Query psy17920
Match_columns 393
No_of_seqs 197 out of 727
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:32:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4akv_A Sorting nexin-33; trans 100.0 1.4E-56 4.7E-61 449.5 28.7 321 10-335 29-384 (386)
2 3dyt_A Sorting nexin-9; 3-heli 100.0 2.3E-56 7.8E-61 445.5 27.9 320 11-335 9-364 (366)
3 2csk_A Sorting nexin 12; SNX12 99.8 4.2E-20 1.4E-24 160.8 0.2 107 19-126 7-143 (146)
4 3hpc_X SNX5 protein; sprting n 99.8 6.4E-20 2.2E-24 161.8 -0.3 97 19-116 8-152 (161)
5 3iq2_A Sorting nexin-7; SNX7, 99.7 1.3E-19 4.5E-24 156.3 0.8 93 21-114 7-124 (138)
6 2i4k_A Sorting nexin-1, SNX1; 99.7 4.4E-18 1.5E-22 144.4 -0.5 92 22-114 3-127 (128)
7 1ocs_A Sorting nexin GRD19; so 99.7 4.5E-18 1.6E-22 150.5 -0.4 95 19-114 32-158 (162)
8 1xte_A Serine/threonine-protei 99.6 1.6E-17 5.4E-22 145.8 -0.2 102 18-120 3-120 (154)
9 1kmd_A VAM7P, vacuolar morphog 99.6 4.5E-17 1.5E-21 136.4 0.1 89 19-114 2-114 (117)
10 3lui_A Sorting nexin-17, SNX17 99.6 4E-17 1.4E-21 136.3 -2.0 88 21-114 2-108 (115)
11 3p0c_A Nischarin; structural g 99.5 1.3E-15 4.4E-20 129.8 -0.3 99 13-114 13-124 (130)
12 2v14_A Kinesin-like motor prot 99.4 3E-14 1E-18 122.0 2.0 87 21-108 4-107 (134)
13 1h6h_A Neutrophil cytosol fact 99.4 3.5E-14 1.2E-18 122.8 -0.0 96 17-114 15-135 (143)
14 4akv_A Sorting nexin-33; trans 99.4 9.8E-11 3.4E-15 117.0 24.3 70 323-392 303-372 (386)
15 2ar5_A Phosphoinositide 3-kina 99.4 5.4E-14 1.8E-18 118.3 0.4 93 22-114 5-115 (121)
16 3dyt_A Sorting nexin-9; 3-heli 99.3 1.2E-10 4.2E-15 115.5 23.1 70 323-392 283-352 (366)
17 4az9_A Sorting nexin-24; prote 99.3 1.9E-13 6.3E-18 116.3 1.9 92 20-114 20-125 (129)
18 2ett_A Sorting nexin-22; PX do 99.2 4.5E-13 1.5E-17 113.7 -1.0 60 53-114 46-116 (128)
19 2iwl_X Phosphatidylinositol-4- 99.2 3.2E-13 1.1E-17 116.4 -3.4 97 18-114 16-130 (140)
20 1kq6_A NCF-1, P47PHOX, neutrop 99.2 2.6E-12 9E-17 110.7 0.9 91 22-114 6-121 (141)
21 1uru_A Amphiphysin; endocytosi 98.7 4E-06 1.4E-10 77.7 23.7 181 152-335 35-234 (244)
22 2fic_A Bridging integrator 1; 98.7 7.1E-06 2.4E-10 76.6 23.3 179 153-335 51-247 (251)
23 2l73_A NADPH oxidase organizer 98.5 4.2E-09 1.4E-13 91.5 -2.2 92 23-114 9-127 (149)
24 2dyb_A Neutrophil cytosol fact 98.4 2.5E-08 8.5E-13 97.9 -0.2 96 18-114 19-138 (341)
25 2v6v_A BUD emergence protein 1 98.1 9.9E-07 3.4E-11 77.0 3.0 60 53-114 47-135 (156)
26 1zww_A SH3-containing GRB2-lik 97.8 0.0028 9.7E-08 59.2 21.3 133 199-335 107-241 (256)
27 2z0v_A SH3-containing GRB2-lik 97.8 0.0023 7.9E-08 59.3 20.4 143 188-335 77-225 (240)
28 4avm_A Bridging integrator 2; 97.5 0.054 1.9E-06 49.9 25.0 106 230-335 112-228 (237)
29 4a3a_A Amphiphysin; structural 97.5 0.042 1.5E-06 50.9 23.6 106 230-335 117-233 (243)
30 2q12_A DIP13 alpha, DCC-intera 97.4 0.045 1.5E-06 51.0 22.3 175 153-328 27-219 (265)
31 2wwe_A Phosphoinositide-3-kina 97.3 1.8E-05 6.1E-10 66.0 -2.3 58 54-113 54-126 (127)
32 2q13_A DCC-interacting protein 97.2 0.045 1.5E-06 53.9 21.8 175 153-328 27-219 (385)
33 4h8s_A DCC-interacting protein 96.5 0.69 2.4E-05 45.6 24.3 56 274-329 188-243 (407)
34 1i4d_A Arfaptin 2, partner of 95.2 1.8 6.1E-05 39.4 22.6 167 150-331 7-203 (224)
35 3iq2_A Sorting nexin-7; SNX7, 92.3 0.042 1.4E-06 46.4 1.4 63 4-66 5-80 (138)
