.1 84 23-113 1-115 (116)
19 cd07628 BAR_Atg24p The Bin/Amp 99.8 4.1E-19 8.9E-24 161.7 21.7 174 152-331 2-183 (185)
20 cd07294 PX_SNX12 The phosphoin 99.8 2.8E-21 6E-26 166.0 5.0 93 21-114 2-123 (132)
21 cd07293 PX_SNX3 The phosphoino 99.8 2.5E-21 5.5E-26 164.6 4.7 91 23-114 2-121 (123)
22 cd07283 PX_SNX30 The phosphoin 99.8 3E-21 6.5E-26 162.5 4.5 84 23-113 1-115 (116)
23 cd07626 BAR_SNX9_like The Bin/ 99.8 3.1E-18 6.7E-23 156.6 23.1 75 319-393 115-189 (199)
24 cd07621 BAR_SNX5_6 The Bin/Amp 99.8 4.3E-18 9.3E-23 157.5 24.2 184 149-332 19-216 (219)
25 cd07663 BAR_SNX5 The Bin/Amphi 99.8 3.9E-18 8.5E-23 157.2 23.8 184 149-333 18-216 (218)
26 cd07630 BAR_SNX_like The Bin/A 99.8 3.2E-18 6.9E-23 157.0 23.1 181 151-331 1-196 (198)
27 PF09325 Vps5: Vps5 C terminal 99.8 2.1E-18 4.5E-23 162.4 22.4 183 149-332 19-235 (236)
28 cd07622 BAR_SNX4 The Bin/Amphi 99.8 3.4E-18 7.3E-23 157.3 22.9 178 151-333 11-199 (201)
29 cd06861 PX_Vps5p The phosphoin 99.8 8.3E-21 1.8E-25 159.2 4.0 91 23-114 1-112 (112)
30 cd06894 PX_SNX3_like The phosp 99.8 9.2E-21 2E-25 161.3 4.1 91 23-114 2-121 (123)
31 cd07288 PX_SNX15 The phosphoin 99.8 1.6E-20 3.5E-25 158.5 4.0 90 24-113 4-117 (118)
32 cd06891 PX_Vps17p The phosphoi 99.8 2.2E-20 4.7E-25 160.8 3.7 96 18-113 25-139 (140)
33 cd06860 PX_SNX7_30_like The ph 99.8 2.1E-20 4.4E-25 157.7 3.4 91 23-113 1-115 (116)
34 cd07295 PX_Grd19 The phosphoin 99.8 2.4E-20 5.1E-25 157.2 3.4 91 23-114 2-114 (116)
35 cd07282 PX_SNX2 The phosphoino 99.8 2.8E-20 6.1E-25 158.6 3.2 91 23-113 1-123 (124)
36 cd07662 BAR_SNX6 The Bin/Amphi 99.8 4.8E-17 1E-21 149.1 24.3 183 150-332 19-215 (218)
37 cd07596 BAR_SNX The Bin/Amphip 99.8 2.2E-17 4.7E-22 152.8 21.1 179 152-331 2-216 (218)
38 cd07598 BAR_FAM92 The Bin/Amph 99.7 5.7E-16 1.2E-20 143.4 23.9 177 159-335 9-203 (211)
39 cd07281 PX_SNX1 The phosphoino 99.7 5.5E-19 1.2E-23 150.8 3.3 90 23-113 1-123 (124)
40 cd07629 BAR_Atg20p The Bin/Amp 99.7 3.6E-16 7.9E-21 142.5 21.6 172 152-330 2-184 (187)
41 cd07287 PX_RPK118_like The pho 99.7 1.2E-18 2.5E-23 147.1 3.7 89 25-113 5-117 (118)
42 cd06898 PX_SNX10 The phosphoin 99.7 1.6E-18 3.4E-23 145.6 3.3 89 24-113 1-112 (113)
43 cd06863 PX_Atg24p The phosphoi 99.7 2.4E-18 5.2E-23 145.6 3.9 90 23-113 1-117 (118)
44 cd07301 PX_SNX21 The phosphoin 99.7 2E-18 4.3E-23 144.7 2.9 89 23-112 1-110 (112)
45 cd06881 PX_SNX15_like The phos 99.7 3.1E-18 6.8E-23 144.7 3.0 90 23-112 3-115 (117)
46 cd06864 PX_SNX4 The phosphoino 99.7 4E-18 8.6E-23 146.3 3.2 91 23-113 1-128 (129)
47 cd06865 PX_SNX_like The phosph 99.7 4.3E-18 9.4E-23 144.4 3.4 90 24-113 1-119 (120)
48 cd07291 PX_SNX5 The phosphoino 99.7 6.2E-18 1.3E-22 143.7 3.9 86 21-113 1-140 (141)
49 cd07292 PX_SNX6 The phosphoino 99.7 1.1E-17 2.4E-22 141.9 4.4 85 22-113 2-140 (141)
50 COG5391 Phox homology (PX) dom 99.7 8.7E-15 1.9E-19 151.3 25.5 62 274-335 461-522 (524)
51 cd07625 BAR_Vps17p The Bin/Amp 99.7 8.4E-15 1.8E-19 136.8 22.7 177 154-330 18-227 (230)
52 cd06859 PX_SNX1_2_like The pho 99.7 4.8E-17 1E-21 136.7 3.8 90 23-113 1-113 (114)
53 KOG2527|consensus 99.7 1.4E-17 3.1E-22 139.0 0.5 93 20-114 15-130 (144)
54 cd06867 PX_SNX41_42 The phosph 99.6 5.7E-17 1.2E-21 135.9 3.1 87 25-114 2-112 (112)
55 cd06893 PX_SNX19 The phosphoin 99.6 1.5E-16 3.2E-21 136.9 2.5 88 26-113 7-131 (132)
56 cd06866 PX_SNX8_Mvp1p_like The 99.6 2.6E-16 5.6E-21 130.4 2.6 83 29-113 8-104 (105)
57 cd06892 PX_SNX5_like The phosp 99.6 5.4E-16 1.2E-20 133.3 3.9 91 22-113 2-140 (141)
58 cd07300 PX_SNX20 The phosphoin 99.6 9.1E-16 2E-20 128.9 3.3 63 52-114 35-112 (114)
59 cd07279 PX_SNX20_21_like The p 99.6 9.6E-16 2.1E-20 128.5 2.9 61 53-113 36-111 (112)
60 cd06868 PX_HS1BP3 The phosphoi 99.6 1.5E-15 3.2E-20 128.7 2.8 59 53-113 47-119 (120)
61 cd06872 PX_SNX19_like_plant Th 99.5 2.3E-15 5E-20 125.1 2.3 90 23-113 1-106 (107)
62 cd07280 PX_YPT35 The phosphoin 99.5 7.3E-15 1.6E-19 124.7 2.5 88 24-112 4-119 (120)
63 cd06886 PX_SNX27 The phosphoin 99.5 1.7E-14 3.7E-19 119.7 3.4 89 22-113 3-105 (106)
64 cd07597 BAR_SNX8 The Bin/Amphi 99.5 7.7E-12 1.7E-16 119.0 22.0 186 147-333 15-245 (246)
65 cd06877 PX_SNX14 The phosphoin 99.5 1.8E-14 4E-19 122.0 3.0 61 53-113 44-118 (119)
66 cd06873 PX_SNX13 The phosphoin 99.5 2.5E-14 5.4E-19 121.4 2.4 88 22-110 4-112 (120)
67 cd06879 PX_UP1_plant The phosp 99.5 3.1E-14 6.7E-19 122.2 3.0 60 54-113 64-137 (138)
68 cd06870 PX_CISK The phosphoino 99.4 2.6E-14 5.5E-19 119.3 2.1 60 54-113 35-108 (109)
69 cd07276 PX_SNX16 The phosphoin 99.4 2.7E-14 5.9E-19 119.3 2.0 61 53-113 35-109 (110)
70 cd06897 PX_SNARE The phosphoin 99.4 1E-13 2.2E-18 115.4 3.2 61 53-113 29-107 (108)
71 cd06871 PX_MONaKA The phosphoi 99.4 7.3E-14 1.6E-18 118.5 1.9 62 53-114 38-110 (120)
72 cd06875 PX_IRAS The phosphoino 99.4 4.1E-13 8.8E-18 113.3 3.4 62 53-114 31-105 (116)
73 cd06885 PX_SNX17_31 The phosph 99.3 5.2E-13 1.1E-17 110.5 1.8 60 53-113 29-102 (104)
74 KOG1660|consensus 99.3 3.5E-10 7.6E-15 108.9 19.2 238 88-331 137-393 (399)
75 PF10456 BAR_3_WASP_bdg: WASP- 99.3 7.7E-10 1.7E-14 104.0 20.3 93 234-333 143-235 (237)
76 cd07277 PX_RUN The phosphoinos 99.2 2.8E-12 6.1E-17 108.3 2.4 61 53-114 32-106 (118)
77 cd06880 PX_SNX22 The phosphoin 99.2 4.1E-12 9E-17 106.1 2.6 59 53-114 33-102 (110)
78 cd06882 PX_p40phox The phospho 99.2 4.5E-12 9.8E-17 107.9 1.9 91 22-114 3-118 (123)
79 cd06878 PX_SNX25 The phosphoin 99.2 4.9E-12 1.1E-16 108.4 2.0 60 54-113 51-126 (127)
80 cd06876 PX_MDM1p The phosphoin 99.2 7.6E-12 1.7E-16 108.1 2.7 60 53-112 57-132 (133)
81 cd07670 BAR_SNX18 The Bin/Amph 99.2 1.2E-10 2.7E-15 105.3 9.4 88 231-332 118-205 (207)
82 cd07668 BAR_SNX9 The Bin/Amphi 99.2 1.4E-10 3.1E-15 105.3 9.7 90 231-334 118-207 (210)
83 cd07669 BAR_SNX33 The Bin/Amph 99.1 1.8E-10 4E-15 104.5 9.4 88 231-332 118-205 (207)
84 smart00312 PX PhoX homologous 99.1 1.9E-11 4E-16 100.5 1.4 60 53-112 28-105 (105)
85 cd06869 PX_UP2_fungi The phosp 99.1 2.2E-11 4.8E-16 103.0 1.2 55 53-113 50-118 (119)
86 PF00787 PX: PX domain; Inter 99.1 2.9E-11 6.2E-16 100.0 0.1 91 22-113 3-112 (113)
87 cd06093 PX_domain The Phox Hom 99.0 1.1E-10 2.4E-15 95.3 2.8 60 53-112 32-105 (106)
88 cd07307 BAR The Bin/Amphiphysi 99.0 1.7E-07 3.7E-12 83.8 21.1 171 159-330 5-191 (194)
89 cd06874 PX_KIF16B_SNX23 The ph 98.9 9.7E-10 2.1E-14 94.0 3.3 84 23-107 1-101 (127)
90 cd06883 PX_PI3K_C2 The phospho 98.8 7.5E-10 1.6E-14 92.4 1.3 60 53-112 32-107 (109)
91 PF06730 FAM92: FAM92 protein; 98.7 6.6E-06 1.4E-10 75.9 23.1 173 163-335 20-210 (219)
92 PF03114 BAR: BAR domain; Int 98.6 1.7E-05 3.7E-10 73.1 23.3 147 188-334 73-228 (229)
93 cd06895 PX_PLD The phosphoinos 98.6 2.7E-08 5.8E-13 86.5 2.4 37 77-113 103-139 (140)
94 cd07596 BAR_SNX The Bin/Amphip 98.5 2.7E-05 5.8E-10 71.7 22.2 51 342-392 158-208 (218)
95 cd06884 PX_PI3K_C2_68D The pho 98.5 3.2E-08 7E-13 82.7 1.6 89 24-112 3-109 (111)
96 cd07623 BAR_SNX1_2 The Bin/Amp 98.4 0.00022 4.8E-09 67.0 23.5 50 342-391 162-211 (224)
97 cd06890 PX_Bem1p The phosphoin 98.3 1.6E-07 3.5E-12 78.7 1.4 59 54-112 30-110 (112)
98 cd07624 BAR_SNX7_30 The Bin/Am 98.3 0.00014 3.1E-09 67.1 19.4 49 344-392 142-190 (200)
99 cd07628 BAR_Atg24p The Bin/Amp 98.3 0.00014 3.1E-09 66.3 19.0 49 344-392 127-175 (185)
100 cd06888 PX_FISH The phosphoino 98.2 6.2E-07 1.3E-11 75.9 2.3 88 25-112 4-117 (119)
101 cd07598 BAR_FAM92 The Bin/Amph 98.1 0.0025 5.4E-08 59.3 24.2 50 343-392 142-191 (211)
102 cd06887 PX_p47phox The phospho 98.1 1.7E-06 3.7E-11 73.1 2.0 45 68-114 71-116 (118)
103 smart00721 BAR BAR domain. 98.1 0.0014 3E-08 61.4 21.8 134 200-334 91-237 (239)
104 PF09325 Vps5: Vps5 C terminal 97.9 0.0059 1.3E-07 57.2 24.0 50 343-392 177-226 (236)
105 cd07622 BAR_SNX4 The Bin/Amphi 97.9 0.0084 1.8E-07 55.4 22.8 51 342-392 139-189 (201)
106 cd07667 BAR_SNX30 The Bin/Amph 97.9 0.007 1.5E-07 57.2 22.3 59 327-392 172-230 (240)
107 cd07627 BAR_Vps5p The Bin/Amph 97.8 0.017 3.8E-07 53.8 24.3 49 344-392 158-206 (216)
108 cd07615 BAR_Endophilin_A3 The 97.8 0.0054 1.2E-07 57.4 20.2 143 188-335 69-217 (223)
109 cd07588 BAR_Amphiphysin The Bi 97.8 0.018 3.9E-07 53.6 23.4 106 229-334 90-206 (211)
110 cd07603 BAR_ACAPs The Bin/Amph 97.7 0.021 4.4E-07 52.8 23.2 178 152-330 7-196 (200)
111 cd07592 BAR_Endophilin_A The B 97.7 0.0081 1.7E-07 56.4 20.7 133 199-335 83-217 (223)
112 cd07613 BAR_Endophilin_A1 The 97.7 0.0022 4.8E-08 59.9 16.8 144 188-335 69-217 (223)
113 cd07289 PX_PI3K_C2_alpha The p 97.7 1.2E-05 2.6E-10 66.8 1.4 60 53-112 32-107 (109)
114 cd07290 PX_PI3K_C2_beta The ph 97.7 1.8E-05 3.9E-10 65.8 1.6 69 36-112 37-107 (109)
115 cd07666 BAR_SNX7 The Bin/Amphi 97.6 0.014 3E-07 55.5 21.0 49 344-392 185-233 (243)
116 cd07629 BAR_Atg20p The Bin/Amp 97.6 0.016 3.4E-07 53.0 20.8 46 347-392 131-177 (187)
117 cd07590 BAR_Bin3 The Bin/Amphi 97.6 0.03 6.5E-07 52.6 22.8 106 230-335 95-213 (225)
118 KOG1259|consensus 97.5 4.1E-05 9E-10 73.9 2.3 60 54-114 42-115 (490)
119 cd07593 BAR_MUG137_fungi The B 97.5 0.014 3.1E-07 54.4 18.9 130 199-332 70-206 (215)
120 cd07601 BAR_APPL The Bin/Amphi 97.5 0.05 1.1E-06 50.7 22.3 176 152-328 7-200 (215)
121 cd07595 BAR_RhoGAP_Rich-like T 97.5 0.019 4.2E-07 54.6 19.7 133 199-335 76-225 (244)
122 cd07618 BAR_Rich1 The Bin/Amph 97.4 0.033 7.1E-07 53.0 20.2 182 150-335 18-227 (246)
123 cd07620 BAR_SH3BP1 The Bin/Amp 97.4 0.058 1.3E-06 51.3 21.1 133 200-337 77-240 (257)
124 cd07614 BAR_Endophilin_A2 The 97.4 0.074 1.6E-06 49.9 21.7 143 188-335 69-217 (223)
125 cd07611 BAR_Amphiphysin_I_II T 97.3 0.12 2.7E-06 47.9 22.4 102 231-332 92-204 (211)
126 cd07639 BAR_ACAP1 The Bin/Amph 97.3 0.14 3.1E-06 47.2 21.8 179 151-330 6-196 (200)
127 cd07602 BAR_RhoGAP_OPHN1-like 97.2 0.17 3.6E-06 47.0 22.9 176 151-330 6-203 (207)
128 cd07664 BAR_SNX2 The Bin/Amphi 97.2 0.084 1.8E-06 50.0 20.9 46 344-389 174-219 (234)
129 cd07665 BAR_SNX1 The Bin/Amphi 97.2 0.19 4.1E-06 47.5 23.3 44 345-388 175-218 (234)
130 cd07296 PX_PLD1 The phosphoino 97.2 0.00013 2.8E-09 62.8 1.6 33 81-113 102-134 (135)
131 cd07631 BAR_APPL1 The Bin/Amph 97.2 0.15 3.2E-06 47.3 21.2 166 157-326 12-198 (215)
132 cd07637 BAR_ACAP3 The Bin/Amph 97.2 0.19 4.1E-06 46.4 22.8 128 200-330 57-196 (200)
133 cd07594 BAR_Endophilin_B The B 97.1 0.11 2.5E-06 48.9 20.4 131 199-333 88-228 (229)
134 cd07604 BAR_ASAPs The Bin/Amph 97.1 0.24 5.3E-06 46.3 23.8 147 187-333 41-211 (215)
135 cd07589 BAR_DNMBP The Bin/Amph 97.1 0.23 4.9E-06 45.7 21.5 97 229-325 88-184 (195)
136 cd07638 BAR_ACAP2 The Bin/Amph 97.1 0.25 5.4E-06 45.6 22.5 174 153-330 8-196 (200)
137 cd07612 BAR_Bin2 The Bin/Amphi 97.0 0.27 5.9E-06 45.7 22.7 104 231-334 92-206 (211)
138 cd07307 BAR The Bin/Amphiphysi 97.0 0.21 4.5E-06 44.1 20.8 51 342-392 134-184 (194)
139 cd07625 BAR_Vps17p The Bin/Amp 97.0 0.3 6.6E-06 46.0 23.8 69 323-391 137-219 (230)
140 cd07617 BAR_Endophilin_B2 The 97.0 0.071 1.5E-06 49.8 17.6 131 199-332 88-218 (220)
141 cd07591 BAR_Rvs161p The Bin/Am 97.0 0.34 7.4E-06 45.6 22.8 107 229-335 95-212 (224)
142 cd07619 BAR_Rich2 The Bin/Amph 97.0 0.24 5.1E-06 47.2 20.8 182 150-335 18-229 (248)
143 cd07616 BAR_Endophilin_B1 The 96.9 0.12 2.5E-06 48.8 18.3 131 199-332 88-227 (229)
144 cd07606 BAR_SFC_plant The Bin/ 96.8 0.39 8.5E-06 44.4 22.4 172 153-328 7-197 (202)
145 cd07597 BAR_SNX8 The Bin/Amphi 96.8 0.28 6.1E-06 46.8 20.5 220 153-392 14-235 (246)
146 cd07636 BAR_GRAF The Bin/Amphi 96.8 0.44 9.4E-06 44.2 21.8 174 152-329 7-202 (207)
147 cd07599 BAR_Rvs167p The Bin/Am 96.8 0.41 8.9E-06 44.5 20.7 97 229-325 96-207 (216)
148 cd07600 BAR_Gvp36 The Bin/Amph 96.8 0.13 2.8E-06 48.9 17.4 129 199-331 102-239 (242)
149 cd07632 BAR_APPL2 The Bin/Amph 96.6 0.64 1.4E-05 43.0 21.2 173 157-333 12-205 (215)
150 cd07635 BAR_GRAF2 The Bin/Amph 96.3 0.98 2.1E-05 41.9 22.5 174 153-330 8-203 (207)
151 cd07634 BAR_GAP10-like The Bin 96.2 1 2.3E-05 41.7 21.7 172 154-329 9-202 (207)
152 cd07633 BAR_OPHN1 The Bin/Amph 95.9 1.4 3E-05 40.7 21.7 172 154-329 9-202 (207)
153 cd07630 BAR_SNX_like The Bin/A 95.9 1.4 3.1E-05 40.6 23.4 43 345-387 141-183 (198)
154 KOG1118|consensus 95.5 0.73 1.6E-05 44.8 15.3 145 188-335 88-236 (366)
155 KOG3771|consensus 95.3 4 8.7E-05 42.0 20.7 108 229-337 108-230 (460)
156 PF06456 Arfaptin: Arfaptin-li 95.0 3.2 6.9E-05 39.2 21.7 164 151-326 34-228 (229)
157 cd06889 PX_NoxO1 The phosphoin 94.9 0.011 2.5E-07 50.0 1.3 68 37-112 40-119 (121)
158 KOG2273|consensus 94.7 6.7 0.00014 41.2 23.7 43 350-392 443-487 (503)
159 cd07663 BAR_SNX5 The Bin/Amphi 94.4 4.4 9.4E-05 38.0 20.2 43 346-388 160-202 (218)
160 PF10455 BAR_2: Bin/amphiphysi 94.2 2.1 4.5E-05 41.8 15.2 131 199-334 147-287 (289)
161 cd06896 PX_PI3K_C2_gamma The p 94.2 0.065 1.4E-06 43.5 4.0 82 21-112 13-99 (101)
162 cd07662 BAR_SNX6 The Bin/Amphi 93.9 5.7 0.00012 37.1 19.1 42 346-387 160-201 (218)
163 KOG3784|consensus 92.5 0.072 1.6E-06 53.3 2.1 60 54-114 29-102 (407)
164 cd07660 BAR_Arfaptin The Bin/A 92.4 9 0.00019 35.4 21.9 137 187-331 41-198 (201)
165 cd07621 BAR_SNX5_6 The Bin/Amp 92.0 11 0.00023 35.4 21.6 42 346-387 161-202 (219)
166 cd00011 BAR_Arfaptin_like The 91.3 12 0.00026 34.6 21.6 135 188-330 42-200 (203)
167 cd07642 BAR_ASAP2 The Bin/Amph 91.2 13 0.00028 34.7 22.5 175 160-335 15-213 (215)
168 PF03114 BAR: BAR domain; Int 89.8 15 0.00033 33.2 23.0 51 342-392 167-217 (229)
169 cd07604 BAR_ASAPs The Bin/Amph 88.7 21 0.00045 33.4 20.0 49 343-391 152-200 (215)
170 cd07297 PX_PLD2 The phosphoino 88.6 0.43 9.3E-06 40.7 3.0 35 79-113 95-129 (130)
171 cd07291 PX_SNX5 The phosphoino 88.2 0.57 1.2E-05 40.6 3.6 30 36-65 40-71 (141)
172 cd07641 BAR_ASAP1 The Bin/Amph 88.0 23 0.00049 33.0 22.6 39 294-332 172-210 (215)
173 cd07282 PX_SNX2 The phosphoino 87.9 0.37 8.1E-06 41.0 2.3 45 22-66 20-74 (124)
174 cd06891 PX_Vps17p The phosphoi 87.3 0.41 8.8E-06 41.7 2.2 35 33-67 66-100 (140)
175 cd07640 BAR_ASAP3 The Bin/Amph 86.5 27 0.00058 32.3 21.1 170 162-332 17-208 (213)
176 cd07283 PX_SNX30 The phosphoin 86.3 0.49 1.1E-05 39.8 2.1 32 35-66 41-72 (116)
177 cd06863 PX_Atg24p The phosphoi 83.8 0.72 1.6E-05 38.7 2.0 43 23-65 22-72 (118)
178 cd07292 PX_SNX6 The phosphoino 83.8 1.1 2.3E-05 38.9 3.0 30 36-65 40-71 (141)
179 cd07284 PX_SNX7 The phosphoino 83.4 0.51 1.1E-05 39.7 1.0 32 35-66 41-72 (116)
180 cd07286 PX_SNX18 The phosphoin 83.2 0.58 1.3E-05 40.1 1.3 53 14-67 15-68 (127)
181 cd06894 PX_SNX3_like The phosp 83.0 0.8 1.7E-05 38.9 2.0 43 22-65 21-71 (123)
182 PF10925 DUF2680: Protein of u 83.0 3 6.4E-05 30.8 4.7 41 315-355 8-48 (59)
183 KOG2101|consensus 82.4 0.72 1.6E-05 46.3 1.8 56 53-108 154-232 (362)
184 cd06867 PX_SNX41_42 The phosph 82.2 0.71 1.5E-05 38.4 1.4 43 23-66 21-63 (112)
185 cd06861 PX_Vps5p The phosphoin 82.0 1 2.2E-05 37.5 2.2 46 22-67 20-73 (112)
186 KOG0521|consensus 81.9 93 0.002 34.8 20.8 132 191-323 67-209 (785)
187 PF07139 DUF1387: Protein of u 81.5 27 0.00058 34.2 12.0 74 274-373 182-262 (302)
188 PF06730 FAM92: FAM92 protein; 81.5 47 0.001 31.1 22.5 95 281-391 100-197 (219)
189 cd07634 BAR_GAP10-like The Bin 81.3 46 0.001 30.9 20.6 36 356-391 160-195 (207)
190 cd06865 PX_SNX_like The phosph 81.1 1 2.2E-05 38.0 2.0 43 23-65 26-76 (120)
191 cd06868 PX_HS1BP3 The phosphoi 80.5 1 2.2E-05 38.2 1.7 34 34-67 50-83 (120)
192 cd07293 PX_SNX3 The phosphoino 80.4 1.2 2.6E-05 37.8 2.2 30 35-65 42-71 (123)
193 cd06892 PX_SNX5_like The phosp 79.6 0.97 2.1E-05 39.3 1.4 30 36-65 40-71 (141)
194 cd06860 PX_SNX7_30_like The ph 78.8 1.5 3.3E-05 36.7 2.3 30 36-65 42-71 (116)
195 cd07294 PX_SNX12 The phosphoin 77.2 1.7 3.7E-05 37.4 2.2 58 7-65 3-73 (132)
196 cd07603 BAR_ACAPs The Bin/Amph 75.4 68 0.0015 29.6 20.9 48 344-391 141-188 (200)
197 cd06879 PX_UP1_plant The phosp 75.1 2 4.3E-05 37.3 2.0 45 23-67 49-99 (138)
198 cd06866 PX_SNX8_Mvp1p_like The 74.9 1.8 3.9E-05 35.7 1.6 46 22-67 20-66 (105)
199 cd07636 BAR_GRAF The Bin/Amphi 74.5 74 0.0016 29.6 22.1 36 356-391 160-195 (207)
200 cd07280 PX_YPT35 The phosphoin 73.5 2.4 5.1E-05 35.7 2.1 45 22-66 24-77 (120)
201 cd06862 PX_SNX9_18_like The ph 72.4 2.2 4.7E-05 36.4 1.6 45 23-67 23-68 (125)
202 PF08397 IMD: IRSp53/MIM homol 72.0 84 0.0018 29.1 21.1 146 187-332 35-206 (219)
203 cd07602 BAR_RhoGAP_OPHN1-like 71.9 86 0.0019 29.2 20.9 37 355-391 159-195 (207)
204 PF13805 Pil1: Eisosome compon 70.3 1.1E+02 0.0024 29.7 23.2 125 188-327 83-218 (271)
205 cd07281 PX_SNX1 The phosphoino 68.2 4.2 9.1E-05 34.4 2.5 45 22-66 20-74 (124)
206 cd06864 PX_SNX4 The phosphoino 68.0 3.9 8.5E-05 35.0 2.3 32 34-65 49-80 (129)
207 KOG1451|consensus 64.5 2.1E+02 0.0046 30.9 24.4 131 202-332 83-222 (812)
208 cd06859 PX_SNX1_2_like The pho 63.9 6.1 0.00013 32.6 2.6 46 22-67 20-73 (114)
209 cd07639 BAR_ACAP1 The Bin/Amph 63.2 1.3E+02 0.0027 27.9 19.1 37 355-391 152-188 (200)
210 KOG3725|consensus 61.6 1.6E+02 0.0034 28.4 13.5 60 274-334 203-262 (375)
211 cd06885 PX_SNX17_31 The phosph 60.4 4.8 0.0001 33.0 1.4 44 23-66 21-64 (104)
212 cd06898 PX_SNX10 The phosphoin 59.7 5.9 0.00013 33.0 1.8 33 35-67 41-73 (113)
213 cd06869 PX_UP2_fungi The phosp 59.0 4.9 0.00011 34.0 1.2 44 23-66 36-85 (119)
214 PF06013 WXG100: Proteins of 1 58.9 69 0.0015 23.8 7.7 73 148-220 5-81 (86)
215 cd07635 BAR_GRAF2 The Bin/Amph 57.4 1.6E+02 0.0036 27.3 20.9 36 356-391 160-195 (207)
216 cd07601 BAR_APPL The Bin/Amphi 56.1 1.8E+02 0.0038 27.3 21.2 37 355-391 158-194 (215)
217 smart00312 PX PhoX homologous 55.6 5.9 0.00013 31.7 1.1 44 23-66 17-63 (105)
218 cd07285 PX_SNX9 The phosphoino 55.2 5.3 0.00011 34.2 0.8 33 35-67 36-69 (126)
219 cd07637 BAR_ACAP3 The Bin/Amph 54.0 1.8E+02 0.0039 26.8 20.2 49 343-391 140-188 (200)
220 cd06897 PX_SNARE The phosphoin 53.7 7.8 0.00017 31.6 1.6 45 22-66 17-64 (108)
221 cd07633 BAR_OPHN1 The Bin/Amph 53.6 1.9E+02 0.0041 26.9 20.9 34 356-391 162-195 (207)
222 cd07649 F-BAR_GAS7 The F-BAR ( 53.3 2E+02 0.0044 27.1 20.5 55 187-241 37-97 (233)
223 PF00140 Sigma70_r1_2: Sigma-7 51.9 6.6 0.00014 25.9 0.7 21 87-107 3-23 (37)
224 cd06886 PX_SNX27 The phosphoin 51.3 8.9 0.00019 31.6 1.5 44 22-65 23-66 (106)
225 cd07295 PX_Grd19 The phosphoin 49.7 6.7 0.00015 32.9 0.5 33 34-66 41-73 (116)
226 cd07276 PX_SNX16 The phosphoin 49.5 9.5 0.00021 31.5 1.4 45 22-67 22-70 (110)
227 KOG0577|consensus 49.2 4E+02 0.0086 29.3 18.6 95 287-391 551-645 (948)
228 cd07646 I-BAR_IMD_IRSp53 Inver 49.1 2.4E+02 0.0052 26.7 19.2 35 187-221 47-87 (232)
229 PF09425 CCT_2: Divergent CCT 48.6 13 0.00029 23.0 1.6 11 83-93 3-13 (27)
230 KOG2528|consensus 48.4 13 0.00029 38.1 2.4 111 202-325 364-488 (490)
231 cd07287 PX_RPK118_like The pho 47.9 13 0.00029 31.2 2.1 33 35-67 42-79 (118)
232 cd06877 PX_SNX14 The phosphoin 46.7 12 0.00026 31.5 1.7 46 22-67 24-80 (119)
233 cd07659 BAR_PICK1 The Bin/Amph 46.5 2.5E+02 0.0054 26.2 20.5 136 187-326 41-206 (215)
234 cd07632 BAR_APPL2 The Bin/Amph 45.2 2.6E+02 0.0057 26.1 19.6 32 360-391 163-194 (215)
235 cd06881 PX_SNX15_like The phos 43.9 12 0.00025 31.4 1.1 58 10-67 7-78 (117)
236 COG3937 Uncharacterized conser 42.9 71 0.0015 26.5 5.4 47 304-350 3-49 (108)
237 cd07279 PX_SNX20_21_like The p 42.7 17 0.00036 30.1 1.9 45 23-67 21-73 (112)
238 cd07680 F-BAR_PACSIN1 The F-BA 40.7 3.4E+02 0.0074 26.1 21.3 37 201-237 61-97 (258)
239 cd07301 PX_SNX21 The phosphoin 40.1 18 0.00038 30.1 1.6 46 22-67 20-73 (112)
240 cd06093 PX_domain The Phox Hom 40.0 17 0.00036 28.6 1.5 45 23-67 20-68 (106)
241 cd07638 BAR_ACAP2 The Bin/Amph 39.9 3.1E+02 0.0066 25.4 20.6 37 355-391 152-188 (200)
242 cd06876 PX_MDM1p The phosphoin 39.8 15 0.00032 31.4 1.2 46 22-67 40-93 (133)
243 cd07641 BAR_ASAP1 The Bin/Amph 38.8 3.3E+02 0.0072 25.5 21.7 34 356-391 167-200 (215)
244 cd07651 F-BAR_PombeCdc15_like 38.7 3.3E+02 0.0071 25.4 22.7 78 163-241 11-97 (236)
245 cd07288 PX_SNX15 The phosphoin 36.8 28 0.00061 29.3 2.4 33 35-67 42-79 (118)
246 cd06883 PX_PI3K_C2 The phospho 36.0 20 0.00044 29.5 1.4 45 22-66 18-67 (109)
247 cd07650 F-BAR_Syp1p_like The F 35.6 3.7E+02 0.0081 25.1 23.0 61 275-335 147-207 (228)
248 cd07277 PX_RUN The phosphoinos 35.4 24 0.00051 29.7 1.7 47 21-67 19-68 (118)
249 cd06873 PX_SNX13 The phosphoin 34.6 25 0.00054 29.5 1.7 33 35-67 45-77 (120)
250 cd07298 PX_RICS The phosphoino 34.5 39 0.00084 28.2 2.7 42 52-97 40-98 (115)
251 PF13035 DUF3896: Protein of u 34.5 1.3E+02 0.0028 21.6 5.0 42 325-367 16-58 (61)
252 cd07300 PX_SNX20 The phosphoin 33.7 27 0.00059 29.1 1.8 35 33-67 38-73 (114)
253 cd07647 F-BAR_PSTPIP The F-BAR 32.0 4.3E+02 0.0093 24.7 19.4 37 187-223 37-79 (239)
254 KOG2150|consensus 32.0 6.7E+02 0.015 27.0 15.8 57 283-351 124-183 (575)
255 KOG2527|consensus 31.9 14 0.00031 31.8 -0.2 62 36-99 59-134 (144)
256 KOG3410|consensus 30.7 1.1E+02 0.0024 25.8 4.8 44 337-380 63-106 (120)
257 cd07645 I-BAR_IMD_BAIAP2L1 Inv 30.3 4.7E+02 0.01 24.6 20.0 61 158-218 10-82 (226)
258 COG4842 Uncharacterized protei 30.2 2.9E+02 0.0062 22.1 8.5 73 150-222 10-86 (97)
259 cd07606 BAR_SFC_plant The Bin/ 29.6 4.5E+02 0.0098 24.2 23.3 36 356-391 156-191 (202)
260 PF15272 BBP1_C: Spindle pole 28.4 4.8E+02 0.01 24.1 12.6 62 204-265 19-80 (196)
261 PLN02866 phospholipase D 28.3 39 0.00085 38.6 2.4 41 73-114 131-171 (1068)
262 cd06884 PX_PI3K_C2_68D The pho 28.1 28 0.00062 28.9 1.0 76 23-100 21-103 (111)
263 cd07653 F-BAR_CIP4-like The F- 26.5 5.3E+02 0.011 24.0 24.8 39 202-240 63-101 (251)
264 cd06882 PX_p40phox The phospho 25.0 41 0.00088 28.5 1.4 45 23-67 23-79 (123)
265 PF06160 EzrA: Septation ring 24.3 8.9E+02 0.019 25.9 23.9 27 274-300 278-304 (560)
266 cd07289 PX_PI3K_C2_alpha The p 23.2 46 0.00099 27.7 1.3 44 23-66 19-67 (109)
267 cd07290 PX_PI3K_C2_beta The ph 23.0 49 0.0011 27.5 1.5 15 53-67 32-46 (109)
268 smart00721 BAR BAR domain. 22.5 5.9E+02 0.013 23.1 23.2 51 342-392 176-226 (239)
269 TIGR03545 conserved hypothetic 21.4 7.6E+02 0.017 26.5 10.4 31 305-335 278-308 (555)
270 COG5123 TOA2 Transcription ini 20.9 2.7E+02 0.0058 22.9 5.2 45 317-361 5-51 (113)
271 cd06887 PX_p47phox The phospho 20.2 39 0.00084 28.5 0.3 14 54-67 34-47 (118)
272 cd07653 F-BAR_CIP4-like The F- 20.0 7.1E+02 0.015 23.1 19.3 37 289-325 205-241 (251)
No 1
>KOG2528|consensus
Probab=100.00 E-value=4.6e-55 Score=425.78 Aligned_cols=251 Identities=38% Similarity=0.634 Sum_probs=234.3
Q ss_pred cccccccCCCceEEEeeCCccccccccccccchhhhhcc--ccc----eEecCCCCcccccC--------------Cccc
Q psy17920 12 ELIGLKVMDHILSISHFNLEQETESCSRFIHGLDSAVKS--LVA----VVADQTKKCQTLYK--------------REYQ 71 (393)
Q Consensus 12 ~~~~~~~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~--~~~----~v~rry~df~~l~~--------------P~K~ 71 (393)
-||.|+.....|.+.|.||.|... .+|+++|+++ -|. .|.|||.+|.|||+ |+|+
T Consensus 175 ~g~qw~~~~~~~~c~v~~p~k~sk-----~kg~ks~i~y~ltpt~t~~~v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq 249 (490)
T KOG2528|consen 175 RGPQWQANPSPFRCVVDDPKKESK-----FKGLKSYIAYQLTPTHTNISVSRRYKHFDWLYERLLLKFPLIPVPPLPDKQ 249 (490)
T ss_pred CCcccccCCCCeeEEecCcccccc-----cccchheeEeeecccccCcchhhcccccHHHHHHHHhhcccccCCCCCccc
Confidence 478999999999999999999987 6799999973 122 59999999999999 9999
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc-chhhHhhhhhhhhccccccchhhhhccCCCCCCCcc
Q psy17920 72 KIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT-DEKRWKAGKRMAEKDNLLGPSLFLAIETPERSISHF 150 (393)
Q Consensus 72 ~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~-~e~~wk~~~~~ae~~~~~g~~~~~~v~~~~~~~~~~ 150 (393)
++|||.++||++||++|+-|+|++|+||||++|++|++||+|. ||++||.+||+||+|++.| .|+.++. |. .++++
T Consensus 250 ~~gr~Ee~fi~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~~dek~Wk~GKRkAEkDe~~g-~~~~~~~-p~-~ld~~ 326 (490)
T KOG2528|consen 250 VTGRFEEDFIEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCPTDEKAWKQGKRKAEKDELVG-NFLLTIS-PA-PLDLQ 326 (490)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCCcccccccccccccccCCccc-ceeeccC-Cc-ccchH
Confidence 9999999999999999999999999999999999999999997 9999999999999999999 8999998 64 49999
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------c---hh-HHHHHHHHHHHHHHH
Q psy17920 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-----------D---RS-HLRDALKKTGDTYNE 215 (393)
Q Consensus 151 ~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-----------d---~s-~L~~al~~lg~~~~~ 215 (393)
+++..++.|++|+++||+++.+|..+++.+++++.+.+.++|+++|. | ++ .|+.|+..+|.+|..
T Consensus 327 ~ve~~ve~~~~f~k~md~~~~~l~~~~~~~~k~~~~~~kke~qk~g~a~~~l~~~f~~d~~~~s~~L~~ai~~~g~~y~~ 406 (490)
T KOG2528|consen 327 EVEMQVERFKRFTKKMDDAVRQLNTTANEFWKRKVGGFKKEYQKMGSAFQTLAQAFEIDPTVDSRPLNEAIGLTGDAYHE 406 (490)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCccccccchhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999988 1 12 499999999999999
Q ss_pred HHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhcc
Q psy17920 216 LGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENK 270 (393)
Q Consensus 216 i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k 270 (393)
||+++++|+++|+.+++|.|..|.+.++.++||++.|+.|++|+++++++..+|+
T Consensus 407 Ig~lfa~qpk~Dl~p~~d~l~~y~G~l~nfpDII~~hK~A~~k~kes~~~~~~g~ 461 (490)
T KOG2528|consen 407 IGELFAEQPKQDLDPVMDLLVLYQGHLQNFPDIIHVHKGALAKVKESEQLVAEGF 461 (490)
T ss_pred HHHHhhcccccchhHHHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhH
Confidence 9999999999999999999999999999999999999999999999887766663
No 2
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=100.00 E-value=1.3e-48 Score=364.61 Aligned_cols=210 Identities=48% Similarity=0.812 Sum_probs=191.4
Q ss_pred chhhHhhhhhhhhccccccchhhhhccCCC-CCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 115 DEKRWKAGKRMAEKDNLLGPSLFLAIETPE-RSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQ 193 (393)
Q Consensus 115 ~e~~wk~~~~~ae~~~~~g~~~~~~v~~~~-~~~~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~ 193 (393)
|++.||.|||+||+|+++|+.||.+|+.|. .++++.+++..+|.|++|+++|++++++|..+++++++++.+.|.++|+
T Consensus 1 DeK~WK~GKRkAEKDe~vG~~Ff~~i~~P~~~~ld~~~ve~~~e~f~~F~k~Md~sv~~l~~~~~~~~kk~~~~~kkE~q 80 (237)
T PF10456_consen 1 DEKEWKQGKRKAEKDELVGANFFLTIEVPEAKPLDPQDVESQVESFKKFTKSMDDSVKQLSSVANEFAKKHQGPFKKEYQ 80 (237)
T ss_dssp SCCHHHHHHHHHHT--S-GGGGGGGEE-ESS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ChhhhhcCCchhhhhhhhhhHHhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 689999999999999999999999999665 8899999999999999999999999999999999999999999999999
Q ss_pred Hhcc-----------c----hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHH
Q psy17920 194 KIGI-----------D----RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNK 258 (393)
Q Consensus 194 ~lg~-----------d----~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k 258 (393)
++|. | +..|++||+.+|++|..||+++++|++.|+.++.|.|++|.|+++++|++++.|+++++|
T Consensus 81 kiG~af~~Ls~afe~d~~~~~~~L~~Al~~tg~~y~~Ig~l~~~Qpk~D~~pl~d~L~~Y~GlL~~~pdii~~hk~A~~k 160 (237)
T PF10456_consen 81 KIGQAFQSLSQAFELDQQQASMPLTNALKHTGDTYEEIGDLFAEQPKNDLIPLLDCLKEYRGLLSNFPDIISVHKGALQK 160 (237)
T ss_dssp HHHHHHHHHHHHHTTS--SSHCHHHHHHHHHHHHHHHHHHHHHTSGGGTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhHhhCccHHHHHHHHHHH
Confidence 9998 2 235999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhhhhc
Q psy17920 259 KREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMTTEN 338 (393)
Q Consensus 259 ~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~~e~ 338 (393)
+++ |++|++||
T Consensus 161 ~ke---------------------------------------------------------------------~~kl~~e~ 171 (237)
T PF10456_consen 161 VKE---------------------------------------------------------------------CEKLSDEG 171 (237)
T ss_dssp CTC---------------------------------------------------------------------HHHHHHTT
T ss_pred HHH---------------------------------------------------------------------HHHHHhcc
Confidence 886 45667899
Q ss_pred cCCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy17920 339 KMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKST 393 (393)
Q Consensus 339 k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~~ 393 (393)
||+++++++|++||++||||++|||+|||++|+.||+.+|++||++||+|||+|+
T Consensus 172 K~~~~~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~ 226 (237)
T PF10456_consen 172 KMSQQEAEEVQRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIA 226 (237)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999984
No 3
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=4.2e-45 Score=327.15 Aligned_cols=182 Identities=35% Similarity=0.619 Sum_probs=171.7
Q ss_pred CCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------c----hhHHHHHHH
Q psy17920 143 PERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-----------D----RSHLRDALK 207 (393)
Q Consensus 143 ~~~~~~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-----------d----~s~L~~al~ 207 (393)
|..+++++++++.+|.|++|+++|++++.+|..+++++++|+.+.|.++|+++|. | .+.|++|+.
T Consensus 1 P~~~Ld~~~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaF~~d~~~~s~~L~~Av~ 80 (207)
T cd07670 1 PSAVLDLQDVESRIDGFKAFTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQAFELDQQAFSAGLNQAIA 80 (207)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHccCCcccchHHHHHHH
Confidence 4456889999999999999999999999999999999999999999999999998 1 235999999
Q ss_pred HHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q psy17920 208 KTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVS 287 (393)
Q Consensus 208 ~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is 287 (393)
.+|++|+.||+++++|+++|+.||+|.|++|.|+|+++||+++.|++|++|+||
T Consensus 81 ~tg~~y~~IG~~faeQpk~Dl~Pl~d~L~~Y~G~L~~fPDii~v~KgA~~KvKE-------------------------- 134 (207)
T cd07670 81 FTGEAYEAIGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIHVQKGALTKVKE-------------------------- 134 (207)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCccccCCchHHHhHHHHHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999998887777765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHH
Q psy17920 288 YALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFH 367 (393)
Q Consensus 288 ~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~ 367 (393)
|+++++||||+++++++|++|||+||||++|||||||
T Consensus 135 -------------------------------------------~~k~~~egkm~~~~~~~v~~R~dviSya~~AEm~HFh 171 (207)
T cd07670 135 -------------------------------------------SKKHVEEGKMELQKADGIQDRCNIISFATLAEIHHFH 171 (207)
T ss_pred -------------------------------------------HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy17920 368 QEQVSQINAAMKSFLTEQINFYQKST 393 (393)
Q Consensus 368 ~~~~~d~~~~~~~~l~~q~~fy~~~~ 393 (393)
++|++|||++|++||++||+|||+|+
T Consensus 172 ~~r~~d~k~~M~~yL~~QI~Fyq~v~ 197 (207)
T cd07670 172 KIRVRDFKSQMQHFLQQQIRFFQKVT 197 (207)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999984
No 4
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=100.00 E-value=8.3e-44 Score=319.89 Aligned_cols=182 Identities=32% Similarity=0.591 Sum_probs=171.3
Q ss_pred CCCCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------c----hhHHHHHHH
Q psy17920 143 PERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-----------D----RSHLRDALK 207 (393)
Q Consensus 143 ~~~~~~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-----------d----~s~L~~al~ 207 (393)
|+.+++++++++.+|.|++|+++||++++.|..++++.++|+.+.+.++|+++|. | ++.|++|+.
T Consensus 1 p~~~Ld~~~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~kkEyqkiG~af~~LsqaFe~d~~~~s~~L~~Av~ 80 (207)
T cd07669 1 PTEHQDLQDVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAISHSFQLDPPYSSEALNNAIS 80 (207)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 3456889999999999999999999999999999999999999999999999998 1 234999999
Q ss_pred HHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q psy17920 208 KTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVS 287 (393)
Q Consensus 208 ~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is 287 (393)
.+|++|+.||+++++|++.|+.||.|.|++|.|+|+++||+++.|++|+.|++|
T Consensus 81 ~tG~~y~~IG~~faeQpk~D~~pl~d~L~~Y~GlL~~fPDii~v~K~A~~KvkE-------------------------- 134 (207)
T cd07669 81 HTGRTYEAVGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKE-------------------------- 134 (207)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHhCcccCCccHHHHHHHHHHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999988777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHH
Q psy17920 288 YALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFH 367 (393)
Q Consensus 288 ~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~ 367 (393)
|+++++||||+++++++|++||++||||++|||||||
T Consensus 135 -------------------------------------------~~k~~~e~Km~~~~~~~v~~R~~~isya~~AEm~HFh 171 (207)
T cd07669 135 -------------------------------------------SQRMSDEGRMDQDEADGIRKRCRVVGFALQAEMNHFH 171 (207)
T ss_pred -------------------------------------------HHHhhHHhhhhhhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 6677789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy17920 368 QEQVSQINAAMKSFLTEQINFYQKST 393 (393)
Q Consensus 368 ~~~~~d~~~~~~~~l~~q~~fy~~~~ 393 (393)
++|+.|||++|++||++||+||++|+
T Consensus 172 ~~r~~d~k~~M~~yL~eQi~Fyq~v~ 197 (207)
T cd07669 172 QRRELDFKQMMQHYLRQQIIFYQRVS 197 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999984
No 5
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=100.00 E-value=8.5e-44 Score=319.94 Aligned_cols=180 Identities=36% Similarity=0.641 Sum_probs=169.9
Q ss_pred CCCCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------c----hhHHHHHHHHH
Q psy17920 145 RSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-----------D----RSHLRDALKKT 209 (393)
Q Consensus 145 ~~~~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-----------d----~s~L~~al~~l 209 (393)
.+++++++++.+|.|++|+++||+++++|..++++.++|+.+.+.++|+++|. | ++.|++|+..+
T Consensus 3 ~~Ld~~~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaFe~d~~~~~~~L~~Ai~~t 82 (210)
T cd07668 3 PDLDLVEIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSTSGYQGETDLNDAITEA 82 (210)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999998 1 23599999999
Q ss_pred HHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q psy17920 210 GDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYA 289 (393)
Q Consensus 210 g~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~ 289 (393)
|.+|+.||+++++||+.|+.||+|.|++|.|+|+++||+++.|++|+.|+||
T Consensus 83 g~~y~~IG~~faeQpk~Dl~pl~d~L~~Y~G~L~~fPDIi~v~KgA~~KvkE---------------------------- 134 (210)
T cd07668 83 GKTYEEIASLVAEQPKKDLHFLMETNHEYKGFLGCFPDIIGAHKGAIEKVKE---------------------------- 134 (210)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhCccccCccHHHHHHHHHHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHHHH
Q psy17920 290 LLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQE 369 (393)
Q Consensus 290 v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~ 369 (393)
|+++++||||+++++++|++|||+||||++|||||||++
T Consensus 135 -----------------------------------------~~k~~~egkm~~~~~~~v~~R~dviSya~~AEm~HFh~~ 173 (210)
T cd07668 135 -----------------------------------------SDKLVATSKITLQDKQNMVKRVSTMSYALQAEMNHFHSN 173 (210)
T ss_pred -----------------------------------------HHHHhhhccchhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 777788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcC
Q psy17920 370 QVSQINAAMKSFLTEQINFYQKST 393 (393)
Q Consensus 370 ~~~d~~~~~~~~l~~q~~fy~~~~ 393 (393)
|++|||++|++||++||+|||+|+
T Consensus 174 r~~d~k~~M~~yL~eQi~Fyq~v~ 197 (210)
T cd07668 174 RIYDYNSVIRLYLEQQVQFYETIA 197 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999984
No 6
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=100.00 E-value=2.4e-34 Score=262.38 Aligned_cols=181 Identities=45% Similarity=0.784 Sum_probs=173.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------c----hhHHHHHHHHHHHHHHHH
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-----------D----RSHLRDALKKTGDTYNEL 216 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-----------d----~s~L~~al~~lg~~~~~i 216 (393)
++..+|.|++|+++||+++++|..+++.+++|+.+.+.++|+++|. | ++.|++||+++|+++++|
T Consensus 2 ve~~~d~f~~f~~~md~svk~l~~~~~~~~kk~~~~~kkeyqk~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~I 81 (199)
T cd07626 2 VEQQVDAFKKFVKSMDDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEI 81 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999888 1 345999999999999999
Q ss_pred HHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 217 GKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINH 296 (393)
Q Consensus 217 ~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~r 296 (393)
++++++||+.|+.+|.|.|++|.|+++++|++++.|++++.|+|+++++..+||++..++++++++|+.||+++++||+|
T Consensus 82 g~l~~eQa~~D~~~l~E~L~eY~gll~~~pdi~~~~k~al~K~kE~~r~~~egk~~~~e~~ev~~r~d~IS~~~~aE~~~ 161 (199)
T cd07626 82 GELFAEQPKHDLIPLLDGLHEYKGLLSTFPDIIGVHKGAVQKVKECERLVDEGKMSSAELEEVKRRTDVISYALLAEINH 161 (199)
T ss_pred HHHHHHhhHhhHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 297 FHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 297 F~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
||.+|+.|||.+|+.||+.||+||++++..++.+..
T Consensus 162 F~~eRv~Dfk~~m~~yLe~qI~fyqqI~~kl~~a~~ 197 (199)
T cd07626 162 FHRERVRDFKSMMRNYLQQQIEFYQKIAAKLEEALA 197 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988764
No 7
>KOG2273|consensus
Probab=99.95 E-value=2.1e-26 Score=239.83 Aligned_cols=311 Identities=18% Similarity=0.268 Sum_probs=221.4
Q ss_pred ceEEEeeCCc-cccccccc-cccchhhhhc--ccc---ceEecCCCCcccccC--------------Ccccccc-----C
Q psy17920 22 ILSISHFNLE-QETESCSR-FIHGLDSAVK--SLV---AVVADQTKKCQTLYK--------------REYQKIG-----R 75 (393)
Q Consensus 22 ~~~i~v~~p~-k~~~~~s~-f~~~~~~~~~--~~~---~~v~rry~df~~l~~--------------P~K~~~g-----~ 75 (393)
.+.|++++|+ ..+++.+. +.+.+.+-.. .+. ..|.|||+||.|||+ |+|.+.+ +
T Consensus 109 ~~~i~~~~~~~~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~~~ 188 (503)
T KOG2273|consen 109 DLSITVSDPEPEIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSGDS 188 (503)
T ss_pred heeeecCCCccccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhccccCC
Confidence 3778888888 55542221 1122222111 111 279999999999999 8888764 5
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCCccccccccccccccch-hhHhhhhhhhhccccccchhhhhcc-CC-----CCCCC
Q psy17920 76 YEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDE-KRWKAGKRMAEKDNLLGPSLFLAIE-TP-----ERSIS 148 (393)
Q Consensus 76 ~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~e-~~wk~~~~~ae~~~~~g~~~~~~v~-~~-----~~~~~ 148 (393)
|+++|+++||++|++||+||+.||+|+.+++|+.||+.+.. ..|....+........+..++..+. .+ .....
T Consensus 189 ~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 268 (503)
T KOG2273|consen 189 FSDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDSKELPTDVNSRFKSGADLLSKQFFGETSSTDAVSLLPSFKK 268 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcccccccchhhHHHHhcchhhccccccCcccchhhhhccccccc
Confidence 89999999999999999999999999999999999998732 1111111110000011111111111 00 01122
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------c--hh-HHHHHHHHHHHHHHHHHH
Q psy17920 149 HFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------D--RS-HLRDALKKTGDTYNELGK 218 (393)
Q Consensus 149 ~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d--~s-~L~~al~~lg~~~~~i~~ 218 (393)
+.+.+.++.....++..|+..+.++.+...++... ...+...|.++|. . .. +|+.++..++.....++.
T Consensus 269 ~~~~~~~f~e~~~~i~~l~~~l~~l~~~~~~~~~~-~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 347 (503)
T KOG2273|consen 269 FKESDKEFTEKKEKIDKLEQQLKKLSKQVQRLVKR-RRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIESLSK 347 (503)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Confidence 34457788888889999999999988888886543 3456666666665 1 33 799999999999999999
Q ss_pred HHhcC-ccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH-----------Hhhhh-------cccc-------
Q psy17920 219 LFEEQ-PKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYE-----------KMTTE-------NKME------- 272 (393)
Q Consensus 219 ~~~~Q-~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~e-----------rl~~e-------~k~~------- 272 (393)
+...+ +.++...+.+.+++|.+++.+++.++..+.+++.++.++. ++... .++.
T Consensus 348 ~~e~~~~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~ 427 (503)
T KOG2273|consen 348 LLEKLTAEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIE 427 (503)
T ss_pred HHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHH
Confidence 99999 9999999999999999999999999999877765554431 11100 1111
Q ss_pred --HHHHHHHH-----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHh
Q psy17920 273 --ANRLQEVL-----KRTD--TVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 273 --~~~ve~~~-----~~~e--~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~ 333 (393)
.+.+.... ++.+ .|+..++.|+.+|...|..||+.+++.|++.+++++.+++..|.+.++.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~~~~d~~~~~~~~~d~~i~~~~~~l~~W~~~~~~ 497 (503)
T KOG2273|consen 428 KLEEKVNELEELLALKELELDEISERIRAELERFEESRRQDFKESLKKYADLHVEYAEQILKAWEKFLPS 497 (503)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 13334444 4445 8999999999999999999999999999999999999999999999875
No 8
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.94 E-value=7.9e-26 Score=212.06 Aligned_cols=224 Identities=17% Similarity=0.253 Sum_probs=176.9
Q ss_pred CCCccccccccccccccchhhHhhhhhhhhccccccchhhhhccCCCC----CCC-ccchhHhHHHHHHHHHHHHHHHHH
Q psy17920 98 HPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLGPSLFLAIETPER----SIS-HFNLEQETESCSRFIHGLDSAVKS 172 (393)
Q Consensus 98 HPvL~~~~~~~~FL~~~~e~~wk~~~~~ae~~~~~g~~~~~~v~~~~~----~~~-~~~~d~~~d~f~~~l~~L~~~l~~ 172 (393)
||+|+.+++|+.|||+. +|+...++. .|+|++..++.+.. ... ....+.+|...+.|++.|+.+|.+
T Consensus 1 HPvLs~~~~~~~FL~s~---~W~~~~~~~-----~~~g~~~~~~d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ 72 (243)
T cd07666 1 HPTLTFNEDFKIFLTAQ---AWELSSHKK-----QGPGLLSRMGQTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINV 72 (243)
T ss_pred CCccccChHHHHHHcCc---hHHHHHHHh-----cchhhhhhhHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999986 799866543 23333333321110 100 234567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhh
Q psy17920 173 LVAVVADQTKKCQTLYKREYQKIGI-------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSM 245 (393)
Q Consensus 173 L~~~~~~l~kk~~~~~~~~~~~lg~-------d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~ 245 (393)
+.++.++++++. .+|...+..+|+ .+..|.++|+.+|.+++.++....++...+.+.|+++|++|++++.++
T Consensus 73 ieki~~Rl~kr~-~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~sl 151 (243)
T cd07666 73 LDKISQRIYKEQ-REYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETL 151 (243)
T ss_pred hHHHHHHHHHhh-HHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998875 356555555555 345699999999999999998888888888889999999999999999
Q ss_pred hhHHHHHHHHH---HHHHHHH-Hhhhhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17920 246 PDILGLHKDIL---NKKREYE-KMTTENKM-EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFY 320 (393)
Q Consensus 246 ~~v~~~~~~al---~k~re~e-rl~~e~k~-~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~ 320 (393)
++++..|..+. .++++.. +.. ..|. -..++++++.+.++.+..+++|++||+.+|+.|||.++.+|++.||++|
T Consensus 152 K~vlk~R~~~Q~~le~k~e~l~k~~-~dr~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~ 230 (243)
T cd07666 152 MGVIKRRDQIQAELDSKVEALANKK-ADRDLLKEEIEKLEDKVECANNALKADWERWKQNMQTDLRSAFTDMAENNISYY 230 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987653 3333331 111 1121 1278999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHH
Q psy17920 321 QKDILNKKREY 331 (393)
Q Consensus 321 qk~a~~~~~~~ 331 (393)
++++..|+...
T Consensus 231 ~~~~~~We~fl 241 (243)
T cd07666 231 EECLATWESFL 241 (243)
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 9
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.94 E-value=5.1e-28 Score=205.05 Aligned_cols=104 Identities=37% Similarity=0.624 Sum_probs=93.3
Q ss_pred eEEEeeCCccccccccccccchhhhhcc------ccceEecCCCCcccccC---------------CccccccCCChHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKS------LVAVVADQTKKCQTLYK---------------REYQKIGRYEEQFI 81 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~------~~~~v~rry~df~~l~~---------------P~K~~~g~~~~~Fi 81 (393)
|.|.|+||+|++. ..|+++|+.+ ...+|.||||||.||++ |+|++.|+|+++||
T Consensus 1 ~~~~V~dp~k~~~-----~~g~~~Yv~Y~I~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~g~f~~~FI 75 (126)
T cd07285 1 FDCVVADPRKGSK-----MYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVTGRFEEEFI 75 (126)
T ss_pred CEEEEcCcccccC-----CCCCcCeEEEEEEeccCCeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCccccCCCCHHHH
Confidence 5699999999984 2366666652 22479999999999999 89999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccchhhHhhhhhhhhcccc
Q psy17920 82 EHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNL 131 (393)
Q Consensus 82 e~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~e~~wk~~~~~ae~~~~ 131 (393)
++||++|++||++|++||+|+.|++|+.||+++++++|+.+++++|+|+.
T Consensus 76 e~Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~~~~~w~~~~~~~e~~~~ 125 (126)
T cd07285 76 KMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAEKDET 125 (126)
T ss_pred HHHHHHHHHHHHHHHcCcCcCCCcHHHHHhCCCCHHHHHhhChHhhccCC
Confidence 99999999999999999999999999999999999999999999998874
No 10
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.94 E-value=2.3e-27 Score=201.52 Aligned_cols=104 Identities=39% Similarity=0.663 Sum_probs=92.3
Q ss_pred eEEEeeCCccccccccccccchhhhhccc------cceEecCCCCcccccC--------------CccccccCCChHHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKSL------VAVVADQTKKCQTLYK--------------REYQKIGRYEEQFIE 82 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~~------~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie 82 (393)
|.|+|+||+|+|. ..|+++|+++- ...|.|||+||.||++ |+|++.|+|+++||+
T Consensus 1 ~~~~v~dp~k~~~-----~~G~~~Yv~Y~I~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~g~f~~~FIe 75 (127)
T cd07286 1 FQCTIDDPTKQTK-----FKGMKSYISYKLVPSHTGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQATGRFEEDFIS 75 (127)
T ss_pred CeEEeCCCcccCC-----CCCCcCEEEEEEEEecCceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcCCCCCHHHHH
Confidence 5799999999983 11566666531 1379999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcccccccccccccc--chhhHhhhhhhhhcccc
Q psy17920 83 HRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT--DEKRWKAGKRMAEKDNL 131 (393)
Q Consensus 83 ~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~--~e~~wk~~~~~ae~~~~ 131 (393)
+||++|+.||++|+.||+|+.|++|+.||+++ ++++|+.+++++|+|.+
T Consensus 76 ~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~~~~~~~~~~~~~~~~e~~~~ 126 (127)
T cd07286 76 KRRKGLIWWMDHMCSHPVLARCDAFQHFLTCPSTDEKAWKQGKRKAEKDEM 126 (127)
T ss_pred HHHHHHHHHHHHHHcCcccccChHHHHHhcCCcchhHHHhhcchHhhcccc
Confidence 99999999999999999999999999999987 78999999999999875
No 11
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.92 E-value=2.1e-23 Score=194.52 Aligned_cols=224 Identities=14% Similarity=0.163 Sum_probs=173.6
Q ss_pred CCCccccccccccccccchhhHhhhhhhhhccc-cccch--hhhhccCCCCCCCccchhHhHHHHHHHHHHHHHHHHHHH
Q psy17920 98 HPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN-LLGPS--LFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLV 174 (393)
Q Consensus 98 HPvL~~~~~~~~FL~~~~e~~wk~~~~~ae~~~-~~g~~--~~~~v~~~~~~~~~~~~d~~~d~f~~~l~~L~~~l~~L~ 174 (393)
||+|+.+++|+.|||+. +|...++...... ..|++ +++.. ......+.+|..++.|++.|++.|.++.
T Consensus 1 HPvLs~~~~f~~FLts~---dw~a~~kq~~~~~~~~~~~~~~lna~------~kv~~~d~eF~e~~ey~d~l~~~l~~ie 71 (240)
T cd07667 1 HPVLSFNEHFNVFLTAK---DLNAYKKQGIALLSKMGESVKYVTGG------YKLRSRPLEFAAIGDYLDTFALKLGTID 71 (240)
T ss_pred CCccccChHHHHHHcch---hHHHHhhcccccccccchHHHHHHHH------hccCCCChHHHHHHHHHHHHHHhhhhHH
Confidence 99999999999999997 7987665532111 11111 11111 1123345778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc-------hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhh
Q psy17920 175 AVVADQTKKCQTLYKREYQKIGID-------RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPD 247 (393)
Q Consensus 175 ~~~~~l~kk~~~~~~~~~~~lg~d-------~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~ 247 (393)
++.+|++++ ..++..+|.++|.- ++.|..+|..++.+++.++....+..+..-+.+++.|++|..++.|++.
T Consensus 72 ki~~Rv~kr-~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~ 150 (240)
T cd07667 72 RIAQRIIKE-EIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKN 150 (240)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999876 45688888888772 4569999999999999999888777665557899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh--hhhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy17920 248 ILGLHKDILNKKREYEKM--TTENKME--ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKD 323 (393)
Q Consensus 248 v~~~~~~al~k~re~erl--~~e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~ 323 (393)
++..|......+.+.... ....++. ..+++++++++|++++.+++|+++|+..|..|||.+|.+|++.||+||+++
T Consensus 151 vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~~ 230 (240)
T cd07667 151 VLKKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEKC 230 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998876643222221100 0001121 267999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHH
Q psy17920 324 ILNKKREY 331 (393)
Q Consensus 324 a~~~~~~~ 331 (393)
+..|.+..
T Consensus 231 ~~~We~~l 238 (240)
T cd07667 231 LTAWESII 238 (240)
T ss_pred HHHHHHHc
Confidence 99999875
No 12
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=99.90 E-value=4e-22 Score=186.85 Aligned_cols=185 Identities=19% Similarity=0.274 Sum_probs=158.2
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcc-c-hhHHHHHHHHHHHHHHHHHHHH
Q psy17920 149 HFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQ------TLYKREYQKIGI-D-RSHLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 149 ~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~------~~~~~~~~~lg~-d-~s~L~~al~~lg~~~~~i~~~~ 220 (393)
+.+.|++|..-+.|+..|+.+|+.+.+.+..+++.+. +.|+..+..||. + .+.|+++|..+|+++++++.++
T Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~~~ 86 (224)
T cd07623 7 MDETDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQLH 86 (224)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999998887653 245555666666 2 3569999999999999999999
Q ss_pred hcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHH----------HHHHH-HHhhhhcccc------------HHHHH
Q psy17920 221 EEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILN----------KKREY-EKMTTENKME------------ANRLQ 277 (393)
Q Consensus 221 ~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~----------k~re~-erl~~e~k~~------------~~~ve 277 (393)
.+|+..|..+|.++|++|.++++++|++|..|.+++. ++++. +|+...|+.+ +..++
T Consensus 87 ~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~ 166 (224)
T cd07623 87 GEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVD 166 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988764 44443 4554455432 25566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHh
Q psy17920 278 EVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 278 ~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~ 333 (393)
.++.+++.|+..++.|+.||+.+|+.||+.+|..|+++||+++++++..|....+.
T Consensus 167 ~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~pe 222 (224)
T cd07623 167 RGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLPE 222 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77889999999999999999999999999999999999999999999999998764
No 13
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=99.90 E-value=3.9e-22 Score=186.53 Aligned_cols=187 Identities=14% Similarity=0.197 Sum_probs=158.8
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHH
Q psy17920 148 SHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQ------TLYKREYQKIGID--RSHLRDALKKTGDTYNELGKL 219 (393)
Q Consensus 148 ~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~------~~~~~~~~~lg~d--~s~L~~al~~lg~~~~~i~~~ 219 (393)
...+.|++|+.-..|+..|+.+|+.|.+.+..+++.+. ++|++....||.. .+.|+++|+++|++.++++++
T Consensus 16 k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~i~~~ 95 (234)
T cd07665 16 KMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQL 95 (234)
T ss_pred CcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999998887653 2466666777773 356999999999999999999
Q ss_pred HhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH-----------HHhhhhcccc------------HHHH
Q psy17920 220 FEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-----------EKMTTENKME------------ANRL 276 (393)
Q Consensus 220 ~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-----------erl~~e~k~~------------~~~v 276 (393)
++.|+.+|+..|.++|++|+++|+|++.+|..|.+++..|..+ .|+...|+.+ +..+
T Consensus 96 ~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~ 175 (234)
T cd07665 96 HQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRV 175 (234)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988765444433 2333234332 1567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 277 QEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 277 e~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
++++.+|+.|+..++.|+.||+.+|+.||+.++..|++++|+.+++++..|....+++
T Consensus 176 ~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qke~ie~We~flp~~ 233 (234)
T cd07665 176 TQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFLPEA 233 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7788999999999999999999999999999999999999999999999999988754
No 14
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=99.89 E-value=3.1e-21 Score=181.02 Aligned_cols=187 Identities=16% Similarity=0.223 Sum_probs=158.4
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcc-c-hhHHHHHHHHHHHHHHHHHHH
Q psy17920 148 SHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQ------TLYKREYQKIGI-D-RSHLRDALKKTGDTYNELGKL 219 (393)
Q Consensus 148 ~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~------~~~~~~~~~lg~-d-~s~L~~al~~lg~~~~~i~~~ 219 (393)
...++|++|+.-..|+..|+.+|+.|.+.+..+++.+. ++|++....||. + .+.|+++|+++|++.+++..+
T Consensus 16 k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~ 95 (234)
T cd07664 16 KMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQL 95 (234)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999998887653 245556666777 3 346999999999999999999
Q ss_pred HhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH-----------HHhhhhcccc------------HHHH
Q psy17920 220 FEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-----------EKMTTENKME------------ANRL 276 (393)
Q Consensus 220 ~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-----------erl~~e~k~~------------~~~v 276 (393)
+.+|+..|+..|.++|++|.++++|++.+|..|..++..|..+ .|+...|+.+ +..+
T Consensus 96 ~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~ 175 (234)
T cd07664 96 HQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKV 175 (234)
T ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988765544433 2332234321 2567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 277 QEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 277 e~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
++++.+++.|+..++.|+.||+.+|+.||+.++..|+++||+++++++..|....+++
T Consensus 176 ~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~p~~ 233 (234)
T cd07664 176 QQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEA 233 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7778899999999999999999999999999999999999999999999999998764
No 15
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.88 E-value=6.6e-21 Score=175.63 Aligned_cols=180 Identities=9% Similarity=0.107 Sum_probs=150.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHHHHHHHHhcCc
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------DRSHLRDALKKTGDTYNELGKLFEEQP 224 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d~s~L~~al~~lg~~~~~i~~~~~~Q~ 224 (393)
.+++|...+.|+..|+.+|..+.++..++++++ .++..+|.++|. .++.|..+|+.+|++.+.++....+++
T Consensus 12 ~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~-~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l~ 90 (200)
T cd07624 12 RSPEFDKMNEYLTLFGEKLGTIERISQRIHKER-IEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEVLL 90 (200)
T ss_pred CCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999998864 556666666666 344699999999999999999999999
Q ss_pred cccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 225 KLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKM-EANRLQEVLKRTDTVSYALLGEINHFHQEQVS 303 (393)
Q Consensus 225 ~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~-~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~ 303 (393)
+.+...|.++|++|.+++++++.++..|......+..+......-+. -+.++++++.++++++..+++|++||+.+|..
T Consensus 91 ~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K~~ 170 (200)
T cd07624 91 SDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLELLKEVEKLQDKLECANADLKADLERWKQNKRQ 170 (200)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888999999999999999999999887654433332110000000 34789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 304 QINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 304 Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
|||.+|.+|++.||+||++++..|....+
T Consensus 171 d~k~~l~~~a~~qi~~~~~~~~~We~~~p 199 (200)
T cd07624 171 DLKKILLDMAEKQIQYYEQCLAAWEEVLP 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999998753
No 16
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.87 E-value=4.2e-23 Score=175.91 Aligned_cols=104 Identities=43% Similarity=0.733 Sum_probs=90.7
Q ss_pred eEEEeeCCccccccccccccchhhhhcc-----cc-ceEecCCCCcccccC--------------CccccccCCChHHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKS-----LV-AVVADQTKKCQTLYK--------------REYQKIGRYEEQFIE 82 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~-----~~-~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie 82 (393)
++|+|+||+|.++ ..|++.|+.+ .+ ..|.|||+||.||++ |+|.+.|+++++||+
T Consensus 1 ~~~~v~~p~~~~~-----~~g~~~y~~Y~I~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~fie 75 (125)
T cd06862 1 YHCTVTNPKKESK-----FKGLKSFIAYQITPTHTNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVTGRFEEDFIE 75 (125)
T ss_pred CEEEEcCccccCC-----CCCCcCEEEEEEEEecCcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccccCCCHHHHH
Confidence 5799999999974 1134444432 13 479999999999999 899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccccchhhHhhhhhhhhcccc
Q psy17920 83 HRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNL 131 (393)
Q Consensus 83 ~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~e~~wk~~~~~ae~~~~ 131 (393)
+||++|+.||++|+.||.|+.|+.|+.||+.+++++|+.+.+++|.+++
T Consensus 76 ~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~~~~~~~~~~~~~~~~~~ 124 (125)
T cd06862 76 KRRERLELWMNRLARHPVLSQSEVFRHFLTCTDEKDWKSGKRKAEKDEL 124 (125)
T ss_pred HHHHHHHHHHHHHhcCHhhhcChHHHHHcCCccHHHHHHhhHHHhcccC
Confidence 9999999999999999999999999999999999999999999988775
No 17
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=99.85 E-value=3.3e-19 Score=166.29 Aligned_cols=180 Identities=18% Similarity=0.209 Sum_probs=150.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhccc--hhHHHHHHHHHHHHHHHHHHHHhc
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREY-------QKIGID--RSHLRDALKKTGDTYNELGKLFEE 222 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~-------~~lg~d--~s~L~~al~~lg~~~~~i~~~~~~ 222 (393)
+|++|..-+.|+..|+.+|+.+.+.+..+++++ .+++..+ ..||.. .+.|+.+|..+|++.++++.++..
T Consensus 2 ~D~~F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r-~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~ 80 (216)
T cd07627 2 PDEWFIEKKQYLDSLESQLKQLYKSLELVSSQR-KELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLER 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999988765 3344444 445542 356999999999999999999999
Q ss_pred CccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH-----------HHhhhhcc-----c---------cHHHHH
Q psy17920 223 QPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-----------EKMTTENK-----M---------EANRLQ 277 (393)
Q Consensus 223 Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-----------erl~~e~k-----~---------~~~~ve 277 (393)
++..|...|.++|++|.++++|++++|..|..++..+..+ +|+...|+ + .+..++
T Consensus 81 ~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~ 160 (216)
T cd07627 81 QALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRAS 160 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988765444432 34432232 1 125677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 278 EVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 278 ~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
.++.+++.|+..++.|+.+|+.+|+.||+.+|..|+++||+++++++..|....+
T Consensus 161 ~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~~ 215 (216)
T cd07627 161 ELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETFYQ 215 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7788999999999999999999999999999999999999999999999998754
No 18
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=99.84 E-value=9.4e-22 Score=165.53 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=72.2
Q ss_pred eEEEeeCCccccccccccccchhhhhc-------c---cc---ceEecCCCCcccccC--------------Cccccc--
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK-------S---LV---AVVADQTKKCQTLYK--------------REYQKI-- 73 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~-------~---~~---~~v~rry~df~~l~~--------------P~K~~~-- 73 (393)
+.|+|+||++++++ ++.|++ + ++ ..|.|||+||.||++ |+|.+.
T Consensus 1 ~~i~V~dP~~~~~~-------~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~ 73 (116)
T cd07284 1 IFITVDEPESHVTA-------IETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKG 73 (116)
T ss_pred CEEEEeCcceeecC-------CcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhh
Confidence 47999999999984 444443 2 22 279999999999999 788754
Q ss_pred --cCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 74 --GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 74 --g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
|+|+++||++||++|+.||++|+.||+|+.|++|+.|||+
T Consensus 74 ~~~~~~~~fie~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~~ 115 (116)
T cd07284 74 MVERFNEDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTA 115 (116)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhcC
Confidence 5799999999999999999999999999999999999986
No 19
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.84 E-value=4.1e-19 Score=161.67 Aligned_cols=174 Identities=14% Similarity=0.172 Sum_probs=151.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chhH-HHHHHHHHHHHHHHHHHHHhcC
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------DRSH-LRDALKKTGDTYNELGKLFEEQ 223 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d~s~-L~~al~~lg~~~~~i~~~~~~Q 223 (393)
.+++|..++.|++.|+.+|.++.++.++++++. .++..+|.++|. .++. |..+|+.+|...+.++....++
T Consensus 2 ~d~~F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~-~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l 80 (185)
T cd07628 2 PDKEFLEIREKSDKLDENLTKIDKIFAKVVKRQ-SDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVL 80 (185)
T ss_pred CchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999998864 567777777776 2344 9999999999999999988888
Q ss_pred ccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 224 PKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVS 303 (393)
Q Consensus 224 ~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~ 303 (393)
+......|.++|++|..++++++.++..|......+..+.... -..+++.++.+++.++..+++|++||+.+|..
T Consensus 81 ~~~~~~~f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~e~l~e~l-----l~~~ve~a~~~~e~f~~~~~~E~~rF~~~k~~ 155 (185)
T cd07628 81 NKYTDENYLTSLKDLLHYILSLKNLIKLRDQKQLDYEELSDYL-----LTDEVENAKETSDAFNKEVLKEYPNFERIKKQ 155 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877789999999999999999999998887655444433222 34789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy17920 304 QINAAMKSFLTEQINFYQKDILNKKREY 331 (393)
Q Consensus 304 Dfk~~l~~yl~~qi~~~qk~a~~~~~~~ 331 (393)
||+.+|.+|++.||+||++++..|.+..
T Consensus 156 elk~~l~~~a~~qi~~y~~~~~~W~~~~ 183 (185)
T cd07628 156 EIKDSLGALADGHIDFYQGLVEDWEKVE 183 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999875
No 20
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.83 E-value=2.8e-21 Score=166.00 Aligned_cols=93 Identities=23% Similarity=0.358 Sum_probs=76.3
Q ss_pred CceEEEeeCCccccccccccccchhhhh-cccc------ceEecCCCCcccccC-------------Ccccc--------
Q psy17920 21 HILSISHFNLEQETESCSRFIHGLDSAV-KSLV------AVVADQTKKCQTLYK-------------REYQK-------- 72 (393)
Q Consensus 21 ~~~~i~v~~p~k~~~~~s~f~~~~~~~~-~~~~------~~v~rry~df~~l~~-------------P~K~~-------- 72 (393)
..++|+|+||+|+|++.+.|+. ++..+ +..| ..|.|||+||.||++ |+|++
T Consensus 2 ~~~~i~v~dP~~~~~g~~~yt~-Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~g~~iPpLP~K~~~~~~~~~~ 80 (132)
T cd07294 2 NFLEIDIFNPQTVGVGRNRFTT-YEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRG 80 (132)
T ss_pred ceEEEEeeCCeEecCCCCCEEE-EEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHcCCCccCCCCCCceeccccccc
Confidence 4689999999999996554431 11111 1233 369999999999999 78986
Q ss_pred -ccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 73 -IGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 73 -~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
.|+|+++|||+||++|+.||++|+.||+|+.|+.|+.||+.+
T Consensus 81 ~~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~ 123 (132)
T cd07294 81 DEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDE 123 (132)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCC
Confidence 258999999999999999999999999999999999999975
No 21
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.83 E-value=2.5e-21 Score=164.64 Aligned_cols=91 Identities=23% Similarity=0.336 Sum_probs=74.6
Q ss_pred eEEEeeCCccccccccccccchhhhhc-ccc------ceEecCCCCcccccC-------------Cccccc---------
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK-SLV------AVVADQTKKCQTLYK-------------REYQKI--------- 73 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~~------~~v~rry~df~~l~~-------------P~K~~~--------- 73 (393)
++|+|+||++++++.+.|+. +...+. +.| ..|.|||+||.||++ |+|...
T Consensus 2 ~~i~v~dP~~~~~~~~~y~~-Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~iPpLP~K~~~~~~~~~~~~ 80 (123)
T cd07293 2 LEIDVTNPQTVGVGRGRFTT-YEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKALFRQLPFRGDD 80 (123)
T ss_pred eEEEecCCeEecCCCcCEEE-EEEEEEeCCCccccCceEEECCchHHHHHHHHHHhccCCccCCCCCCchhhhccccccc
Confidence 78999999999996544321 111111 233 269999999999999 789874
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 74 g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
|+|+++|||+||++|+.||++|++||+|+.|++|+.||+.+
T Consensus 81 ~~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~~ 121 (123)
T cd07293 81 GIFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQDE 121 (123)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCCC
Confidence 58999999999999999999999999999999999999863
No 22
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=99.83 E-value=3e-21 Score=162.52 Aligned_cols=84 Identities=20% Similarity=0.366 Sum_probs=71.6
Q ss_pred eEEEeeCCccccccccccccchhhhhc-------ccc------ceEecCCCCcccccC--------------Cccccc--
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK-------SLV------AVVADQTKKCQTLYK--------------REYQKI-- 73 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~-------~~~------~~v~rry~df~~l~~--------------P~K~~~-- 73 (393)
+.|+|+||.+++++ ++.|+. ..| ..|.|||+||+||++ |+|.+.
T Consensus 1 ~~i~V~dP~~~~~~-------~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~ 73 (116)
T cd07283 1 LFVTVDDPKKHVCT-------METYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKG 73 (116)
T ss_pred CEEEEcCcceecCC-------CcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccc
Confidence 46999999999884 333333 222 379999999999999 788653
Q ss_pred --cCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 74 --GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 74 --g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
++|+++|||+||++|+.||++|+.||+|+.+++|+.|||+
T Consensus 74 ~~~~~~~~fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt~ 115 (116)
T cd07283 74 VVDRFSEEFVETRRKALDKFLKRIADHPVLSFNEHFNVFLTA 115 (116)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 4899999999999999999999999999999999999986
No 23
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=99.82 E-value=3.1e-18 Score=156.63 Aligned_cols=75 Identities=45% Similarity=0.744 Sum_probs=72.3
Q ss_pred HhHHHHHhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy17920 319 FYQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKST 393 (393)
Q Consensus 319 ~~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~~ 393 (393)
.-|+.+.+++++|+++.++|||+++++++|++|||+||||++|||+|||.+|+.|||++|+.||++||.|||+|+
T Consensus 115 ~~~k~al~K~kE~~r~~~egk~~~~e~~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~m~~yLe~qI~fyqqI~ 189 (199)
T cd07626 115 GVHKGAVQKVKECERLVDEGKMSSAELEEVKRRTDVISYALLAEINHFHRERVRDFKSMMRNYLQQQIEFYQKIA 189 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999999999999999999999999999874
No 24
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=99.82 E-value=4.3e-18 Score=157.47 Aligned_cols=184 Identities=16% Similarity=0.168 Sum_probs=156.4
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHh
Q psy17920 149 HFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQT------LYKREYQKIGI-DRSHLRDALKKTGDTYNELGKLFE 221 (393)
Q Consensus 149 ~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~------~~~~~~~~lg~-d~s~L~~al~~lg~~~~~i~~~~~ 221 (393)
..++|++|+.-+.|+..++.+|+.+...+..+++.|.. .|++....||. +.+.|+++|+.+|+.++.+..++.
T Consensus 19 ~~d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~t~L~~~ls~lae~~ek~~~l~~ 98 (219)
T cd07621 19 QKDVDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEPTPLDKFLLKVAETFEKLRKLEG 98 (219)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 36778999999999999999999999999988776532 34445555555 345699999999999999999999
Q ss_pred cCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhh----h-hccc--cHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 222 EQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMT----T-ENKM--EANRLQEVLKRTDTVSYALLGEI 294 (393)
Q Consensus 222 ~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~----~-e~k~--~~~~ve~~~~~~e~is~~v~~E~ 294 (393)
.|+..|...|+++|++|.+++++++++|..|..++..|..+++.. . ..++ .+.++++++.+||.||..++.|+
T Consensus 99 r~A~~d~l~L~e~L~~Y~r~~~A~K~~l~rR~ral~~~q~A~k~L~KaR~k~~~v~~AE~~~~~a~~~Fe~iS~~~k~El 178 (219)
T cd07621 99 RVASDEDLKLSDTLRYYMRDTQAAKDLLYRRLRCLANYENANKNLEKARAKNKDVHAAEAAQQEACEKFESMSESAKQEL 178 (219)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888775321 1 1112 23677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 295 NHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 295 ~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
.||+.+|+.||+..|..|++.||.+.+..+..+....-
T Consensus 179 ~rF~~~Rv~~fk~~lve~aE~~ik~Ak~~~~~l~~~~~ 216 (219)
T cd07621 179 LDFKTRRVAAFRKNLVELAELEIKHAKAQIQLLKNCLA 216 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988876553
No 25
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=99.82 E-value=3.9e-18 Score=157.16 Aligned_cols=184 Identities=15% Similarity=0.164 Sum_probs=157.3
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------c-hhHHHHHHHHHHHHHHHHHHHH
Q psy17920 149 HFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------D-RSHLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 149 ~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d-~s~L~~al~~lg~~~~~i~~~~ 220 (393)
..++|++|+.-..|+..++.+|+.+...+..+++.+. .++.+|..+|. + ++.|+++|+.+|+.++.+..++
T Consensus 18 ~ke~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rk-ela~~~~~~s~al~~l~~ee~t~L~kals~lae~~Ek~~~l~ 96 (218)
T cd07663 18 VKEVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHK-NVADDYIHISAALNSVAAEEPTVIKKYLLKVAELFEKLRKVE 96 (218)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999987653 35556655444 2 3469999999999999999999
Q ss_pred hcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHh----hhhcc-c--cHHHHHHHHHHHHHHHHHHHHH
Q psy17920 221 EEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKM----TTENK-M--EANRLQEVLKRTDTVSYALLGE 293 (393)
Q Consensus 221 ~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl----~~e~k-~--~~~~ve~~~~~~e~is~~v~~E 293 (393)
..|+..|...|+|+|++|.+++++++++|..|..++..|..+++. ...++ + .+.++.+++.+|+.||..++.|
T Consensus 97 ~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR~k~kev~~aE~~~~ea~~~Fe~IS~~~k~E 176 (218)
T cd07663 97 DRVASDQDLKLTELLRYYMLNIEAAKDLLYRRARALADYENSNKALDKARLKSKDVKQAEAHQQECCQKFEKLSESAKQE 176 (218)
T ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888876432 11111 1 2366778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHh
Q psy17920 294 INHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 294 ~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~ 333 (393)
+.||+..|+.||+..|..|++++|.+.+..+..|......