36 2fic_A Bridging integrator 1; 90.4 10 0.00034 34.4 15.9 50 343-392 186-235 (251)
37 3hpc_X SNX5 protein; sprting n 86.3 0.19 6.4E-06 43.6 0.9 62 4-65 8-80 (161)
38 4h8s_A DCC-interacting protein 82.9 36 0.0012 33.0 21.0 29 362-390 207-235 (407)
39 2csk_A Sorting nexin 12; SNX12 82.6 0.52 1.8E-05 39.8 2.0 62 3-65 6-80 (146)
40 2i4k_A Sorting nexin-1, SNX1; 81.5 0.6 2.1E-05 38.1 2.0 45 22-66 23-77 (128)
41 3lui_A Sorting nexin-17, SNX17 78.5 0.39 1.3E-05 38.9 -0.2 45 22-66 25-69 (115)
42 2q13_A DCC-interacting protein 75.5 59 0.002 31.2 20.9 30 362-391 184-213 (385)
43 2vs0_A Virulence factor ESXA; 64.3 41 0.0014 25.0 8.7 77 147-223 6-86 (97)
44 3zbh_A ESXA; unknown function, 63.5 44 0.0015 24.9 10.2 76 147-222 9-88 (99)
45 1uru_A Amphiphysin; endocytosi 63.5 79 0.0027 27.9 20.7 57 336-392 164-222 (244)
46 1kmd_A VAM7P, vacuolar morphog 60.2 2.9 0.0001 33.6 1.2 42 22-65 21-63 (117)
47 2iwl_X Phosphatidylinositol-4- 59.7 2.4 8.1E-05 35.4 0.6 45 22-66 39-88 (140)
48 2v14_A Kinesin-like motor prot 59.5 2.5 8.6E-05 35.0 0.7 76 23-103 26-108 (134)
49 1zww_A SH3-containing GRB2-lik 57.5 1.1E+02 0.0037 27.6 14.1 52 339-391 177-228 (256)
50 3gwk_C SAG1039, putative uncha 57.4 58 0.002 24.4 8.6 75 147-221 8-86 (98)
51 1ocs_A Sorting nexin GRD19; so 56.7 3.1 0.00011 35.6 0.9 45 22-66 59-116 (162)
52 3plt_A Sphingolipid long chain 56.1 1.2E+02 0.004 27.5 22.9 125 188-327 49-184 (234)
53 2ar5_A Phosphoinositide 3-kina 55.1 3.3 0.00011 33.6 0.7 44 23-66 25-73 (121)
54 3ogl_Q JAZ1 incomplete degron 55.0 7.1 0.00024 21.8 1.8 12 83-94 5-16 (21)
55 3haj_A Human pacsin2 F-BAR; pa 49.4 2.1E+02 0.0071 28.4 23.2 40 201-240 78-117 (486)
56 2z0v_A SH3-containing GRB2-lik 49.1 1.5E+02 0.005 26.5 13.9 51 340-391 162-212 (240)
57 4ioe_A Secreted protein ESXB; 47.9 80 0.0027 23.2 9.2 74 147-220 9-86 (93)
58 3ogk_Q JAZ1 incomplete degron 47.0 6.3 0.00022 22.3 0.8 10 84-93 1-10 (22)
59 2q12_A DIP13 alpha, DCC-intera 44.9 1.7E+02 0.0059 26.2 22.9 49 343-391 165-213 (265)
60 1xte_A Serine/threonine-protei 41.2 7.5 0.00026 32.8 0.8 44 22-66 27-73 (154)
61 3fav_B ESAT-6, 6 kDa early sec 40.2 71 0.0024 23.7 6.3 74 148-221 6-83 (94)
62 4i0x_B ESAT-6-like protein MAB 39.9 61 0.0021 24.9 6.0 73 148-220 12-90 (103)
63 3p0c_A Nischarin; structural g 38.1 11 0.00039 30.8 1.4 46 21-67 37-85 (130)
64 1h6h_A Neutrophil cytosol fact 35.8 9.3 0.00032 31.6 0.5 45 23-67 40-96 (143)
65 2x3v_A Syndapin I, protein kin 33.5 2.9E+02 0.0099 25.5 21.5 41 200-240 75-115 (337)
66 3abh_A Pacsin2, protein kinase 32.4 2.9E+02 0.01 25.2 20.6 40 200-239 84-123 (312)
67 3fav_A ESAT-6-like protein ESX 32.0 90 0.0031 23.5 5.8 76 148-223 8-87 (101)
68 1w53_A Phosphoserine phosphata 25.2 1.6E+02 0.0056 22.2 5.8 47 302-352 8-54 (84)
69 3m3w_A Pacsin3, protein kinase 24.2 4.3E+02 0.015 24.4 20.4 40 200-239 75-114 (320)
70 2v0o_A FCHO2, FCH domain only 24.0 3.7E+02 0.013 23.7 20.8 22 293-314 203-224 (276)
71 4i0x_A ESAT-6-like protein MAB 23.6 2.3E+02 0.0077 21.1 6.6 73 150-222 3-79 (94)
72 1kq6_A NCF-1, P47PHOX, neutrop 23.2 18 0.00062 29.8 0.1 45 23-67 26-83 (141)
73 3aco_A Pacsin2, protein kinase 20.9 5E+02 0.017 24.0 18.9 40 200-239 84-123 (350)
74 3uun_A Dystrophin; triple heli 20.4 2.7E+02 0.0094 20.8 7.9 36 320-355 55-90 (119)
75 3trt_A Vimentin; cytoskeleton, 20.4 2.4E+02 0.0084 20.2 10.1 39 274-312 9-47 (77)
No 1
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-56 Score=449.53 Aligned_cols=321 Identities=31% Similarity=0.534 Sum_probs=284.2
Q ss_pred cccccccccCCCceEEEeeCCccccccccccccchhhhhcc------ccceEecCCCCcccccC--------------Cc
Q psy17920 10 IVELIGLKVMDHILSISHFNLEQETESCSRFIHGLDSAVKS------LVAVVADQTKKCQTLYK--------------RE 69 (393)
Q Consensus 10 ~~~~~~~~~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~------~~~~v~rry~df~~l~~--------------P~ 69 (393)
...||.|++....|+|+|+||+|+++. .|++.|+.+ ...+|.|||+||.|||+ |+
T Consensus 29 ~~~~~~w~~~~~~~~i~V~dp~k~~~~-----~g~~~y~~Y~I~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~ 103 (386)
T 4akv_A 29 GPRGPQWKANPHPFACSVEDPTKQTKF-----KGIKSYISYKLTPTHAASPVYRRYKHFDWLYNRLLHKFTVISVPHLPE 103 (386)
T ss_dssp CTTSSEECCCSSCCCEEEECC-----------------CCEEEEETTSSSCEEECHHHHHHHHHHHHHHCSSSCCCCCCC
T ss_pred cCCCceeecCCCCeEEEEcCceEecCC-----CCCcCeEEEEEEEEeCCeEEEcCHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 368999999999999999999999831 144555442 23579999999999999 89
Q ss_pred cccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccccchhhHhhhhhhhhccccccchhhhhccCCCCCCCc
Q psy17920 70 YQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLGPSLFLAIETPERSISH 149 (393)
Q Consensus 70 K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~e~~wk~~~~~ae~~~~~g~~~~~~v~~~~~~~~~ 149 (393)
|.+.|+|+++|||+||++|++||++|+.||+|+.|+.|+.||+++++..|+..+++++++++.|++|+.++..|..++++
T Consensus 104 K~~~g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~~~~~w~~~~r~~~~~~~~g~~~~~~~~~~~~~~~~ 183 (386)
T 4akv_A 104 KQATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEKDEMVGASFLLTFQIPTEHQDL 183 (386)
T ss_dssp CC------CCTTTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSCCCSHHHHHHHHHHHTCSCCGGGGGGTSBCCSCCCCH
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCCCChhhHHHhhhhccCCCccchHHHHHhcCCccccCh
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999888878889
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------hhHHHHHHHHHHHHHH
Q psy17920 150 FNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID---------------RSHLRDALKKTGDTYN 214 (393)
Q Consensus 150 ~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d---------------~s~L~~al~~lg~~~~ 214 (393)
.++++.++.++.|++.|+.++.+|.+.+.++++++.+.++++|+++|.. .+.|++||..+|++++
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~r~~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~~~~e 263 (386)
T 4akv_A 184 QDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYE 263 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998777788888776661 2359999999999999
Q ss_pred HHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 215 ELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEI 294 (393)
Q Consensus 215 ~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~ 294 (393)
.+++++.+|+..|+.+|.|+|++|.+++.++|++++.|+.+|+|+++++|+..+||+++.++++++++|+.|++++++||
T Consensus 264 ~i~~l~~~Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~k~~ea~kl~~~~K~~~~~~~e~~~r~e~IS~~~~~El 343 (386)
T 4akv_A 264 AIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRMVQDEADGIRRRCRVVGFALQAEM 343 (386)
T ss_dssp HHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 295 NHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 295 ~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