T Consensus 177 l~rF~~~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~~~~~~ 216 (218)
T cd07663 177 LISFKRRRVAAFRKNLIEMTELEIKHAKNNVSLLQSCIDL 216 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988876543
No 26
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.82 E-value=3.2e-18 Score=156.96 Aligned_cols=181 Identities=15% Similarity=0.103 Sum_probs=153.2
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhccc--hh--HHHHHHHHHHHHHHHHHHHH
Q psy17920 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQT------LYKREYQKIGID--RS--HLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 151 ~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~------~~~~~~~~lg~d--~s--~L~~al~~lg~~~~~i~~~~ 220 (393)
++|++|+.-+.|+..|+.+|+.+...+..+++.+.. .|+.....||.. .+ .|+++|+.+|+..+.+..++
T Consensus 1 d~D~~F~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~ 80 (198)
T cd07630 1 DVDEFFQKERDMNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENI 80 (198)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999888876532 344445555552 23 69999999999999999999
Q ss_pred hcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhh---hcccc--HHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 221 EEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTT---ENKME--ANRLQEVLKRTDTVSYALLGEIN 295 (393)
Q Consensus 221 ~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~---e~k~~--~~~ve~~~~~~e~is~~v~~E~~ 295 (393)
..|+.+|...|.++|++|.+++++++++|..|..++..|..+++... +.|.+ +...++++.+|+.||..++.|+.
T Consensus 81 ~~~a~~d~~~Lg~~L~~Y~r~i~a~K~~l~~R~~~~~~~~~a~k~l~Kar~~k~~~ae~~~~~a~~~fe~iS~~~k~EL~ 160 (198)
T cd07630 81 EVVAGNNENTLGLTLDLYSRYSESEKDMLFRRTCKLIEFENASKALEKAKPQKKEQAEEAKKKAETEFEEISSLAKKELE 160 (198)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888776643311 12222 36677789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy17920 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREY 331 (393)
Q Consensus 296 rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~ 331 (393)
||+.+|+.||+..|..|+++||+..+..+..|.+.+
T Consensus 161 rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~~~~ 196 (198)
T cd07630 161 RFHRQRVLELQSALVCYAESQIKNAKEAAAVLTKTL 196 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999988765
No 27
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=99.82 E-value=2.1e-18 Score=162.36 Aligned_cols=183 Identities=19% Similarity=0.304 Sum_probs=151.2
Q ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------c--hhHHHHHHHHHHHHHHHHHHH
Q psy17920 149 HFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------D--RSHLRDALKKTGDTYNELGKL 219 (393)
Q Consensus 149 ~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d--~s~L~~al~~lg~~~~~i~~~ 219 (393)
..+.|++|.....|+..|+.+|+.|.+...++++.+ .+++..+.++|. . ...|++++..+|++++.++..
T Consensus 19 ~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~-~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~ 97 (236)
T PF09325_consen 19 MKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRR-QELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISEL 97 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999988764 345555555555 2 235999999999999999999
Q ss_pred HhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHH-----------HHHhhhhcccc--------------HH
Q psy17920 220 FEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKRE-----------YEKMTTENKME--------------AN 274 (393)
Q Consensus 220 ~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re-----------~erl~~e~k~~--------------~~ 274 (393)
+..++..+...|.++|++|.++++++++++..|..++..+.. .+++...++.. +.
T Consensus 98 ~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~ 177 (236)
T PF09325_consen 98 LEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAER 177 (236)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765333222 22332221111 25
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 275 RLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 275 ~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
.++.++.+++.|+..++.|++||+.+|+.||+.+|..|++.||++|++++..|....+
T Consensus 178 ~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~ 235 (236)
T PF09325_consen 178 RVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLP 235 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 5677788999999999999999999999999999999999999999999999998764
No 28
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=99.82 E-value=3.4e-18 Score=157.33 Aligned_cols=178 Identities=15% Similarity=0.191 Sum_probs=147.7
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHHHHHHHHhcC
Q psy17920 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------DRSHLRDALKKTGDTYNELGKLFEEQ 223 (393)
Q Consensus 151 ~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d~s~L~~al~~lg~~~~~i~~~~~~Q 223 (393)
..+++|..++.|+..|+.+|.++.++.++++++ ..++..+|.++|. .+++|..+|+.+|++++.++....+.
T Consensus 11 ~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r-~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~ 89 (201)
T cd07622 11 NPDKRFEDLKNYSDELQTNLNNLLKVRARLAER-LYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNG 89 (201)
T ss_pred CCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778889999999999999999999999876 5668888888887 24569999999999999998887777
Q ss_pred ccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHH----HHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 224 PKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKRE----YEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQ 299 (393)
Q Consensus 224 ~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re----~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ 299 (393)
...+ ..|.++|++|..++++++.++..|...--.+.. +.+...+ -+.+++.++.+.+.+++.+++|++||+.
T Consensus 90 ~~~~-~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~---l~~~ve~a~~~~e~f~~~~~~E~~rF~~ 165 (201)
T cd07622 90 LEDE-ELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ---GEEAVKEAKDELNEFVKKALEDVERFKK 165 (201)
T ss_pred HHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 789999999999999999999866542111111 1111111 3489999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHh
Q psy17920 300 EQVSQINAAMKSFLTEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 300 ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~ 333 (393)
+|..||+.+|.+|+..||+||++++..|.+.-+-
T Consensus 166 ~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~~~~~ 199 (201)
T cd07622 166 QKVRDLKEILISYAKLQIKLAKKGLQTWTNIKEC 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999987543
No 29
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.81 E-value=8.3e-21 Score=159.19 Aligned_cols=91 Identities=21% Similarity=0.411 Sum_probs=75.2
Q ss_pred eEEEeeCCccccccccccccchhhhhc-cc------cceEecCCCCcccccC--------------CccccccCCChHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK-SL------VAVVADQTKKCQTLYK--------------REYQKIGRYEEQFI 81 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~------~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fi 81 (393)
|+|+|+||+++|+..+.|+. +...+. .. ...|.|||+||.||++ |+|.+.|+|+++||
T Consensus 1 ~~i~V~dp~~~~~~~~~y~~-Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~~~~~~~fi 79 (112)
T cd06861 1 FEITVGDPHKVGDLTSAHTV-YTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSVGRFDDNFV 79 (112)
T ss_pred CEEEEcCcceecCCccCeEE-EEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccccCCCHHHH
Confidence 68999999999985443321 111111 11 2369999999999999 89999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 82 EHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 82 e~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
|+||++|+.||++|+.||+|+.|+.|+.||+++
T Consensus 80 e~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06861 80 EQRRAALEKMLRKIANHPVLQKDPDFRLFLESE 112 (112)
T ss_pred HHHHHHHHHHHHHHHCCcccccCcHHHHhcCCC
Confidence 999999999999999999999999999999863
No 30
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.81 E-value=9.2e-21 Score=161.32 Aligned_cols=91 Identities=23% Similarity=0.359 Sum_probs=74.9
Q ss_pred eEEEeeCCccccccccccccchhhhhc-ccc------ceEecCCCCcccccC-------------Cccccc---------
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK-SLV------AVVADQTKKCQTLYK-------------REYQKI--------- 73 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~~------~~v~rry~df~~l~~-------------P~K~~~--------- 73 (393)
++|+|+||++++++.+.|+. +..-+. ..| ..|.|||+||.|||+ |+|++.
T Consensus 2 ~~i~V~dP~~~~~~~~~y~~-Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~iPpLP~K~~~~~~~~~~~~ 80 (123)
T cd06894 2 LEIDVVNPQTHGVGKKRFTD-YEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERDSKIVVPPLPGKALKRQLPFRGDD 80 (123)
T ss_pred eEEEEeCCcEecCCCcCEEE-EEEEEecCCcccccCccEEEecCHHHHHHHHHHHHcCCCccCCCCCCceeccccccccc
Confidence 78999999999996544331 111111 122 379999999999999 899874
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 74 g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
|+|+++|||+||++|+.||++|+.||+|+.|+.|+.||+.+
T Consensus 81 ~~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~ 121 (123)
T cd06894 81 GIFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEE 121 (123)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCC
Confidence 79999999999999999999999999999999999999864
No 31
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.80 E-value=1.6e-20 Score=158.46 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=74.8
Q ss_pred EEEeeCCccccccccccccchhhhhccc-----cceEecCCCCcccccC-------------------CccccccCCChH
Q psy17920 24 SISHFNLEQETESCSRFIHGLDSAVKSL-----VAVVADQTKKCQTLYK-------------------REYQKIGRYEEQ 79 (393)
Q Consensus 24 ~i~v~~p~k~~~~~s~f~~~~~~~~~~~-----~~~v~rry~df~~l~~-------------------P~K~~~g~~~~~ 79 (393)
.++|+||+|++++|..+......-.... +.+|.||||||.|||+ |+|++.|+|+++
T Consensus 4 ~~~V~dp~~~~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~g~f~~~ 83 (118)
T cd07288 4 FYSVTDPRTHPKGYTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVFGRFEAA 83 (118)
T ss_pred EEEecCCcCcCCCcEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceeeccCCHH
Confidence 5899999999998765432211111111 3479999999999987 889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 80 FIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 80 Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
|||+||++|++||++|++||+|..|++|+.||+.
T Consensus 84 fIeeRR~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 117 (118)
T cd07288 84 VIEERRNAAEAMLLFTVNIPALYNSPQLKEFFRD 117 (118)
T ss_pred HHHHHHHHHHHHHHHHhCChhhcCChHHHHHHhc
Confidence 9999999999999999999999999999999974
No 32
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.80 E-value=2.2e-20 Score=160.84 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=76.7
Q ss_pred cCCCceEEEeeCCccccccccccccchhhhhcccc---c-eEecCCCCcccccC--------------Cccccc-cCCCh
Q psy17920 18 VMDHILSISHFNLEQETESCSRFIHGLDSAVKSLV---A-VVADQTKKCQTLYK--------------REYQKI-GRYEE 78 (393)
Q Consensus 18 ~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~---~-~v~rry~df~~l~~--------------P~K~~~-g~~~~ 78 (393)
.....+.|+|+||+|.|+++--+.....+-...|. . +|+|||+||+||++ |+|.+. |++++
T Consensus 25 ~~~~~l~i~Vtd~ek~G~~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~k~~~~~~~~~ 104 (140)
T cd06891 25 KPKYFLRVRVTGIERNKSKDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLPSTSYGSNNE 104 (140)
T ss_pred CCCceEEEEEeCceecCCCCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCCccccCCCCCH
Confidence 44567999999999999843221111111111221 2 69999999999999 999976 89999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 79 QFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 79 ~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+|+++||.+||+||+|||.||+|..|++|+.||++
T Consensus 105 E~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLEs 139 (140)
T cd06891 105 EDARKLKANLQRWFNRVCSDPILIRDEELRFFIES 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhcc
Confidence 99999999999999999999999999999999986
No 33
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.80 E-value=2.1e-20 Score=157.75 Aligned_cols=91 Identities=21% Similarity=0.336 Sum_probs=73.0
Q ss_pred eEEEeeCCcccccccccccc-chhhhh--cccc---ceEecCCCCcccccC--------------Cccccc----cCCCh
Q psy17920 23 LSISHFNLEQETESCSRFIH-GLDSAV--KSLV---AVVADQTKKCQTLYK--------------REYQKI----GRYEE 78 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~-~~~~~~--~~~~---~~v~rry~df~~l~~--------------P~K~~~----g~~~~ 78 (393)
++|+|+||+|++++.+.|+. .+.+-+ ..++ ..|.|||+||.||++ |+|... |+|++
T Consensus 1 ~~v~V~dP~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~ 80 (116)
T cd06860 1 LFITVDNPEKHVTTLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSP 80 (116)
T ss_pred CEEEEcCCeeccCCCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCH
Confidence 47999999999985443321 111111 1122 269999999999999 788873 58999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 79 QFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 79 ~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+|||+||++||.||++|+.||+|+.|+.|+.||++
T Consensus 81 ~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt~ 115 (116)
T cd06860 81 EFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 99999999999999999999999999999999985
No 34
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.79 E-value=2.4e-20 Score=157.20 Aligned_cols=91 Identities=20% Similarity=0.288 Sum_probs=75.4
Q ss_pred eEEEeeCCccccccccccccchhhhhc----ccc---ceEecCCCCcccccC--------------CccccccCCChHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK----SLV---AVVADQTKKCQTLYK--------------REYQKIGRYEEQFI 81 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~----~~~---~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fi 81 (393)
++|+|+||+|++++.+.|+. +..-+. .|+ ..|.|||+||.|||+ |+|.+.|+|+++||
T Consensus 2 ~~i~V~dP~~~~~g~~~y~~-Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~~~~~~~~i 80 (116)
T cd07295 2 LEIEVRNPKTHGIGRGMFTD-YEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFTNRFSDEVI 80 (116)
T ss_pred eEEEEeCCcEecCCCCCEEE-EEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccccCCCHHHH
Confidence 78999999999996544431 111111 232 369999999999999 78999899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcc-cccccccccccc
Q psy17920 82 EHRKNQLQSFVDYVCRHPVLC-RSPVWQHFITCT 114 (393)
Q Consensus 82 e~Rr~~L~~fl~rv~~HPvL~-~~~~~~~FL~~~ 114 (393)
|+||++|+.||++|+.||+|+ .++.+..||+.+
T Consensus 81 e~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~ 114 (116)
T cd07295 81 EERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDP 114 (116)
T ss_pred HHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCC
Confidence 999999999999999999998 689999999976
No 35
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.79 E-value=2.8e-20 Score=158.57 Aligned_cols=91 Identities=16% Similarity=0.331 Sum_probs=71.8
Q ss_pred eEEEeeCCccccccccccc-cchhhh--hcccc---ceEecCCCCcccccC----------------CccccccC-----
Q psy17920 23 LSISHFNLEQETESCSRFI-HGLDSA--VKSLV---AVVADQTKKCQTLYK----------------REYQKIGR----- 75 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~-~~~~~~--~~~~~---~~v~rry~df~~l~~----------------P~K~~~g~----- 75 (393)
++|+|+||++++++.+.|+ +.+.+- ...++ ..|.|||+||.|||+ |+|.+.|.
T Consensus 1 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~ 80 (124)
T cd07282 1 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKV 80 (124)
T ss_pred CEEEEeCCeEecCCccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCcccccccccc
Confidence 5899999999998433221 111110 00122 379999999999998 78998663
Q ss_pred -----CChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 76 -----YEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 76 -----~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
|+++|||+||.+||.||++|+.||+|+.|++|+.||++
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 81 GKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES 123 (124)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence 68999999999999999999999999999999999985
No 36
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=99.79 E-value=4.8e-17 Score=149.10 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=155.0
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHhc
Q psy17920 150 FNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQT------LYKREYQKIGID-RSHLRDALKKTGDTYNELGKLFEE 222 (393)
Q Consensus 150 ~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~------~~~~~~~~lg~d-~s~L~~al~~lg~~~~~i~~~~~~ 222 (393)
.++|.||+.=..|+..++..|+.+...+..+++.+.. .+++.+..||.. ++.|+++|+++++.++++..++..
T Consensus 19 kd~D~wFe~ek~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~e~t~L~~~l~~laev~eki~~l~~~ 98 (218)
T cd07662 19 KDVDDFFEHERTFLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQDSTDICKFFLKVSELFDKTRKIEAR 98 (218)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999988888765532 233444455553 456999999999999999999999
Q ss_pred CccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHh----hhhccc---cHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 223 QPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKM----TTENKM---EANRLQEVLKRTDTVSYALLGEIN 295 (393)
Q Consensus 223 Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl----~~e~k~---~~~~ve~~~~~~e~is~~v~~E~~ 295 (393)
|+..|...|+|+|.+|.+++++++++|..|..++..|..+++. ...||- .+..+.+++.+|+.||..++.|+.
T Consensus 99 ~A~~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~~kev~~aE~~~~~a~~~Fe~IS~~aK~El~ 178 (218)
T cd07662 99 VAADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETTQQLCCQKFEKISESAKQELI 178 (218)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888876532 223432 246788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 296 rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
||+..|+.+||..|..|++.+|++.+..+.-|..-..
T Consensus 179 rF~~~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~~~~ 215 (218)
T cd07662 179 DFKTRRVAAFRKNLVELAELELKHAKGNLQLLQSCLA 215 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888876543
No 37
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.78 E-value=2.2e-17 Score=152.77 Aligned_cols=179 Identities=25% Similarity=0.304 Sum_probs=150.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------c-hh---HHHHHHHHHHHHHHHHHHHH
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------D-RS---HLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d-~s---~L~~al~~lg~~~~~i~~~~ 220 (393)
.|++|..+..|++.|+.+++.|.+...++++++ .+++.+|.+||. . .. .|+.++..+|++++.++...
T Consensus 2 ~d~~f~~~~~~v~~le~~l~~l~~~~~~~~k~~-~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (218)
T cd07596 2 EDQEFEEAKDYILKLEEQLKKLSKQAQRLVKRR-RELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLS 80 (218)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999998765 446666766666 1 22 49999999999999999999
Q ss_pred hcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH-----------HHhhhh-----cccc---------HHH
Q psy17920 221 EEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-----------EKMTTE-----NKME---------ANR 275 (393)
Q Consensus 221 ~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-----------erl~~e-----~k~~---------~~~ 275 (393)
..++..+...|.++|++|.+++.++++++..|...+..+..+ +++... .++. +.+
T Consensus 81 ~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~ 160 (218)
T cd07596 81 EAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESA 160 (218)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988765444433 222211 1221 256
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy17920 276 LQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREY 331 (393)
Q Consensus 276 ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~ 331 (393)
++.++.+++.|+..++.|+.||+.+|+.||+.+|..|++.||+|+++++..|....
T Consensus 161 ~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~ 216 (218)
T cd07596 161 LEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLL 216 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 77788899999999999999999999999999999999999999999999999864
No 38
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.75 E-value=5.7e-16 Score=143.37 Aligned_cols=177 Identities=15% Similarity=0.205 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHhcCccccccch
Q psy17920 159 CSRFIHGLDSAVKSLVAVVADQTKKC------QTLYKREYQKIGI-DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPL 231 (393)
Q Consensus 159 f~~~l~~L~~~l~~L~~~~~~l~kk~------~~~~~~~~~~lg~-d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l 231 (393)
+..++..++.++..|+.....+++++ .+.|++....||. ++++|+.+|+.+++++..+.+.++.|++.+...|
T Consensus 9 i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v 88 (211)
T cd07598 9 IQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFAECLAALQDYRQAEVERLEAKV 88 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666555543 3456777777777 4567999999999999999999999999999999
Q ss_pred hHHHHHHHhHHhhhhhHHHH----HHHHHHHHHHHHHhhhhccc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 232 GDVLHIYKGIITSMPDILGL----HKDILNKKREYEKMTTENKM-------EANRLQEVLKRTDTVSYALLGEINHFHQE 300 (393)
Q Consensus 232 ~e~L~ey~~ll~s~~~v~~~----~~~al~k~re~erl~~e~k~-------~~~~ve~~~~~~e~is~~v~~E~~rF~~e 300 (393)
.++|++|.+++.++++.+.. +...+.+....+|+...+.. .+.++..++.+++.++..+..||++|+.+
T Consensus 89 ~epLk~Y~~l~k~~k~~~K~~~~ar~~~~~~~~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~ 168 (211)
T cd07598 89 VQPLALYGTICKHARDDLKNTFTARNKELKQLKQLEKLRQKNPSDRQIISQAESELQKASVDANRSTKELEEQMDNFEKQ 168 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864 33334445555665433322 23778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 301 QVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 301 k~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
|..|||.++.+|+..|+.||.+.+..|....+.+.
T Consensus 169 k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~ 203 (211)
T cd07598 169 KIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQ 203 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999987664
No 39
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.74 E-value=5.5e-19 Score=150.79 Aligned_cols=90 Identities=21% Similarity=0.375 Sum_probs=72.0
Q ss_pred eEEEeeCCccccccccccccchhhhhc-c---c---cceEecCCCCcccccC----------------Ccccccc-----
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK-S---L---VAVVADQTKKCQTLYK----------------REYQKIG----- 74 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~-~---~---~~~v~rry~df~~l~~----------------P~K~~~g----- 74 (393)
++|+|+||++++++.+.|+. +...+. . + ...|.|||+||+||++ |+|.+.|
T Consensus 1 ~~i~V~~p~~~~~~~~~y~~-Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~ 79 (124)
T cd07281 1 LKVSITDPEKIGDGMNAYVV-YKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVK 79 (124)
T ss_pred CEEEEcCCeEeeCCcCCeEE-EEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhh
Confidence 57999999999985444321 111111 1 1 2379999999999998 7887765
Q ss_pred -----CCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 75 -----RYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 75 -----~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+++++|||+||++|+.||++|+.||+|+.|++|+.||+.
T Consensus 80 ~~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07281 80 VGKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEK 123 (124)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 468999999999999999999999999999999999974
No 40
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.74 E-value=3.6e-16 Score=142.49 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=141.1
Q ss_pred hhHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-------ch--hHHHHHHHHHHHHHHHHHHHHh
Q psy17920 152 LEQETESCSRFIHGLDSAVK-SLVAVVADQTKKCQTLYKREYQKIGI-------DR--SHLRDALKKTGDTYNELGKLFE 221 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~-~L~~~~~~l~kk~~~~~~~~~~~lg~-------d~--s~L~~al~~lg~~~~~i~~~~~ 221 (393)
++.+|..++.+++.++..|. .|.++..++.++ ..++..+|.+||. .. .+|+.+|..+|++++..+....
T Consensus 2 ~d~~F~~~e~~~~~~~~~L~~~l~kv~~Ri~k~-~~~l~~dl~elG~~fn~ls~~E~~~~L~~~le~~g~a~D~~~~~~~ 80 (187)
T cd07629 2 PDDEFTDIEAETKKYEQLLHGGMEKVNRRITKR-LGDLAEDMADLGGRFNAFSLEEQKSELAEALEKVGQAVDSTYLATE 80 (187)
T ss_pred cchHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999995 799999998764 5678888888888 12 3599999999999999988777
Q ss_pred cCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17920 222 EQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTV-SYALLGEINHFHQE 300 (393)
Q Consensus 222 ~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~i-s~~v~~E~~rF~~e 300 (393)
.........|.|+|++|..++.+++.++.-|+.....+..+.... ..++.++..+.+.+ +..+++|+.||+++
T Consensus 81 ~l~~~l~~~f~EpL~E~~~y~~s~k~vlk~R~~K~~Q~e~l~~~L------~e~~~~~~~~~~~~~~~~~~~el~rF~~e 154 (187)
T cd07629 81 ALVGSLYYNINEPLSESAQFAGVVRELLKYRKLKHVQYEMTKDSL------LESALVAASDDLVISSTIKQKDLPRFQRE 154 (187)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666678999999999999999999987766443333332222 24444556666666 58899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 301 QVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 301 k~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
|..||+.+|++|+..|++|+.+++..|...
T Consensus 155 k~~dl~~~l~~~a~~~~~~a~~~~~~W~~~ 184 (187)
T cd07629 155 READLREILKNYSKYHKDWAKQNLEAWKEA 184 (187)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999875
No 41
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.73 E-value=1.2e-18 Score=147.05 Aligned_cols=89 Identities=16% Similarity=0.251 Sum_probs=72.1
Q ss_pred EEeeCCccccccccccccchhhhhcccc-----ceEecCCCCcccccC-------------------CccccccCCChHH
Q psy17920 25 ISHFNLEQETESCSRFIHGLDSAVKSLV-----AVVADQTKKCQTLYK-------------------REYQKIGRYEEQF 80 (393)
Q Consensus 25 i~v~~p~k~~~~~s~f~~~~~~~~~~~~-----~~v~rry~df~~l~~-------------------P~K~~~g~~~~~F 80 (393)
.+|+||++++++|..|.....+-....| .+|.||||||.|||+ |+|.+.|+||++|
T Consensus 5 ~~V~dp~~~~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~g~~d~~f 84 (118)
T cd07287 5 YTVTDPRRHPKGYTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVFGRFDESV 84 (118)
T ss_pred EEecCCeEcCCCeEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceeecCCCHHH
Confidence 5789999999876544222111111222 479999999999887 4588899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 81 IEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 81 ie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
||+||.+|+.||++|+.||.|..+++|+.||..
T Consensus 85 Ie~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 117 (118)
T cd07287 85 IEERRQCAEDLLQFSANIPALYNSSQLEDFFKG 117 (118)
T ss_pred HHHHHHHHHHHHHHHhcCccccCChHHHHHhcC
Confidence 999999999999999999999999999999974
No 42
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.73 E-value=1.6e-18 Score=145.57 Aligned_cols=89 Identities=20% Similarity=0.335 Sum_probs=72.8
Q ss_pred EEEeeCCccccc-cccccccchhhhhc----ccc---ceEecCCCCcccccC--------------CccccccCCC-hHH
Q psy17920 24 SISHFNLEQETE-SCSRFIHGLDSAVK----SLV---AVVADQTKKCQTLYK--------------REYQKIGRYE-EQF 80 (393)
Q Consensus 24 ~i~v~~p~k~~~-~~s~f~~~~~~~~~----~~~---~~v~rry~df~~l~~--------------P~K~~~g~~~-~~F 80 (393)
+|+|+||+++++ +.+.|+. +...+. .++ ..|.|||+||.||++ |+|.+.|+++ ++|
T Consensus 1 ~v~V~dP~~~~~~~~~~y~~-Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~f 79 (113)
T cd06898 1 SVEVRDPRTHKEDDWGSYTD-YEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLFGRFNNEGF 79 (113)
T ss_pred CeEEeCCcEecCCCCCCeEE-EEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCCHHH
Confidence 489999999987 4444331 111111 222 269999999999998 8999999998 999
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 81 IEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 81 ie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
|++||++|+.||++|+.||+|..++.|+.||+.
T Consensus 80 ie~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 80 IEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred HHHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 999999999999999999999999999999975
No 43
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.72 E-value=2.4e-18 Score=145.61 Aligned_cols=90 Identities=23% Similarity=0.379 Sum_probs=70.9
Q ss_pred eEEEeeCCccccc-cccccccchhhhhc-ccc------ceEecCCCCcccccC--------------Cccccc-----cC
Q psy17920 23 LSISHFNLEQETE-SCSRFIHGLDSAVK-SLV------AVVADQTKKCQTLYK--------------REYQKI-----GR 75 (393)
Q Consensus 23 ~~i~v~~p~k~~~-~~s~f~~~~~~~~~-~~~------~~v~rry~df~~l~~--------------P~K~~~-----g~ 75 (393)
++|+|+||+++++ +.+.|+ .+...+. ..| ..|.|||+||.||++ |+|... |+
T Consensus 1 ~~i~V~dP~~~~~~~~~~y~-~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~ 79 (118)
T cd06863 1 LECLVSDPQKELDGSSDTYI-SYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDR 79 (118)
T ss_pred CEEEEeCcccccCCCccCEE-EEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccC
Confidence 5899999999973 222221 1111111 222 369999999999999 788863 58
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 76 YEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 76 ~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
++++||++||++|+.||++|+.||+|+.|+.|+.||+.
T Consensus 80 ~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s 117 (118)
T cd06863 80 FSPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLES 117 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCC
Confidence 99999999999999999999999999999999999985
No 44
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.72 E-value=2e-18 Score=144.65 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=76.1
Q ss_pred eEEEeeCCccccccccccccchhhhhcc------ccceEecCCCCcccccC---------------CccccccCCChHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKS------LVAVVADQTKKCQTLYK---------------REYQKIGRYEEQFI 81 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~------~~~~v~rry~df~~l~~---------------P~K~~~g~~~~~Fi 81 (393)
+.|+|+||.+++++.+.|+ .++..+.. .+.+|.||||||+|||+ |+|.+.|+|+++||
T Consensus 1 ~~~~v~~~~~~~~~~~~yv-~Y~I~v~~~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~~~~~~~~i 79 (112)
T cd07301 1 LLFEVTDANVVQDAHSKYV-LYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLRKNFTAETI 79 (112)
T ss_pred CEEEECCCeEeccCCcCEE-EEEEEEEecCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCcccCCCCHHHH
Confidence 4689999999999777654 23333321 13479999999999999 78999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy17920 82 EHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112 (393)
Q Consensus 82 e~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~ 112 (393)
++||.+|+.||++|+.||.|..++.|+.||-
T Consensus 80 e~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~ 110 (112)
T cd07301 80 AKRSRAFEQFLCHLHSLPELRASPAFLEFFY 110 (112)
T ss_pred HHHHHHHHHHHHHHhcCHHHhcChHHHHHhC
Confidence 9999999999999999999999999999985
No 45
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.71 E-value=3.1e-18 Score=144.66 Aligned_cols=90 Identities=20% Similarity=0.363 Sum_probs=75.1
Q ss_pred eEEEeeCCccccccccccccchhhhhccc-----cceEecCCCCcccccC------------------CccccccCCChH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKSL-----VAVVADQTKKCQTLYK------------------REYQKIGRYEEQ 79 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~~-----~~~v~rry~df~~l~~------------------P~K~~~g~~~~~ 79 (393)
-.++|+||++++.+|..|.....+..... ..+|.||||||.|||+ |+|.+.|+++++
T Consensus 3 ~~~~V~d~~~~~~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~~g~~~~~ 82 (117)
T cd06881 3 RSFTVTDTRRHKKGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKYFGRFDAA 82 (117)
T ss_pred EEEEecCcceecCceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCcccCCCCHH
Confidence 46899999999876665533323211122 2479999999999986 899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy17920 80 FIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112 (393)
Q Consensus 80 Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~ 112 (393)
||++||.+|+.||++|+.||.|..++.|+.||+
T Consensus 83 ~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~ 115 (117)
T cd06881 83 VIEERRQAILELLDFVGNHPALYQSSAFQQFFE 115 (117)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhc
Confidence 999999999999999999999999999999997
No 46
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.71 E-value=4e-18 Score=146.33 Aligned_cols=91 Identities=19% Similarity=0.403 Sum_probs=71.2
Q ss_pred eEEEeeCCcccccccc-----cc-ccchhhhhc--cc-------cceEecCCCCcccccC--------------Ccccc-
Q psy17920 23 LSISHFNLEQETESCS-----RF-IHGLDSAVK--SL-------VAVVADQTKKCQTLYK--------------REYQK- 72 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s-----~f-~~~~~~~~~--~~-------~~~v~rry~df~~l~~--------------P~K~~- 72 (393)
.+|+|+||++.+++.. .| ++.+.+... .+ ...|.|||+||.||++ |+|.+
T Consensus 1 ~~i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 80 (129)
T cd06864 1 MEITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAM 80 (129)
T ss_pred CeeEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCccee
Confidence 3799999999998421 21 111111111 11 1269999999999999 78886
Q ss_pred -------ccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 73 -------IGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 73 -------~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
.|+|+++|||+||++||.||++|+.||+|+.|++|+.||+.
T Consensus 81 ~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~~ 128 (129)
T cd06864 81 FMWQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLTH 128 (129)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcCC
Confidence 35899999999999999999999999999999999999985
No 47
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.71 E-value=4.3e-18 Score=144.43 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=70.1
Q ss_pred EEEeeCCccccccc------ccc-ccchhhhhcc--c---cceEecCCCCcccccC--------------Ccccccc---
Q psy17920 24 SISHFNLEQETESC------SRF-IHGLDSAVKS--L---VAVVADQTKKCQTLYK--------------REYQKIG--- 74 (393)
Q Consensus 24 ~i~v~~p~k~~~~~------s~f-~~~~~~~~~~--~---~~~v~rry~df~~l~~--------------P~K~~~g--- 74 (393)
.|+|+||++++++. +.| ++.+...... + ...|.|||+||.||++ |+|.+.+
T Consensus 1 ~i~v~dp~~~~~~~~~~~~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~ 80 (120)
T cd06865 1 KITVSDPKKEQEPSRVPLGGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQV 80 (120)
T ss_pred CeEecCcceecCCccccCCCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCccccccc
Confidence 48999999998731 111 1111111110 1 1279999999999999 7888864
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 75 RYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 75 ~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+++++|||+||++|+.||++|+.||.|+.|+.|+.||+.
T Consensus 81 ~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06865 81 MQSAEFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTL 119 (120)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCceeecCcHHHHhccC
Confidence 479999999999999999999999999999999999985
No 48
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.70 E-value=6.2e-18 Score=143.72 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=68.6
Q ss_pred CceEEEeeCCccccccccccccchhhhhc---ccc------ceEecCCCCcccccC----------------Ccccccc-
Q psy17920 21 HILSISHFNLEQETESCSRFIHGLDSAVK---SLV------AVVADQTKKCQTLYK----------------REYQKIG- 74 (393)
Q Consensus 21 ~~~~i~v~~p~k~~~~~s~f~~~~~~~~~---~~~------~~v~rry~df~~l~~----------------P~K~~~g- 74 (393)
+.+.|.|+||.+.|++ +.+.|+ +.| .+|+|||+||.|||+ |+|.+.+
T Consensus 1 ~~l~i~vsD~~~~~d~-------V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~ 73 (141)
T cd07291 1 PSLQIDIPDALSERDK-------VKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDG 73 (141)
T ss_pred CccEEEeccccccCCC-------EEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccc
Confidence 3689999999999993 333332 222 369999999999999 8998752
Q ss_pred -------------CC-ChHHHHHH--------------HHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 75 -------------RY-EEQFIEHR--------------KNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 75 -------------~~-~~~Fie~R--------------r~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
.+ .++|+++| +++||+||+|||.||+|+.|++|+.||+.
T Consensus 74 ~~~k~~kl~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~ 140 (141)
T cd07291 74 PREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEY 140 (141)
T ss_pred hHHhhhhcccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCeeccCcchhhhccC
Confidence 12 35788866 45699999999999999999999999985
No 49
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.69 E-value=1.1e-17 Score=141.93 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=67.6
Q ss_pred ceEEEeeCCccccccccccccchhhhhc---ccc------ceEecCCCCcccccC----------------Ccccccc--
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVK---SLV------AVVADQTKKCQTLYK----------------REYQKIG-- 74 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~---~~~------~~v~rry~df~~l~~----------------P~K~~~g-- 74 (393)
.+.|.|+||.+.|++ +.+.|. +.| .+|+|||+||.|||+ |+|...|
T Consensus 2 ~l~v~isD~~~~~d~-------V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~ 74 (141)
T cd07292 2 ALQVDISDALSERDK-------VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDAS 74 (141)
T ss_pred ceEEEcccccccCCc-------eEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccch
Confidence 589999999999994 333332 233 379999999999998 8887653
Q ss_pred ------------CCChHHHH---------------HHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 75 ------------RYEEQFIE---------------HRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 75 ------------~~~~~Fie---------------~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
.+..++.+ +|+.+||+||+|||.||+|+.|.+|+.||+.
T Consensus 75 ~~k~~klg~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~ 140 (141)
T cd07292 75 REKLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEY 140 (141)
T ss_pred HHHHHhhccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhheecc
Confidence 23334444 7779999999999999999999999999985
No 50
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=99.69 E-value=8.7e-15 Score=151.31 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 274 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 274 ~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
+.+..+...++.|++.+..|+++|...+..|++.+++.|++.++++++.+...|..+-+.+.
T Consensus 461 ~~L~~a~~d~~~i~e~~~~el~~~~~~~~~~l~~~l~~~~~~hie~~~~~Le~W~~v~~~l~ 522 (524)
T COG5391 461 EQLAIAEKDAQEINEELKNELKFFFSVRNSDLEKILKSVADSHIEWAEENLEIWKSVKEQLD 522 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56777788899999999999999999999999999999999999999999999999866554
No 51
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.68 E-value=8.4e-15 Score=136.83 Aligned_cols=177 Identities=11% Similarity=0.175 Sum_probs=136.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy17920 154 QETESCSRFIHGLDSAVKSLVAVVADQTKKC------QTLYKREYQKIGID--RSHLRDALKKTGDTYNELGKLFEEQPK 225 (393)
Q Consensus 154 ~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~------~~~~~~~~~~lg~d--~s~L~~al~~lg~~~~~i~~~~~~Q~~ 225 (393)
.....|.-.++++.-....|.....++++.+ .++|++.+..||.. .+.|++|+..+|++.+.++++...|+.
T Consensus 18 ~el~~~rp~vk~~y~~~~~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~kLg~v~~~v~dl~~~QA~ 97 (230)
T cd07625 18 TELAEFRPLVKSIYLTAQDLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEETHHGLGNLYEKFGKVLTAVGDIDSIQAT 97 (230)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344555444444444444444444444322 34677777777773 356999999999999999999999999
Q ss_pred ccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH-----------HHhhhhccccH--------------HHHHHHH
Q psy17920 226 LDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-----------EKMTTENKMEA--------------NRLQEVL 280 (393)
Q Consensus 226 ~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-----------erl~~e~k~~~--------------~~ve~~~ 280 (393)
.|+..|.|+|.+|++++.+++.+|..|..++..+.++ +|+...+++.. ..+++++
T Consensus 98 ~d~~tl~d~L~~~~~~~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~ 177 (230)
T cd07625 98 VDMATLYDGLEWISRDAYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLS 177 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987765444432 45544444322 3345557
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 281 KRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 281 ~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
.+++.||..++.|+.||+.++..||+.++++|+..+|+++.+.+..|+..
T Consensus 178 ~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~lE~~ 227 (230)
T cd07625 178 LKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSLLERI 227 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999999999875
No 52
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.66 E-value=4.8e-17 Score=136.68 Aligned_cols=90 Identities=27% Similarity=0.449 Sum_probs=74.0
Q ss_pred eEEEeeCCccccccccccccchhhhhc-cc------cceEecCCCCcccccC--------------CccccccCCChH--
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK-SL------VAVVADQTKKCQTLYK--------------REYQKIGRYEEQ-- 79 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~------~~~v~rry~df~~l~~--------------P~K~~~g~~~~~-- 79 (393)
++|.|+||+++|++.+.|+ .+...+. .. ...|.|||+||.|||. |+|...|+++..
T Consensus 1 ~~~~V~~p~~~~~~~~~y~-~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~~~~~~~~~ 79 (114)
T cd06859 1 FEISVTDPVKVGDGMSAYV-VYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAVGRFKVKFE 79 (114)
T ss_pred CEEEEeCcceecCCccCEE-EEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCcccCccCccHH
Confidence 5799999999999655433 1221111 11 1379999999999999 899999988765
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 80 FIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 80 Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
||++||++|+.||++|+.||.|+.|+.|+.||++
T Consensus 80 ~ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~~ 113 (114)
T cd06859 80 FIEKRRAALERFLRRIAAHPVLRKDPDFRLFLES 113 (114)
T ss_pred HHHHHHHHHHHHHHHHhcChhhccCcHHHhhcCC
Confidence 9999999999999999999999999999999975
No 53
>KOG2527|consensus
Probab=99.65 E-value=1.4e-17 Score=138.98 Aligned_cols=93 Identities=19% Similarity=0.332 Sum_probs=73.8
Q ss_pred CCceEEEeeCCccccccccccccchhhhhc-ccc------ceEecCCCCcccccC--------------Ccccccc--CC
Q psy17920 20 DHILSISHFNLEQETESCSRFIHGLDSAVK-SLV------AVVADQTKKCQTLYK--------------REYQKIG--RY 76 (393)
Q Consensus 20 ~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~~------~~v~rry~df~~l~~--------------P~K~~~g--~~ 76 (393)
.+-++|.|.||.+++++...|+ .++..+. +.| ++|.|||+||+|||+ |.|.+.- +|
T Consensus 15 ~nfLeI~V~nPrt~~~~~~~yt-dYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~~~~~f 93 (144)
T KOG2527|consen 15 ENFLEIDVINPRTHGDGKNRYT-DYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALFRQLPF 93 (144)
T ss_pred cceEEEEeeCCcccccccccce-eEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHhcCch
Confidence 4569999999999887543332 1222222 334 489999999999999 8887764 33
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 77 EEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 77 ~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
. +|||+||++|+.||+.||.||++..+..|+.||+..
T Consensus 94 r-e~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~ 130 (144)
T KOG2527|consen 94 R-EFIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSE 130 (144)
T ss_pred H-HHHHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhh
Confidence 3 999999999999999999999999999999999864
No 54
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.65 E-value=5.7e-17 Score=135.94 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=69.5
Q ss_pred EEeeCCcccccccc-ccccchhhhhccccceEecCCCCcccccC--------------Cccccc---------cCCChHH
Q psy17920 25 ISHFNLEQETESCS-RFIHGLDSAVKSLVAVVADQTKKCQTLYK--------------REYQKI---------GRYEEQF 80 (393)
Q Consensus 25 i~v~~p~k~~~~~s-~f~~~~~~~~~~~~~~v~rry~df~~l~~--------------P~K~~~---------g~~~~~F 80 (393)
|.|.||.+.+++.+ .|+. +. +......|.|||+||.||++ |+|... |+++++|
T Consensus 2 ~~i~~~~~~~~~~~~~y~~-Y~--I~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~ 78 (112)
T cd06867 2 IQIVDAGKSSEGGSGSYIV-YV--IRLGGSEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSKAKNDAKI 78 (112)
T ss_pred cEEccCccccCCCccCEEE-EE--EEeeeEEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhccccccccCcHHH
Confidence 78999999988422 2211 11 11122579999999999999 778764 3689999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 81 IEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 81 ie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
||+||++|+.||++|+.||+|+.|+.|+.||+++
T Consensus 79 ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06867 79 IERRKRMLQRFLNRCLQHPILRNDIVFQKFLDPN 112 (112)
T ss_pred HHHHHHHHHHHHHHHhcChhhccCcHHHHhcCCC
Confidence 9999999999999999999999999999999874
No 55
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.62 E-value=1.5e-16 Score=136.91 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=68.9
Q ss_pred EeeCCcccccccccccc-chhhhhc-------------ccc---ceEecCCCCcccccC----------------Ccccc
Q psy17920 26 SHFNLEQETESCSRFIH-GLDSAVK-------------SLV---AVVADQTKKCQTLYK----------------REYQK 72 (393)
Q Consensus 26 ~v~~p~k~~~~~s~f~~-~~~~~~~-------------~~~---~~v~rry~df~~l~~----------------P~K~~ 72 (393)
.|++|++.|+|.+.|+. .+.+-.. .+| .+|.|||+||.|||+ |+|.+
T Consensus 7 ~i~~~e~~g~g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P~k~~ 86 (132)
T cd06893 7 TITAKEYKGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGPPKRL 86 (132)
T ss_pred eeecchhcCCCCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCCCCccC
Confidence 57899999996655431 1111100 122 279999999999975 55655
Q ss_pred ----ccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 73 ----IGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 73 ----~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
.|++|++|||+||.+||.||++|+.||.|+.|++|+.||..
T Consensus 87 p~lp~g~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 87 FDLPFGNMDKDKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 58999999999999999999999999999999999999964
No 56
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.60 E-value=2.6e-16 Score=130.43 Aligned_cols=83 Identities=22% Similarity=0.285 Sum_probs=67.0
Q ss_pred CCccccccccccccchhhhhccccceEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHH
Q psy17920 29 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDY 94 (393)
Q Consensus 29 ~p~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~r 94 (393)
+|++.|......+ +..-+......|.|||+||.||+. |+|.+.|+++++|+++||++|+.||++
T Consensus 8 ~~~~~g~~~~y~~--Y~i~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~ 85 (105)
T cd06866 8 VPEKKGLFLKHVE--YEVSSKRFKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIGGSADREFLEARRRGLSRFLNL 85 (105)
T ss_pred cccccCcccCCEE--EEEEEecCCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCHHHHHHHHHHHHHHHHH
Confidence 6888876321111 111111233579999999999998 899999999999999999999999999
Q ss_pred HhcCCCccccccccccccc
Q psy17920 95 VCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 95 v~~HPvL~~~~~~~~FL~~ 113 (393)
|+.||+|+.|+.|+.||+.