+||+.+|+.||+.+|++|++.||+||++++..|....+.+.
T Consensus 344 ~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~~l~~f~ 384 (386)
T 4akv_A 344 NHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRMYD 384 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999987764
No 2
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=100.00 E-value=2.3e-56 Score=445.52 Aligned_cols=320 Identities=32% Similarity=0.556 Sum_probs=283.6
Q ss_pred ccccccccCCCceEEEeeCCccccccccccccchhhhhc------cccceEecCCCCcccccC---------------Cc
Q psy17920 11 VELIGLKVMDHILSISHFNLEQETESCSRFIHGLDSAVK------SLVAVVADQTKKCQTLYK---------------RE 69 (393)
Q Consensus 11 ~~~~~~~~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~------~~~~~v~rry~df~~l~~---------------P~ 69 (393)
..||.|++..+.|+|+|+||+|++.. .|++.|+. ....+|.|||+||.|||+ |+
T Consensus 9 ~~~~~w~~~~~~~~i~V~dp~k~~~~-----~g~~~y~~Y~I~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~ 83 (366)
T 3dyt_A 9 DYGPMWVYPTSTFDCVVADPRKGSKM-----YGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPD 83 (366)
T ss_dssp TTEEEECCCSSCCCEEEECGGGSSSC-----CCCCSSCEEEEEETTCSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC-
T ss_pred CCCCcccCCCCCeEEEEcCceeecCC-----CCCcCeEEEEEEEecCcEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCcC
Confidence 37999999999999999999999831 13344443 223579999999999998 89
Q ss_pred cccccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccccchhhHhhhhhhhhccccccchhhhhccCCCCCCCc
Q psy17920 70 YQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDNLLGPSLFLAIETPERSISH 149 (393)
Q Consensus 70 K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~e~~wk~~~~~ae~~~~~g~~~~~~v~~~~~~~~~ 149 (393)
|.+.|+|+++||++||++|++||++|+.||+|+.|+.|+.||+++++..|+..++++++++..|++|++++.+|..+.++
T Consensus 84 K~~~g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~~~~~~w~~~~r~~~~~~~~g~~~~~~~~~~~~~~~~ 163 (366)
T 3dyt_A 84 KQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDL 163 (366)
T ss_dssp ----------CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHCSSHHHHHHHHHHHHTCCCCGGGGGGGEEESSCCCCH
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCCCchhhHHHHhhhhccCcccchHHHHHhcCCCCCCCH
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999888878888
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------hhHHHHHHHHHHHHHH
Q psy17920 150 FNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGID---------------RSHLRDALKKTGDTYN 214 (393)
Q Consensus 150 ~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~d---------------~s~L~~al~~lg~~~~ 214 (393)
.+++..++.++.|++.|+.++.+|.+++.++++++...++++|..+|.. ++.|++||..+|++++
T Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~~ 243 (366)
T 3dyt_A 164 VEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYE 243 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988777777777766661 2359999999999999
Q ss_pred HHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 215 ELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEI 294 (393)
Q Consensus 215 ~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~erl~~e~k~~~~~ve~~~~~~e~is~~v~~E~ 294 (393)
.+++++++|+..|+.+|.|+|++|.++++++|++++.|..+|+|+++++|+..+||++..++++++.+|+.|++++++||
T Consensus 244 ~i~~l~~~qa~~d~~~l~E~L~~Y~~~l~avKd~l~~r~~aL~k~~e~~kl~~~~K~~~~~~~~~~~r~e~is~~~~~El 323 (366)
T 3dyt_A 244 EIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEM 323 (366)
T ss_dssp HHHHHHHHSGGGTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 295 NHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 295 ~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
+||+.+|+.||+.+|++|++.||+||++++..|....+.+.
T Consensus 324 ~rF~~~r~~Dfk~~l~~yl~~qi~~~k~~~~~w~~~l~~~~ 364 (366)
T 3dyt_A 324 NHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFP 364 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988764
No 3
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-20 Score=160.80 Aligned_cols=107 Identities=21% Similarity=0.352 Sum_probs=86.3
Q ss_pred CCCceEEEeeCCccccccccccccchhhhhc-c---cc---ceEecCCCCcccccC-------------Cccccc-----
Q psy17920 19 MDHILSISHFNLEQETESCSRFIHGLDSAVK-S---LV---AVVADQTKKCQTLYK-------------REYQKI----- 73 (393)
Q Consensus 19 ~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~-~---~~---~~v~rry~df~~l~~-------------P~K~~~----- 73 (393)
.++.++|+|+||++++++.+.|+. +...+. . +. ..|.|||+||.|||+ |+|.+.
T Consensus 7 ~~~~l~i~V~dp~~~~~g~~~yv~-Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~iP~lP~K~~~~~~~~ 85 (146)
T 2csk_A 7 GSNFLEIDIFNPQTVGVGRARFTT-YEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPF 85 (146)
T ss_dssp CSCCCEEEEEEEEEESSSSSCEEE-EEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSSSSCCCCCCSCCCCCCSSTT
T ss_pred CCCcEEEEEcCceEecCCCCCEEE-EEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhccCCcCCCCCCCchhhcccc
Confidence 456799999999999885443321 111111 1 11 379999999999998 899886
Q ss_pred ----cCCChHHHHHHHHHHHHHHHHHhcCCCccccccccccccccc-hhhHhhhhhhh
Q psy17920 74 ----GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTD-EKRWKAGKRMA 126 (393)
Q Consensus 74 ----g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~-e~~wk~~~~~a 126 (393)
|+++++|||+||++||+||++|+.||+|+.|+.|+.||+.++ ++.|+.+++++
T Consensus 86 ~~~~g~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~~~~~~~g~~~~ 143 (146)
T 2csk_A 86 RGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPGKSGP 143 (146)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCSSCCSSCCCCSCSS
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCcHHHhhcCCCchhhhhccCccCC
Confidence 789999999999999999999999999999999999999873 67788877664
No 4
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=99.75 E-value=6.4e-20 Score=161.75 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=73.3
Q ss_pred CCCceEEEeeCCccccccccccccchhhhhccc---cceEecCCCCcccccC----------------Ccccccc-----
Q psy17920 19 MDHILSISHFNLEQETESCSRFIHGLDSAVKSL---VAVVADQTKKCQTLYK----------------REYQKIG----- 74 (393)
Q Consensus 19 ~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~---~~~v~rry~df~~l~~----------------P~K~~~g----- 74 (393)
.++.|+|+|+||.++++ |-.|.....+-...+ +.+|.|||+||.|||+ |+|.+.|
T Consensus 8 ~~~~l~i~V~dp~~~~~-~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~~~~~K 86 (161)
T 3hpc_X 8 VDPSLQIDIPDALSERD-KVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREK 86 (161)
T ss_dssp CSCSEEEEEEEEEEETT-EEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCHHHHHH
T ss_pred CCCeEEEEECCCeEecC-CEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccccchhhh
Confidence 45679999999999998 322221111111112 2379999999999998 8998753