T Consensus 86 l~~~p~l~~s~~l~~FL~~ 104 (105)
T cd06866 86 VARHPVLSEDELVRTFLTE 104 (105)
T ss_pred HhcChhhccChHHHhhcCC
Confidence 9999999999999999985
No 57
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.59 E-value=5.4e-16 Score=133.27 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=68.2
Q ss_pred ceEEEeeCCccccccccccccchhhhhccc--c-ceEecCCCCcccccC----------------Cccccc---------
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVKSL--V-AVVADQTKKCQTLYK----------------REYQKI--------- 73 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~--~-~~v~rry~df~~l~~----------------P~K~~~--------- 73 (393)
.++|.|+|.-..++.-+. ....++-...| | .+|+|||+||.|||+ |+|...
T Consensus 2 ~~~~~i~da~~~~~~V~Y-~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k~~k 80 (141)
T cd06892 2 SLQVDISDALSERDKVKF-TVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREKLQK 80 (141)
T ss_pred ceeeecccccccCCeEEE-EEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccceeee
Confidence 577888888887772111 11111111122 1 379999999999998 888643
Q ss_pred -----cCCChHHHHHHHHHH---------------HHHHHHHhcCCCccccccccccccc
Q psy17920 74 -----GRYEEQFIEHRKNQL---------------QSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 74 -----g~~~~~Fie~Rr~~L---------------~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
|.|+.+|+++|+.+| ++||+|||.||+|+.+.+|+.||+.
T Consensus 81 lg~~d~~~~~ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~ 140 (141)
T cd06892 81 LGEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLEY 140 (141)
T ss_pred cccCccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhcC
Confidence 358899999999999 5899999999999999999999985
No 58
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.57 E-value=9.1e-16 Score=128.91 Aligned_cols=63 Identities=19% Similarity=0.352 Sum_probs=59.8
Q ss_pred cceEecCCCCcccccC---------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 52 VAVVADQTKKCQTLYK---------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 52 ~~~v~rry~df~~l~~---------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
+..|.||||||.|||. |+|.+.|+++++||++||.+|+.||++|++||.|..++.|+.||+.+
T Consensus 35 ~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 112 (114)
T cd07300 35 KVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLTGNFSEEIIAERRVALRDYLTLLYSLRFVRRSQAFQDFLTHP 112 (114)
T ss_pred eEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhCCc
Confidence 3479999999999999 79999999999999999999999999999999999999999999975
No 59
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.57 E-value=9.6e-16 Score=128.52 Aligned_cols=61 Identities=20% Similarity=0.376 Sum_probs=58.0
Q ss_pred ceEecCCCCcccccC---------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK---------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 53 ~~v~rry~df~~l~~---------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
..|.||||||.|||+ |.|.+.|+++++||++||.+|+.||++|+.||.|+.|++|+.||+.
T Consensus 36 ~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 111 (112)
T cd07279 36 AFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLMGNFSSELIAERSRAFEQFLGHILSIPNLRDSKAFLDFLQG 111 (112)
T ss_pred EEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeecccCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCC
Confidence 479999999999998 7899999999999999999999999999999999999999999974
No 60
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.55 E-value=1.5e-15 Score=128.69 Aligned_cols=59 Identities=19% Similarity=0.358 Sum_probs=55.9
Q ss_pred ceEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
.+|.||||||.|||+ |+|.+.+ +++||++||++|+.||++|++||.|+.|++|+.||..
T Consensus 47 ~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~--~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06868 47 FMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALFV--SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGV 119 (120)
T ss_pred EEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCcccC--CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcC
Confidence 379999999999999 7899887 8999999999999999999999999999999999975
No 61
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.53 E-value=2.3e-15 Score=125.07 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=74.4
Q ss_pred eEEEeeCCccccccccccccchhhhhccc---cceEecCCCCcccccC------------Cccccc-cCCChHHHHHHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKSL---VAVVADQTKKCQTLYK------------REYQKI-GRYEEQFIEHRKN 86 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~~---~~~v~rry~df~~l~~------------P~K~~~-g~~~~~Fie~Rr~ 86 (393)
+.++|.+.+.++++.+.|+ .+...+... ...|.||||||.+||+ |+|.+. |+++++|||+||.
T Consensus 1 ~~~~v~~~~~~~~~~~~y~-vY~I~v~~~~~~~w~v~RRYsdF~~L~~~L~~~~~~~~~lP~K~~~~~~~~~~fie~Rr~ 79 (107)
T cd06872 1 LSCRVLGAEIVKSGSKSFA-VYSVAVTDNENETWVVKRRFRNFETLHRRLKEVPKYNLELPPKRFLSSSLDGAFIEERCK 79 (107)
T ss_pred CeeEEeeeEEEecCCccEE-EEEEEEEECCCceEEEEehHHHHHHHHHHHHhccCCCCCCCCccccCCCCCHHHHHHHHH
Confidence 4689999999998655443 222222221 3479999999999999 899887 6899999999999
Q ss_pred HHHHHHHHHhcCCCccccccccccccc
Q psy17920 87 QLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 87 ~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+|+.||++|+.||.|..|+.|+.||..
T Consensus 80 ~Le~yL~~l~~~p~i~~s~~~~~FL~~ 106 (107)
T cd06872 80 LLDKYLKDLLVIEKVAESHEVWSFLSA 106 (107)
T ss_pred HHHHHHHHHhcChhhhcCHHHHHHhcc
Confidence 999999999999999999999999964
No 62
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.50 E-value=7.3e-15 Score=124.69 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=68.3
Q ss_pred EEEeeCCccccccc--cccccchhhhhc-cc----cceEecCCCCcccccC-----------------Ccccccc----C
Q psy17920 24 SISHFNLEQETESC--SRFIHGLDSAVK-SL----VAVVADQTKKCQTLYK-----------------REYQKIG----R 75 (393)
Q Consensus 24 ~i~v~~p~k~~~~~--s~f~~~~~~~~~-~~----~~~v~rry~df~~l~~-----------------P~K~~~g----~ 75 (393)
+|.|.||+.++... +.|+ .+...+. .. ...|.|||+||.|||. |+|.+.+ +
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv-~Y~I~v~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~~~~ 82 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYV-VWKITIETKDLIGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSRVN 82 (120)
T ss_pred EEEcCCCeEECCCCCCCCEE-EEEEEEEeCCCCCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCccccccccc
Confidence 57888888886532 2222 1111111 11 2369999999999988 6788877 8
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy17920 76 YEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112 (393)
Q Consensus 76 ~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~ 112 (393)
++++|||+||++|+.||++|+.||.|+.|+.|+.||.
T Consensus 83 ~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~ 119 (120)
T cd07280 83 LNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLL 119 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhC
Confidence 9999999999999999999999999999999999996
No 63
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.48 E-value=1.7e-14 Score=119.74 Aligned_cols=89 Identities=16% Similarity=0.261 Sum_probs=69.0
Q ss_pred ceEEEeeCCccccccccccccchhhhhccccceEecCCCCcccccC--------------CccccccCCChHHHHHHHHH
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQ 87 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~ 87 (393)
.+.|+|.+.....+..+.|+ .++..+. ....|.||||||.+||+ |+|.+.+ ++++|||+||.+
T Consensus 3 ~~~i~Ip~~~~~~~~~~~yv-vY~I~~~-~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~~-~~~~~ie~Rr~~ 79 (106)
T cd06886 3 SVPISIPDYKHVEQNGEKFV-VYNIYMA-GRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPFS-LSEQQLDARRRG 79 (106)
T ss_pred cceEecCCcceEcCCCCcEE-EEEEEEc-CCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcCC-CCHHHHHHHHHH
Confidence 46777877765554333332 1222222 23479999999999999 7887775 799999999999
Q ss_pred HHHHHHHHhcCCCccccccccccccc
Q psy17920 88 LQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 88 L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
|+.||+.|+.||+|..|+.|+.||+-
T Consensus 80 Le~fL~~l~~~p~l~~s~~~~~FL~~ 105 (106)
T cd06886 80 LEQYLEKVCSIRVIGESDIMQDFLSD 105 (106)
T ss_pred HHHHHHHHhcCcccccCHHHHHHhcc
Confidence 99999999999999999999999973
No 64
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.48 E-value=7.7e-12 Score=118.96 Aligned_cols=186 Identities=15% Similarity=0.242 Sum_probs=145.8
Q ss_pred CCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhccc------h-------hHHHHHHH
Q psy17920 147 ISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQT------LYKREYQKIGID------R-------SHLRDALK 207 (393)
Q Consensus 147 ~~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~------~~~~~~~~lg~d------~-------s~L~~al~ 207 (393)
..|.+....++....++..+.+++.+|..++.+++++..+ .|+..++.||.. . ..|+++|.
T Consensus 15 ~~p~~~~~~~~~~r~~I~~l~~~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 94 (246)
T cd07597 15 LLPPDFQEQWANSRERIRRLLESWTKLRVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLS 94 (246)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHH
Confidence 3456777888999999999999999999999999887533 233344444441 1 35999999
Q ss_pred HHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHH--------HHHHHHHHH-H---hhhh--ccc--
Q psy17920 208 KTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKD--------ILNKKREYE-K---MTTE--NKM-- 271 (393)
Q Consensus 208 ~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~--------al~k~re~e-r---l~~e--~k~-- 271 (393)
.+|..+..++++..+++......+.|.|+.|.+++.|++++|..|.. +..++...+ | +... ++.
T Consensus 95 ~~s~~~~~~s~~~~~~a~~~~~~vlE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~~~~~~~~e 174 (246)
T cd07597 95 SLSKHFQLLSDLSEDEARAEEDGVLEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRAKPDVKGAE 174 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCCCchhH
Confidence 99999999999999999999999999999999999999999998773 222222221 1 1111 111
Q ss_pred ----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHh
Q psy17920 272 ----------EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 272 ----------~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~ 333 (393)
+..++.....|.-.+..|++.|+.+||.... .+..++++|+..|+.+|.+.+..|....+.
T Consensus 175 ~ekl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~~~l~~~W~~L~~~ 245 (246)
T cd07597 175 VDKLEASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-LLTSILQEFVKDEIQYHSELANVWERLVPK 245 (246)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1133444455788888999999999999997 999999999999999999999999998765
No 65
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.47 E-value=1.8e-14 Score=121.96 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=58.4
Q ss_pred ceEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
..|.|||+||.|||+ |+|.+.|+++++||++||.+||.||+.|+.||.|+.|+.|+.||+.
T Consensus 44 w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~~ 118 (119)
T cd06877 44 WSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIFGPKSYEFLESKREIFEEFLQKLLQKPELRGSELLYDFLSP 118 (119)
T ss_pred eEEEechHHHHHHHHHHHHHCCCCCCCCCcCCcccCCCCHHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCCC
Confidence 379999999999999 8999999999999999999999999999999999999999999974
No 66
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.45 E-value=2.5e-14 Score=121.41 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=71.3
Q ss_pred ceEEEeeCCccccccccccccchhhhhc-cc------cceEecCCCCcccccC--------------CccccccCCChHH
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVK-SL------VAVVADQTKKCQTLYK--------------REYQKIGRYEEQF 80 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~------~~~v~rry~df~~l~~--------------P~K~~~g~~~~~F 80 (393)
++.++|.||++.|++.+.|+. +...+. .. +..|.|||+||.|||. |.|.+.|+++++|
T Consensus 4 ~~~~~i~~~~~~~~~~~~y~~-Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~~~~~~~~ 82 (120)
T cd06873 4 KLTAVIINTGIVKEHGKTYAV-YAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTFNNLDRAF 82 (120)
T ss_pred EEEEEEeccEEEccCCceEEE-EEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCcccCCCCHHH
Confidence 578999999999997666532 222222 11 2379999999999998 8899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccc
Q psy17920 81 IEHRKNQLQSFVDYVCRHPVLCRSPVWQHF 110 (393)
Q Consensus 81 ie~Rr~~L~~fl~rv~~HPvL~~~~~~~~F 110 (393)
|++||.+|+.||+.|+.+|.|..+++++.+
T Consensus 83 ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~ 112 (120)
T cd06873 83 LEKRRKMLNQYLQSLLNPEVLDANPGLQEI 112 (120)
T ss_pred HHHHHHHHHHHHHHHhCCHhhccCHHHHHH
Confidence 999999999999999999999999654443
No 67
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.45 E-value=3.1e-14 Score=122.17 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=57.4
Q ss_pred eEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 54 VVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 54 ~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
.|.||||||+|||+ |+|...|+++++|||+||.+||.||++|+.||.|+.++.++.||+.
T Consensus 64 ~V~RRYSDF~~L~~~L~~~~p~~~lPplPpK~~l~~~~~~fiEeRR~gLE~fLq~Ll~~p~l~~s~~v~~FLel 137 (138)
T cd06879 64 GVLRRFNDFLKLHTDLKKLFPKKKLPAAPPKGLLRMKNRALLEERRHSLEEWMGKLLSDIDLSRSVPVASFLEL 137 (138)
T ss_pred eeecCchHHHHHHHHHHHHCCCCcCCCCCCcccccCCCHHHHHHHHHHHHHHHHHHHcCccccCCHHHHHHhCC
Confidence 59999999999999 7999999999999999999999999999999999999999999975
No 68
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.44 E-value=2.6e-14 Score=119.32 Aligned_cols=60 Identities=22% Similarity=0.458 Sum_probs=57.9
Q ss_pred eEecCCCCcccccC-------------Ccccccc-CCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 54 VVADQTKKCQTLYK-------------REYQKIG-RYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 54 ~v~rry~df~~l~~-------------P~K~~~g-~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
.|.|||+||.|||. |+|.+.| +++++||++||.+|+.||++|+.||.|..++.++.||+.
T Consensus 35 ~v~RRYseF~~L~~~L~~~~~~~~~~lP~K~~~~~~~~~~~ie~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~ 108 (109)
T cd06870 35 FVFRRYAEFDKLYESLKKQFPASNLKIPGKRLFGNNFDPDFIKQRRAGLDEFIQRLVSDPKLLNHPDVRAFLQM 108 (109)
T ss_pred EEEeehHHHHHHHHHHHHHCcccCcCCCCCcccccCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCc
Confidence 69999999999998 8999999 999999999999999999999999999999999999986
No 69
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.44 E-value=2.7e-14 Score=119.33 Aligned_cols=61 Identities=18% Similarity=0.289 Sum_probs=57.1
Q ss_pred ceEecCCCCcccccC-------------Ccccccc-CCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK-------------REYQKIG-RYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 53 ~~v~rry~df~~l~~-------------P~K~~~g-~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
..|.||||||.|||. |+|.+.| +++++||++||.+|+.||++|+.||.|+.++.++.||..
T Consensus 35 ~~v~RRYsdF~~L~~~L~~~~~~~~~~lP~K~~~~~~~~~~fie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~ 109 (110)
T cd07276 35 WFVFRRYTDFVRLNDKLKQMFPGFRLSLPPKRWFKDNFDPDFLEERQLGLQAFVNNIMAHKDIAKCKLVREFFCL 109 (110)
T ss_pred EEEEEehHHHHHHHHHHHHHCCCCCCCCCCcceecccCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhcc
Confidence 369999999999999 8898887 699999999999999999999999999999999999975
No 70
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.41 E-value=1e-13 Score=115.36 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=57.5
Q ss_pred ceEecCCCCcccccC--------------Ccccccc--CCChHHHHHHHHHHHHHHHHHhcCC--Cccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIG--RYEEQFIEHRKNQLQSFVDYVCRHP--VLCRSPVWQHFITC 113 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g--~~~~~Fie~Rr~~L~~fl~rv~~HP--vL~~~~~~~~FL~~ 113 (393)
..|.|||+||.|||. |+|.+.| +++++|||+||.+|+.||+.|+.|| .|+.|+.|+.||+.
T Consensus 29 ~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~ 107 (108)
T cd06897 29 YTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLSTSSNPKLVEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLNL 107 (108)
T ss_pred EEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEecccCCCHHHHHHHHHHHHHHHHHHHcCCccchhcCHHHHHHhCC
Confidence 479999999999998 8999887 9999999999999999999999999 99999999999974
No 71
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.40 E-value=7.3e-14 Score=118.47 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=59.2
Q ss_pred ceEecCCCCcccccC-----------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK-----------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 53 ~~v~rry~df~~l~~-----------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
..|.|||+||.|||+ |+|.+.|+++++||++||.+|+.||++|+.||.|+.++.++.||+.+
T Consensus 38 w~V~RRYsdF~~Lh~~L~~~~~~~plP~K~~~g~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 110 (120)
T cd06871 38 WQVIRRYNDFDLLNASLQISGISLPLPPKKLIGNMDREFIAERQQGLQNYLNVILMNPILASCLPVKKFLDPN 110 (120)
T ss_pred eEEEeeHHHHHHHHHHHHHcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCHHHHHhcCcc
Confidence 379999999999998 89999999999999999999999999999999999999999999854
No 72
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.35 E-value=4.1e-13 Score=113.26 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=59.4
Q ss_pred ceEecCCCCcccccC-------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK-------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 53 ~~v~rry~df~~l~~-------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
..|.|||+||.+||. |+|.+.|+++++||++||.+|+.||+.|+.||.+..++.|..||...
T Consensus 31 w~V~RRYseF~~L~~~L~~~~~~~~~~~P~Kk~~~~~~~~~ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~ 105 (116)
T cd06875 31 WTVKHRYSDFAELHDKLVAEHKVDKDLLPPKKLIGNKSPSFVEKRRKELEIYLQTLLSFFQKTMPRELAHFLDFH 105 (116)
T ss_pred EEEEecHHHHHHHHHHHHHHcCcccCcCCCccccCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHhCCC
Confidence 379999999999999 89999999999999999999999999999999999999999999876
No 73
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.31 E-value=5.2e-13 Score=110.47 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=54.2
Q ss_pred ceEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
..|.||||||.+|+. |+|.+.+ ++++|||+||.+|+.||+.|+.||.|..++.++.||..
T Consensus 29 ~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~-~~~~~ie~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~~ 102 (104)
T cd06885 29 LHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLP-LTPAQLEERRLQLEKYLQAVVQDPRIANSDIFNSFLLN 102 (104)
T ss_pred EEEEechHHHHHHHHHHHHHcCCCCCCCCCCCcccc-CCHHHHHHHHHHHHHHHHHHhcChhhccCHHHHHHHHh
Confidence 358889999998888 7888774 88999999999999999999999999999999999964
No 74
>KOG1660|consensus
Probab=99.28 E-value=3.5e-10 Score=108.87 Aligned_cols=238 Identities=16% Similarity=0.194 Sum_probs=159.6
Q ss_pred HHHHHHHHhcCCCccccccccccccccchhhHhhhhhhhhccccccchhhhhccCCCCCCC----ccchhHhHHHHHHHH
Q psy17920 88 LQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLGPSLFLAIETPERSIS----HFNLEQETESCSRFI 163 (393)
Q Consensus 88 L~~fl~rv~~HPvL~~~~~~~~FL~~~~e~~wk~~~~~ae~~~~~g~~~~~~v~~~~~~~~----~~~~d~~~d~f~~~l 163 (393)
=+.||+||+.||+|+.|..|..||+.+.+. ..+-.++.+..| +|++.+...+..+. ..++++.++.=+.|+
T Consensus 137 hEvfl~RlaahPvlr~d~nf~vflEy~qdL----svr~KNkkE~~~-~f~k~~~kSAdeillSg~lkdVddFfe~ek~fl 211 (399)
T KOG1660|consen 137 HEVFLRRLAAHPVLRLDQNFSVFLEYDQDL----SVRGKNKKESFG-GFLKRFVKSADEILLSGKLKDVDDFFETEKNFL 211 (399)
T ss_pred HHHHHHHHhcCCeeecccchhhhhhhcccc----cccccchhhhhh-HHHHHHhhhhhheeeecceeehhHHHHhhhHHH
Confidence 367999999999999999999999986222 122222333333 56666554332221 456788888888898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHH
Q psy17920 164 HGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID--------RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235 (393)
Q Consensus 164 ~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d--------~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L 235 (393)
..+...+..-.--+.++.+.|. ..+.+|..+|+- ...++..+..+|+.++....+...-+......|.+.|
T Consensus 212 ~ey~~~ikdas~kadKmt~~hK-~~~ddy~~i~~~~~~lg~ed~~~v~~~~l~~~e~f~~~~k~e~Rvs~dedlkL~d~l 290 (399)
T KOG1660|consen 212 KEYHFRIKDASLKADKLTRAHK-SVGDDYDQIGNRLNRLGEEDAANVKKFQLKEAEYFEEESKVERRVSSDEDLKLGDTL 290 (399)
T ss_pred HHHhhHHhhhccchHHhhhhcc-cccccHHHHHHHHHHhhhhhhcccceeeecchhHHHHHHhHhhhhchHHHHHHHHHh
Confidence 8888777655544555443332 234467766661 1124444555555666655543333322335689999
Q ss_pred HHHHhHHhhhhhHHHHHHHHHHHHHHHHHh----hhhccc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 236 HIYKGIITSMPDILGLHKDILNKKREYEKM----TTENKM---EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAA 308 (393)
Q Consensus 236 ~ey~~ll~s~~~v~~~~~~al~k~re~erl----~~e~k~---~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~ 308 (393)
+-|.+-..+.++.+-.+...|..+..+.|. ...+|- .+..-.++=+.||.||.+.+.|+--|...|+.-|+.-
T Consensus 291 ~yy~r~~~aakdllyRr~Rcl~~ye~ank~l~kar~knkdv~~ae~~q~e~c~kfe~~s~~~k~eli~fk~rrvaaf~kn 370 (399)
T KOG1660|consen 291 RYYDRDSCAAKDLLYRRERCLADYEAANKNLEKARAKNKDVHAAEAAQQEACQKFESISESAKEELIGFKTRRVAAFKKN 370 (399)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 999999999999999998888877765432 222221 1233344455799999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHH
Q psy17920 309 MKSFLTEQINFYQKDILNKKREY 331 (393)
Q Consensus 309 l~~yl~~qi~~~qk~a~~~~~~~ 331 (393)
|.++++..|++.+-...-...-.
T Consensus 371 l~el~eleikhak~~~~ll~~~~ 393 (399)
T KOG1660|consen 371 LVELSELEIKHAKTNYSLLRQCL 393 (399)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999998776665544443
No 75
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=99.26 E-value=7.7e-10 Score=104.04 Aligned_cols=93 Identities=35% Similarity=0.562 Sum_probs=74.9
Q ss_pred HHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 234 VLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFL 313 (393)
Q Consensus 234 ~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl 313 (393)
.|.-|-.++..-+..+...+.+ .|+. .+||++..+++.+++||+.|++++++||+|||.+|+.||+.+|+.||
T Consensus 143 lL~~~pdii~~hk~A~~k~ke~-~kl~------~e~K~~~~~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL 215 (237)
T PF10456_consen 143 LLSNFPDIISVHKGALQKVKEC-EKLS------DEGKMSQQEAEEVQRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYL 215 (237)
T ss_dssp HHHTHHHHHHHHHHHHHHCTCH-HHHH------HTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhCccHHHHHHHHHHHHHHH-HHHH------hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443332 2332 38999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhHHHHHHh
Q psy17920 314 TEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 314 ~~qi~~~qk~a~~~~~~~~~ 333 (393)
+.||.||++++..|+.+.+.
T Consensus 216 ~~Qi~Fyq~i~~kLe~a~~~ 235 (237)
T PF10456_consen 216 QQQIAFYQQIAEKLEQALQQ 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988653
No 76
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.24 E-value=2.8e-12 Score=108.29 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=55.3
Q ss_pred ceEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
..|.|||+||.|||. |+|...|+++++|||+||.+||.||+.|+.| .+..++.|..||+-.
T Consensus 32 w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~g~~~~~~ie~Rr~~Le~yL~~ll~~-~~~~~~~~~~~~~~~ 106 (118)
T cd07277 32 WNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAIGNKDAKFVEERRKRLQVYLRRVVNT-LIQTSPELTACPSKE 106 (118)
T ss_pred EEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHH-HHHhCchhhcCCCHH
Confidence 479999999999999 8999999999999999999999999999999 777788788888743
No 77
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.22 E-value=4.1e-12 Score=106.15 Aligned_cols=59 Identities=12% Similarity=0.215 Sum_probs=54.3
Q ss_pred ceEecCCCCcccccC-----------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK-----------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 53 ~~v~rry~df~~l~~-----------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
.+|.|||+||.+||. |+|.+ |+++++||++||.+||.||+.|+.||. .+..|..||+.+
T Consensus 33 ~~v~RRYseF~~Lh~~L~~~~~~p~~P~K~~-~~~~~~~ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~ 102 (110)
T cd06880 33 HTVEKRYSEFHALHKKLKKSIKTPDFPPKRV-RNWNPKVLEQRRQGLEAYLQGLLKINE--LPKQLLDFLGVR 102 (110)
T ss_pred EEEEccHHHHHHHHHHHHHHCCCCCCCCCCc-cCCCHHHHHHHHHHHHHHHHHHHcCcc--ccHHHHHHhCCC
Confidence 479999999999998 88886 778999999999999999999999998 589999999875
No 78
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.20 E-value=4.5e-12 Score=107.94 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=67.9
Q ss_pred ceEEEeeCCcccccccccc-ccchhhhhccc-cceEecCCCCcccccC----------------------CccccccCCC
Q psy17920 22 ILSISHFNLEQETESCSRF-IHGLDSAVKSL-VAVVADQTKKCQTLYK----------------------REYQKIGRYE 77 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f-~~~~~~~~~~~-~~~v~rry~df~~l~~----------------------P~K~~~g~~~ 77 (393)
.++++|.|+++... ...| ++.++...... ...|.|||+||.+||. |+|.+.|+.+
T Consensus 3 ~i~~~I~~~~~~~~-~~~y~vY~I~v~~~~~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~~~~~~ 81 (123)
T cd06882 3 AVSATIADIEEKRG-FTNYYVFVIEVKTKGGSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIYVGRKA 81 (123)
T ss_pred cEEEEEeeeeEEeC-CCCEEEEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCeecCccH
Confidence 47899999987633 2221 11111111111 2379999999999988 4577777755
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCC-cccccccccccccc
Q psy17920 78 EQFIEHRKNQLQSFVDYVCRHPV-LCRSPVWQHFITCT 114 (393)
Q Consensus 78 ~~Fie~Rr~~L~~fl~rv~~HPv-L~~~~~~~~FL~~~ 114 (393)
+|+++||.+|+.||+.|+++|. ++.|++++.||..+
T Consensus 82 -~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~ 118 (123)
T cd06882 82 -EIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQT 118 (123)
T ss_pred -HHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCC
Confidence 9999999999999999999985 99999999999876
No 79
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.20 E-value=4.9e-12 Score=108.35 Aligned_cols=60 Identities=22% Similarity=0.448 Sum_probs=56.4
Q ss_pred eEecCCCCcccccC----------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 54 VVADQTKKCQTLYK----------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 54 ~v~rry~df~~l~~----------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+|.|||+||++||+ |+|...++++++|||+||.+|+.||+.|+.||.|..++.|..||.-
T Consensus 51 ~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~ppKk~~~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLsp 126 (127)
T cd06878 51 VVTRKLSEFHDLHRKLKECSSWLKKVELPSLSKKWFKSIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLSP 126 (127)
T ss_pred EEEEeHHHHHHHHHHHHHHCCCccccCCCCCCccccccCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcCC
Confidence 79999999999999 5688888889999999999999999999999999999999999963
No 80
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.19 E-value=7.6e-12 Score=108.07 Aligned_cols=60 Identities=22% Similarity=0.418 Sum_probs=56.5
Q ss_pred ceEecCCCCcccccC--------------CccccccCC--ChHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRY--EEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~--~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~ 112 (393)
..|.|||+||.+||. |.|...|.. +++||++||.+|+.||+.|+.||.++.++.++.||+
T Consensus 57 w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~~~~~~~~~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs 132 (133)
T cd06876 57 WVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKISLKYSKTLLVEERRKALEKYLQELLKIPEVCEDEEFRKFLS 132 (133)
T ss_pred EEEEeEhHHHHHHHHHHHHHCcCCCCCCCCccccccCccCCHHHHHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence 479999999999999 889988865 899999999999999999999999999999999996
No 81
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.17 E-value=1.2e-10 Score=105.29 Aligned_cols=88 Identities=32% Similarity=0.577 Sum_probs=75.7
Q ss_pred hhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 231 LGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMK 310 (393)
Q Consensus 231 l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~ 310 (393)
|=+.++.+.+-+..+++. .|.- .+||++..+.+.+++||+.||+++.+||+|||.+|+.|||.+|+
T Consensus 118 fPDii~v~KgA~~KvKE~--------~k~~------~egkm~~~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~ 183 (207)
T cd07670 118 FPDIIHVQKGALTKVKES--------KKHV------EEGKMELQKADGIQDRCNIISFATLAEIHHFHKIRVRDFKSQMQ 183 (207)
T ss_pred CCchHHHhHHHHHHHHHH--------HHHH------HhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 556777777777766663 2222 27999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhHHHHHH
Q psy17920 311 SFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 311 ~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
.||+.||.||++++...+....
T Consensus 184 ~yL~~QI~Fyq~v~~kl~~~l~ 205 (207)
T cd07670 184 HFLQQQIRFFQKVTQKLEEALQ 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998887764
No 82
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=99.16 E-value=1.4e-10 Score=105.27 Aligned_cols=90 Identities=27% Similarity=0.506 Sum_probs=77.4
Q ss_pred hhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 231 LGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMK 310 (393)
Q Consensus 231 l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~ 310 (393)
|-+.++.+.+-+..+++. .|.- .+||++..+++.+++||+.||+.+.+||+|||.+|+.|||++|+
T Consensus 118 fPDIi~v~KgA~~KvkE~--------~k~~------~egkm~~~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~ 183 (210)
T cd07668 118 FPDIIGAHKGAIEKVKES--------DKLV------ATSKITLQDKQNMVKRVSTMSYALQAEMNHFHSNRIYDYNSVIR 183 (210)
T ss_pred CccHHHHHHHHHHHHHHH--------HHHh------hhccchhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777666663 2222 27999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 311 SFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 311 ~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
.||+.||.||++++...++..+..
T Consensus 184 ~yL~eQi~Fyq~v~~kl~~~l~~y 207 (210)
T cd07668 184 LYLEQQVQFYETIAEKLRQALSRF 207 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998887654
No 83
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=99.14 E-value=1.8e-10 Score=104.51 Aligned_cols=88 Identities=27% Similarity=0.523 Sum_probs=75.9
Q ss_pred hhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 231 LGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMK 310 (393)
Q Consensus 231 l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~ 310 (393)
|-+.++.+.+-+..+++. .|.- .+||++..+++.++.||+.||..+.+||+|||.+|+.||+++|+
T Consensus 118 fPDii~v~K~A~~KvkE~--------~k~~------~e~Km~~~~~~~v~~R~~~isya~~AEm~HFh~~r~~d~k~~M~ 183 (207)
T cd07669 118 FPDIIHLQKGAFAKVKES--------QRMS------DEGRMDQDEADGIRKRCRVVGFALQAEMNHFHQRRELDFKQMMQ 183 (207)
T ss_pred CccHHHHHHHHHHHHHHH--------HHhh------HHhhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777766663 2222 27899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhHHHHHH
Q psy17920 311 SFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 311 ~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
.||+.||.||++++...++...
T Consensus 184 ~yL~eQi~Fyq~v~~kle~al~ 205 (207)
T cd07669 184 HYLRQQIIFYQRVSQQLEKTLR 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888764
No 84
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.11 E-value=1.9e-11 Score=100.50 Aligned_cols=60 Identities=25% Similarity=0.411 Sum_probs=52.7
Q ss_pred ceEecCCCCcccccC--------------Ccccccc---CCChHHHHHHHHHHHHHHHHHhcCCCccc-ccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIG---RYEEQFIEHRKNQLQSFVDYVCRHPVLCR-SPVWQHFIT 112 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g---~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~-~~~~~~FL~ 112 (393)
..|.|||+||.|||. |.|.+.| +++++++++|+.+|+.||+.|+.||.+.. |+.+..||+
T Consensus 28 ~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~~~~~~~~~i~~R~~~L~~yL~~l~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 28 WTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGRLNNFSEEFIEKRRRGLERYLQSLLNHPELINESEVVLSFLE 105 (105)
T ss_pred EEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhcccCCcCCHHHHHHHHHHHHHHHHHHHcCHhhhccChHHHHhcC
Confidence 368888888888877 6777765 57999999999999999999999999999 999999985
No 85
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.09 E-value=2.2e-11 Score=103.02 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=49.2
Q ss_pred ceEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
..|.|||+||.|||. |+|.. .|+|+||.+|+.||++|+.||.|+.|+.|+.||+.
T Consensus 50 ~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~------~~~E~Rr~~Le~yL~~Ll~~p~l~~s~~~~~FL~~ 118 (119)
T cd06869 50 IYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK------LPREKLRLSLRQYLRSLLKDPEVAHSSILQEFLTS 118 (119)
T ss_pred eEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch------hHHHHHHHHHHHHHHHHhcChhhhcChHHHHhhCC
Confidence 479999999999998 44443 68999999999999999999999999999999985
No 86
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.05 E-value=2.9e-11 Score=100.00 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=71.8
Q ss_pred ceEEEeeCCccccccccccccchhhhhccc--cceEecCCCCcccccC--------------CccccccC---CChHHHH
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVKSL--VAVVADQTKKCQTLYK--------------REYQKIGR---YEEQFIE 82 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~--~~~v~rry~df~~l~~--------------P~K~~~g~---~~~~Fie 82 (393)
.+.|+|.|+.+.+. ...++..++.-.... ...|.|||+||.+||. |+|...+. .+.++++
T Consensus 3 ~~~v~v~~~~~~~~-~~~~~~~~~i~~~~~~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~~~~~~~~~~ 81 (113)
T PF00787_consen 3 IIQVSVVDPETSGN-KKKTYYIYQIELQDGKESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNSRNLDPEFIE 81 (113)
T ss_dssp EEEEEEEEEEEESS-SSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSSSTTSHHHHH
T ss_pred EEEEEEcCCEEEcC-CCEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHhhhhcccccccCCccccccccccccHHHHH
Confidence 47899999998844 222222222222222 3479999999999999 78887764 8999999
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 83 HRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 83 ~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+|+.+|+.||+.|+.||.+..++.+..||+.
T Consensus 82 ~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~ 112 (113)
T PF00787_consen 82 ERRQALEKYLQSLLSHPELRSSEALKEFLES 112 (113)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcChhhhCchHHHHhcCC
Confidence 9999999999999999999999999999985
No 87
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.03 E-value=1.1e-10 Score=95.30 Aligned_cols=60 Identities=23% Similarity=0.400 Sum_probs=56.4
Q ss_pred ceEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFIT 112 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~ 112 (393)
..|.|||+||.|||+ |+|...|+.+++++++|+.+|+.||+.|+.||.+..++.+..||+
T Consensus 32 ~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~~~~~~~~~~~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~ 105 (106)
T cd06093 32 WTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLFGNLDPEFIEERRKQLEQYLQSLLNHPELRNSEELKEFLE 105 (106)
T ss_pred EEEEeehHHHHHHHHHHHHHCCCCccCCCCCCcccccCCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhC
Confidence 479999999999998 888888888999999999999999999999999999999999986
No 88
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=98.96 E-value=1.7e-07 Score=83.78 Aligned_cols=171 Identities=16% Similarity=0.212 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---h--HHHHHHHHHHHHHHHHHHHHhcCccccccchhH
Q psy17920 159 CSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGIDR---S--HLRDALKKTGDTYNELGKLFEEQPKLDWEPLGD 233 (393)
Q Consensus 159 f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d~---s--~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e 233 (393)
+...++.|....+.+......+.. ....|+..+.++|.+. + .|..++..+|.+...++.....+.+.-...+.+
T Consensus 5 ~~~~~~kl~k~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~ 83 (194)
T cd07307 5 LEKLLKKLIKDTKKLLDSLKELPA-AAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIE 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444332 2345777888888842 1 388999999999999999888887777788999
Q ss_pred HHHHHH-hHHhhhhhHHHHHHHHHH-------HHHHHHHhh-hhccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 234 VLHIYK-GIITSMPDILGLHKDILN-------KKREYEKMT-TENKM--EANRLQEVLKRTDTVSYALLGEINHFHQEQV 302 (393)
Q Consensus 234 ~L~ey~-~ll~s~~~v~~~~~~al~-------k~re~erl~-~e~k~--~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~ 302 (393)
+|..|. +.+..+++....+..+.. ++..+.+-. .++++ .+.+++.++.+++.++..+..+|..|+..+.
T Consensus 84 pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~ 163 (194)
T cd07307 84 PLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRK 163 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999 888888888777665433 332221100 11222 2478999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 303 SQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 303 ~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
.+|...|..|++.|+.||++++..|...
T Consensus 164 ~~~~~~L~~~~~~q~~~~~~~~~~~~~l 191 (194)
T cd07307 164 ELFLSLLLSFIEAQSEFFKEVLKILEQL 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 9999999999999999999999988765
No 89
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=98.89 E-value=9.7e-10 Score=94.04 Aligned_cols=84 Identities=13% Similarity=0.187 Sum_probs=61.4
Q ss_pred eEEEeeCCccccccccccccchhhhhc--cccceEecCCCCcccccC--------------CccccccCCChHHHHHHHH
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVK--SLVAVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKN 86 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~--~~~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~ 86 (393)
++|+|.++...+.+...++ .+...+. .....|.|||+||.+||. |.|.+.|+.+++|||+||.
T Consensus 1 ~~i~Ip~~~~~~~~~~~y~-vY~I~v~~~~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~g~~~~~~ie~Rr~ 79 (127)
T cd06874 1 IKITIPRYVLRGQGKDEHF-EFEVKITVLDETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLFGNKSERVAKERRR 79 (127)
T ss_pred CEEEECCeEEecCCCCcEE-EEEEEEEECCcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceecCCCCHHHHHHHHH
Confidence 3678888776655322211 1111111 112379999999999999 8999999999999999999
Q ss_pred HHHHHHHHHhc-CCCccccccc
Q psy17920 87 QLQSFVDYVCR-HPVLCRSPVW 107 (393)
Q Consensus 87 ~L~~fl~rv~~-HPvL~~~~~~ 107 (393)
+|+.||+.|.. .|.+..|+.+
T Consensus 80 ~Le~yL~~Ll~~~~~~~~~~~~ 101 (127)
T cd06874 80 QLETYLRNFFSVCLKLPACPLY 101 (127)
T ss_pred HHHHHHHHHHHhchhccCCccc
Confidence 99999999886 5777777744
No 90
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=98.85 E-value=7.5e-10 Score=92.37 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=52.9
Q ss_pred ceEecCCCCcccccC--------------CccccccC-CChHHHHHHHHHHHHHHHHHhcCC-Ccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGR-YEEQFIEHRKNQLQSFVDYVCRHP-VLCRSPVWQHFIT 112 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~-~~~~Fie~Rr~~L~~fl~rv~~HP-vL~~~~~~~~FL~ 112 (393)
..|.|||+||.+||. |.|...|+ .+++|+++|+.+|+.||+.|..+| .++.|+.+..||.
T Consensus 32 ~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~~~~~~~~e~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~~ 107 (109)
T cd06883 32 SFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGRSHIKQVAERRKIELNSYLKSLFNASPEVAESDLVYTFFH 107 (109)
T ss_pred EEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCccchhHHHHHHHHHHHHHHHHHHcCCHHHhcCHHHHHhcC
Confidence 478999999999998 67777774 467899999999999999999986 9999999999986
No 91
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=98.73 E-value=6.6e-06 Score=75.94 Aligned_cols=173 Identities=15% Similarity=0.220 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHH
Q psy17920 163 IHGLDSAVKSLVAVVADQTKKCQ------TLYKREYQKIGID-RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235 (393)
Q Consensus 163 l~~L~~~l~~L~~~~~~l~kk~~------~~~~~~~~~lg~d-~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L 235 (393)
+...+.++..|+.....+.++.+ ..+++....++.. .+.++.+|..+|+++..+.+..+-+.+.-...+.++|
T Consensus 20 i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL 99 (219)
T PF06730_consen 20 ITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPL 99 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34455555555555555555432 2345555555553 4458889999999999998876666555556789999
Q ss_pred HHHHhHHhhhhhHHHHH----HHHHHHHHHHHHhhh---hc--cccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 236 HIYKGIITSMPDILGLH----KDILNKKREYEKMTT---EN--KMEA--NRLQEVLKRTDTVSYALLGEINHFHQEQVSQ 304 (393)
Q Consensus 236 ~ey~~ll~s~~~v~~~~----~~al~k~re~erl~~---e~--k~~~--~~ve~~~~~~e~is~~v~~E~~rF~~ek~~D 304 (393)
+.|-..+...++=+... ..-+.+.+.++++.. .+ .+++ .++..+.......+..+..-|+.|+..|..|
T Consensus 100 ~~Y~~~cK~~r~elK~~~~ar~kEikq~~~Leklr~k~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~D 179 (219)
T PF06730_consen 100 SQYGTICKHARDELKKFNKARNKEIKQLKQLEKLRQKNPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEKQKLKD 179 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877755443 333445555555421 11 1333 4555566666666778888899999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 305 INAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 305 fk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
+|.+|.+|+..++.||-|.++.+...++.+.
T Consensus 180 lK~i~sdFv~iEM~fHaKALEv~T~a~q~i~ 210 (219)
T PF06730_consen 180 LKKIFSDFVTIEMVFHAKALEVYTAAYQDIQ 210 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998775
No 92
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=98.63 E-value=1.7e-05 Score=73.10 Aligned_cols=147 Identities=15% Similarity=0.220 Sum_probs=109.9
Q ss_pred HHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH--
Q psy17920 188 YKREYQKIGID---RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-- 262 (393)
Q Consensus 188 ~~~~~~~lg~d---~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-- 262 (393)
++..+..+|.. ...++.++..++.+...++....+....--..+.++|+.|...+..+...+..+......+..+
T Consensus 73 l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~ 152 (229)
T PF03114_consen 73 LADALIELGSEFSDDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARS 152 (229)
T ss_dssp HHHHHHHHHHCTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455542 2237888999998888887655443222234688999999999999988888777654444332
Q ss_pred --HHhhh-hcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 263 --EKMTT-ENKME-ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 263 --erl~~-e~k~~-~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
+++.. .++.. ..+++.++..++.++..+..+|..|...+..-+...|..|+..|..||++++..+....+.|
T Consensus 153 k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l 228 (229)
T PF03114_consen 153 KLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQL 228 (229)
T ss_dssp HHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22211 11111 68899999999999999999999999998888889999999999999999999999998776
No 93
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=98.57 E-value=2.7e-08 Score=86.53 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 77 EEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 77 ~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+++++++||.+||.||+.|..+|.+..++.+..||+.