Q ss_pred ---------C------------CChHHHHHHH---HHHHHHHHHHhcCCCccccccccccccccch
Q psy17920 75 ---------R------------YEEQFIEHRK---NQLQSFVDYVCRHPVLCRSPVWQHFITCTDE 116 (393)
Q Consensus 75 ---------~------------~~~~Fie~Rr---~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~e 116 (393)
+ |+++|||.|| .+||+||++|+.||+|+.|+.|+.||+++++
T Consensus 87 ~~~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~d 152 (161)
T 3hpc_X 87 MQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQD 152 (161)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCSC
T ss_pred hhcccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCcc
Confidence 2 5678999754 4599999999999999999999999999843
No 5
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=99.74 E-value=1.3e-19 Score=156.25 Aligned_cols=93 Identities=24% Similarity=0.294 Sum_probs=74.7
Q ss_pred CceEEEeeCCccccccccccccchhhhhc-ccc------ceEecCCCCcccccC--------------Cccccc----cC
Q psy17920 21 HILSISHFNLEQETESCSRFIHGLDSAVK-SLV------AVVADQTKKCQTLYK--------------REYQKI----GR 75 (393)
Q Consensus 21 ~~~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~~------~~v~rry~df~~l~~--------------P~K~~~----g~ 75 (393)
.+++|+|+||+++|++.+.|+ .+...+. ..| ..|.|||+||.||++ |+|.+. |+
T Consensus 7 ~~l~i~V~dp~~~~~g~~~yv-~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~ 85 (138)
T 3iq2_A 7 KDLFITVDEPESHVTTIETFI-TYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVER 85 (138)
T ss_dssp CCCEEEEEEEEEEECSSCEEE-EEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCGG
T ss_pred ceEEEEECCCEEecCCCCCEE-EEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhcccccc
Confidence 469999999999998544332 1111111 112 269999999999999 899875 47
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 76 YEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 76 ~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
|+++|||+||++||.||++|+.||+|+.|+.|+.||+.+
T Consensus 86 ~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 124 (138)
T 3iq2_A 86 FNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQ 124 (138)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCHhhhcChHHHhhhCCC
Confidence 899999999999999999999999999999999999986
No 6
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.66 E-value=4.4e-18 Score=144.35 Aligned_cols=92 Identities=20% Similarity=0.365 Sum_probs=73.6
Q ss_pred ceEEEeeCCccccccccccccchhhhhc-cc------cceEecCCCCcccccC----------------CccccccC---
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVK-SL------VAVVADQTKKCQTLYK----------------REYQKIGR--- 75 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~-~~------~~~v~rry~df~~l~~----------------P~K~~~g~--- 75 (393)
+++|+|.||++++++.+.|+ .+...+. .. ...|.|||+||.|||+ |+|.+.|+
T Consensus 3 ~l~v~V~~~~~~~~g~~~~~-~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~ 81 (128)
T 2i4k_A 3 DLTVGITDPEKIGDGMNAYV-AYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 81 (128)
T ss_dssp SCCCCBCCCCBCCCSSCCCB-CCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSC
T ss_pred eEEEEECCceEecCCCcCEE-EEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhh
Confidence 47899999999998543332 1111111 11 2379999999999998 78988763