T Consensus 103 ~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeV 139 (140)
T cd06895 103 SEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEV 139 (140)
T ss_pred CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhcc
Confidence 6899999999999999999999999999999999975
No 94
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.55 E-value=2.7e-05 Score=71.74 Aligned_cols=51 Identities=31% Similarity=0.507 Sum_probs=47.4
Q ss_pred HHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 342 ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 342 ~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
..+++.+..+.+.|++.+.+|+.||+.+|+.||+.+|.+|++.||.||+++
T Consensus 158 e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~ 208 (218)
T cd07596 158 ESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKI 208 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999875
No 95
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=98.52 E-value=3.2e-08 Score=82.70 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=63.3
Q ss_pred EEEeeCCccccccccccccchhhhhcc--ccceEecCCCCcccccC--------------CccccccC-CChHHHHHHHH
Q psy17920 24 SISHFNLEQETESCSRFIHGLDSAVKS--LVAVVADQTKKCQTLYK--------------REYQKIGR-YEEQFIEHRKN 86 (393)
Q Consensus 24 ~i~v~~p~k~~~~~s~f~~~~~~~~~~--~~~~v~rry~df~~l~~--------------P~K~~~g~-~~~~Fie~Rr~ 86 (393)
.|+|-+-+|.-...+.+++.++.--.+ .+..|.|||+||.+||. |.|...|| .++++.|+|+.
T Consensus 3 ~v~v~~~~kr~~~~~~yvY~I~V~~~~~~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~~~~~~~v~e~R~~ 82 (111)
T cd06884 3 RVTVVGFQKRYDPEKYYVYVVEVTRENQASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVGRSNIKSVAEKRKQ 82 (111)
T ss_pred EEEEEEEEEEecCCCeEEEEEEEEEcCCCceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeecCCcchHHHHHHHH
Confidence 456666666544222222222211111 12479999999999988 67877785 46789999999
Q ss_pred HHHHHHHHHhc-CCCcccccccccccc
Q psy17920 87 QLQSFVDYVCR-HPVLCRSPVWQHFIT 112 (393)
Q Consensus 87 ~L~~fl~rv~~-HPvL~~~~~~~~FL~ 112 (393)
+|+.||+.|.. +|.+++|+.+..|+.
T Consensus 83 ~L~~Yl~~Ll~~~~~is~~~~v~~FF~ 109 (111)
T cd06884 83 DIQQFLNSLFKMAEEVSHSDLVYTFFH 109 (111)
T ss_pred HHHHHHHHHHcCCHHHhcChHHHHhcC
Confidence 99999999988 579999999999974
No 96
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=98.36 E-value=0.00022 Score=67.02 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=44.9
Q ss_pred HHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 342 ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 342 ~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
...+..+++|.+.||+.+..|+++|+.+|+.||+.+|..||+.||.+-+.
T Consensus 162 e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~ 211 (224)
T cd07623 162 EAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQ 211 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999999999999999999997654
No 97
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=98.33 E-value=1.6e-07 Score=78.69 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=48.7
Q ss_pred eEecCCCCcccccC------C---------------ccccccCCChHHHHHHHHHHHHHHHHHhcCC-Cccccccccccc
Q psy17920 54 VVADQTKKCQTLYK------R---------------EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHP-VLCRSPVWQHFI 111 (393)
Q Consensus 54 ~v~rry~df~~l~~------P---------------~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HP-vL~~~~~~~~FL 111 (393)
.|.|||+||..||. | ++.+.+..+.+++++||.+|+.||+.+..+| .++.|+.++.|+
T Consensus 30 ~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~~~~~~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff 109 (112)
T cd06890 30 YLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTDVVNDSISLKRLNDLNEYLNELINLPAYIQTSEVVRDFF 109 (112)
T ss_pred EEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccCcchhHHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHc
Confidence 68888888888877 2 2222333578999999999999999999999 999999999998
Q ss_pred c
Q psy17920 112 T 112 (393)
Q Consensus 112 ~ 112 (393)
.
T Consensus 110 ~ 110 (112)
T cd06890 110 A 110 (112)
T ss_pred C
Confidence 6
No 98
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.27 E-value=0.00014 Score=67.13 Aligned_cols=49 Identities=10% Similarity=0.371 Sum_probs=43.2
Q ss_pred HHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 344 RLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 344 ~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
+++..+.+.+.++-.+.+|+.+|+.+|..|||.++..|+..||.||+++
T Consensus 142 ev~~a~~~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~ 190 (200)
T cd07624 142 EVEKLQDKLECANADLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQC 190 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777788999999999999999999999999999999976
No 99
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.26 E-value=0.00014 Score=66.29 Aligned_cols=49 Identities=18% Similarity=0.378 Sum_probs=45.3
Q ss_pred HHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 344 RLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 344 ~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
+++..+.+.+.++-.+.+|+.+|+.++..||+.+|..|...||.||+++
T Consensus 127 ~ve~a~~~~e~f~~~~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~ 175 (185)
T cd07628 127 EVENAKETSDAFNKEVLKEYPNFERIKKQEIKDSLGALADGHIDFYQGL 175 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777889999999999999999999999999999999999999975
No 100
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=98.21 E-value=6.2e-07 Score=75.86 Aligned_cols=88 Identities=10% Similarity=0.136 Sum_probs=57.7
Q ss_pred EEeeCCccccccccccccchhhhhccccc-eEecCCCCcccccC-----------------------CccccccCC-ChH
Q psy17920 25 ISHFNLEQETESCSRFIHGLDSAVKSLVA-VVADQTKKCQTLYK-----------------------REYQKIGRY-EEQ 79 (393)
Q Consensus 25 i~v~~p~k~~~~~s~f~~~~~~~~~~~~~-~v~rry~df~~l~~-----------------------P~K~~~g~~-~~~ 79 (393)
|+|-|-+|.-...+.|++.++...++.+. .|.|||+||.-||. |+|...||- ..+
T Consensus 4 ~~v~~~ekr~~~~k~y~Y~i~V~~~dg~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~g~s~~~~ 83 (119)
T cd06888 4 VKVIDVEKRRAPSKHYVYIINVTWSDGSSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILFRRSHIRD 83 (119)
T ss_pred EEEEEEEEEecCCCcEEEEEEEEEcCCCEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCcccCcchhHH
Confidence 45555555543222233222222222222 57777777766665 566667753 367
Q ss_pred HHHHHHHHHHHHHHHHhcCC-Ccccccccccccc
Q psy17920 80 FIEHRKNQLQSFVDYVCRHP-VLCRSPVWQHFIT 112 (393)
Q Consensus 80 Fie~Rr~~L~~fl~rv~~HP-vL~~~~~~~~FL~ 112 (393)
+.++|+..|+.||+.+.+-| .++.|+.+..|.+
T Consensus 84 ~~e~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~ 117 (119)
T cd06888 84 VAVKRLKPIDEYCKALVRLPPHISQCDEVLRFFE 117 (119)
T ss_pred HHHHHHHHHHHHHHHHHcCCceeecCHHHHHhcC
Confidence 99999999999999988887 8889999999875
No 101
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.11 E-value=0.0025 Score=59.33 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=44.9
Q ss_pred HHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 343 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 343 ~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
.++..++.....+|-.+..||..|..+|+.|||.....|+..|+.||.++
T Consensus 142 ~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~ka 191 (211)
T cd07598 142 SELQKASVDANRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKA 191 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888999999999999999999999999999999999999764
No 102
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=98.07 E-value=1.7e-06 Score=73.06 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=36.4
Q ss_pred CccccccCCChHHHHHHHHHHHHHHHHHh-cCCCcccccccccccccc
Q psy17920 68 REYQKIGRYEEQFIEHRKNQLQSFVDYVC-RHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 68 P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~-~HPvL~~~~~~~~FL~~~ 114 (393)
|.|.+.|+ .++.|+||.+|+.||+.+. .+|.++.|+.++.|+...
T Consensus 71 P~k~~~~~--~~v~e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~ 116 (118)
T cd06887 71 PAPKWFDG--QRAAENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVR 116 (118)
T ss_pred CCCcccCc--chHHHHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcC
Confidence 44444454 4999999999999999985 567999999999999753
No 103
>smart00721 BAR BAR domain.
Probab=98.05 E-value=0.0014 Score=61.40 Aligned_cols=134 Identities=14% Similarity=0.164 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccccccchhH-HHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHhhhh-c----
Q psy17920 200 SHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGD-VLHIYKGIITSMPDILGLHKDILNKKREY----EKMTTE-N---- 269 (393)
Q Consensus 200 s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e-~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl~~e-~---- 269 (393)
+.+..+|..+|.++..+++...+. ..-...+.. ++..+...+..+......+......+..+ +++... +
T Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~ 169 (239)
T smart00721 91 SSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKD 169 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChh
Confidence 348889999999999888755444 212222333 33344455555555544444332222211 111111 1
Q ss_pred -cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 270 -KM--EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 270 -k~--~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
++ ...+++.++..++.++..+..||..|...+..-+...+.+|+..|..||.++...+....+.+
T Consensus 170 ~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l 237 (239)
T smart00721 170 EKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQL 237 (239)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 247889999999999999999999999999888999999999999999999999888876654
No 104
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=97.95 E-value=0.0059 Score=57.24 Aligned_cols=50 Identities=18% Similarity=0.417 Sum_probs=44.8
Q ss_pred HHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 343 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 343 ~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
..++.++.+.+.||=.+..|+.+|+.+|+.||+.++..|+..||.+|+++
T Consensus 177 ~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~ 226 (236)
T PF09325_consen 177 RRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKM 226 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888889999999999999999999999999999999999875
No 105
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=97.86 E-value=0.0084 Score=55.43 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=46.8
Q ss_pred HHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 342 ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 342 ~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
..+++..+.+.+..+-.+.+|+.+|+.++..||+.++..|..-||.||+++
T Consensus 139 ~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~ 189 (201)
T cd07622 139 EEAVKEAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKG 189 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888899999999999999999999999999999999999985
No 106
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.85 E-value=0.007 Score=57.21 Aligned_cols=59 Identities=15% Similarity=0.376 Sum_probs=51.1
Q ss_pred HHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 327 KKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 327 ~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
.+.-.++|.. +++.++++++...-.+.||+..|+..+..||+.++..|...||.||+++
T Consensus 172 rre~~~kLe~-------~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~~ 230 (240)
T cd07667 172 RKEERPKVPT-------DVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEKC 230 (240)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555553 3788888889999999999999999999999999999999999999986
No 107
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=97.81 E-value=0.017 Score=53.84 Aligned_cols=49 Identities=22% Similarity=0.364 Sum_probs=44.0
Q ss_pred HHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 344 RLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 344 ~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
....++++-+-||-.+--|+..|+.+|+.||+.++..|+..||.+++.+
T Consensus 158 ~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ 206 (216)
T cd07627 158 RASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKEL 206 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888899999999999999999999999999999999999865
No 108
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=97.79 E-value=0.0054 Score=57.43 Aligned_cols=143 Identities=10% Similarity=0.186 Sum_probs=101.6
Q ss_pred HHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-HH-
Q psy17920 188 YKREYQKIGID---RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-EY- 262 (393)
Q Consensus 188 ~~~~~~~lg~d---~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e~- 262 (393)
++..+.+.|.+ .+.+..||...|.+..+||+....+...--..|.++|..+. ...++.+.+.++.. +..| ++
T Consensus 69 Lg~~M~~~G~~lg~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l--~~dik~i~k~RKkL-e~rRLd~D 145 (223)
T cd07615 69 LGDCMLRYGRELGEESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQ--DKDLKEIGHHLKKL-EGRRLDFD 145 (223)
T ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHH
Confidence 44444455553 45699999999999999998765554333355777777442 24445554444432 2222 21
Q ss_pred -HHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 263 -EKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 263 -erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
.|- ..++....+++.++.+|+.....+...|.-|-..- .|.-.-|..|++.|++||++++.....+.+.|.
T Consensus 146 ~~K~-r~~k~~~eE~~~A~~kfees~E~a~~~M~n~le~e-~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~ 217 (223)
T cd07615 146 YKKK-RQGKIPDEEIRQAVEKFEESKELAERSMFNFLEND-VEQVSQLSVLIEAALDYHRQSTEILEDLQSKLQ 217 (223)
T ss_pred HHHH-cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 13666689999999999999999999999886653 577888999999999999999999999887776
No 109
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=97.77 E-value=0.018 Score=53.58 Aligned_cols=106 Identities=12% Similarity=0.154 Sum_probs=83.7
Q ss_pred cchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHH----HHHhh-----hhcccc--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 229 EPLGDVLHIYKGIITSMPDILGLHKDILNKKRE----YEKMT-----TENKME--ANRLQEVLKRTDTVSYALLGEINHF 297 (393)
Q Consensus 229 ~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re----~erl~-----~e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF 297 (393)
..+.++|.+|......++..+..|...+-.+.. ++++. .+.|+. +++++.++..++.++..++.|+-.|
T Consensus 90 ~~Vl~Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak~~Ye~lN~~L~~ELP~L 169 (211)
T cd07588 90 DQVLGPLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNLEALKAKKKVDDQKLTKAEEELQQAKKVYEELNTELHEELPAL 169 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 468999999999999998888777654433322 12332 122332 3889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 298 HQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 298 ~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
..-|+.=|...+.+++..|..||..++........-|
T Consensus 170 ~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~ 206 (211)
T cd07588 170 YDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVM 206 (211)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998776665544
No 110
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.74 E-value=0.021 Score=52.82 Aligned_cols=178 Identities=12% Similarity=0.116 Sum_probs=109.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHHhcCccccc
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID---RSHLRDALKKTGDTYNELGKLFEEQPKLDW 228 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d---~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~ 228 (393)
.+..++.++..+++|-...+.+......++.. ...|.....++|.. ...++.+|...|++...+...+..-.++--
T Consensus 7 ~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a-~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~ 85 (200)
T cd07603 7 VEADVSELETRLEKLLKLCNGMVDSGKTYVNA-NSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQ 85 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666655444332 23466677777763 334888899999888887764332222222
Q ss_pred cchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHhhhh--cccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 229 EPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKMTTE--NKME-----ANRLQEVLKRTDTVSYALLGEINHFHQ 299 (393)
Q Consensus 229 ~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl~~e--~k~~-----~~~ve~~~~~~e~is~~v~~E~~rF~~ 299 (393)
..+.++|..++. -|..+++.=....++..++..+ .|.... .|.+ ..++...++-+...+-..-.-++-.+.
T Consensus 86 ~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K~~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~ 165 (200)
T cd07603 86 RTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSKPQEAEEATNILTATRSCFRHTALDYVLQINVLQA 165 (200)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666533 3455554433333332333222 121111 2211 145666666777777666777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 300 EQVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 300 ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
-|..||-+.|..|+..|..|||++...+...
T Consensus 166 kKk~e~le~ll~~~~A~~tff~qG~el~~dl 196 (200)
T cd07603 166 KKRHEILSTLLSYMHAQFTFFHQGYDLLEDL 196 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 9999999999999999999999998887765
No 111
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=97.74 E-value=0.0081 Score=56.40 Aligned_cols=133 Identities=11% Similarity=0.161 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH--HHhhhhccccHHHH
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY--EKMTTENKMEANRL 276 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~--erl~~e~k~~~~~v 276 (393)
.+.++.||...|.++.+||+....+...--..|.++|.... -..++.+.+.++..-.+.=+. .|-. -+|....++
T Consensus 83 ~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l--~~dik~i~k~RKkLe~rRLdyD~~k~k-~~k~~eeEl 159 (223)
T cd07592 83 DSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQ--DKDLKEINHHRKKLEGRRLDYDYKKRK-QGKGPDEEL 159 (223)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCchHHH
Confidence 45699999999999999998766553333345666666432 344555555554432222122 1111 134557899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 277 QEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 277 e~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
+.++.+|+.....+...|..|-.. -.+.-.-|..|++.|++||++++.....+...|.
T Consensus 160 ~~Ae~kfe~s~E~a~~~M~~il~~-e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~ 217 (223)
T cd07592 160 KQAEEKFEESKELAENSMFNLLEN-DVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQ 217 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988763 3588889999999999999999999999887776
No 112
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=97.74 E-value=0.0022 Score=59.94 Aligned_cols=144 Identities=13% Similarity=0.186 Sum_probs=103.2
Q ss_pred HHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH--
Q psy17920 188 YKREYQKIGID---RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-- 262 (393)
Q Consensus 188 ~~~~~~~lg~d---~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-- 262 (393)
++..+.+.|.+ .+.+..||...|.+..+||+....+...--..|.++|..+ +...++.+.+.+++.-.+.=++
T Consensus 69 Lg~~M~~~G~elg~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~--~~~dik~i~k~RKkLe~rRLd~D~ 146 (223)
T cd07613 69 LAEAMLKFGRELGDECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNL--HDKDLREIQHHLKKLEGRRLDFDY 146 (223)
T ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344444442 4569999999999999999876555433335677787776 3445566555554432221121
Q ss_pred HHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 263 EKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 263 erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
.|- ..++....+++.++.+|+.-...+...|.-|-..-. +.-.-|.+|++.|++||.+++.....+.+.|.
T Consensus 147 ~K~-r~~k~~eeElr~A~~kFees~E~a~~~M~n~l~~e~-e~~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07613 147 KKK-RQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDI-EQVSQLSALVQAQLEYHKQATQILQQVTVKLE 217 (223)
T ss_pred HHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121 135667899999999999999999999999877754 66678999999999999999999999887776
No 113
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=97.72 E-value=1.2e-05 Score=66.79 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=45.4
Q ss_pred ceEecCCCCcccccC--------------CccccccCC-ChHHHHHHHHHHHHHHHHHhcCC-Ccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQKIGRY-EEQFIEHRKNQLQSFVDYVCRHP-VLCRSPVWQHFIT 112 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~~~g~~-~~~Fie~Rr~~L~~fl~rv~~HP-vL~~~~~~~~FL~ 112 (393)
..|.|||++|.-||. |.|.+.||- ..+-.|+|+.+|+.||+.+.+-| -++.|+.+..|+.
T Consensus 32 ~~I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~grs~~~~vae~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~ 107 (109)
T cd07289 32 SFVFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLGRTHIKDVAAKRKVELNSYIQSLMNSSTEVAECDLVYTFFH 107 (109)
T ss_pred EEEEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeCCCcchHHHHHHHHHHHHHHHHHHcCChhhhcChHHHHhcc
Confidence 346666666666665 566667763 25789999999999999877766 8888988888864
No 114
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=97.67 E-value=1.8e-05 Score=65.78 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=49.0
Q ss_pred cccccccchhhhhccccceEecCCCCcccccCCccccccCCC-hHHHHHHHHHHHHHHH-HHhcCCCcccccccccccc
Q psy17920 36 SCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGRYE-EQFIEHRKNQLQSFVD-YVCRHPVLCRSPVWQHFIT 112 (393)
Q Consensus 36 ~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~P~K~~~g~~~-~~Fie~Rr~~L~~fl~-rv~~HPvL~~~~~~~~FL~ 112 (393)
+|++|..+++.+...||...+|.+| .|.+.|+-+ .+-.|+|+.+|+.||. -+...|-++.|+.+..|+.
T Consensus 37 rY~eF~~Lh~kLk~~FP~~~lP~LP--------~k~~~g~s~~~~vae~R~~~L~~Yl~~Ll~~~~~Is~s~~v~~FF~ 107 (109)
T cd07290 37 TFEEFQELHNKLRLLFPSSKLPSFP--------SRFVIGRSRGEAVAERRKEELNGYIWHLIHAPPEVAECDLVYTFFH 107 (109)
T ss_pred eHHHHHHHHHHHHHHCccccCCCCC--------CCcccCccccHHHHHHHHHHHHHHHHHHHcCChheecCHHHHHhcc
Confidence 3455555555555555544444444 556667644 6899999999999995 5788889999999999974
No 115
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.65 E-value=0.014 Score=55.47 Aligned_cols=49 Identities=12% Similarity=0.386 Sum_probs=43.4
Q ss_pred HHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 344 RLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 344 ~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
+++....+++..|-++-+||.+|+.+|+.||+.+.-.|+..||..|+++
T Consensus 185 ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~ 233 (243)
T cd07666 185 EIEKLEDKVECANNALKADWERWKQNMQTDLRSAFTDMAENNISYYEEC 233 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667778889999999999999999999999999999999875
No 116
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.65 E-value=0.016 Score=52.98 Aligned_cols=46 Identities=9% Similarity=0.197 Sum_probs=39.9
Q ss_pred HHhhccChh-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 347 EVLKRTDTV-SYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 347 ~~~~r~~~~-s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
...++-..| +-.+.+|+.+||.+|..||+.++.+|..-||.+|++.
T Consensus 131 ~~~~~~~~~~~~~~~~el~rF~~ek~~dl~~~l~~~a~~~~~~a~~~ 177 (187)
T cd07629 131 VAASDDLVISSTIKQKDLPRFQREREADLREILKNYSKYHKDWAKQN 177 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556 5899999999999999999999999999999999874
No 117
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.63 E-value=0.03 Score=52.64 Aligned_cols=106 Identities=13% Similarity=0.222 Sum_probs=84.4
Q ss_pred chhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHhhh-------hcccc--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 230 PLGDVLHIYKGIITSMPDILGLHKDILNKKREY----EKMTT-------ENKME--ANRLQEVLKRTDTVSYALLGEINH 296 (393)
Q Consensus 230 ~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl~~-------e~k~~--~~~ve~~~~~~e~is~~v~~E~~r 296 (393)
.+.++++.|......++..+..|...+..+..+ +++.. ..|+. +++++.++..++.++..++.|+-.
T Consensus 95 ~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~ 174 (225)
T cd07590 95 TFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIKLLEELPK 174 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 579999999999999999888776544333322 22211 13443 278999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 297 FHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 297 F~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
|-.-|+.=|.-.+.++...|..||..+......+...+.
T Consensus 175 l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d 213 (225)
T cd07590 175 FYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLD 213 (225)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999888766665554
No 118
>KOG1259|consensus
Probab=97.54 E-value=4.1e-05 Score=73.92 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=47.8
Q ss_pred eEecCCCCcccccC-------------CccccccCCChHHHHHHHHHHHHHHHHHh-cCCCcccccccccccccc
Q psy17920 54 VVADQTKKCQTLYK-------------REYQKIGRYEEQFIEHRKNQLQSFVDYVC-RHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 54 ~v~rry~df~~l~~-------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~-~HPvL~~~~~~~~FL~~~ 114 (393)
.|-|||+||.-||+ |+|.++|+-++.|+|+||..|+-||+.+. .-|-.. -..+-+||...
T Consensus 42 ~v~~ry~df~~lheklv~e~~i~k~llppkk~ig~~~~s~~e~r~~~leiylq~ll~~f~~~~-pr~la~fl~f~ 115 (490)
T KOG1259|consen 42 LVERRYRDFANLHEKLVGEISISKKLLPPKKLVGNKQPSFLEQRREQLEIYLQELLIYFRTEL-PRALAEFLDFN 115 (490)
T ss_pred eehhhhhHHHHHHHHhhhhheeccccCCchhhcCCCChhHHHHHHHHHHHHHHHHHHHccccC-HHHHHHHhccc
Confidence 69999999999998 99999999999999999999999999653 344221 23456666543
No 119
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=97.52 E-value=0.014 Score=54.41 Aligned_cols=130 Identities=13% Similarity=0.176 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH-------HHhhhhccc
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY-------EKMTTENKM 271 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~-------erl~~e~k~ 271 (393)
.+.+..||...|++..+||.+...-...--..|.++|..+.. -++++...++..-.+.=++ ++...++..
T Consensus 70 dS~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~---~~k~i~k~RKkLe~rRLdyD~~ksk~~kak~~~~~ 146 (215)
T cd07593 70 DSEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA---EMKEYHSARKKLESRRLAYDAALTKSQKAKKEDSR 146 (215)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 456999999999999999986443322223456666666653 3566555544421111111 111222333
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 272 EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 272 ~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
...+++.++.+|+.-...+...|.-|-..- .+.-.-|..|++.|+.||++++.....+..
T Consensus 147 ~eeElr~Ae~kfees~E~a~~~M~~i~~~e-~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~ 206 (215)
T cd07593 147 LEEELRRAKAKYEESSEDVEARMVAIKESE-ADQYRDLTDLLDAELDYHQQSLDVLREVRQ 206 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999886642 578888999999999999999988776654
No 120
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.51 E-value=0.05 Score=50.73 Aligned_cols=176 Identities=14% Similarity=0.198 Sum_probs=108.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccchhHHHHHHHHHHHHHHHHHHHHhcCc
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKI-------GIDRSHLRDALKKTGDTYNELGKLFEEQP 224 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~l-------g~d~s~L~~al~~lg~~~~~i~~~~~~Q~ 224 (393)
++.-++.++.++++|-...+.+......+... ...|.....++ |.|..-+..+|...+.++..+++.+..-.
T Consensus 7 ~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A-~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~ 85 (215)
T cd07601 7 FEEDALQLSSYMNQLLQACKRVYDAQNELKSA-TQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLS 85 (215)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777766666655432 23455544444 55433355688888888888776443322
Q ss_pred cccccchhHHHHHHH-hHHhhhhhHHHHHH-------HHHHHHHHHHHhhhhccc---cHHHHHHHHHHHHHHHHHHHHH
Q psy17920 225 KLDWEPLGDVLHIYK-GIITSMPDILGLHK-------DILNKKREYEKMTTENKM---EANRLQEVLKRTDTVSYALLGE 293 (393)
Q Consensus 225 ~~d~~~l~e~L~ey~-~ll~s~~~v~~~~~-------~al~k~re~erl~~e~k~---~~~~ve~~~~~~e~is~~v~~E 293 (393)
.+-...+..+|..+. .-|..+++.=.... .++.|.-.+.|-....+. ...++...++.|...+-....-
T Consensus 86 ~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~~~l~~~R~~F~~~~ldYv~~ 165 (215)
T cd07601 86 SQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVNDEVYACRKKQHQTAMNYYCA 165 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222234666666665 34555555433322 333333322221101111 1255666677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q psy17920 294 INHFHQEQVSQINAAMKSFLTEQINFYQKDILNKK 328 (393)
Q Consensus 294 ~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~ 328 (393)
++-.+.-|..+|-+.|..|+..|+.|||++.....
T Consensus 166 ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~ 200 (215)
T cd07601 166 LNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFT 200 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999988765
No 121
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=97.49 E-value=0.019 Score=54.60 Aligned_cols=133 Identities=16% Similarity=0.200 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-HH----HHhh-------
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-EY----EKMT------- 266 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e~----erl~------- 266 (393)
.+.+..+|...|.+...||+...++-..--..|.++|..... ..++.+...++. +++.| ++ .|+.
T Consensus 76 ~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le--~dik~i~k~RKk-Le~~RLd~D~~k~r~~ka~k~~~ 152 (244)
T cd07595 76 DSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILE--VEIPNIQKQKKR-LSKLVLDMDSARSRYNAAHKSSG 152 (244)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HhhhhHHHHHHHHHHHhcccccc
Confidence 456999999999999999987666533333457777776653 234444443333 22222 11 1111
Q ss_pred ---hhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 267 ---TENKME--ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 267 ---~e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
..+|++ ..++++++.+++.-...+..+|-.|-.. -.|+-.-|..|++.|.+||.+++.......+.|.
T Consensus 153 ~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~-E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~ 225 (244)
T cd07595 153 GQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAK-EAEIASYLIDLIEAQREYHRTALSVLEAVLPELQ 225 (244)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 135554 5889999999999999999999988554 4689999999999999999999999999988877
No 122
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=97.42 E-value=0.033 Score=53.00 Aligned_cols=182 Identities=15% Similarity=0.224 Sum_probs=112.3
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHH--HHHH---HHHH-HHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHH
Q psy17920 150 FNLEQETESCSRFIHGLDSAVKSLVAV--VADQ---TKKC-QTLYKREYQKIGID---RSHLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 150 ~~~d~~~d~f~~~l~~L~~~l~~L~~~--~~~l---~kk~-~~~~~~~~~~lg~d---~s~L~~al~~lg~~~~~i~~~~ 220 (393)
.+++.++|..+..+..+...+.....- +.+. .++. ...++..+.+.|.+ .+.+..+|...|.+..+|++..
T Consensus 18 ~~le~r~D~~k~~~~~i~k~~~~~lqpnp~~r~ek~~kk~p~~~Lgq~M~e~~~~lg~~s~~g~aL~~~gea~~kla~~~ 97 (246)
T cd07618 18 LQIERRLDTVRSVSHNVHKRLIACFQGQVGTDAEKRHKKLPLTALAQNMQEGSAQLGEESLIGKMLDTCGDAENKLAFEL 97 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 345556666665555554444333210 1111 1111 12233344444443 3459999999999999999765
Q ss_pred hcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-HH---H-Hhh------------hhcccc--HHHHHHHHH
Q psy17920 221 EEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-EY---E-KMT------------TENKME--ANRLQEVLK 281 (393)
Q Consensus 221 ~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e~---e-rl~------------~e~k~~--~~~ve~~~~ 281 (393)
.++-..-...|.++|+.+.. ..++.+...++. +++.+ ++ + |+. ..+|++ .+++++++.
T Consensus 98 ~~~d~~ie~~fl~PL~~~le--~dlk~I~K~Rkk-Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~e~a~~ 174 (246)
T cd07618 98 SQHEVLLEKDILDPLNQLAE--VEIPNIQKQRKQ-LAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKIDMLKEEMDEAGN 174 (246)
T ss_pred HhhHHHHHHHHHHHHHHHHH--hHHHHHHHHHHH-HHhHHhhHHHHHHHHHhccccCccccccccchhhhhHHHHHHHHH
Confidence 44422222357777776654 334454444443 22222 11 1 111 124544 467889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 282 RTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 282 ~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
++|..-...-.+|=.| -.+..++-.-|..|++.|.+||.+.+.......+.+.
T Consensus 175 k~E~~kD~~~~dm~~~-l~~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~ 227 (246)
T cd07618 175 KVEQCKDQLAADMYNF-ASKEGEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQ 227 (246)
T ss_pred HHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888887777788888 4778899999999999999999999999999888766
No 123
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.37 E-value=0.058 Score=51.29 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-H---HH-Hhh-------
Q psy17920 200 SHLRDALKKTGDTY-NELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-E---YE-KMT------- 266 (393)
Q Consensus 200 s~L~~al~~lg~~~-~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e---~e-rl~------- 266 (393)
+.|..+| .+|.++ ..+++...+.-..=...|+++|+.... .-+|+|.+.++. |++.+ + .+ |..
T Consensus 77 S~lg~aL-e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e--~dL~~I~k~rKk-L~k~~LD~D~~K~R~~~a~k~s~ 152 (257)
T cd07620 77 SSIRRVL-EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSE--EDLPEILKNKKQ-FAKLTTDWNSAKSRSPQAAGRSP 152 (257)
T ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--hhHHHHHHHHHH-HHhHHhhHHHHHHHHHHhhcccc
Confidence 5588999 777776 777765544322112356677665543 335555554443 33322 1 11 110
Q ss_pred ----------------hhcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q psy17920 267 ----------------TENK--MEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKK 328 (393)
Q Consensus 267 ----------------~e~k--~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~ 328 (393)
..+| +..++++++..+++.--....++|-.|=. +-.++-+-+..|++.|.+||.+.+....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~~~a~Mynfl~-kE~e~a~~l~~lveaQ~~YHrqsl~~Le 231 (257)
T cd07620 153 RSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQYSADLYHFAT-KEDSYANYFIRLLELQAEYHKNSLEFLD 231 (257)
T ss_pred CCccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245 34589999999999999999999999954 4579999999999999999999999999
Q ss_pred HHHHhhhhh
Q psy17920 329 REYEKMTTE 337 (393)
Q Consensus 329 ~~~~~l~~e 337 (393)
.+.+.|.+.
T Consensus 232 ~~l~~~~~~ 240 (257)
T cd07620 232 KNITELKEN 240 (257)
T ss_pred HHHHHHHHh
Confidence 999888754
No 124
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=97.37 E-value=0.074 Score=49.89 Aligned_cols=143 Identities=13% Similarity=0.226 Sum_probs=98.7
Q ss_pred HHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-HH-
Q psy17920 188 YKREYQKIGID---RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-EY- 262 (393)
Q Consensus 188 ~~~~~~~lg~d---~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e~- 262 (393)
++..+.+.|.+ .+.+..||...|.+..+||+....+...--..|.++|..+.. ..++.+.+.++.. +..| ++
T Consensus 69 Lg~~M~~~G~~lg~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le--~dik~i~k~RKkL-e~rRLdyD 145 (223)
T cd07614 69 LGETMIRYGKELGDESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCD--KDLKEIQHHLKKL-EGRRLDFD 145 (223)
T ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHH
Confidence 34444444443 456999999999999999987655533333456667666541 3344444444432 2222 11
Q ss_pred -HHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 263 -EKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 263 -erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
.|- ..++...+++..+..+|+.....+...|.-|-..= .+.-.-|..|++.|++||++++.........|.
T Consensus 146 ~~K~-r~~k~~eeelr~a~ekFees~E~a~~~M~~il~~e-~e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07614 146 YKKK-RQGKIPDEELRQAMEKFEESKEVAETSMHNLLETD-IEQVSQLSALVDAQLDYHRQAVQILDELAEKLK 217 (223)
T ss_pred HHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 13555568899999999999999999999886553 578889999999999999999999999887776
No 125
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=97.33 E-value=0.12 Score=47.94 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=80.8
Q ss_pred hhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHhh-----hhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 231 LGDVLHIYKGIITSMPDILGLHKDILNKKREY----EKMT-----TENKME--ANRLQEVLKRTDTVSYALLGEINHFHQ 299 (393)
Q Consensus 231 l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl~-----~e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF~~ 299 (393)
+++++..|..+...++..+..|...+..+..+ +++. .+.|+. +++++.++..++.++..++.|+-.|-.
T Consensus 92 vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~~ 171 (211)
T cd07611 92 ALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLWS 171 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999998888776544333322 2331 223332 388999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 300 EQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 300 ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
-|+.=|-..+.+++..|..||..+.........
T Consensus 172 ~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~ 204 (211)
T cd07611 172 RRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYE 204 (211)
T ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876555543
No 126
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.26 E-value=0.14 Score=47.21 Aligned_cols=179 Identities=11% Similarity=0.048 Sum_probs=104.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHHHHhcCcccc
Q psy17920 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI---DRSHLRDALKKTGDTYNELGKLFEEQPKLD 227 (393)
Q Consensus 151 ~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~---d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d 227 (393)
+++..++.+...+++|-...+.+......++.. ...|.....++|. +.+.++.+|...++.+..+.+.+..--++-
T Consensus 6 ~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a-~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~ 84 (200)
T cd07639 6 EVEAEVSELETRLEKLVKLGSGMLEGGRHYCAA-SRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLEAT 84 (200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666655554432 2346666666665 233477888888888877765433211111
Q ss_pred ccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHhhh--hcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 228 WEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKMTT--ENKME-----ANRLQEVLKRTDTVSYALLGEINHFH 298 (393)
Q Consensus 228 ~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl~~--e~k~~-----~~~ve~~~~~~e~is~~v~~E~~rF~ 298 (393)
-..+..+|..+.. -|..+++.-....++..++..+ +|... .+|.. ..+++..+.-|...+-..-.-|+-.+
T Consensus 85 ~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~~~~~k~k~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq 164 (200)
T cd07639 85 QFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHNAETPRRKAQEVEEAAAALLGARATFRDRALDYALQINVIE 164 (200)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235555555532 3455555433333322222221 11110 11111 13455556666666666667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 299 QEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 299 ~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
..|..||-+.|..|+..|..|||++.......
T Consensus 165 ~kKkfefle~ll~~m~a~~tfF~qG~ell~~l 196 (200)
T cd07639 165 DKKKFDILEFMLQLMEAQASFFQQGHEALSAL 196 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998765543
No 127
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=97.25 E-value=0.17 Score=47.00 Aligned_cols=176 Identities=16% Similarity=0.175 Sum_probs=109.3
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hhHHHHHHHHHHHHHHHHHHHH-
Q psy17920 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID---------RSHLRDALKKTGDTYNELGKLF- 220 (393)
Q Consensus 151 ~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d---------~s~L~~al~~lg~~~~~i~~~~- 220 (393)
+.+..++..+..+++|-..-+.+......+... ...|+.....++.+ .-.++.+|+..|+.+..+.+-+
T Consensus 6 ~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a-~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~ 84 (207)
T cd07602 6 EHEAELERTNKAIKELIKECKNLISATKNLSKA-QRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERD 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777766666665442 33466666666531 1237899999999988887633
Q ss_pred --hcCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHhh-h-hcc-cc-----HHHHHHHHHHHHHHHH
Q psy17920 221 --EEQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKMT-T-ENK-ME-----ANRLQEVLKRTDTVSY 288 (393)
Q Consensus 221 --~~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl~-~-e~k-~~-----~~~ve~~~~~~e~is~ 288 (393)
-+|++ ..+..+|..+.. -|+.+++.-....++-.++..+ +|.. . ..| .. ..++...++.+...+-
T Consensus 85 ~L~~q~~---~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~~~~ea~~~l~~~r~~f~~~~l 161 (207)
T cd07602 85 RMLENAE---EQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKENQLQEADAQLDMERRNFHQASL 161 (207)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 33433 335555555543 3455555433333332222222 2211 1 111 11 1455666667777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 289 ALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 289 ~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
..-.-++-.+..|.-+|-+.|..|+..|+.|||++.......
T Consensus 162 ~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~ 203 (207)
T cd07602 162 EYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDF 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 666778889999999999999999999999999998765543
No 128
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=97.25 E-value=0.084 Score=49.96 Aligned_cols=46 Identities=15% Similarity=0.332 Sum_probs=40.5
Q ss_pred HHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17920 344 RLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFY 389 (393)
Q Consensus 344 ~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy 389 (393)
.+..+++.-+.||-.+--|+..|+.+|+.||+.++..||+.||..=
T Consensus 174 ~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~q 219 (234)
T cd07664 174 KVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQ 219 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788899999999999999999999999999999999843
No 129
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=97.24 E-value=0.19 Score=47.55 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=39.7
Q ss_pred HHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy17920 345 LQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINF 388 (393)
Q Consensus 345 ~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~f 388 (393)
++..+++-+.||-.+--|+.+|+.+|+.||+..+..||+.||.-
T Consensus 175 ~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~ 218 (234)
T cd07665 175 VTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHS 218 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788889999999999999999999999999999999864
No 130
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=97.24 E-value=0.00013 Score=62.75 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 81 IEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 81 ie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+..||++||.||+.|..-|..+..+....||+.
T Consensus 102 ~~sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLeV 134 (135)
T cd07296 102 FSSRRKQLEDYLSKLLKMPMYRNYHATMEFIDV 134 (135)
T ss_pred hHHHHHHHHHHHHHHhcChhhcCCHHHHhheec
Confidence 338999999999999999999999999999975
No 131
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=97.20 E-value=0.15 Score=47.34 Aligned_cols=166 Identities=14% Similarity=0.224 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HhccchhHHHHHHHHHHHHHHHHHHHH---hcCccc
Q psy17920 157 ESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK---REYQ----KIGIDRSHLRDALKKTGDTYNELGKLF---EEQPKL 226 (393)
Q Consensus 157 d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~---~~~~----~lg~d~s~L~~al~~lg~~~~~i~~~~---~~Q~~~ 226 (393)
..++.|...|-..+..+.....+|+.. ...++ .+|. .+|.+...++.+|+..+.++.++.+-+ -+|++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~a~~~ls~a-~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~L~~q~~~ 90 (215)
T cd07631 12 AAISNYFNQLFQAMHRIYDAQNELSAA-THLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLAD 90 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777776665555432 12233 3555 234443348889999999888887643 334332
Q ss_pred cccchhHHHHHHHh-HHhhhhhHHHH-------HHHHHHHHHHHHHhhhhccc---cHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 227 DWEPLGDVLHIYKG-IITSMPDILGL-------HKDILNKKREYEKMTTENKM---EANRLQEVLKRTDTVSYALLGEIN 295 (393)
Q Consensus 227 d~~~l~e~L~ey~~-ll~s~~~v~~~-------~~~al~k~re~erl~~e~k~---~~~~ve~~~~~~e~is~~v~~E~~ 295 (393)
.+..+|..+.. -|..+++.=.. +..++.|.-.+-|-+.+.+. ...++...+..+..++-.--.-++
T Consensus 91 ---sl~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~~F~~~aLdYv~qLn 167 (215)
T cd07631 91 ---AMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRKKQHQTMMHYFCALN 167 (215)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544432 34444443222 23333333222111111111 113444456666766666667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy17920 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILN 326 (393)
Q Consensus 296 rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~ 326 (393)
..+..|..+|.+.|.+|+..|+.|||++...
T Consensus 168 ~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~ 198 (215)
T cd07631 168 TLQYKKKIALLEPLLGYMQAQISFFKMGSEN 198 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8999999999999999999999999999983
No 132
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.18 E-value=0.19 Score=46.42 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---hcCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHhh-h-hcccc
Q psy17920 200 SHLRDALKKTGDTYNELGKLF---EEQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKMT-T-ENKME 272 (393)
Q Consensus 200 s~L~~al~~lg~~~~~i~~~~---~~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl~-~-e~k~~ 272 (393)
+.++++|...|+++..+.... -+|++ ..+.++|..++. -|..+++.=....++..++..+ .|.. . ..+.+
T Consensus 57 ~~i~~~L~kF~~~l~ei~~~~~~l~~q~e---~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~kk~~ 133 (200)
T cd07637 57 EMISECLDKFGDSLQEMVNYHMILFDQAQ---RSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRHKPH 133 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChH
Confidence 348889999999888877533 33333 335566665533 3455554433322222222211 1110 0 11111
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 273 -----ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 273 -----~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
..++..+++.+...+-..-..++-.+..|..+|-+.|..|+..|..|||++...-...
T Consensus 134 ~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~ 196 (200)
T cd07637 134 EVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHEL 196 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 2567777777888887777889999999999999999999999999999998765543
No 133
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=97.14 E-value=0.11 Score=48.89 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-HHH----Hhh---hhc-
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-EYE----KMT---TEN- 269 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e~e----rl~---~e~- 269 (393)
.+.+..||...|++..+||+....+...--..|.++|..+.. ..++.+.+.++. |+..| ++. |+. .+.
T Consensus 88 ~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~--~dik~i~k~RKk-Le~rRLd~D~~k~r~~kAk~~~~ 164 (229)
T cd07594 88 GTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLE--GDMKTISKERKL-LENKRLDLDACKTRVKKAKSAEA 164 (229)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCccc
Confidence 356999999999999999987655533333457777776654 234444444433 22222 111 111 111
Q ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHh
Q psy17920 270 -KMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 270 -k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~ 333 (393)
.....+++.++.+|+.-.+.+..=|.-+-..- .+.-.-|.+|++.|+.||.+++.....+...
T Consensus 165 ~~~~e~elr~Ae~kF~~~~E~a~~~M~~i~~~~-~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 228 (229)
T cd07594 165 IEQAEQDLRVAQSEFDRQAEITKLLLEGISSTH-ANHLRCLRDFVEAQMTYYAQCYQYMDDLQRQ 228 (229)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12348889999999998887777676665532 4677789999999999999999887766543
No 134
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=97.11 E-value=0.24 Score=46.26 Aligned_cols=147 Identities=13% Similarity=0.075 Sum_probs=89.2
Q ss_pred HHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhH-Hhhhh-hHHHHHHHHHHHH
Q psy17920 187 LYKREYQKIGID-----RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGI-ITSMP-DILGLHKDILNKK 259 (393)
Q Consensus 187 ~~~~~~~~lg~d-----~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~l-l~s~~-~v~~~~~~al~k~ 259 (393)
.|+....++|.. ...++.+|...+.+...++.......++-...+..+|..+..- |..++ +.=.....+...+
T Consensus 41 ~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~y 120 (215)
T cd07604 41 QFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDY 120 (215)
T ss_pred HHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 466667777772 2248899999999999888765443333333455555555443 44443 3221111111111
Q ss_pred ---H-HHHHhhh-hcc------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy17920 260 ---R-EYEKMTT-ENK------------MEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 322 (393)
Q Consensus 260 ---r-e~erl~~-e~k------------~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk 322 (393)
. ..++.+. +++ ....+++..++.|...+-...--++-.+.-|..+|-..|..|...|..|||+
T Consensus 121 e~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~ 200 (215)
T cd07604 121 ETKASKIEKEKKQLAKEAGMIRTEITGAEIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQD 200 (215)
T ss_pred HHHHHHHHhccchhhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1111110 111 1135566666666666655556677788899999999999999999999999
Q ss_pred HHHhHHHHHHh
Q psy17920 323 DILNKKREYEK 333 (393)
Q Consensus 323 ~a~~~~~~~~~ 333 (393)
+...-...-+-
T Consensus 201 G~~ll~~l~p~ 211 (215)
T cd07604 201 GLKVIEHFRPY 211 (215)
T ss_pred HHHHHHHHHhh
Confidence 99887766544
No 135
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=97.07 E-value=0.23 Score=45.67 Aligned_cols=97 Identities=15% Similarity=0.224 Sum_probs=76.0
Q ss_pred cchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 229 EPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAA 308 (393)
Q Consensus 229 ~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~ 308 (393)
..+..++..+..++..++.++..|...+-.+...+.....+.-...+++.++..++.++..++.|+-+|..-+..=+...
T Consensus 88 ~~V~~Pl~~~~~~~~~~~k~I~KR~~KllDYdr~~~~~~k~~k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l~~~ 167 (195)
T cd07589 88 KLVIEPLSSLLKLFSGPQKLIQKRYDKLLDYERYKEKKERGGKVDEELEEAANQYEALNAQLKEELPKFNQLTAQLLETC 167 (195)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhccHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45888999999999988888888776543333221111112234588999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHH
Q psy17920 309 MKSFLTEQINFYQKDIL 325 (393)
Q Consensus 309 l~~yl~~qi~~~qk~a~ 325 (393)
+.+|+..|..+|.....
T Consensus 168 ~~s~~~~Q~~~~~~~~~ 184 (195)
T cd07589 168 LKSFVELQRDLYDTLLK 184 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999877654
No 136
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.07 E-value=0.25 Score=45.63 Aligned_cols=174 Identities=14% Similarity=0.173 Sum_probs=96.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccchhHHHHHHHHHHHHHHHHHHH---HhcCccc
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR---EYQKIGIDRSHLRDALKKTGDTYNELGKL---FEEQPKL 226 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~---~~~~lg~d~s~L~~al~~lg~~~~~i~~~---~~~Q~~~ 226 (393)
+.-++.++..+.+|-...+.+......++.. ...|.. +|...+.+..-++.+|+..++++..+.+. +-+|++
T Consensus 8 E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a-~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~L~~q~~- 85 (200)
T cd07638 8 EGDVAELELKLDKLVKLCIGMIDAGKAFCQA-NKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTILFDQAQ- 85 (200)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3344445555555544444444444333321 123444 33333333334777888888888777753 333433
Q ss_pred cccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHH-HHHhhh--hcccc-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 227 DWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKRE-YEKMTT--ENKME-----ANRLQEVLKRTDTVSYALLGEINHF 297 (393)
Q Consensus 227 d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re-~erl~~--e~k~~-----~~~ve~~~~~~e~is~~v~~E~~rF 297 (393)
..+..+|..+.. -|..+++.-....++-.++-. +.|... ..|.. ..++...+..+...+-..-.-|+-.
T Consensus 86 --~~l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~~k~k~~e~eEa~~~l~~~r~~F~~~~ldYv~~ln~v 163 (200)
T cd07638 86 --RSIKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQVQRNKQHEVEEATNILTATRKCFRHIALDYVLQINVL 163 (200)
T ss_pred --HHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235555555532 334444432222222111111 122110 11111 1355666677777776677778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 298 HQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 298 ~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
+..|..+|-+.|..|+..|+.|||++.......
T Consensus 164 q~kKkfe~le~ll~~m~a~~tff~qG~el~~d~ 196 (200)
T cd07638 164 QSKRRSEILKSMLSFMYAHLTFFHQGYDLFSEL 196 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 999999999999999999999999998765543
No 137
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=97.04 E-value=0.27 Score=45.67 Aligned_cols=104 Identities=10% Similarity=0.125 Sum_probs=81.4
Q ss_pred hhHHHHHHHhHHhhhhhHHHHHHHHHHHHHH----HHHhh-----hhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 231 LGDVLHIYKGIITSMPDILGLHKDILNKKRE----YEKMT-----TENKME--ANRLQEVLKRTDTVSYALLGEINHFHQ 299 (393)
Q Consensus 231 l~e~L~ey~~ll~s~~~v~~~~~~al~k~re----~erl~-----~e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF~~ 299 (393)
++++|..|......++..+..|...+-.+.. ++++. .+.|+. +++++.++..++.++..++.|+-.+-.
T Consensus 92 vL~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~~ 171 (211)
T cd07612 92 ALRTMESYMAQFPDVKERVAKRGRKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINRELREELPILYD 171 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999998888888776554433321 22332 123333 388999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 300 EQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 300 ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
-|+.=|--.+.+++..|..||..+.........-|
T Consensus 172 ~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~ 206 (211)
T cd07612 172 SRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVM 206 (211)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988665554433
No 138
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=97.03 E-value=0.21 Score=44.12 Aligned_cols=51 Identities=18% Similarity=0.386 Sum_probs=47.7
Q ss_pred HHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 342 ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 342 ~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
.+++..++.+-+..+.-+..+|+.|+..+..+|...|..|+..|+.||+.+
T Consensus 134 ~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~~~~~ 184 (194)
T cd07307 134 EEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEAQSEFFKEV 184 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH
Confidence 567888999999999999999999999999999999999999999999864
No 139
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.03 E-value=0.3 Score=46.04 Aligned_cols=69 Identities=9% Similarity=0.237 Sum_probs=53.9
Q ss_pred HHHhHHHHHHhhhhhccCCHHH--------------HHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy17920 323 DILNKKREYEKMTTENKMEANR--------------LQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINF 388 (393)
Q Consensus 323 ~a~~~~~~~~~l~~e~k~~~~~--------------~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~f 388 (393)
.+..|.....+|...|++.+.. .+..+.+.+.||..+.-|+..|+.++..||+..++.|+..||.+
T Consensus 137 ~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~ 216 (230)
T cd07625 137 NTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEY 216 (230)
T ss_pred HHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555554422 23356788899999999999999999999999999999999998
Q ss_pred hhh
Q psy17920 389 YQK 391 (393)
Q Consensus 389 y~~ 391 (393)
-++
T Consensus 217 erk 219 (230)
T cd07625 217 ERK 219 (230)
T ss_pred HHH
Confidence 755
No 140
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=97.02 E-value=0.071 Score=49.83 Aligned_cols=131 Identities=11% Similarity=0.072 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQE 278 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~ 278 (393)
.+.+..||...|.+..+|++.-..+-..--..|.++|..+.. +.++.+.+.++..-.+.=++.-.+...+-...++..
T Consensus 88 ~s~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~--~dlk~i~k~RKkLe~rRLd~D~~K~r~~kae~elr~ 165 (220)
T cd07617 88 GTPYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLE--GDWKTISKERRLLQNRRLDLDACKARLKKAEHELRV 165 (220)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 456999999999999999986544322222346666665542 134444444443221111111000001112478889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 279 VLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 279 ~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
++..|+.-.+....=|.-+...- .+--.-|.+|++.|.+||.+++........
T Consensus 166 A~~kf~~~~E~a~~~M~~il~~~-~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~ 218 (220)
T cd07617 166 AQTEFDRQAEVTRLLLEGISSTH-VNHLRCLHEFVEAQATYYAQCYRHMLDLQK 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999887776655555554432 245567889999999999999987766543
No 141
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=96.97 E-value=0.34 Score=45.56 Aligned_cols=107 Identities=11% Similarity=0.213 Sum_probs=82.2
Q ss_pred cchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHH----HHHhhh-----hcccc--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 229 EPLGDVLHIYKGIITSMPDILGLHKDILNKKRE----YEKMTT-----ENKME--ANRLQEVLKRTDTVSYALLGEINHF 297 (393)
Q Consensus 229 ~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re----~erl~~-----e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF 297 (393)
..+.+++.+|..++..++..+..|...+-.+.. ++++.. +.|+. +++++.++..++.++..++.|+-+|
T Consensus 95 ~~V~~Pl~~~~~~~~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l 174 (224)
T cd07591 95 QTVLDPIGRFNSYFPEINEAIKKRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQLKTELPQL 174 (224)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 357889999999999999999887765433322 223311 12222 3788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 298 HQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 298 ~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
-.-|..=|-..+.++...|..|+-............+.
T Consensus 175 ~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~ 212 (224)
T cd07591 175 VDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLD 212 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999888776655554444
No 142
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.96 E-value=0.24 Score=47.22 Aligned_cols=182 Identities=14% Similarity=0.143 Sum_probs=103.4
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH----HHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHH
Q psy17920 150 FNLEQETESCSRFIHGLDSAVKSLVAV--VADQTKKC----QTLYKREYQKIGID---RSHLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 150 ~~~d~~~d~f~~~l~~L~~~l~~L~~~--~~~l~kk~----~~~~~~~~~~lg~d---~s~L~~al~~lg~~~~~i~~~~ 220 (393)
.+++.++|..+..+..+...+.....- +.+.-++. ...++..+.+.|.+ .+.|..+|...|.+..+||+..
T Consensus 18 ~~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~L~q~M~~~g~elg~~s~lg~aL~~~gea~~kla~a~ 97 (248)
T cd07619 18 LQVEKRLELVKQVSHSTHKKLTACLQGQQGVDADKRSKKLPLTTLAQCMVEGAAVLGDDSLLGKMLKLCGETEDKLAQEL 97 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 345556666555555444444333221 12211111 11233344444443 3569999999999999999866
Q ss_pred hcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-HH---H-Hhhhh------------cccc----HHHHHHH
Q psy17920 221 EEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-EY---E-KMTTE------------NKME----ANRLQEV 279 (393)
Q Consensus 221 ~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e~---e-rl~~e------------~k~~----~~~ve~~ 279 (393)
..+-..--..|.++|+.+.. ..++.+.+.++. +++.| ++ + |+... ++.. ..+++++
T Consensus 98 ~~~d~~i~~~fl~PL~~~le--~dlk~I~k~RK~-Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~e~E~a 174 (248)
T cd07619 98 ILFELQIERDVVEPLYVLAE--VEIPNIQKQRKH-LAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALREEMEEA 174 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHH-HHhhHhhHHHHHHHHHhccccccccccccCCCCccHHHHHHHHHH
Confidence 55433333457777776654 234444444333 22222 11 1 22111 1221 1566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 280 LKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 280 ~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
...++..-...-.+|=.|-. +..|+-+-|..|++.|++||.+.+.......+.+.
T Consensus 175 e~~~e~~kd~~~~~m~~~l~-~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~ 229 (248)
T cd07619 175 ANRMEICRDQLSADMYSFVA-KEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIK 229 (248)
T ss_pred HHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666554445556666633 45677888999999999999999999998887765
No 143
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=96.93 E-value=0.12 Score=48.77 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH----Hhh---hhc-c
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYE----KMT---TEN-K 270 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~e----rl~---~e~-k 270 (393)
.|.+..||...|.+..+||+........--..|.++|..+.. +.++.+.+.++..-.+.=++. |+. .+. +
T Consensus 88 ~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le--~dik~i~k~RKkLe~rRLdyD~~K~r~~kAk~~~~~ 165 (229)
T cd07616 88 GTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIE--GDYKTITKERKLLQNKRLDLDAAKTRLKKAKVAEAR 165 (229)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence 456999999999999999986553222111256667766653 244555444443211111111 111 111 1
Q ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 271 -MEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 271 -~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
....++..++.+|+...+.+..=|..+.. ...++-.-|.+|++.|.+||.+++........
T Consensus 166 ~~~e~elr~ae~efees~E~a~~~m~~i~~-~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~~ 227 (229)
T cd07616 166 AAAEQELRITQSEFDRQAEITRLLLEGISS-THAHHLRCLNDFVEAQMTYYAQCYQYMLDLQK 227 (229)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12477778999999888877766666652 24578889999999999999999987766543
No 144
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.85 E-value=0.39 Score=44.42 Aligned_cols=172 Identities=10% Similarity=0.127 Sum_probs=96.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhHHH----HHHHHHHHHHHHHHHHH---hcC
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID--RSHLR----DALKKTGDTYNELGKLF---EEQ 223 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d--~s~L~----~al~~lg~~~~~i~~~~---~~Q 223 (393)
+.-++.++..+.+|-...+.+......+.. ....|+....++|.. ...+. .+|...+.++..++..+ -+|
T Consensus 7 E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~-a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~q 85 (202)
T cd07606 7 EGSADELRDRSLKLYKGCRKYRDALGEAYD-GDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEVLRSQ 85 (202)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444444443333322 122455556666552 11122 46888888888876533 334
Q ss_pred ccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHhh---hhcccc-----HHHHHHHHHHHHHHHHHHHHH
Q psy17920 224 PKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKMT---TENKME-----ANRLQEVLKRTDTVSYALLGE 293 (393)
Q Consensus 224 ~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl~---~e~k~~-----~~~ve~~~~~~e~is~~v~~E 293 (393)
.+. .+..+|..++. -|..+++.=....++...+..+ .|.. ...|.. ..++...+..+...+-..-.-
T Consensus 86 ~~~---~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~~l~~~R~~F~~~~ldyv~~ 162 (202)
T cd07606 86 VEH---MLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEEDLGTTRSAFETARFDLMNR 162 (202)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 35556666543 3444444322222222222221 1111 011111 255666677777777666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q psy17920 294 INHFHQEQVSQINAAMKSFLTEQINFYQKDILNKK 328 (393)
Q Consensus 294 ~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~ 328 (393)
++..+.-|..+|-+.|..|+..|+.|||++.....
T Consensus 163 ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~ 197 (202)
T cd07606 163 LHAADARKRVEFLERLSGSMDAHLAFFKSGYELLR 197 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999987644
No 145
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.83 E-value=0.28 Score=46.76 Aligned_cols=220 Identities=12% Similarity=0.135 Sum_probs=114.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCccccccchh
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLG 232 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~ 232 (393)
+.....+........+.|..+..+..++.. ....+.+--...+.|...+..+|..+|..-..+.... ....++..+-
T Consensus 14 ~~~p~~~~~~~~~~r~~I~~l~~~~~~l~~-l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~--~~~~~~~~l~ 90 (246)
T cd07597 14 VLLPPDFQEQWANSRERIRRLLESWTKLRV-LAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWA--GDSDTWGDIN 90 (246)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcc--CCCccHHHHH
Confidence 334456666677778888888887777643 3344555555555555556666666665432211100 0111222222
Q ss_pred HHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 233 DVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSF 312 (393)
Q Consensus 233 e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~y 312 (393)
+.|..-.+......+....+..+.. ..-++.++. +-.+...++.=++|.++--..+.-...+.+
T Consensus 91 ~~l~~~s~~~~~~s~~~~~~a~~~~---------------~~vlE~Lk~-~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri 154 (246)
T cd07597 91 EGLSSLSKHFQLLSDLSEDEARAEE---------------DGVLEKLKL-QLDLLVSLRDLFERHEKLSLNNIQRLLKRI 154 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------hhhhHHHHH-HHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 2322222222222222211111000 001111111 222222333333333333333333333333
Q ss_pred HHHHHHHhHHHH--HhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy17920 313 LTEQINFYQKDI--LNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQ 390 (393)
Q Consensus 313 l~~qi~~~qk~a--~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~ 390 (393)
-....+...-.+ ..|-...+++...-.-....+.....|...+-+++..|+..||...- .....++.|...|+.||.
T Consensus 155 ~~~~~kl~~l~~~~~~~~~e~ekl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~~ 233 (246)
T cd07597 155 ELNKKKLESLRAKPDVKGAEVDKLEASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-LLTSILQEFVKDEIQYHS 233 (246)
T ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 333332222112 35666777777666555555666666899999999999999999998 999999999999999998
Q ss_pred hc
Q psy17920 391 KS 392 (393)
Q Consensus 391 ~~ 392 (393)
.+
T Consensus 234 ~l 235 (246)
T cd07597 234 EL 235 (246)
T ss_pred HH
Confidence 64
No 146
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=96.80 E-value=0.44 Score=44.22 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=106.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c-----hhHHHHHHHHHHHHHHHHHH---H
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI----D-----RSHLRDALKKTGDTYNELGK---L 219 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~----d-----~s~L~~al~~lg~~~~~i~~---~ 219 (393)
.+..+|...++++.|-..-+.+......+... ...|+....+++. + .-.+..+|...++++.++.+ +
T Consensus 7 ~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a-~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~ 85 (207)
T cd07636 7 HEAELDKTNKFIKELIKDGKSLIAALKNLSSA-KRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTR 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777766665443 2346666666663 1 11277888888888888775 3
Q ss_pred HhcCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHhh-h--hcccc-----HHHHHHHHHHHHHHHHH
Q psy17920 220 FEEQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKMT-T--ENKME-----ANRLQEVLKRTDTVSYA 289 (393)
Q Consensus 220 ~~~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl~-~--e~k~~-----~~~ve~~~~~~e~is~~ 289 (393)
+-+|++. .+..+|..+.. -|+.+++.-....+.-+++..+ +|.. + .+|.. ...++..++-|..++-.
T Consensus 86 L~~qa~~---~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k~K~~~~eEA~~~L~~~r~~F~~~sLd 162 (207)
T cd07636 86 MIENASE---VLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSKKKESQLHEADSQVDLVRQHFYEVSLE 162 (207)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344432 34555555533 3455555433333322222222 2221 1 12222 13444445566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy17920 290 LLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKR 329 (393)
Q Consensus 290 v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~ 329 (393)
.---|+..+..|..+|.+.|.+|+..+..|||++-.....
T Consensus 163 YV~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d 202 (207)
T cd07636 163 YVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKD 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 6667888999999999999999999999999999876544
No 147
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=96.76 E-value=0.41 Score=44.52 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=74.9
Q ss_pred cchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHH----HHH-hhhhc--------ccc--HHHHHHHHHHHHHHHHHHHHH
Q psy17920 229 EPLGDVLHIYKGIITSMPDILGLHKDILNKKRE----YEK-MTTEN--------KME--ANRLQEVLKRTDTVSYALLGE 293 (393)
Q Consensus 229 ~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re----~er-l~~e~--------k~~--~~~ve~~~~~~e~is~~v~~E 293 (393)
..+..++.+|..++..++..+..|...+-.+.. +++ +...+ ++. +.+++.++..++.++..++.|
T Consensus 96 ~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~e 175 (216)
T cd07599 96 ERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSE 175 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999988887765433322 223 21111 111 378899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy17920 294 INHFHQEQVSQINAAMKSFLTEQINFYQKDIL 325 (393)
Q Consensus 294 ~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~ 325 (393)
+-.|-.-+..=+..++..|...|..+|..+-.
T Consensus 176 LP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~ 207 (216)
T cd07599 176 LPKLLALADEFLPPLFKSFYYIQLNIYYTLHE 207 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988999999999999999887654
No 148
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.76 E-value=0.13 Score=48.90 Aligned_cols=129 Identities=12% Similarity=0.107 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH----Hh---hhhccc
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYE----KM---TTENKM 271 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~e----rl---~~e~k~ 271 (393)
.+.|+.||...|.++.+||+.-.+|-..=...|.++|..+.. ..++.+...|+..-.+.=+.. ++ ....+-
T Consensus 102 ~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~--~d~k~i~k~RKkle~~RLd~D~~K~~~~ka~~~~k~ 179 (242)
T cd07600 102 EDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLN--TSFQKAHKARKKVEDKRLQLDTARAELKSAEPAEKQ 179 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 567999999999999999986555422222345555554432 134444433333211111111 11 111111
Q ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy17920 272 --EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREY 331 (393)
Q Consensus 272 --~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~ 331 (393)
...+++.++.+|+.....+..-|..+-.. .++-+.|..|++.|..||++++.......
T Consensus 180 ~~~~~e~E~aEdef~~a~E~a~~~M~~il~~--~e~i~~L~~fv~AQl~Yh~~~~e~L~~l~ 239 (242)
T cd07600 180 EAARVEVETAEDEFVSATEEAVELMKEVLDN--PEPLQLLKELVKAQLAYHKTAAELLEELL 239 (242)
T ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13778889999998888888888888444 68999999999999999999998776654
No 149
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=96.56 E-value=0.64 Score=43.00 Aligned_cols=173 Identities=14% Similarity=0.166 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH----hccchhHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q psy17920 157 ESCSRFIHGLDSAVKSLVAVVADQTKK--CQTLYKREYQK----IGIDRSHLRDALKKTGDTYNELGKLFEEQPKLDWEP 230 (393)
Q Consensus 157 d~f~~~l~~L~~~l~~L~~~~~~l~kk--~~~~~~~~~~~----lg~d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~ 230 (393)
.....|++.|-.++..+...-+++.-. .......+|.+ ||.+...++.+|...++.+..+.+.+..-..+--..
T Consensus 12 ~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~s 91 (215)
T cd07632 12 GTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADT 91 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777776666544444321 11122334543 444444588899999988888876443322222123
Q ss_pred hhHHHHHHHh-HHhhhhhHHHH-------HHHHHHHHHHHHHhhhhccccH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy17920 231 LGDVLHIYKG-IITSMPDILGL-------HKDILNKKREYEKMTTENKMEA-------NRLQEVLKRTDTVSYALLGEIN 295 (393)
Q Consensus 231 l~e~L~ey~~-ll~s~~~v~~~-------~~~al~k~re~erl~~e~k~~~-------~~ve~~~~~~e~is~~v~~E~~ 295 (393)
+..+|..++. -|..+++.-.. +..++.|.-.+-| .|..+ .++...++.+-.++-.--.-|+
T Consensus 92 l~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~Knaqlsk----kK~~E~~eae~~~~l~~sRr~F~~~ALdYV~qiN 167 (215)
T cd07632 92 MVLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLPK----KRENEKVKAEVAKEVAYSRRKQHLSSLQYYCALN 167 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCc----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444432 23334333222 3334444332211 12111 1244444445554444445677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHh
Q psy17920 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEK 333 (393)
Q Consensus 296 rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~ 333 (393)
-.+..|.-+|-+.|..|+..|+.|||++..--.+-.+.
T Consensus 168 ~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~~~~~~~ 205 (215)
T cd07632 168 ALQYRKRVAMLEPMLGYTHGQINFFKKGAELFSKKLDS 205 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999998876655443
No 150
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=96.26 E-value=0.98 Score=41.92 Aligned_cols=174 Identities=17% Similarity=0.204 Sum_probs=98.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chh-HHHHHHHHHHHHHHHHHHHHh--
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI--------DRS-HLRDALKKTGDTYNELGKLFE-- 221 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~--------d~s-~L~~al~~lg~~~~~i~~~~~-- 221 (393)
+..+|.-.++++.|-..-+.+......+... ...|+....+++. |.. -++..|+..+.....+.+-..
T Consensus 8 e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a-~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L 86 (207)
T cd07635 8 EAELERTNRFIKELLKDGKNLIAATKSLSAA-QRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIM 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777766666666655555432 2345555666553 111 155777777777777665332
Q ss_pred -cCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HH---hhhhcccc-----HHHHHHHHHHHHHHHHHH
Q psy17920 222 -EQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EK---MTTENKME-----ANRLQEVLKRTDTVSYAL 290 (393)
Q Consensus 222 -~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-er---l~~e~k~~-----~~~ve~~~~~~e~is~~v 290 (393)
.|++ ..+..+|..+.. -|+.+++.-......-+++..+ +| ++...+-. ...+...++.+...+-..
T Consensus 87 ~~~~~---~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~EA~~~l~~~r~~F~~~sLdY 163 (207)
T cd07635 87 ALNVT---ETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEPQLQEADVQVEQNRQHFYELSLEY 163 (207)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2322 224445544432 2344444322222222222211 22 11111111 134444566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Q psy17920 291 LGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKRE 330 (393)
Q Consensus 291 ~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~ 330 (393)
-.-|+..+..|..+|.+.|..|+..|+.|||++.......
T Consensus 164 v~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~ 203 (207)
T cd07635 164 VCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDF 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 6678889999999999999999999999999998765543
No 151
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=96.20 E-value=1 Score=41.71 Aligned_cols=172 Identities=13% Similarity=0.136 Sum_probs=103.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------hh--HHHHHHHHHHHHHHHHHHHH---h
Q psy17920 154 QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID-------RS--HLRDALKKTGDTYNELGKLF---E 221 (393)
Q Consensus 154 ~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d-------~s--~L~~al~~lg~~~~~i~~~~---~ 221 (393)
...+.-+++++.|-...+.+......+... ...|+....+++.. .+ .++.++...+..+..+.+.. -
T Consensus 9 ~~l~~t~~~ik~liK~c~~li~A~k~~~~a-~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~ 87 (207)
T cd07634 9 IELERTNKFIKELIKDGSLLIGALRNLSMA-VQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLI 87 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777776666666665443 33466666666641 11 37788888888877776533 2
Q ss_pred cCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHhh-h-hcc-cc-----HHHHHHHHHHHHHHHHHHH
Q psy17920 222 EQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKMT-T-ENK-ME-----ANRLQEVLKRTDTVSYALL 291 (393)
Q Consensus 222 ~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl~-~-e~k-~~-----~~~ve~~~~~~e~is~~v~ 291 (393)
+|++ ..+..+|..+.. -|..+++.-....++..++..+ +|.. . ..+ .. ..+++..++-|...+-...
T Consensus 88 ~~~~---~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~aleK~l~l~~~kk~~~~~ea~~~l~~~R~~F~~~~ldYv 164 (207)
T cd07634 88 QNAN---DVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYSILEKHLNLSAKKKESHLQRADTQIDREHQNFYEASLEYV 164 (207)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 234455555432 3445554433333332222221 2211 0 111 11 2455555666777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy17920 292 GEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKR 329 (393)
Q Consensus 292 ~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~ 329 (393)
--|+-.+..|..||-+.|..|+..|..|||++...-..
T Consensus 165 ~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~d 202 (207)
T cd07634 165 FKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQE 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 67888999999999999999999999999999876544
No 152
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.93 E-value=1.4 Score=40.74 Aligned_cols=172 Identities=13% Similarity=0.161 Sum_probs=94.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hhHHHHHHHHHHHHHHHHHH---HHh
Q psy17920 154 QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID---------RSHLRDALKKTGDTYNELGK---LFE 221 (393)
Q Consensus 154 ~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d---------~s~L~~al~~lg~~~~~i~~---~~~ 221 (393)
..++....+++.|-..-+.|...+..++.. ...|+....+++.+ +-.++++|...|+.+..+-+ ++-
T Consensus 9 ~ele~~~~~IkkliK~~~~li~a~K~~s~A-~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~ 87 (207)
T cd07633 9 QELERTNKFIKDVIKDGNALISAIKEYSSA-VQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMMV 87 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666655555432 23455555555542 11288888888888877765 333
Q ss_pred cCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHH-HHh-hhhccccHHHHHHH-------HHHHHHHHHHHH
Q psy17920 222 EQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREY-EKM-TTENKMEANRLQEV-------LKRTDTVSYALL 291 (393)
Q Consensus 222 ~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~-erl-~~e~k~~~~~ve~~-------~~~~e~is~~v~ 291 (393)
+|++. .+..+|..++. -|+.+++.-....+.-+++-.+ +|. ....|--..+++++ ++-|-.++=.--
T Consensus 88 d~aq~---s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~k~a~~s~k~K~~e~eEA~~~L~~~r~~F~~~aLdYV 164 (207)
T cd07633 88 QNASD---LLIKPLENFRKEQIGFTKERKKKFEKDSEKFYSLLDRHVNLSSKKKESQLQEADLQVDKERQNFYESSLEYV 164 (207)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44442 24445544432 2344444322222211111111 221 12122222344444 333433332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy17920 292 GEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKR 329 (393)
Q Consensus 292 ~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~ 329 (393)
--|+-.+..|.-||-+.|.+|+..+.-|||++..-...
T Consensus 165 ~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~d 202 (207)
T cd07633 165 YQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQD 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34677889999999999999999999999999875543
No 153
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.90 E-value=1.4 Score=40.61 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=38.9
Q ss_pred HHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q psy17920 345 LQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQIN 387 (393)
Q Consensus 345 ~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~ 387 (393)
.+....+-+.||-.+--|+..|+.+||.||+..+-.|++.||+
T Consensus 141 ~~~a~~~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~ 183 (198)
T cd07630 141 KKKAETEFEEISSLAKKELERFHRQRVLELQSALVCYAESQIK 183 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778899999999999999999999999999999999885
No 154
>KOG1118|consensus
Probab=95.46 E-value=0.73 Score=44.83 Aligned_cols=145 Identities=14% Similarity=0.231 Sum_probs=84.3
Q ss_pred HHHHHHHhcc---chhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHH-
Q psy17920 188 YKREYQKIGI---DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYE- 263 (393)
Q Consensus 188 ~~~~~~~lg~---d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~e- 263 (393)
++..+.++|. +.+++..+|..+|.++..+|++-..-..+--..|.++|..|. +.-++++-+.+++.-.+.-..+
T Consensus 88 Lg~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~--~~elK~i~hh~KKLEgRRldyD~ 165 (366)
T KOG1118|consen 88 LGDVMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQ--LKELKDIQHHRKKLEGRRLDYDY 165 (366)
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh--HHHHHHHHHHHHHhhhhhhHHHH
Confidence 4445555555 245588899999999999887533221111134666666552 3345555444433222211211
Q ss_pred HhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 264 KMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 264 rl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
+....||+..+++-.+..++|.-.+.+..-|=.+...- .|=-+-|..+++.|+.||++.+.-....-.++-
T Consensus 166 kkkk~~K~~dEelrqA~eKfEESkE~aE~sM~nlle~d-~eqvsqL~~Li~aqLdfhrqs~~iL~~l~~~l~ 236 (366)
T KOG1118|consen 166 KKKKQGKIKDEELRQALEKFEESKELAEDSMFNLLEND-VEQVSQLSALIQAQLDFHRQSTQILQELQMKLF 236 (366)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11236788888888888888776655444333332222 233345678999999999999887766655443
No 155
>KOG3771|consensus
Probab=95.28 E-value=4 Score=41.99 Aligned_cols=108 Identities=16% Similarity=0.201 Sum_probs=78.2
Q ss_pred cchhHHHHHHHhHHhhhhhHHHHHHHH----------HHHHHHHHHhhhhcccc--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 229 EPLGDVLHIYKGIITSMPDILGLHKDI----------LNKKREYEKMTTENKME--ANRLQEVLKRTDTVSYALLGEINH 296 (393)
Q Consensus 229 ~~l~e~L~ey~~ll~s~~~v~~~~~~a----------l~k~re~erl~~e~k~~--~~~ve~~~~~~e~is~~v~~E~~r 296 (393)
..+..+|..|.+....++..+..|... +++++..++ ..+-|+. +.+++.+++.||..+..++.|+-.
T Consensus 108 d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~-kd~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~ 186 (460)
T KOG3771|consen 108 DQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKK-KDEAKLAKAEEELEKAQQVFEELNNELLEELPA 186 (460)
T ss_pred HhhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHhcC-CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447889999999888887776654333 223322211 1112222 388999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH---HHHHhhhhh
Q psy17920 297 FHQEQVSQINAAMKSFLTEQINFYQKDILNKK---REYEKMTTE 337 (393)
Q Consensus 297 F~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~---~~~~~l~~e 337 (393)
+-..|+.-|...++.+...|.-||..++.--. ....+|.+.
T Consensus 187 L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~dq 230 (460)
T KOG3771|consen 187 LYSSRVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLFDQ 230 (460)
T ss_pred HHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999944443 444444433
No 156
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=95.03 E-value=3.2 Score=39.17 Aligned_cols=164 Identities=16% Similarity=0.230 Sum_probs=99.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhcc-c-hhHHHHHHHHHHHHHHHHHHHHhc
Q psy17920 151 NLEQETESCSRFIHGLDSAVKSLVAVVADQTKKC------QTLYKREYQKIGI-D-RSHLRDALKKTGDTYNELGKLFEE 222 (393)
Q Consensus 151 ~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~------~~~~~~~~~~lg~-d-~s~L~~al~~lg~~~~~i~~~~~~ 222 (393)
+++..++.|. .+.....+|.+++..+.... ...++.-|..+|. | .+.|+.++...|++...++.-
T Consensus 34 eL~~kle~l~----~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~~l~~~f~~~~~~~~~~~~~--- 106 (229)
T PF06456_consen 34 ELDAKLELLR----DTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKSPALGEEFSANGEAQRSLAKQ--- 106 (229)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CCGHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH---
Confidence 3455555544 34444444444444443321 1235555666666 3 334889999999988887742
Q ss_pred CccccccchhHHHHHHHhHH-----hhhhhHHHHHH----------HHHHHHHHHHHh-hh-----hccc--cHHHHHHH
Q psy17920 223 QPKLDWEPLGDVLHIYKGII-----TSMPDILGLHK----------DILNKKREYEKM-TT-----ENKM--EANRLQEV 279 (393)
Q Consensus 223 Q~~~d~~~l~e~L~ey~~ll-----~s~~~v~~~~~----------~al~k~re~erl-~~-----e~k~--~~~~ve~~ 279 (393)
-..+..+|+-+..-+ .+++|+...-+ +++.+++++..- .. ..+. .+..+...
T Consensus 107 -----~~~L~~~l~~~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY~ay~~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~ 181 (229)
T PF06456_consen 107 -----GETLLKALKRFLSDLNTFRNKAIPDTLLTIKKYEDARFEYDAYRLWLKEMSDELDPDTAKQEPKFRVAQGNYQEA 181 (229)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSTSSTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhcccchHHHHHHHHHHH
Confidence 233444444443333 23455443322 234445444311 00 0111 12667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy17920 280 LKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILN 326 (393)
Q Consensus 280 ~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~ 326 (393)
+.+|+.+...+..=|+-.+..|+.+|..-|..|......||.+++..
T Consensus 182 k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~~ 228 (229)
T PF06456_consen 182 KERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQA 228 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999988754
No 157
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=94.93 E-value=0.011 Score=49.98 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=47.0
Q ss_pred ccccccchhhhhccccc---------eEecCCCCcccccCCccccccCC--ChHHHHHHHHHHHHHHHHHhcCC-Ccccc
Q psy17920 37 CSRFIHGLDSAVKSLVA---------VVADQTKKCQTLYKREYQKIGRY--EEQFIEHRKNQLQSFVDYVCRHP-VLCRS 104 (393)
Q Consensus 37 ~s~f~~~~~~~~~~~~~---------~v~rry~df~~l~~P~K~~~g~~--~~~Fie~Rr~~L~~fl~rv~~HP-vL~~~ 104 (393)
|++|..+...+...||. +++|.+|+..|+ |+. .-+--+.|+..|+.|++.+.+-| .++.|
T Consensus 40 y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~--------~~~~~~~~~a~~R~~~L~~Y~~~Ll~lp~~Is~~ 111 (121)
T cd06889 40 LEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSL--------GSLKGSTSRSLARLKLLETYCQELLRLDEKVSRS 111 (121)
T ss_pred HHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCccc--------CCcccccchHHHHHHHHHHHHHHHHcCCcceecC
Confidence 45666666666665552 456666655555 442 22335799999999999888777 88899
Q ss_pred cccccccc
Q psy17920 105 PVWQHFIT 112 (393)
Q Consensus 105 ~~~~~FL~ 112 (393)
+.+..|..
T Consensus 112 ~~V~~FF~ 119 (121)
T cd06889 112 PEVIQFFA 119 (121)
T ss_pred HHHHHhcC
Confidence 99888874
No 158
>KOG2273|consensus
Probab=94.70 E-value=6.7 Score=41.22 Aligned_cols=43 Identities=12% Similarity=0.353 Sum_probs=38.0
Q ss_pred hccC--hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 350 KRTD--TVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 350 ~r~~--~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
++.+ .++-.+.+|+.+|...|..||+.++..|+..++.+++.+
T Consensus 443 ~~~~~~~i~~~~~~e~~~f~~~~~~d~~~~~~~~~d~~i~~~~~~ 487 (503)
T KOG2273|consen 443 KELELDEISERIRAELERFEESRRQDFKESLKKYADLHVEYAEQI 487 (503)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 677788899999999999999999999999999999864
No 159
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=94.44 E-value=4.4 Score=37.96 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=38.9
Q ss_pred HHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy17920 346 QEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINF 388 (393)
Q Consensus 346 ~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~f 388 (393)
....++-+.||-.+--|+..|+.+||.||+..+-.|++.+|+-
T Consensus 160 ~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~~E~~ik~ 202 (218)
T cd07663 160 QECCQKFEKLSESAKQELISFKRRRVAAFRKNLIEMTELEIKH 202 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3377888999999999999999999999999999999998864
No 160
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=94.24 E-value=2.1 Score=41.79 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHH-hhhhhHHHHHHHHHHHHHH--HHHhhhhc--ccc-
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGII-TSMPDILGLHKDILNKKRE--YEKMTTEN--KME- 272 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll-~s~~~v~~~~~~al~k~re--~erl~~e~--k~~- 272 (393)
.+.|+.+|...+.++.+|++..-+| |-....+.++.....+ ..+..+...|++.-.+.=+ +-|....+ +..
T Consensus 147 ~~~L~~aL~~~S~~~~~I~~aRL~q---D~~I~~~Fn~~l~~~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~~~~pek 223 (289)
T PF10455_consen 147 EDPLSKALLKYSSAYEKIAQARLEQ---DQLIQKEFNKKLQTTLNTDFKKANKARKKVENSRLQFDAARANLKNKAKPEK 223 (289)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccc
Confidence 4569999999999999999865555 2222222222222111 2233332333322111111 11222222 111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 273 ----ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 273 ----~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
..+++.++++|-..+.....+|..+=.. .++-..|+.++..|..||++++.........|
T Consensus 224 ee~~r~~lE~aEDeFv~aTeeAv~~Mk~vl~~--~e~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l 287 (289)
T PF10455_consen 224 EEQLRVELEQAEDEFVSATEEAVEVMKEVLDN--SEPLRLLKELVKAQLEYHKKAAEALSELLKSL 287 (289)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1568999999998888899999887554 46779999999999999999999887776544
No 161
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=94.21 E-value=0.065 Score=43.54 Aligned_cols=82 Identities=9% Similarity=0.040 Sum_probs=56.4
Q ss_pred CceEEEe--eCCcccc--ccccccccchhhhhccccceEecCCCCcccccCCccccccCCChHHHHHHHHHHHHHHHHHh
Q psy17920 21 HILSISH--FNLEQET--ESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGRYEEQFIEHRKNQLQSFVDYVC 96 (393)
Q Consensus 21 ~~~~i~v--~~p~k~~--~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~ 96 (393)
..|-|+| +|++..- ..+.+|..+++.+-..+|..++|.||+. ...|+.+. =++|.+.|+.|+..+.
T Consensus 13 ~lY~i~V~~sd~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~--------~~~~~~~~--~~~R~~~L~~Yl~~Ll 82 (101)
T cd06896 13 NLYLVQVTQSCNLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHW--------WHLPFTDS--DHKRVRDLNHYLEQLL 82 (101)
T ss_pred eEEEEEEEEeCCCcceeeecHHHHHHHHHHHHHHCccccccCCCCc--------cccCcccH--HHHHHHHHHHHHHHHH
Confidence 3455555 3432222 2456777788888888898888888765 33454444 3789999999999877
Q ss_pred cCC-Ccccccccccccc
Q psy17920 97 RHP-VLCRSPVWQHFIT 112 (393)
Q Consensus 97 ~HP-vL~~~~~~~~FL~ 112 (393)
.-| -++.|+.+..|..
T Consensus 83 ~~~~eVa~sd~v~sFF~ 99 (101)
T cd06896 83 SGSREVANSDCVLSFFL 99 (101)
T ss_pred ccCHHHhcchHHHHHhh
Confidence 666 7888888777764
No 162
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=93.86 E-value=5.7 Score=37.14 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=37.5
Q ss_pred HHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q psy17920 346 QEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQIN 387 (393)
Q Consensus 346 ~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~ 387 (393)
+...++-+-||-.+--|+..|+.+||.||+..+-.|++.+|.
T Consensus 160 ~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lk 201 (218)
T cd07662 160 QLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELK 201 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888999999999999999999999999999998875
No 163
>KOG3784|consensus
Probab=92.52 E-value=0.072 Score=53.28 Aligned_cols=60 Identities=22% Similarity=0.365 Sum_probs=49.5
Q ss_pred eEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 54 VVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 54 ~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
-+.+||+.+.-|++ |+|... .+++.=++.||++|+.|++.+++||+|..+..++.||...
T Consensus 29 ~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f-~L~~~~~~~rr~~leqylqa~~q~~~l~~s~~~~~fL~~~ 102 (407)
T KOG3784|consen 29 HGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLF-KLTPQQLDSRRRGLEQYLQAVCQDPVLARSELVQKFLMRA 102 (407)
T ss_pred EEEEehHHHHhHHHHHHHHhhcccCCCCCccccc-CCChhhhHHHHHHHHHHHHHHhcCccccchhhhhHHHHhc
Confidence 36666776666665 566544 4688899999999999999999999999999999999865
No 164
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=92.41 E-value=9 Score=35.41 Aligned_cols=137 Identities=12% Similarity=0.186 Sum_probs=87.1
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHh-----hhhhHHHHHHHHHHH---
Q psy17920 187 LYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIIT-----SMPDILGLHKDILNK--- 258 (393)
Q Consensus 187 ~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~-----s~~~v~~~~~~al~k--- 258 (393)
.++..|..+|.-.++|++++...|++...++.-- +.+...|+-+..-++ +++|++..-+....-
T Consensus 41 ~Lg~~f~~l~~k~p~l~~af~~~aet~k~l~kng--------~~Ll~al~~f~s~l~T~~~kai~DT~lTI~~ye~aR~E 112 (201)
T cd07660 41 ALGDAFADLSQKSPELQEEFTYNAETQKLLCKNG--------ETLLGALNFFVSSLNTLVNKTMEDTLMTVKQYESARIE 112 (201)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhHh
Confidence 3455555555545568888888888877766321 134444444433332 345554443322111
Q ss_pred ----HHHHHHhhhhccc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy17920 259 ----KREYEKMTTENKM---------EANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDIL 325 (393)
Q Consensus 259 ----~re~erl~~e~k~---------~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~ 325 (393)
..+.+.+...+.. .+..+...+.+|+.+-+.|..-|+-++..|+.+|..-|.-|......||..+..
T Consensus 113 Ydayr~D~ee~~~~~~~~~~l~r~~~~q~~~~~~k~kf~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~ 192 (201)
T cd07660 113 YDAYRNDLEALNLGPRDAATSARLEEAQRRFQAHKDKYEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQK 192 (201)
T ss_pred HHHHhccHHHcccCCCccchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 1122322222221 125677778889999999999999999999999999999999999999988877
Q ss_pred hHHHHH
Q psy17920 326 NKKREY 331 (393)
Q Consensus 326 ~~~~~~ 331 (393)
......
T Consensus 193 ~L~~~~ 198 (201)
T cd07660 193 QLEQTL 198 (201)
T ss_pred HHHHHH
Confidence 765543
No 165
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=92.04 E-value=11 Score=35.43 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=38.7
Q ss_pred HHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q psy17920 346 QEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQIN 387 (393)
Q Consensus 346 ~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~ 387 (393)
+...++-+.||-.+-.|+..|+.+||.||+..+-.|++.||+
T Consensus 161 ~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk~~lve~aE~~ik 202 (219)
T cd07621 161 QEACEKFESMSESAKQELLDFKTRRVAAFRKNLVELAELEIK 202 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788889999999999999999999999999999999886
No 166
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=91.33 E-value=12 Score=34.64 Aligned_cols=135 Identities=10% Similarity=0.129 Sum_probs=86.4
Q ss_pred HHHHHHHhccchhHH-HHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHh-----hhhhHHHHHH--------
Q psy17920 188 YKREYQKIGIDRSHL-RDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIIT-----SMPDILGLHK-------- 253 (393)
Q Consensus 188 ~~~~~~~lg~d~s~L-~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~-----s~~~v~~~~~-------- 253 (393)
++.-+..+|.-.+.+ ++++...|++...++.- . +.+..+|+-+..-+. +++|....-+
T Consensus 42 lG~~f~~l~~~~~~~a~~~f~~~~~a~r~~~k~----g----~~ll~~l~~~~~~l~T~~~kai~DT~lTI~~ye~aR~E 113 (203)
T cd00011 42 LGDAFADLSQKDPELAGEEFGYNAEAQKLLCKN----G----ETLLGAVNFFVSSINTLVTKAIEDTLLTVKQYEAARLE 113 (203)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh----H----HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHh
Confidence 444455555534445 57888888888777631 1 223334444333332 3455544332
Q ss_pred --HHHHHHHHHHHhhh---h-c----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy17920 254 --DILNKKREYEKMTT---E-N----KMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKD 323 (393)
Q Consensus 254 --~al~k~re~erl~~---e-~----k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~ 323 (393)
+++.+++++..-.. + | +..+..+...+.+|+.+...+..-|+-....|+.+|...|..|......||.+.
T Consensus 114 Y~a~~l~~ke~~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~ 193 (203)
T cd00011 114 YDAYRLDLKELSLEPRDDTAGTRGRLRSAQATFQEHRDKFEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGN 193 (203)
T ss_pred HHHHHHHHHHhcccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23444444411000 0 0 012367888899999999999999999999999999999999999999999988
Q ss_pred HHhHHHH
Q psy17920 324 ILNKKRE 330 (393)
Q Consensus 324 a~~~~~~ 330 (393)
+......
T Consensus 194 ~~~l~~~ 200 (203)
T cd00011 194 QKVLEQT 200 (203)
T ss_pred HHHHHHH
Confidence 8776544
No 167
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=91.19 E-value=13 Score=34.70 Aligned_cols=175 Identities=14% Similarity=0.161 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHHHHHHHHhc---Cccccc-cc
Q psy17920 160 SRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-----DRSHLRDALKKTGDTYNELGKLFEE---QPKLDW-EP 230 (393)
Q Consensus 160 ~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-----d~s~L~~al~~lg~~~~~i~~~~~~---Q~~~d~-~~ 230 (393)
..-+.+|-..++.+.......+.. ...|.....+||. +...++.+|..+|.....+..++.. +.++.. .|
T Consensus 15 ~~~l~~~kk~~k~~~~sG~~yv~~-~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~p 93 (215)
T cd07642 15 RTVLYKMKKSVKAIHTSGLAHVEN-EEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFP 93 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334556666666666655554432 3356777777887 3445889999999888887765433 222221 23
Q ss_pred hhHHHHHHHhHH-hhhhhHHHH----HHHHHHHHHHHHH--hhhhccc----c-H---HHHHHHHHHHHHHHHHHHHHHH
Q psy17920 231 LGDVLHIYKGII-TSMPDILGL----HKDILNKKREYEK--MTTENKM----E-A---NRLQEVLKRTDTVSYALLGEIN 295 (393)
Q Consensus 231 l~e~L~ey~~ll-~s~~~v~~~----~~~al~k~re~er--l~~e~k~----~-~---~~ve~~~~~~e~is~~v~~E~~ 295 (393)
+...|++-++-+ +-++..|.. ...++.|.....+ .+..|-+ + . +++...+..+....-.-.-=++
T Consensus 94 l~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in 173 (215)
T cd07642 94 LDSLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIEKEKKEHAKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVN 173 (215)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222222 122222221 2223322222111 1111111 0 1 1222222222222111111355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 296 HFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 296 rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
-.+.-|..|+-..+..|...|..|+|++.......-+.+.
T Consensus 174 ~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~~ 213 (215)
T cd07642 174 EIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSIE 213 (215)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5777888999999999999999999999988877766543
No 168
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=89.76 E-value=15 Score=33.19 Aligned_cols=51 Identities=16% Similarity=0.403 Sum_probs=45.8
Q ss_pred HHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 342 ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 342 ~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
..+++..+..-+.+.--+..||..|...+..-|...+..|+..|..||+++
T Consensus 167 ~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~ 217 (229)
T PF03114_consen 167 EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQL 217 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888889999999999999999888899999999999999874
No 169
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=88.70 E-value=21 Score=33.39 Aligned_cols=49 Identities=8% Similarity=0.178 Sum_probs=35.6
Q ss_pred HHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 343 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 343 ~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
+++...++--.-.++=...-+|-.+.-+-.+|...|-.|...|..||++
T Consensus 152 ~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~ 200 (215)
T cd07604 152 EEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQD 200 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444544555677788889999999999999999999975
No 170
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=88.61 E-value=0.43 Score=40.65 Aligned_cols=35 Identities=6% Similarity=0.187 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccc
Q psy17920 79 QFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC 113 (393)
Q Consensus 79 ~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~ 113 (393)
+=+..|++.||.|||++..-|+-+..+....||+.
T Consensus 95 ~~~~sr~kqLE~YLn~LL~~~~YRn~~atleFLeV 129 (130)
T cd07297 95 RRTASKPKYLENYLNNLLENSFYRNYHAMMEFLAV 129 (130)
T ss_pred hhhhhHHHHHHHHHHHHhcchhhcCChhheeeeec
Confidence 34677999999999999999999999988889875
No 171
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=88.23 E-value=0.57 Score=40.56 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=26.9
Q ss_pred cccccccchhhhhc--cccceEecCCCCcccc
Q psy17920 36 SCSRFIHGLDSAVK--SLVAVVADQTKKCQTL 65 (393)
Q Consensus 36 ~~s~f~~~~~~~~~--~~~~~v~rry~df~~l 65 (393)
+||||+.+++.+.. ++|++|+||.|++.-+
T Consensus 40 RysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~ 71 (141)
T cd07291 40 QHEDFIWLHDALIETEDYAGLIIPPAPPKPDF 71 (141)
T ss_pred ccHHHHHHHHHHhccccCCeEEECCCCCCccc
Confidence 58999999999997 6899999999999654
No 172
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=88.00 E-value=23 Score=33.02 Aligned_cols=39 Identities=13% Similarity=0.298 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 294 INHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 294 ~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
++-.+..|..|+-..|.+|...|..|+|++...-...-+
T Consensus 172 in~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~p 210 (215)
T cd07641 172 VNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQ 210 (215)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555788899999999999999999999999887665544
No 173
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=87.90 E-value=0.37 Score=41.00 Aligned_cols=45 Identities=4% Similarity=-0.026 Sum_probs=34.9
Q ss_pred ceEEEeeCCc--------cccccccccccchhhhhcccc--ceEecCCCCccccc
Q psy17920 22 ILSISHFNLE--------QETESCSRFIHGLDSAVKSLV--AVVADQTKKCQTLY 66 (393)
Q Consensus 22 ~~~i~v~~p~--------k~~~~~s~f~~~~~~~~~~~~--~~v~rry~df~~l~ 66 (393)
.|.|.+..+- .+..+||||+.+++.+...|| ++++|++|++.++.
T Consensus 20 ~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~ 74 (124)
T cd07282 20 AYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVG 74 (124)
T ss_pred EEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCcccc
Confidence 4777776432 223479999999999999876 68999999999865
No 174
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=87.28 E-value=0.41 Score=41.68 Aligned_cols=35 Identities=9% Similarity=-0.063 Sum_probs=30.2
Q ss_pred ccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 33 ETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 33 ~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
+..+||||+.+++.++..+|++++|+.|++...+.
T Consensus 66 VrRRysdF~~L~~~L~~~~~~~iVPplP~k~~~~~ 100 (140)
T cd06891 66 VRRTYEEFQKLFKYLNGANPETFVPALPLPSTSYG 100 (140)
T ss_pred eeeeHHHHHHHHHHHHHHCCCcEeCCCCCccccCC
Confidence 33468999999999999999999999999986544
No 175
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=86.54 E-value=27 Score=32.30 Aligned_cols=170 Identities=12% Similarity=0.114 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHHHHHHHHhcCcc----ccccchh
Q psy17920 162 FIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-----DRSHLRDALKKTGDTYNELGKLFEEQPK----LDWEPLG 232 (393)
Q Consensus 162 ~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-----d~s~L~~al~~lg~~~~~i~~~~~~Q~~----~d~~~l~ 232 (393)
-+.+|-..++.+.......+.. ...|......||+ +.++++.++-.++-....++.++..--+ .-..|+-
T Consensus 17 ~L~k~kk~vkai~~sg~~hv~n-e~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpld 95 (213)
T cd07640 17 SLQRIKKIVKAIHNSGLNHVEN-EEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLD 95 (213)
T ss_pred HHHHHHHHHHHHHHhhHHHHhH-HHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchH
Confidence 3455555555555544443332 2346666777887 3456888888888888888776544222 2223443
Q ss_pred HHHHHHHhHHh-hhhhHH----HHHHHHHHHHHHHHHhhh--hccc--cHHH-HH--HHHHHHHHHHHH-HHHHHHHHHH
Q psy17920 233 DVLHIYKGIIT-SMPDIL----GLHKDILNKKREYEKMTT--ENKM--EANR-LQ--EVLKRTDTVSYA-LLGEINHFHQ 299 (393)
Q Consensus 233 e~L~ey~~ll~-s~~~v~----~~~~~al~k~re~erl~~--e~k~--~~~~-ve--~~~~~~e~is~~-v~~E~~rF~~ 299 (393)
-.|++-.+-.. -.+..| .....++.|.....|... .|-+ +-.+ .+ +.+++|=....| -.--++-.+.
T Consensus 96 sflK~dlr~~K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~~e~eEaae~l~~eRr~Fql~acdYllkin~iq~ 175 (213)
T cd07640 96 SLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLEKERREKQKQHGLIRLDMTDTAEDMQRERRNFQLHMCEYLLKAQESQM 175 (213)
T ss_pred HHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHhccccccchhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34433222111 111111 122223333333222111 2222 1111 11 112222111111 1122455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 300 EQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 300 ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
-|..|+-..|.+|...|..|+|++...-....+
T Consensus 176 KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~p 208 (213)
T cd07640 176 KQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGP 208 (213)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999999876655443
No 176
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=86.27 E-value=0.49 Score=39.83 Aligned_cols=32 Identities=6% Similarity=-0.133 Sum_probs=29.3
Q ss_pred ccccccccchhhhhccccceEecCCCCccccc
Q psy17920 35 ESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 35 ~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
.+||||+.+++.+...+|++++|++|.+.|+.
T Consensus 41 RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~ 72 (116)
T cd07283 41 RRYQDFDWLRNKLEESQPTHLIPPLPEKFVVK 72 (116)
T ss_pred CCccHHHHHHHHHHHhCCCcccCCCCCccccc
Confidence 47999999999999999999999999998874
No 177
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=83.80 E-value=0.72 Score=38.70 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=34.3
Q ss_pred eEEEee--CCc------cccccccccccchhhhhccccceEecCCCCcccc
Q psy17920 23 LSISHF--NLE------QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTL 65 (393)
Q Consensus 23 ~~i~v~--~p~------k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l 65 (393)
|.|.|. .|. .+..+||||..+.+.+...+|+.++|++|.+.++
T Consensus 22 Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 72 (118)
T cd06863 22 YLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRL 72 (118)
T ss_pred EEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCcccc
Confidence 667764 332 2334799999999999999999999999999876
No 178
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=83.79 E-value=1.1 Score=38.92 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=26.1
Q ss_pred cccccccchhhhhc--cccceEecCCCCcccc
Q psy17920 36 SCSRFIHGLDSAVK--SLVAVVADQTKKCQTL 65 (393)
Q Consensus 36 ~~s~f~~~~~~~~~--~~~~~v~rry~df~~l 65 (393)
+||||+.+++.+.. .+|++|+||.|.+--+
T Consensus 40 RysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~ 71 (141)
T cd07292 40 QHEEFIWLHDSFVENEDYAGYIIPPAPPRPDF 71 (141)
T ss_pred ccHhHHHHHHHHhhcccCCcEEECCCCCCccc
Confidence 58999999999996 4899999999988544
No 179
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=83.39 E-value=0.51 Score=39.73 Aligned_cols=32 Identities=3% Similarity=-0.040 Sum_probs=28.9
Q ss_pred ccccccccchhhhhccccceEecCCCCccccc
Q psy17920 35 ESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 35 ~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
.+||||+.+.+.+...+|++++|++|++.|+.
T Consensus 41 RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~ 72 (116)
T cd07284 41 RRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMK 72 (116)
T ss_pred CCchHHHHHHHHHHHHCCCceeCCCCCcchhh
Confidence 47999999999999999999999999988763
No 180
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=83.24 E-value=0.58 Score=40.06 Aligned_cols=53 Identities=9% Similarity=-0.014 Sum_probs=37.8
Q ss_pred cccccCCCceEEEeeCC-ccccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 14 IGLKVMDHILSISHFNL-EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 14 ~~~~~~~~~~~i~v~~p-~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
.+++. --.|.|..... -.+..+||||+.++..+...+|++++|++|.+..+..
T Consensus 15 ~G~~~-Yv~Y~I~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~g~ 68 (127)
T cd07286 15 KGMKS-YISYKLVPSHTGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQATGR 68 (127)
T ss_pred CCCcC-EEEEEEEEecCceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcCCC
Confidence 55543 22355654321 1222379999999999999999999999999998855
No 181
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=83.02 E-value=0.8 Score=38.91 Aligned_cols=43 Identities=7% Similarity=-0.153 Sum_probs=33.1
Q ss_pred ceEEEee--CCc------cccccccccccchhhhhccccceEecCCCCcccc
Q psy17920 22 ILSISHF--NLE------QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTL 65 (393)
Q Consensus 22 ~~~i~v~--~p~------k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l 65 (393)
.|.|.+. .|. .+..+||||..+++.+... |++++|++|.+.|+
T Consensus 21 ~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iPpLP~K~~~ 71 (123)
T cd06894 21 DYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERD-SKIVVPPLPGKALK 71 (123)
T ss_pred EEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHc-CCCccCCCCCCcee
Confidence 3667664 332 2334799999999999865 99999999999987
No 182
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=82.97 E-value=3 Score=30.82 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=35.9
Q ss_pred HHHHHhHHHHHhHHHHHHhhhhhccCCHHHHHHHhhccChh
Q psy17920 315 EQINFYQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTV 355 (393)
Q Consensus 315 ~qi~~~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~ 355 (393)
..-+++.+++..+.....+.++.|.|+.++++.+..+.+..
T Consensus 8 el~~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~ 48 (59)
T PF10925_consen 8 ELKALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQR 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45578888999999999999999999999999999887654
No 183
>KOG2101|consensus
Probab=82.39 E-value=0.72 Score=46.31 Aligned_cols=56 Identities=18% Similarity=0.364 Sum_probs=44.5
Q ss_pred ceEecCCCCcccccC--------------Cccc-------cccCCChHHHHHHHHHHHHHH--HHHhcCCCcccccccc
Q psy17920 53 AVVADQTKKCQTLYK--------------REYQ-------KIGRYEEQFIEHRKNQLQSFV--DYVCRHPVLCRSPVWQ 108 (393)
Q Consensus 53 ~~v~rry~df~~l~~--------------P~K~-------~~g~~~~~Fie~Rr~~L~~fl--~rv~~HPvL~~~~~~~ 108 (393)
..|.|||+||.-||. |.+. ..++|+.+++..|+.+++.|| +..+.||.+..+..+.
T Consensus 154 ~~V~rRysdf~~l~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~fl~~~f~~~~~~~~~~~~~~ 232 (362)
T KOG2101|consen 154 AVVSRRYSDFSRLHRRLKRQFNPALRFPGPKFRNEIQKKKLLGNFDADVIPERSEALEEFLSLQFKDSKPSNVNCKKVM 232 (362)
T ss_pred ceeeechhHHHHHHHHHHHhcCccccCCCccchhHHHHHHhhccchhhhhhhhhhhHHHHHHhhhhhccccccchHHhh
Confidence 468999999988876 1112 345889999999999999999 8889999888776444
No 184
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=82.19 E-value=0.71 Score=38.37 Aligned_cols=43 Identities=9% Similarity=0.007 Sum_probs=36.2
Q ss_pred eEEEeeCCccccccccccccchhhhhccccceEecCCCCccccc
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
+.|.|.. -....+||||..+.+.+...+|++++|++|.+.++.
T Consensus 21 Y~I~~~~-~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~ 63 (112)
T cd06867 21 YVIRLGG-SEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLK 63 (112)
T ss_pred EEEEeee-EEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhh
Confidence 6777765 555668999999999999999999999999987653
No 185
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=81.98 E-value=1 Score=37.50 Aligned_cols=46 Identities=7% Similarity=0.021 Sum_probs=35.9
Q ss_pred ceEEEeeCCcc--------ccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 22 ILSISHFNLEQ--------ETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 22 ~~~i~v~~p~k--------~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
.|.|.|..+.. ...+||||..+...+...+|++.+|++|.+.++..
T Consensus 20 ~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~~~ 73 (112)
T cd06861 20 VYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSVGR 73 (112)
T ss_pred EEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccccC
Confidence 37777764321 33478999999999999999999999999988753
No 186
>KOG0521|consensus
Probab=81.89 E-value=93 Score=34.81 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=65.5
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCccccc----cchhHHHHHHHhHHhhhhhHHH----HHHHHHHHHHHH
Q psy17920 191 EYQKIGIDRSHLRDALKKTGDTYNELGKLFEEQPKLDW----EPLGDVLHIYKGIITSMPDILG----LHKDILNKKREY 262 (393)
Q Consensus 191 ~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~----~~l~e~L~ey~~ll~s~~~v~~----~~~~al~k~re~ 262 (393)
++..++.+...++.+|+..+..+..++..+..-..+-. .++.-..+.=...+...+..|. .+..++.|+-..
T Consensus 67 d~~~~~~~~~~~~~~l~~fs~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v~~~kk~f~ka~~~~d~a~~k~~~l 146 (785)
T KOG0521|consen 67 DLFSLGQDEEVISETLQKFSKVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEVKELKKLFEKASEEYDLALVKYSRL 146 (785)
T ss_pred HHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHhhHHHHHHHhhhh
Confidence 34344433333566777777776666654333221111 2222222222222232333332 233344444433
Q ss_pred HHhhhhccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy17920 263 EKMTTENKMEA---NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKD 323 (393)
Q Consensus 263 erl~~e~k~~~---~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~ 323 (393)
-+... .+... +++...+..|....-....=++--+.-|..+|-+.|..|+..|+.|++++
T Consensus 147 ~k~~~-~~~~~e~~~~l~~~r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g 209 (785)
T KOG0521|consen 147 PKKRR-SKVKTEVEEELAAARRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQG 209 (785)
T ss_pred hhccc-cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhccc
Confidence 22221 22211 34444444444443333333444556678899999999999999999999
No 187
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=81.54 E-value=27 Score=34.25 Aligned_cols=74 Identities=23% Similarity=0.368 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhhhhccCCHHHHH
Q psy17920 274 NRLQEVLKRTDTVSY-------ALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMTTENKMEANRLQ 346 (393)
Q Consensus 274 ~~ve~~~~~~e~is~-------~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~~e~k~~~~~~~ 346 (393)
..+..+++.|..+-. .+++||+..+.+-. ..+.--++-|...++..... ..|+.+|+-
T Consensus 182 ~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAm------------eiL~aRqkkAeeLkrltd~A---~~MsE~Ql~ 246 (302)
T PF07139_consen 182 SSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAM------------EILDARQKKAEELKRLTDRA---SQMSEEQLA 246 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH---hhcCHHHHH
Confidence 345566666766643 35666776666642 12222334455544444332 467777776
Q ss_pred HHhhccChhHHHHHHHHhhHHHHHHHH
Q psy17920 347 EVLKRTDTVSYALLGEINHFHQEQVSQ 373 (393)
Q Consensus 347 ~~~~r~~~~s~~~~ae~~~f~~~~~~d 373 (393)
++ -|||-||.++|=+|
T Consensus 247 EL-----------RadIK~fvs~rk~d 262 (302)
T PF07139_consen 247 EL-----------RADIKHFVSERKYD 262 (302)
T ss_pred HH-----------HHHHHHHhhhhhhH
Confidence 65 48999999999877
No 188
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=81.53 E-value=47 Score=31.13 Aligned_cols=95 Identities=14% Similarity=0.232 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh-hhhccCCHHHHHHHhhccChh--HH
Q psy17920 281 KRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM-TTENKMEANRLQEVLKRTDTV--SY 357 (393)
Q Consensus 281 ~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l-~~e~k~~~~~~~~~~~r~~~~--s~ 357 (393)
..++.+.+-.+.|+..+..-|..+++.. ....+..++. .....++..+.+-.+...++. .-
T Consensus 100 ~~Y~~~cK~~r~elK~~~~ar~kEikq~----------------~~Leklr~k~psdr~~isqae~el~kas~~~~rt~~ 163 (219)
T PF06730_consen 100 SQYGTICKHARDELKKFNKARNKEIKQL----------------KQLEKLRQKNPSDRQIISQAESELQKASVDATRTTK 163 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHccCCccchhhhHHHHHHHHHHHHHHHHHH
Confidence 3477888889999999988888776532 2222333332 222335555554455444444 45
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 358 ALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 358 ~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
.+-.-|.-|-.+|+.|+|..+..|+.-+-.|+=+
T Consensus 164 ~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaK 197 (219)
T PF06730_consen 164 QLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAK 197 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556689999999999999999999999888743
No 189
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=81.31 E-value=46 Score=30.93 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=31.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 356 SYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 356 s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
+.=..--||-.+..+-.+|...|-.|+..|..||+.
T Consensus 160 ~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~q 195 (207)
T cd07634 160 SLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHE 195 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555689999999999999999999999999974
No 190
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=81.11 E-value=1 Score=38.00 Aligned_cols=43 Identities=2% Similarity=-0.059 Sum_probs=34.6
Q ss_pred eEEEeeCCc--------cccccccccccchhhhhccccceEecCCCCcccc
Q psy17920 23 LSISHFNLE--------QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTL 65 (393)
Q Consensus 23 ~~i~v~~p~--------k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l 65 (393)
|.|.|..+. .+..+||||..+.+.+...+|++.+|++|.+.++
T Consensus 26 Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 76 (120)
T cd06865 26 YKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVV 76 (120)
T ss_pred EEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCccc
Confidence 667776542 2223699999999999999999999999998887
No 191
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=80.54 E-value=1 Score=38.17 Aligned_cols=34 Identities=6% Similarity=0.023 Sum_probs=30.7
Q ss_pred cccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 34 TESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 34 ~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
..+||||..+++.+...+|++.+|++|.+.|+.+
T Consensus 50 ~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~ 83 (120)
T cd06868 50 SKKYSEFEELYKKLSEKYPGTILPPLPRKALFVS 83 (120)
T ss_pred eCCcHHHHHHHHHHHHHCCCCCCCCCCCCcccCC
Confidence 4579999999999999999999999999999864
No 192
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=80.39 E-value=1.2 Score=37.84 Aligned_cols=30 Identities=13% Similarity=-0.049 Sum_probs=26.3
Q ss_pred ccccccccchhhhhccccceEecCCCCcccc
Q psy17920 35 ESCSRFIHGLDSAVKSLVAVVADQTKKCQTL 65 (393)
Q Consensus 35 ~~~s~f~~~~~~~~~~~~~~v~rry~df~~l 65 (393)
.+||||+.+++.+.. .|++++|++|.+.++
T Consensus 42 RRYsDF~~L~~~L~~-~~~~~iPpLP~K~~~ 71 (123)
T cd07293 42 RRYSDFEWLRSELER-ESKVVVPPLPGKALF 71 (123)
T ss_pred CCchHHHHHHHHHHh-ccCCccCCCCCCchh
Confidence 479999999999875 488999999999986
No 193
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=79.61 E-value=0.97 Score=39.34 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=26.8
Q ss_pred cccccccchhhhhcc--ccceEecCCCCcccc
Q psy17920 36 SCSRFIHGLDSAVKS--LVAVVADQTKKCQTL 65 (393)
Q Consensus 36 ~~s~f~~~~~~~~~~--~~~~v~rry~df~~l 65 (393)
+||||+.+++.++.+ ||++|+||.|++...
T Consensus 40 R~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~ 71 (141)
T cd06892 40 QHEEFVWLHDTLVENEDYAGLIIPPAPPKPDF 71 (141)
T ss_pred ccHHHHHHHHHHhhccCCCeEEECCCCCCccc
Confidence 689999999999974 899999999999754
No 194
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=78.78 E-value=1.5 Score=36.72 Aligned_cols=30 Identities=7% Similarity=0.005 Sum_probs=28.0
Q ss_pred cccccccchhhhhccccceEecCCCCcccc
Q psy17920 36 SCSRFIHGLDSAVKSLVAVVADQTKKCQTL 65 (393)
Q Consensus 36 ~~s~f~~~~~~~~~~~~~~v~rry~df~~l 65 (393)
+||||+.+.+.+...+|++++|++|.+.++
T Consensus 42 RysdF~~L~~~L~~~~p~~~iPpLP~K~~~ 71 (116)
T cd06860 42 RYQDFLWLRQKLEESHPTHIIPPLPEKHSV 71 (116)
T ss_pred eHHHHHHHHHHHHHHCCCCccCCCCCcchh
Confidence 699999999999999999999999999885
No 195
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=77.18 E-value=1.7 Score=37.41 Aligned_cols=58 Identities=10% Similarity=-0.161 Sum_probs=39.2
Q ss_pred CCccccccccccCCC-----ceEEEee--CCc---c---ccccccccccchhhhhccccceEecCCCCcccc
Q psy17920 7 DLNIVELIGLKVMDH-----ILSISHF--NLE---Q---ETESCSRFIHGLDSAVKSLVAVVADQTKKCQTL 65 (393)
Q Consensus 7 ~~~~~~~~~~~~~~~-----~~~i~v~--~p~---k---~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l 65 (393)
.|+|.++..-+-.++ .|.|.+. .|. + +..+||||+.+++.+.. .|++++|++|.+.|.
T Consensus 3 ~~~i~v~dP~~~~~g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~-~~g~~iPpLP~K~~~ 73 (132)
T cd07294 3 FLEIDIFNPQTVGVGRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER-DSKIVVPPLPGKALK 73 (132)
T ss_pred eEEEEeeCCeEecCCCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHH-cCCCccCCCCCCcee
Confidence 355555555555443 3666664 331 1 22379999999999975 489999999998873
No 196
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=75.40 E-value=68 Score=29.57 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=36.4
Q ss_pred HHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 344 RLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 344 ~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
++...++--.-.|.=....||-.+..+-.+|...|-.|+..|..||+.
T Consensus 141 ~L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~q 188 (200)
T cd07603 141 ILTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQ 188 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344443333334555667788899999999999999999999999974
No 197
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=75.13 E-value=2 Score=37.28 Aligned_cols=45 Identities=9% Similarity=-0.063 Sum_probs=36.2
Q ss_pred eEEEeeCCcc------ccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 23 LSISHFNLEQ------ETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 23 ~~i~v~~p~k------~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
++|.|.+|+- .-.+||||..+++.+...+|++.+|++|.+.|+..
T Consensus 49 VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~~~p~~~lPplPpK~~l~~ 99 (138)
T cd06879 49 VQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKKLFPKKKLPAAPPKGLLRM 99 (138)
T ss_pred EEEeecCCCCcceeeeeecCchHHHHHHHHHHHHCCCCcCCCCCCcccccC
Confidence 4566676643 22479999999999999999999999999999865
No 198
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=74.92 E-value=1.8 Score=35.67 Aligned_cols=46 Identities=9% Similarity=-0.068 Sum_probs=36.6
Q ss_pred ceEEEeeCCcc-ccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 22 ILSISHFNLEQ-ETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 22 ~~~i~v~~p~k-~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
.|.|++...+- ...+||||+.+...+...+|++.+|++|.+.|+..
T Consensus 20 ~Y~i~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~ 66 (105)
T cd06866 20 EYEVSSKRFKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIGGS 66 (105)
T ss_pred EEEEEEecCCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccccC
Confidence 46777664332 22378999999999999999999999999999963
No 199
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=74.48 E-value=74 Score=29.59 Aligned_cols=36 Identities=14% Similarity=0.346 Sum_probs=30.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 356 SYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 356 s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
|.-...-||-.+..|-.+|...|-.|+..|..||..
T Consensus 160 sLdYV~qi~~vq~rKkfefle~llsfm~a~~tffhq 195 (207)
T cd07636 160 SLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHH 195 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445688899999999999999999999999964
No 200
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=73.51 E-value=2.4 Score=35.70 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=35.7
Q ss_pred ceEEEeeCCc------cccccccccccchhhhhccccce---EecCCCCccccc
Q psy17920 22 ILSISHFNLE------QETESCSRFIHGLDSAVKSLVAV---VADQTKKCQTLY 66 (393)
Q Consensus 22 ~~~i~v~~p~------k~~~~~s~f~~~~~~~~~~~~~~---v~rry~df~~l~ 66 (393)
.|.|.|..+. ....+||||..+++.+...+|+. .+|++|.+.|+.
T Consensus 24 ~Y~I~v~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~ 77 (120)
T cd07280 24 VWKITIETKDLIGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWY 77 (120)
T ss_pred EEEEEEEeCCCCCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCcccc
Confidence 3677775443 22337999999999999999986 899999999986
No 201
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=72.38 E-value=2.2 Score=36.41 Aligned_cols=45 Identities=9% Similarity=0.038 Sum_probs=36.9
Q ss_pred eEEEeeCCc-cccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 23 LSISHFNLE-QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 23 ~~i~v~~p~-k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
+.|.+.+|. .+..+||||..+.+.+...+|++.+|++|.+.++..
T Consensus 23 Y~I~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~ 68 (125)
T cd06862 23 YQITPTHTNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVTGR 68 (125)
T ss_pred EEEEEecCcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccccC
Confidence 677877654 344579999999999999999999999999988743
No 202
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=72.01 E-value=84 Score=29.14 Aligned_cols=146 Identities=18% Similarity=0.184 Sum_probs=70.8
Q ss_pred HHHHHHHHhcc-----chh-HHHHHHHHHHHHHHHHHHHHhcCccc---cc-cchhHHHHHHHhHHhhhhhHHH-HHHHH
Q psy17920 187 LYKREYQKIGI-----DRS-HLRDALKKTGDTYNELGKLFEEQPKL---DW-EPLGDVLHIYKGIITSMPDILG-LHKDI 255 (393)
Q Consensus 187 ~~~~~~~~lg~-----d~s-~L~~al~~lg~~~~~i~~~~~~Q~~~---d~-~~l~e~L~ey~~ll~s~~~v~~-~~~~a 255 (393)
.|...++.+|. ..+ +|..+|..++.....+........+. ++ .|+...+..+...+......+. .++..
T Consensus 35 ~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~ 114 (219)
T PF08397_consen 35 AFFDALQKIGDMASNSRGSKELGDALMQISEVHRRIENELEEVFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRK 114 (219)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35556666665 122 49999999999988887654443332 22 3555556666655554433221 12221
Q ss_pred HHHHH----HHHHhh---hhccccH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17920 256 LNKKR----EYEKMT---TENKMEA--------NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFY 320 (393)
Q Consensus 256 l~k~r----e~erl~---~e~k~~~--------~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~ 320 (393)
...++ ++.|+. ..|+.+. +.+..-...++.+.....++.--=++.|---|-+.+..+++..+.||
T Consensus 115 ~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~ 194 (219)
T PF08397_consen 115 RDELKKAESELKKLRKKSRKGKDDQKYELKEALQDVTERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFH 194 (219)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 122221 1123221 22333333344443333333222222232335677778888888888
Q ss_pred HHHHHhHHHHHH
Q psy17920 321 QKDILNKKREYE 332 (393)
Q Consensus 321 qk~a~~~~~~~~ 332 (393)
.++........+
T Consensus 195 ~~~~~~L~~~~~ 206 (219)
T PF08397_consen 195 NEAVEHLQEKLD 206 (219)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH
Confidence 775554444433
No 203
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=71.90 E-value=86 Score=29.17 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=32.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 355 VSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 355 ~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
.|.-...-||-.+..+-.+|...|-.|+..|+.||.+
T Consensus 159 ~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~q 195 (207)
T cd07602 159 ASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQ 195 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566788899999999999999999999999964
No 204
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=70.28 E-value=1.1e+02 Score=29.70 Aligned_cols=125 Identities=14% Similarity=0.206 Sum_probs=73.0
Q ss_pred HHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHH------HHHHH-HHH
Q psy17920 188 YKREYQKIGIDR-SHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGL------HKDIL-NKK 259 (393)
Q Consensus 188 ~~~~~~~lg~d~-s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~------~~~al-~k~ 259 (393)
.++....+|..+ .+|++....+|..+..+|++. ..|...+..|...+.+++++=.. ++..+ .++
T Consensus 83 ~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e--------~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I 154 (271)
T PF13805_consen 83 AAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELE--------DQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEI 154 (271)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHH
Confidence 455677778753 358888888888888888654 34777888888888887764211 11111 111
Q ss_pred HHHHHhhhhccccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q psy17920 260 REYEKMTTENKMEANRLQEVLKR---TDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNK 327 (393)
Q Consensus 260 re~erl~~e~k~~~~~ve~~~~~---~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~ 327 (393)
.++... ......+..++++ .|.-+-..-+++..|.+++ ||+.+..-....+++.+|++.--
T Consensus 155 ---~kLk~k-~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~---lKEa~~~~f~Al~E~aEK~~Ila 218 (271)
T PF13805_consen 155 ---AKLKYK-DPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQK---LKEAYSLKFDALIERAEKQAILA 218 (271)
T ss_dssp ---HHHHHH--TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHhc-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 122110 0111233333332 3333333444566666655 78888888888888888877643
No 205
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=68.25 E-value=4.2 Score=34.43 Aligned_cols=45 Identities=4% Similarity=0.014 Sum_probs=33.6
Q ss_pred ceEEEeeCCc--------cccccccccccchhhhhcccc--ceEecCCCCccccc
Q psy17920 22 ILSISHFNLE--------QETESCSRFIHGLDSAVKSLV--AVVADQTKKCQTLY 66 (393)
Q Consensus 22 ~~~i~v~~p~--------k~~~~~s~f~~~~~~~~~~~~--~~v~rry~df~~l~ 66 (393)
.|.|++..+. ....+||||+.+++.+...+| ++++|++|.+.++.
T Consensus 20 ~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~ 74 (124)
T cd07281 20 VYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIG 74 (124)
T ss_pred EEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccc
Confidence 4667776431 223379999999999998775 57899999998764
No 206
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=68.03 E-value=3.9 Score=34.97 Aligned_cols=32 Identities=13% Similarity=0.003 Sum_probs=27.9
Q ss_pred cccccccccchhhhhccccceEecCCCCcccc
Q psy17920 34 TESCSRFIHGLDSAVKSLVAVVADQTKKCQTL 65 (393)
Q Consensus 34 ~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l 65 (393)
..+||||+.+++.+...+|++++|++|.+..+
T Consensus 49 ~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 80 (129)
T cd06864 49 WRRYSEFELLRNYLVVTYPYVIVPPLPEKRAM 80 (129)
T ss_pred EeCcHHHHHHHHHHHHHCCCCCCCCCCCccee
Confidence 34799999999999999999999999998653
No 207
>KOG1451|consensus
Probab=64.54 E-value=2.1e+02 Score=30.87 Aligned_cols=131 Identities=13% Similarity=0.105 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHH-HHHh-hh----hcccc--
Q psy17920 202 LRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKRE-YEKM-TT----ENKME-- 272 (393)
Q Consensus 202 L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re-~erl-~~----e~k~~-- 272 (393)
++.+|...|....++-+-.-.-..+--+.+.++|..+.. .|+..+..-....+--+|.-+ ++|. -+ ++...
T Consensus 83 ia~slkefa~ll~~ve~er~~~v~~Ase~li~PlekFRkEqIG~~KE~KkKydKe~ekfy~~LekHLhLSskkesqlqeA 162 (812)
T KOG1451|consen 83 IATSLKEFASLLNQVEDERMRMVGNASESLIEPLEKFRKEQIGTLKEEKKKYDKESEKFYQTLEKHLHLSSKKESQLQEA 162 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhhhhHHHHhhhhhhhHHHHHHHHHHhccccchhhHHHHH
Confidence 778888888877776642111111222457777777754 344444332222211111111 1221 11 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Q psy17920 273 ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYE 332 (393)
Q Consensus 273 ~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~ 332 (393)
..+|+..+..|=..|-.--.|++--++.+.-+|-+-+..|+.+...|||-+..-.....+
T Consensus 163 D~Qvd~~r~nFfe~SL~YV~~vQeVQErk~FefVEpllafl~slf~f~h~g~el~qDF~p 222 (812)
T KOG1451|consen 163 DAQVDTQRKNFFEASLQYVAEVQEVQERKRFEFVEPLLAFLYSLFSFFHVGSELHQDFKP 222 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHhhhhh
Confidence 256777777787888778889999999999999999999999999999988776655544
No 208
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=63.93 E-value=6.1 Score=32.61 Aligned_cols=46 Identities=9% Similarity=0.064 Sum_probs=35.5
Q ss_pred ceEEEeeCCc--------cccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 22 ILSISHFNLE--------QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 22 ~~~i~v~~p~--------k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
.|.|.|.... ....+||||..++..+...+|+.++|++|.+.++..
T Consensus 20 ~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~~~ 73 (114)
T cd06859 20 VYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAVGR 73 (114)
T ss_pred EEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCcccCc
Confidence 3667765422 222379999999999999999999999999988754
No 209
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.23 E-value=1.3e+02 Score=27.88 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 355 VSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 355 ~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
.+.=...-||-.+..+-.+|...|-.|+..|..||++
T Consensus 152 ~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tfF~q 188 (200)
T cd07639 152 RALDYALQINVIEDKKKFDILEFMLQLMEAQASFFQQ 188 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667899999999999999999999999999974
No 210
>KOG3725|consensus
Probab=61.61 E-value=1.6e+02 Score=28.40 Aligned_cols=60 Identities=8% Similarity=0.125 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhh
Q psy17920 274 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKM 334 (393)
Q Consensus 274 ~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l 334 (393)
+++-.++.+|+.-++..+-=++-....-+..++ -|.+|++.|..||-++..--...-..|
T Consensus 203 qelRvaQ~EFDrQaEiTrLLLEGIsstH~nhLr-CL~dFVeaQmtyYAQcyq~MlDLQkqL 262 (375)
T KOG3725|consen 203 QELRVAQAEFDRQAEITRLLLEGISSTHNNHLR-CLRDFVEAQMTYYAQCYQLMLDLQKQL 262 (375)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666766554444333334333333333 478999999999998876655554433
No 211
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=60.38 E-value=4.8 Score=33.01 Aligned_cols=44 Identities=9% Similarity=-0.137 Sum_probs=36.7
Q ss_pred eEEEeeCCccccccccccccchhhhhccccceEecCCCCccccc
Q psy17920 23 LSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
|.|.|.+......+||||..+...+...+|++..|.+|.+.|+.
T Consensus 21 Y~I~v~~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~ 64 (104)
T cd06885 21 YNIHINGVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLP 64 (104)
T ss_pred EEEEECCcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCcccc
Confidence 67888766666668999999999999888888889999988864
No 212
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=59.69 E-value=5.9 Score=33.00 Aligned_cols=33 Identities=9% Similarity=0.028 Sum_probs=29.3
Q ss_pred ccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 35 ESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 35 ~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
.+||||..+.+.+...+|...++++|.+.++..
T Consensus 41 RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~~ 73 (113)
T cd06898 41 RRYSEFVWLRNRLQKNALLIQLPSLPPKNLFGR 73 (113)
T ss_pred cchHHHHHHHHHHHHHCCCCcCCCCCCCccccC
Confidence 479999999999999999889999999988864
No 213
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=59.00 E-value=4.9 Score=33.95 Aligned_cols=44 Identities=11% Similarity=-0.052 Sum_probs=33.8
Q ss_pred eEEEeeCCcc------ccccccccccchhhhhccccceEecCCCCccccc
Q psy17920 23 LSISHFNLEQ------ETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 23 ~~i~v~~p~k------~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
|.|.|..... ...+||||..++..+...+|++.+|++|.+.|+.
T Consensus 36 Y~I~V~~~~~~~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~~~ 85 (119)
T cd06869 36 FIIRVRREGEEYRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDKLP 85 (119)
T ss_pred EEEEEEECCCCCCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCchhH
Confidence 5566654332 2236999999999999999999999999988754
No 214
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=58.85 E-value=69 Score=23.80 Aligned_cols=73 Identities=11% Similarity=0.197 Sum_probs=38.6
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Q psy17920 148 SHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQ----TLYKREYQKIGIDRSHLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 148 ~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~----~~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~ 220 (393)
++..+......+..+...|+..+..|......+..--. ..|...|.++......+.+.|..+++.+...+..+
T Consensus 5 d~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~ 81 (86)
T PF06013_consen 5 DPEQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELSQALRQAAQNY 81 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777777777777777766666521100 12333333333333345555555555555555443
No 215
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=57.39 E-value=1.6e+02 Score=27.31 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=30.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 356 SYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 356 s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
|.=...-||-.+..|-.+|...|-.|++.|+.||..
T Consensus 160 sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhq 195 (207)
T cd07635 160 SLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQ 195 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445688899999999999999999999999964
No 216
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=56.13 E-value=1.8e+02 Score=27.26 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=31.4
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 355 VSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 355 ~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
.+.=...-||-.+..|-.+|...|-.|++.|+.||+.
T Consensus 158 ~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~q 194 (215)
T cd07601 158 TAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKM 194 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556688889999999999999999999999974
No 217
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=55.56 E-value=5.9 Score=31.70 Aligned_cols=44 Identities=9% Similarity=-0.041 Sum_probs=33.7
Q ss_pred eEEEeeCCc---cccccccccccchhhhhccccceEecCCCCccccc
Q psy17920 23 LSISHFNLE---QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 23 ~~i~v~~p~---k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
+.|.+.++. ....+||||..+...+...+|+..+|.+|...|+.
T Consensus 17 ~~v~~~~~~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~ 63 (105)
T smart00312 17 IEIETKTGLEEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFG 63 (105)
T ss_pred EEEEECCCCceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhcc
Confidence 445555552 22236899999999999999988899999998874
No 218
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=55.24 E-value=5.3 Score=34.17 Aligned_cols=33 Identities=6% Similarity=-0.065 Sum_probs=28.2
Q ss_pred ccccccccchhhhhccccc-eEecCCCCcccccC
Q psy17920 35 ESCSRFIHGLDSAVKSLVA-VVADQTKKCQTLYK 67 (393)
Q Consensus 35 ~~~s~f~~~~~~~~~~~~~-~v~rry~df~~l~~ 67 (393)
.+||||+.+++.+...+|. .++|++|++.....
T Consensus 36 RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~g~ 69 (126)
T cd07285 36 HRYKHFDWLYERLLVKFGLAIPIPSLPDKQVTGR 69 (126)
T ss_pred CCccHHHHHHHHHHHhcCCCcccCCCCCccccCC
Confidence 3799999999999988875 56999999988754
No 219
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.95 E-value=1.8e+02 Score=26.78 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=38.8
Q ss_pred HHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 343 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 343 ~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
.++...++----.|.=....||-.+..+-.+|...|-.|+..|+.||++
T Consensus 140 ~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~q 188 (200)
T cd07637 140 STLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQ 188 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444445666677899999999999999999999999999974
No 220
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=53.69 E-value=7.8 Score=31.61 Aligned_cols=45 Identities=7% Similarity=-0.126 Sum_probs=36.6
Q ss_pred ceEEEeeCCcccc---ccccccccchhhhhccccceEecCCCCccccc
Q psy17920 22 ILSISHFNLEQET---ESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 22 ~~~i~v~~p~k~~---~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
.|.|.|..+...- .+||||..++..+...+|....+++|.+.|+.
T Consensus 17 ~Y~I~v~~~~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~ 64 (108)
T cd06897 17 VYNIQVRLPLRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFL 64 (108)
T ss_pred EEEEEEEcCCceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEec
Confidence 4788888774332 27999999999999888988888999999886
No 221
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.58 E-value=1.9e+02 Score=26.89 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=30.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 356 SYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 356 s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
.|++ -||-.+..+-.+|-..|-.|+..+..||..
T Consensus 162 dYV~--qI~~vQerKKfeive~mLsf~~a~~tf~hq 195 (207)
T cd07633 162 EYVY--QIQEVQESKKFDVVEPVLAFLHSLFTSNNL 195 (207)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5655 589999999999999999999999999964
No 222
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=53.32 E-value=2e+02 Score=27.10 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=36.9
Q ss_pred HHHHHHHHhcc------chhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhH
Q psy17920 187 LYKREYQKIGI------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGI 241 (393)
Q Consensus 187 ~~~~~~~~lg~------d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~l 241 (393)
.|++.+..|+. +...|..++..+-...+.+++.+...++.-...+.++|..|..-
T Consensus 37 ~Yak~L~klak~~~~~~e~Gtl~~sw~~~~~e~E~~a~~H~~la~~L~~ev~~~l~~f~~~ 97 (233)
T cd07649 37 EYAKNLSKLSQSSLAAQEEGTLGEAWAQVKKSLADEAEVHLKFSSKLQSEVEKPLLNFREN 97 (233)
T ss_pred HHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555554 23458888888888888888887776665555566677776553
No 223
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=51.92 E-value=6.6 Score=25.94 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCCccccccc
Q psy17920 87 QLQSFVDYVCRHPVLCRSPVW 107 (393)
Q Consensus 87 ~L~~fl~rv~~HPvL~~~~~~ 107 (393)
.|..||+.|.+||.|+.++.+
T Consensus 3 ~l~~Yl~ei~~~~LLt~eeE~ 23 (37)
T PF00140_consen 3 SLRLYLKEIGRYPLLTAEEEI 23 (37)
T ss_dssp HHHHHHHHHHHS-EETTHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHH
Confidence 688999999999999877643
No 224
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=51.33 E-value=8.9 Score=31.58 Aligned_cols=44 Identities=7% Similarity=-0.049 Sum_probs=34.4
Q ss_pred ceEEEeeCCccccccccccccchhhhhccccceEecCCCCcccc
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTL 65 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l 65 (393)
.|.|.|.+--....+||||..+++.+...+|....|++|.+.++
T Consensus 23 vY~I~~~~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~ 66 (106)
T cd06886 23 VYNIYMAGRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPF 66 (106)
T ss_pred EEEEEEcCCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 36677766444445799999999999988888888999988665
No 225
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=49.68 E-value=6.7 Score=32.88 Aligned_cols=33 Identities=12% Similarity=-0.149 Sum_probs=29.3
Q ss_pred cccccccccchhhhhccccceEecCCCCccccc
Q psy17920 34 TESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 34 ~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
..+||||..+++.+...+|++.+|++|.+.+..
T Consensus 41 ~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~~ 73 (116)
T cd07295 41 RRRYSDFEYFRDILERESPRVMIPPLPGKIFTN 73 (116)
T ss_pred ecChhHHHHHHHHHHHHCCCCccCCCCCCcccc
Confidence 347999999999999999999999999998774
No 226
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=49.55 E-value=9.5 Score=31.45 Aligned_cols=45 Identities=9% Similarity=-0.072 Sum_probs=35.0
Q ss_pred ceEEEeeCCc----cccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 22 ILSISHFNLE----QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 22 ~~~i~v~~p~----k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
.|.|.|..+. ....+||||..+++.+...+|+ ..+++|.+.|+..
T Consensus 22 vY~I~v~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~-~~~~lP~K~~~~~ 70 (110)
T cd07276 22 VYKIRVENKVGDSWFVFRRYTDFVRLNDKLKQMFPG-FRLSLPPKRWFKD 70 (110)
T ss_pred EEEEEEEECCCCEEEEEEehHHHHHHHHHHHHHCCC-CCCCCCCcceecc
Confidence 4788888774 1223799999999999988888 5679999988753
No 227
>KOG0577|consensus
Probab=49.20 E-value=4e+02 Score=29.28 Aligned_cols=95 Identities=17% Similarity=0.208 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhH
Q psy17920 287 SYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHF 366 (393)
Q Consensus 287 s~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f 366 (393)
.+.+.+|=..|++.....=+.-|..|+..|..-|+-.-.+|+.....-. .|.-.+.+.--. ..-+-++|+
T Consensus 551 ak~~~a~EkKfqq~i~~qqkk~l~~~~e~qkkeYK~~KE~~KeeL~e~~---stPkrek~e~l~-------~qKe~Lq~~ 620 (948)
T KOG0577|consen 551 AKAASAEEKKFQQHILGQQKKELKAYLEAQKKEYKLNKEQLKEELQENP---STPKREKAEWLL-------RQKENLQQC 620 (948)
T ss_pred HHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCC---CCCchHHHHHHH-------HHHHHHHHH
Confidence 3456777788999998888999999999999999988888887765322 222222222111 245779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 367 HQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 367 ~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
..++..+|-...+.||+.++-+|..
T Consensus 621 qaeeEa~ll~~qrqy~ele~r~ykR 645 (948)
T KOG0577|consen 621 QAEEEAGLLRRQRQYLELECRRYKR 645 (948)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999974
No 228
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=49.09 E-value=2.4e+02 Score=26.70 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=23.5
Q ss_pred HHHHHHHHhccc------hhHHHHHHHHHHHHHHHHHHHHh
Q psy17920 187 LYKREYQKIGID------RSHLRDALKKTGDTYNELGKLFE 221 (393)
Q Consensus 187 ~~~~~~~~lg~d------~s~L~~al~~lg~~~~~i~~~~~ 221 (393)
.|...++++|.. .-+|..+|.++++...+|.....
T Consensus 47 ~y~dAl~Kige~A~~s~gSkeLG~~L~~m~~~hr~i~~~le 87 (232)
T cd07646 47 GYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLE 87 (232)
T ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666661 22499999999999888764433
No 229
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=48.63 E-value=13 Score=22.96 Aligned_cols=11 Identities=45% Similarity=0.757 Sum_probs=6.8
Q ss_pred HHHHHHHHHHH
Q psy17920 83 HRKNQLQSFVD 93 (393)
Q Consensus 83 ~Rr~~L~~fl~ 93 (393)
.|+.+|++||.
T Consensus 3 aRK~SLqRFLe 13 (27)
T PF09425_consen 3 ARKASLQRFLE 13 (27)
T ss_dssp ---HHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 47788888887
No 230
>KOG2528|consensus
Probab=48.37 E-value=13 Score=38.13 Aligned_cols=111 Identities=22% Similarity=0.361 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHH-----H---HHHHHHHHHhhhhcccc-
Q psy17920 202 LRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKD-----I---LNKKREYEKMTTENKME- 272 (393)
Q Consensus 202 L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~-----a---l~k~re~erl~~e~k~~- 272 (393)
+.+-.+.+|.++..++..++--+..+..+|.+.+..--+....+-.++..+-+ . |.-++.. +.+..+
T Consensus 364 ~kke~qk~g~a~~~l~~~f~~d~~~~s~~L~~ai~~~g~~y~~Ig~lfa~qpk~Dl~p~~d~l~~y~G~----l~nfpDI 439 (490)
T KOG2528|consen 364 FKKEYQKMGSAFQTLAQAFEIDPTVDSRPLNEAIGLTGDAYHEIGELFAEQPKQDLDPVMDLLVLYQGH----LQNFPDI 439 (490)
T ss_pred chHHHHHHHHHHHHHHHhhhcCccccccchhhhhhhhhHHHHHHHHHhhcccccchhHHHHHHHHhhcc----cccccch
Confidence 55666777777777776655444444455555554433333334444433211 1 1111111 011111
Q ss_pred ----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy17920 273 ----ANRLQEVLKRTDTVSYAL-LGEINHFHQEQVSQINAAMKSFLTEQINFYQKDIL 325 (393)
Q Consensus 273 ----~~~ve~~~~~~e~is~~v-~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~ 325 (393)
..++..++. ++.+...- ++||+||+.+|..|| ..||.||++++.
T Consensus 440 I~~hK~A~~k~ke-s~~~~~~g~~aem~hf~~~~~~~~--------~qqi~Fyq~v~~ 488 (490)
T KOG2528|consen 440 IHVHKGALAKVKE-SEQLVAEGFKAEMQHFLQEREYDF--------SQQIIFYQKVAQ 488 (490)
T ss_pred hhhhHHHHHHHHH-HHHHhhhhHHHHHHHHHhhccccH--------HHHHHHHHHHhh
Confidence 133444433 55555443 999999999999999 889999999875
No 231
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=47.89 E-value=13 Score=31.23 Aligned_cols=33 Identities=9% Similarity=-0.052 Sum_probs=27.2
Q ss_pred ccccccccchhhhhccccc-----eEecCCCCcccccC
Q psy17920 35 ESCSRFIHGLDSAVKSLVA-----VVADQTKKCQTLYK 67 (393)
Q Consensus 35 ~~~s~f~~~~~~~~~~~~~-----~v~rry~df~~l~~ 67 (393)
.+||||..+++.+...+|. .++|++|...|+..
T Consensus 42 RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~g~ 79 (118)
T cd07287 42 KRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVFGR 79 (118)
T ss_pred CCchHHHHHHHHHHHhccccccCCcccCCCCCceeecC
Confidence 4799999999999987763 56899999888854
No 232
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=46.70 E-value=12 Score=31.45 Aligned_cols=46 Identities=4% Similarity=-0.120 Sum_probs=35.4
Q ss_pred ceEEEeeCCc-----------cccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 22 ILSISHFNLE-----------QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 22 ~~~i~v~~p~-----------k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
.|.|.|..+. .+..+||||..++..+...+|....+++|.+.++..
T Consensus 24 ~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~~~ 80 (119)
T cd06877 24 VFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIFGP 80 (119)
T ss_pred EEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCcccCC
Confidence 4778887431 122379999999999988888888899999988865
No 233
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=46.48 E-value=2.5e+02 Score=26.21 Aligned_cols=136 Identities=17% Similarity=0.194 Sum_probs=80.2
Q ss_pred HHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHH---------
Q psy17920 187 LYKREYQKIGID--RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDI--------- 255 (393)
Q Consensus 187 ~~~~~~~~lg~d--~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~a--------- 255 (393)
.|+..|..+|.- .+.++.++..-|++-..+..--..- -.-.-+|...|+-|. -.+++|..-.-+..
T Consensus 41 ~~Gd~Fa~l~~re~~p~l~eeF~~~ae~hR~l~k~G~~l-l~ai~~~~s~l~T~l--~KaipDT~lTikkY~~ar~EY~a 117 (215)
T cd07659 41 EFGDLFANIGVREPQPAASEAFTKFGEAHRSIEKFGIEL-LKTLKPMLSDLGTYL--NKAIPDTKLTIKKYADVKFEYLS 117 (215)
T ss_pred HHHHHHHHHHccCCChhHHHHHHHhHHHHHHHHHhHHHH-HHHhHHHHHHHHHHH--HhhCchHHHHHHHHHHHHHHHHH
Confidence 456666666662 4468899998888877665211000 001122333333332 23456654443332
Q ss_pred -HHHHHHHHH--hhhhccc--cH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 256 -LNKKREYEK--MTTENKM--EA--------------NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQ 316 (393)
Q Consensus 256 -l~k~re~er--l~~e~k~--~~--------------~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~q 316 (393)
..+++++.- .. .+-. +. ..-..++.+++.+-..|..-++-.+..+++|+..-|.-|....
T Consensus 118 yc~kvkEmd~ee~~-~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~ai 196 (215)
T cd07659 118 YCLKVKEMDDEEYS-YAALDEPLYRVETGNYEYRLILRCRQEARARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSAL 196 (215)
T ss_pred HHHHHHHhcccccc-cccccCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 334554410 00 0000 11 2225677889999999999999999999999999999999998
Q ss_pred HHHhHHHHHh
Q psy17920 317 INFYQKDILN 326 (393)
Q Consensus 317 i~~~qk~a~~ 326 (393)
..||..+...
T Consensus 197 say~~~~~~~ 206 (215)
T cd07659 197 SEYHSDCHEL 206 (215)
T ss_pred HHHHHHHHHH
Confidence 8888765543
No 234
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=45.24 E-value=2.6e+02 Score=26.10 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=28.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 360 LGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 360 ~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
..-||-.+..|-.+|-..|-.|++-|+.||.+
T Consensus 163 V~qiN~lQ~RKKfeiLE~mLsym~Aq~TFFhQ 194 (215)
T cd07632 163 YCALNALQYRKRVAMLEPMLGYTHGQINFFKK 194 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688889999999999999999999999964
No 235
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=43.94 E-value=12 Score=31.38 Aligned_cols=58 Identities=10% Similarity=-0.138 Sum_probs=37.8
Q ss_pred cccccccccCCCceEEEeeC-----Cccc-----cccccccccchhhhhccccc----eEecCCCCcccccC
Q psy17920 10 IVELIGLKVMDHILSISHFN-----LEQE-----TESCSRFIHGLDSAVKSLVA----VVADQTKKCQTLYK 67 (393)
Q Consensus 10 ~~~~~~~~~~~~~~~i~v~~-----p~k~-----~~~~s~f~~~~~~~~~~~~~----~v~rry~df~~l~~ 67 (393)
|++.-.++.+--.|.|.|.- |... ..+||||..+++.+...+|. ..+|++|.+.|+..
T Consensus 7 V~d~~~~~~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~~g~ 78 (117)
T cd06881 7 VTDTRRHKKGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKYFGR 78 (117)
T ss_pred ecCcceecCceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCcccCC
Confidence 34444443333347677652 2222 23799999999999887763 35699999999875
No 236
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=42.88 E-value=71 Score=26.46 Aligned_cols=47 Identities=2% Similarity=0.140 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhhhhccCCHHHHHHHhh
Q psy17920 304 QINAAMKSFLTEQINFYQKDILNKKREYEKMTTENKMEANRLQEVLK 350 (393)
Q Consensus 304 Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~ 350 (393)
++..-+..|+-.=+-...-.+..-.+.+..|+..|+||.+++..+-.
T Consensus 3 ~m~~~l~k~~~~gaG~~a~~~ek~~klvDelVkkGeln~eEak~~vd 49 (108)
T COG3937 3 YMGEGLRKLALIGAGLAAETAEKVQKLVDELVKKGELNAEEAKRFVD 49 (108)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34555555555544444555666677888999999999999887644
No 237
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=42.66 E-value=17 Score=30.06 Aligned_cols=45 Identities=7% Similarity=-0.034 Sum_probs=34.3
Q ss_pred eEEEeeCCc-------cccccccccccchhhhhccccceE-ecCCCCcccccC
Q psy17920 23 LSISHFNLE-------QETESCSRFIHGLDSAVKSLVAVV-ADQTKKCQTLYK 67 (393)
Q Consensus 23 ~~i~v~~p~-------k~~~~~s~f~~~~~~~~~~~~~~v-~rry~df~~l~~ 67 (393)
|.|.|..+. ....+||||..+++.+...+|+.+ .+++|.+.++.+
T Consensus 21 Y~I~v~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~~~ 73 (112)
T cd07279 21 YQLAVVQTGDPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLMGN 73 (112)
T ss_pred EEEEEEECCCCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeeccc
Confidence 677776543 233479999999999999999865 568999888764
No 238
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=40.69 E-value=3.4e+02 Score=26.08 Aligned_cols=37 Identities=11% Similarity=-0.022 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHH
Q psy17920 201 HLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHI 237 (393)
Q Consensus 201 ~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~e 237 (393)
.|..|...+-...+.+|..+..-++.-.....+.++.
T Consensus 61 tl~~aw~~i~~etE~ia~~H~~la~~L~~e~~e~~r~ 97 (258)
T cd07680 61 SLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKN 97 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5888888888888888877766555444445666643
No 239
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=40.13 E-value=18 Score=30.12 Aligned_cols=46 Identities=9% Similarity=-0.060 Sum_probs=34.1
Q ss_pred ceEEEeeCC-------ccccccccccccchhhhhccccceEe-cCCCCcccccC
Q psy17920 22 ILSISHFNL-------EQETESCSRFIHGLDSAVKSLVAVVA-DQTKKCQTLYK 67 (393)
Q Consensus 22 ~~~i~v~~p-------~k~~~~~s~f~~~~~~~~~~~~~~v~-rry~df~~l~~ 67 (393)
.|.|.|... -....+||||..+++.+...+|..+. .+||.+.|+..
T Consensus 20 ~Y~I~v~~~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~~~ 73 (112)
T cd07301 20 LYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLRKN 73 (112)
T ss_pred EEEEEEEecCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCcccCC
Confidence 377887421 12334799999999999998998654 58999999854
No 240
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=39.97 E-value=17 Score=28.64 Aligned_cols=45 Identities=11% Similarity=-0.038 Sum_probs=36.0
Q ss_pred eEEEeeCCc----cccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 23 LSISHFNLE----QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 23 ~~i~v~~p~----k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
|.|.|..+. ....+|++|..+.+.+...+|+...|.+|...|...
T Consensus 20 Y~i~v~~~~~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~~~ 68 (106)
T cd06093 20 YIIEVTTQGGEEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLFGN 68 (106)
T ss_pred EEEEEEECCCCeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCccccc
Confidence 778887765 111268999999999999999899999999988853
No 241
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.90 E-value=3.1e+02 Score=25.35 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=32.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 355 VSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 355 ~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
.+.=...-||-.+..|-.+|...|-.|++.|+.||.+
T Consensus 152 ~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~q 188 (200)
T cd07638 152 IALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQ 188 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555567789999999999999999999999999974
No 242
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=39.81 E-value=15 Score=31.43 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=34.6
Q ss_pred ceEEEeeCCc--------cccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 22 ILSISHFNLE--------QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 22 ~~~i~v~~p~--------k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
.|.|.|.... ....+||||..+++.+...+|+...+++|.+.++..
T Consensus 40 ~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~~~ 93 (133)
T cd06876 40 VYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKISL 93 (133)
T ss_pred EEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCccccccC
Confidence 3667776422 233479999999999998899888889999888753
No 243
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=38.81 E-value=3.3e+02 Score=25.45 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=29.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 356 SYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 356 s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
-|.++ ||-.+..+..|+-..|-.|.+.|..|||+
T Consensus 167 dYllq--in~iq~Kk~~eiLq~ll~~~hAq~tfFqq 200 (215)
T cd07641 167 EYLIK--VNEIKTKKGVDLLQNLIKYYHAQCNFFQD 200 (215)
T ss_pred HHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56554 66688999999999999999999999985
No 244
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=38.72 E-value=3.3e+02 Score=25.36 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcc------chhHHHHHHHHHHHHHHHHHHHHhcCccccccchhH
Q psy17920 163 IHGLDSAVKSLVAVVADQTKKCQT---LYKREYQKIGI------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGD 233 (393)
Q Consensus 163 l~~L~~~l~~L~~~~~~l~kk~~~---~~~~~~~~lg~------d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e 233 (393)
.+.+..++..+..+.. +.+.++. .|++.+..|+. +..+|..++..+-...+.++..+...++.-...+.+
T Consensus 11 ~~r~~~g~~~~~el~~-f~keRa~iE~eYak~L~kLakk~~~~~~~gsl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~ 89 (236)
T cd07651 11 QTRIKDSLRTLEELRS-FYKERASIEEEYAKRLEKLSRKSLGGSEEGGLKNSLDTLRLETESMAKSHLKFAKQIRQDLEE 89 (236)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544444332 2233322 35555555555 123588888888888888887776655543334556
Q ss_pred HHHHHHhH
Q psy17920 234 VLHIYKGI 241 (393)
Q Consensus 234 ~L~ey~~l 241 (393)
+|..|..-
T Consensus 90 ~l~~~~~~ 97 (236)
T cd07651 90 KLAAFASS 97 (236)
T ss_pred HHHHHHHH
Confidence 66665433
No 245
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=36.83 E-value=28 Score=29.25 Aligned_cols=33 Identities=6% Similarity=-0.120 Sum_probs=26.9
Q ss_pred ccccccccchhhhhccccc-----eEecCCCCcccccC
Q psy17920 35 ESCSRFIHGLDSAVKSLVA-----VVADQTKKCQTLYK 67 (393)
Q Consensus 35 ~~~s~f~~~~~~~~~~~~~-----~v~rry~df~~l~~ 67 (393)
.+||||..+++.+...+++ .++|++|.+.|+..
T Consensus 42 RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~g~ 79 (118)
T cd07288 42 KRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVFGR 79 (118)
T ss_pred CCchHHHHHHHHHHHhcccccccCCccCCCCCceeecc
Confidence 3799999999999876544 36999999999864
No 246
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=35.95 E-value=20 Score=29.55 Aligned_cols=45 Identities=7% Similarity=-0.121 Sum_probs=35.2
Q ss_pred ceEEEeeCCc-----cccccccccccchhhhhccccceEecCCCCccccc
Q psy17920 22 ILSISHFNLE-----QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 22 ~~~i~v~~p~-----k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
.|.|.|..+. ....+||||..++..+...+|....|.+|...++.
T Consensus 18 vY~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~ 67 (109)
T cd06883 18 IYVVKVTRENQTEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLG 67 (109)
T ss_pred EEEEEEEECCCCCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccC
Confidence 4778887654 22237899999999999899998889999987763
No 247
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.61 E-value=3.7e+02 Score=25.07 Aligned_cols=61 Identities=11% Similarity=0.232 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 275 RLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 275 ~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
.++.+..+-+.=...+-.=++.-+.+|..=+|++|..|+...-.++.+.-..-......|.
T Consensus 147 ~l~~~~~~We~~~~~~~e~fQ~leeeRl~~lk~~l~~y~~~~sd~~~~~~~~~E~~~~~l~ 207 (228)
T cd07650 147 DLEEARQQWDSQAPFLFELLQAIDEERLNHLKDVLLQFQTHESDYALRTTESAEECMNQLL 207 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhHHHHHHHHHHh
Confidence 3444444444444445555677788899999999999999988887776665555544433
No 248
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=35.40 E-value=24 Score=29.74 Aligned_cols=47 Identities=11% Similarity=-0.010 Sum_probs=35.8
Q ss_pred CceEEEeeCCcc---ccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 21 HILSISHFNLEQ---ETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 21 ~~~~i~v~~p~k---~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
-.|.|.|..+.. ...+||+|..+++.+...+|....+.+|.+.++..
T Consensus 19 ~vY~I~v~~~~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~g~ 68 (118)
T cd07277 19 HVYQVYIRIRDDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAIGN 68 (118)
T ss_pred EEEEEEEEECCCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCccCC
Confidence 357788764422 22379999999999998888876778999888865
No 249
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=34.55 E-value=25 Score=29.52 Aligned_cols=33 Identities=9% Similarity=-0.089 Sum_probs=28.7
Q ss_pred ccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 35 ESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 35 ~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
.+||||..+++.+...+|....+.+|.+.|+.+
T Consensus 45 RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~~~ 77 (120)
T cd06873 45 RRYSDFHDLHMRLKEKFPNLSKLSFPGKKTFNN 77 (120)
T ss_pred eehHHHHHHHHHHHHHCcCCCCCCCCCCcccCC
Confidence 379999999999999999877789999998865
No 250
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=34.55 E-value=39 Score=28.23 Aligned_cols=42 Identities=10% Similarity=0.151 Sum_probs=27.4
Q ss_pred cceEecCCCCcccccC-----------------CccccccCCChHHHHHHHHHHHHHHHHHhc
Q psy17920 52 VAVVADQTKKCQTLYK-----------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCR 97 (393)
Q Consensus 52 ~~~v~rry~df~~l~~-----------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~ 97 (393)
+..|.|.|-||..|.+ |++....+ +++++ ...|.+||.|+..
T Consensus 40 sw~VkRSyEdfr~LD~~LHrCvyDRrfS~L~eLp~~~~l~~-~~~~v---~~~l~~YL~RlS~ 98 (115)
T cd07298 40 SWIVKRSYEDFRVLDKHLHLCIYDRRFSQLPELPRSDSLKD-SPESV---TQMLMAYLSRLSA 98 (115)
T ss_pred ceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCCcccccc-cHHHH---HHHHHHHHHHHHH
Confidence 4579999999988755 55443322 35555 4577888877653
No 251
>PF13035 DUF3896: Protein of unknown function (DUF3896)
Probab=34.48 E-value=1.3e+02 Score=21.64 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=33.9
Q ss_pred HhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHH-HHHHhhHH
Q psy17920 325 LNKKREYEKMTTENKMEANRLQEVLKRTDTVSYAL-LGEINHFH 367 (393)
Q Consensus 325 ~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~-~ae~~~f~ 367 (393)
..+...|.+|. .-+++..+-+-++.-.|+--|-+ +-||||+-
T Consensus 16 lkkq~lc~kls-~~~ls~~er~qi~~eidnyeyilnlvemnhye 58 (61)
T PF13035_consen 16 LKKQQLCKKLS-SMHLSEKEREQIKLEIDNYEYILNLVEMNHYE 58 (61)
T ss_pred HHHHHHHHHHh-hcccCHHHHHHHHhhhhhHHHHHHHHHHhccc
Confidence 34556777776 67888999999999999998875 78999974
No 252
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=33.75 E-value=27 Score=29.12 Aligned_cols=35 Identities=9% Similarity=-0.048 Sum_probs=28.1
Q ss_pred ccccccccccchhhhhccccceE-ecCCCCcccccC
Q psy17920 33 ETESCSRFIHGLDSAVKSLVAVV-ADQTKKCQTLYK 67 (393)
Q Consensus 33 ~~~~~s~f~~~~~~~~~~~~~~v-~rry~df~~l~~ 67 (393)
...+||||..++..+...+++.+ .+++|.+.|+.+
T Consensus 38 v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~~~ 73 (114)
T cd07300 38 IERRYSDFLKLHQELLSDFSEELEDVVFPKKKLTGN 73 (114)
T ss_pred EEeccHhHHHHHHHHHHHccccCCCCCCCCCcccCC
Confidence 44579999999999988887754 678999988765
No 253
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=32.05 E-value=4.3e+02 Score=24.71 Aligned_cols=37 Identities=8% Similarity=0.127 Sum_probs=21.0
Q ss_pred HHHHHHHHhcc------chhHHHHHHHHHHHHHHHHHHHHhcC
Q psy17920 187 LYKREYQKIGI------DRSHLRDALKKTGDTYNELGKLFEEQ 223 (393)
Q Consensus 187 ~~~~~~~~lg~------d~s~L~~al~~lg~~~~~i~~~~~~Q 223 (393)
.|++.+..|+. +..+|..++..+-...+.++..+..-
T Consensus 37 eYak~L~kLak~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~l 79 (239)
T cd07647 37 DYGKALLKLSKSAGPGDEIGTLKSSWDSLRKETENVANAHIQL 79 (239)
T ss_pred HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555 12347777777776666666655443
No 254
>KOG2150|consensus
Probab=32.04 E-value=6.7e+02 Score=26.96 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=33.6
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhhhhccCCHHHHHHHhhc
Q psy17920 283 TDTVSYA---LLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMTTENKMEANRLQEVLKR 351 (393)
Q Consensus 283 ~e~is~~---v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~r 351 (393)
.+-|+++ +.+.++.|+. .-++.+|.-|.=.....+-..+ +.+..-|++...+.++.-
T Consensus 124 ~~wi~~~ideLe~q~d~~ea-----------~~~e~~~erh~~H~~~lEliLr-~L~N~E~~pe~v~~vqDd 183 (575)
T KOG2150|consen 124 MDWISNQIDELERQVDSFEA-----------EELERFIERHRWHQQKLELILR-LLDNDELDPEAVNKVQDD 183 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH-HhhccccCHHHHhhhhHH
Confidence 4444443 4455566655 5566666666555555554444 444777888888777654
No 255
>KOG2527|consensus
Probab=31.94 E-value=14 Score=31.77 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=42.6
Q ss_pred cccccccchhhhhccccceEecCCCCcccccC-Cc-----cccccCCChHHHH--------HHHHHHHHHHHHHhcCC
Q psy17920 36 SCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK-RE-----YQKIGRYEEQFIE--------HRKNQLQSFVDYVCRHP 99 (393)
Q Consensus 36 ~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~-P~-----K~~~g~~~~~Fie--------~Rr~~L~~fl~rv~~HP 99 (393)
+||||+.+.+.+-.+-.-+|+|.+|.+.|++. |- +.-.| =+.|+. .-.+.|..||+-...-|
T Consensus 59 RYsdFewlr~~Ler~s~kvvvP~LPgK~~~~~~~fre~IEeRrqg--Le~fl~kVaghpL~q~~~~Lh~Flq~~~~~~ 134 (144)
T KOG2527|consen 59 RYSDFEWLRKRLERESGKVVVPELPGKALFRQLPFREFIEERRQG--LEVFLRKVAGHPLLQNERCLHLFLQSELIDK 134 (144)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCcHHHHhcCchHHHHHHHHHH--HHHHHHHHhCchhhhccHHHHHHHHhhhhcc
Confidence 69999999998887655689999999999998 52 22222 122332 24568888988655444
No 256
>KOG3410|consensus
Probab=30.74 E-value=1.1e+02 Score=25.79 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=33.3
Q ss_pred hccCCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy17920 337 ENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKS 380 (393)
Q Consensus 337 e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~ 380 (393)
+|+|+.+++.-...+....--=++-|.+--|.+||.+|+..+.+
T Consensus 63 d~k~T~Ae~~~e~~qe~~~~kril~~a~ktHk~rve~~n~~Ld~ 106 (120)
T KOG3410|consen 63 DGKFTKAELRFEKVQEKRPCKRILKEAGKTHKERVEKFNRHLDE 106 (120)
T ss_pred cccccHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 46677777766666666666678889999999999999976543
No 257
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=30.27 E-value=4.7e+02 Score=24.62 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhcc---c---hhHHHHHHHHHHHHHHHHHH
Q psy17920 158 SCSRFIHGLDSAVKSLVAVVADQTKKCQT------LYKREYQKIGI---D---RSHLRDALKKTGDTYNELGK 218 (393)
Q Consensus 158 ~f~~~l~~L~~~l~~L~~~~~~l~kk~~~------~~~~~~~~lg~---d---~s~L~~al~~lg~~~~~i~~ 218 (393)
.++.-+..+..+|.+|........+...+ .|-....++|. . +.+|..+|-+++++...+..
T Consensus 10 ~ykni~eqfnP~lrnLv~lGk~Y~KA~~a~~~A~~~y~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~ 82 (226)
T cd07645 10 TYKNVMEQFNPGLRNLINLGKNYEKAVNAMVLAGKAYYDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLND 82 (226)
T ss_pred HHHHHHHhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 33444555666677776666554443211 23334455555 1 22599999999998887764
No 258
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.22 E-value=2.9e+02 Score=22.14 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=34.2
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy17920 150 FNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTL----YKREYQKIGIDRSHLRDALKKTGDTYNELGKLFEE 222 (393)
Q Consensus 150 ~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~----~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~~ 222 (393)
.++......+......+...|..|......|...-.+. |...|..+-.....|.++|..+++.+...++.+.+
T Consensus 10 ~~~~~~A~~~~~~~~~i~~~l~~l~s~~~~l~~~W~G~a~~~f~~~~~~w~~~~~~l~~~l~~i~~~l~~~a~~~~~ 86 (97)
T COG4842 10 EEMRATAKDYAGSSGEIQALLQDLASEIAKLQSAWEGDAAEAFQSEQQQWNQAATELNEALEQLADALRHAADAFEE 86 (97)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444433221122 22223222222345777777777777777765543
No 259
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.61 E-value=4.5e+02 Score=24.22 Aligned_cols=36 Identities=6% Similarity=0.298 Sum_probs=29.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 356 SYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 356 s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
+.=...-||-.+..+-.+|...|-.|+..|+.||+.
T Consensus 156 ~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~q 191 (202)
T cd07606 156 RFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKS 191 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444577788889999999999999999999975
No 260
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=28.39 E-value=4.8e+02 Score=24.09 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHh
Q psy17920 204 DALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKM 265 (393)
Q Consensus 204 ~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl 265 (393)
++|+.+...+..-.+-...+...--....+.=.+|+.-+...+-+....=..+.|++++++.
T Consensus 19 r~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~~ 80 (196)
T PF15272_consen 19 RALSDLNQDLRERDERYELQETSYKEKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKKS 80 (196)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333222222333444455555666666666666667788777653
No 261
>PLN02866 phospholipase D
Probab=28.31 E-value=39 Score=38.63 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=35.7
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 73 IGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 73 ~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
.|| .+....+++.+||.|||.+..++.+..+..+..||+.+
T Consensus 131 ~~~-~~~~~~r~~~~~~~yL~~~l~~~~~~n~~~~~~FlevS 171 (1068)
T PLN02866 131 LGR-QQSISDRAKVAMQEYLNHFLGNLDIVNSREVCKFLEVS 171 (1068)
T ss_pred cCC-CccccHHHHHHHHHHHHHHhccchhcCCHhhhhheeec
Confidence 355 45677788888999999999999999999999999987
No 262
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=28.15 E-value=28 Score=28.92 Aligned_cols=76 Identities=11% Similarity=0.061 Sum_probs=48.5
Q ss_pred eEEEee--CC---ccccccccccccchhhhhccccceEecCCCCcccccC-Ccccccc-CCChHHHHHHHHHHHHHHHHH
Q psy17920 23 LSISHF--NL---EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK-REYQKIG-RYEEQFIEHRKNQLQSFVDYV 95 (393)
Q Consensus 23 ~~i~v~--~p---~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~-P~K~~~g-~~~~~Fie~Rr~~L~~fl~rv 95 (393)
|.|.|. ++ -..-.+|+||..++..+...+|....+++|...|+.. ..+.+.- | -..++.=.++|-.--..|
T Consensus 21 Y~I~V~~~~~~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~~~~~~~v~e~R--~~~L~~Yl~~Ll~~~~~i 98 (111)
T cd06884 21 YVVEVTRENQASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVGRSNIKSVAEKR--KQDIQQFLNSLFKMAEEV 98 (111)
T ss_pred EEEEEEEcCCCceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeecCCcchHHHHHH--HHHHHHHHHHHHcCCHHH
Confidence 667774 33 4444578999999999999999988899999977632 2222221 2 234555555554433455
Q ss_pred hcCCC
Q psy17920 96 CRHPV 100 (393)
Q Consensus 96 ~~HPv 100 (393)
++++.
T Consensus 99 s~~~~ 103 (111)
T cd06884 99 SHSDL 103 (111)
T ss_pred hcChH
Confidence 55553
No 263
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=26.52 E-value=5.3e+02 Score=24.00 Aligned_cols=39 Identities=10% Similarity=-0.028 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHh
Q psy17920 202 LRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKG 240 (393)
Q Consensus 202 L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ 240 (393)
+..++..+-...+.+|..+..-++.-...+.++|+.+..
T Consensus 63 ~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~ 101 (251)
T cd07653 63 SVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLIS 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666655544433322334444444433
No 264
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=24.97 E-value=41 Score=28.46 Aligned_cols=45 Identities=4% Similarity=-0.155 Sum_probs=33.6
Q ss_pred eEEEeeC--Cc--cccccccccccchhhhhccccc--------eEecCCCCcccccC
Q psy17920 23 LSISHFN--LE--QETESCSRFIHGLDSAVKSLVA--------VVADQTKKCQTLYK 67 (393)
Q Consensus 23 ~~i~v~~--p~--k~~~~~s~f~~~~~~~~~~~~~--------~v~rry~df~~l~~ 67 (393)
|.|.|.. .. ....+||+|..+...+...+|. +++|.+|.+.|+..
T Consensus 23 Y~I~v~~~~~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~~~~ 79 (123)
T cd06882 23 FVIEVKTKGGSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIYVGR 79 (123)
T ss_pred EEEEEEEcCCCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCeecCc
Confidence 5677753 32 2234689999999999988874 58999999999853
No 265
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.31 E-value=8.9e+02 Score=25.88 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 274 NRLQEVLKRTDTVSYALLGEINHFHQE 300 (393)
Q Consensus 274 ~~ve~~~~~~e~is~~v~~E~~rF~~e 300 (393)
..++.+..+.+.+-..+..|+.-.+..
T Consensus 278 ~~~~~i~~~Id~lYd~le~E~~Ak~~V 304 (560)
T PF06160_consen 278 EENEEIEERIDQLYDILEKEVEAKKYV 304 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777765544
No 266
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=23.17 E-value=46 Score=27.72 Aligned_cols=44 Identities=5% Similarity=-0.171 Sum_probs=34.5
Q ss_pred eEEEeeC--C---ccccccccccccchhhhhccccceEecCCCCccccc
Q psy17920 23 LSISHFN--L---EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 23 ~~i~v~~--p---~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
|.|.|.- . ...-.+|++|..+++.+...||.+.+|.+|...|+.
T Consensus 19 Y~i~V~~~~~~~~~~I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~g 67 (109)
T cd07289 19 YVVRILREGQIEPSFVFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLG 67 (109)
T ss_pred EEEEEEECCCceeEEEEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeC
Confidence 5666643 2 223346899999999999999999999999999984
No 267
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=23.04 E-value=49 Score=27.53 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=13.5
Q ss_pred ceEecCCCCcccccC
Q psy17920 53 AVVADQTKKCQTLYK 67 (393)
Q Consensus 53 ~~v~rry~df~~l~~ 67 (393)
..|.|||+||.-||.
T Consensus 32 ~~I~RrY~eF~~Lh~ 46 (109)
T cd07290 32 TFVQRTFEEFQELHN 46 (109)
T ss_pred EEEEeeHHHHHHHHH
Confidence 469999999999987
No 268
>smart00721 BAR BAR domain.
Probab=22.51 E-value=5.9e+02 Score=23.10 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=45.1
Q ss_pred HHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 342 ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 342 ~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
.++++..+..-+.+.--+..||..|.+.++.-|...+..|+..|..||..+
T Consensus 176 e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~ 226 (239)
T smart00721 176 EEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRES 226 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 455677777888888899999999999999999999999999999999864
No 269
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.43 E-value=7.6e+02 Score=26.52 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 305 INAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 305 fk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
.+++...++...+.=|-..+..|....+.+.
T Consensus 278 ~~~~~~~L~g~~i~~~~~~~~~~y~~~~p~i 308 (555)
T TIGR03545 278 LKNFAVDLFGPEIRKYLQKFLKYYDQAEPLL 308 (555)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHhh
Confidence 3344444444445444445555555444333
No 270
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=20.89 E-value=2.7e+02 Score=22.87 Aligned_cols=45 Identities=13% Similarity=0.301 Sum_probs=34.1
Q ss_pred HHHhHHHHHh--HHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHH
Q psy17920 317 INFYQKDILN--KKREYEKMTTENKMEANRLQEVLKRTDTVSYALLG 361 (393)
Q Consensus 317 i~~~qk~a~~--~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~a 361 (393)
-++|.+.... .+++...+...|++|+..+..|-..-|-..--+++
T Consensus 5 YElYRrs~ig~~L~dalD~lis~g~isp~lam~vLetFDksv~e~l~ 51 (113)
T COG5123 5 YELYRRSMIGKVLEDALDELISAGVISPNLAMHVLETFDKSVPEVLN 51 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhhhHHHHHHH
Confidence 3566666655 77889999999999999999998877765444443
No 271
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=20.17 E-value=39 Score=28.50 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=10.3
Q ss_pred eEecCCCCcccccC
Q psy17920 54 VVADQTKKCQTLYK 67 (393)
Q Consensus 54 ~v~rry~df~~l~~ 67 (393)
.|.|||+||.-||.
T Consensus 34 ~v~RrYsdF~~L~~ 47 (118)
T cd06887 34 LVYRRFTEIYEFHK 47 (118)
T ss_pred EEEeeHHHHHHHHH
Confidence 57777777777765
No 272
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=20.01 E-value=7.1e+02 Score=23.11 Aligned_cols=37 Identities=0% Similarity=0.031 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy17920 289 ALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDIL 325 (393)
Q Consensus 289 ~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~ 325 (393)
.+...++.++.+|...|+++|..|++.....+..+..
T Consensus 205 ~~~~~~q~le~~ri~~~k~~l~~~~~~~~~~~~~~~~ 241 (251)
T cd07653 205 QIFDKLQELDEKRINRTVELLLQAAEIERKVIPIIAK 241 (251)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4555677788888888888888888777666555443
Done!