Q ss_pred -------CChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 76 -------YEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 76 -------~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
++++|||+||++||+||++|+.||+|+.|+.|+.||+.+
T Consensus 82 ~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 82 KVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127 (128)
T ss_dssp CCCSCCCSSTTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhCCC
Confidence 589999999999999999999999999999999999975
No 7
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=99.66 E-value=4.5e-18 Score=150.47 Aligned_cols=95 Identities=22% Similarity=0.337 Sum_probs=75.1
Q ss_pred CCCceEEEeeCCccc---c-ccccccccchhhhhc----ccc---ceEecCCCCcccccC-------------------C
Q psy17920 19 MDHILSISHFNLEQE---T-ESCSRFIHGLDSAVK----SLV---AVVADQTKKCQTLYK-------------------R 68 (393)
Q Consensus 19 ~~~~~~i~v~~p~k~---~-~~~s~f~~~~~~~~~----~~~---~~v~rry~df~~l~~-------------------P 68 (393)
.++.++|+|+||+++ | ++.+.|+. +...+. .++ ..|.|||+||.|||+ |
T Consensus 32 p~~~l~i~V~dp~~~~~~g~~~~~~yv~-Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP 110 (162)
T 1ocs_A 32 PENFLEIEVHNPKTHIPNGMDSKGMFTD-YEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLP 110 (162)
T ss_dssp SSCCEEEEEEEEEEECCCSTTSCCCEEE-EEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCT
T ss_pred CCCeEEEEEeCCEEeeccCCCCCCCeEE-EEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCC
Confidence 345599999999999 6 43333221 111111 122 279999999999987 8
Q ss_pred ccccc-cCCChHHHHHHHHHHHHHHHHHhcCCCccc-ccccccccccc
Q psy17920 69 EYQKI-GRYEEQFIEHRKNQLQSFVDYVCRHPVLCR-SPVWQHFITCT 114 (393)
Q Consensus 69 ~K~~~-g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~-~~~~~~FL~~~ 114 (393)
+|.+. |+|+++|||+||++||+||++|+.||+|.. |+.|+.||+.+
T Consensus 111 ~K~~~~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~ 158 (162)
T 1ocs_A 111 GKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAE 158 (162)
T ss_dssp TCCCSSCTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCS
T ss_pred CCcccccCCCHHHHHHHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCc
Confidence 99986 589999999999999999999999999998 89999999975
No 8
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.64 E-value=1.6e-17 Score=145.80 Aligned_cols=102 Identities=20% Similarity=0.300 Sum_probs=81.9
Q ss_pred cCCCceEEEeeCCccccccccccccchhhhhcc--ccceEecCCCCcccccC-------------Ccccccc-CCChHHH
Q psy17920 18 VMDHILSISHFNLEQETESCSRFIHGLDSAVKS--LVAVVADQTKKCQTLYK-------------REYQKIG-RYEEQFI 81 (393)
Q Consensus 18 ~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~--~~~~v~rry~df~~l~~-------------P~K~~~g-~~~~~Fi 81 (393)
.+.+.+.|+|.+|++++++.+.|+. +...+.. ....|.|||+||.|||+ |+|.+.| +++++||
T Consensus 3 ~~~~~~~v~I~~~~~~~~~~~~~~~-Y~I~v~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~plP~K~~~g~~~~~~~i 81 (154)
T 1xte_A 3 YKESCPSVSIPSSDEHREKKKRFTV-YKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFI 81 (154)
T ss_dssp -CCCCCEEEEEEEEEEEETTEEEEE-EEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCCSCCSSCTTCHHHH
T ss_pred CCCCCCEEEECCcEEEecCCCCEEE-EEEEEEECCEEEEEEeeHHHHHHHHHHHHHHCCCCcccCCCccccCCCCCHHHH
Confidence 4677889999999999874443321 1111111 12379999999999999 8999999 9999999
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccchhhHh
Q psy17920 82 EHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWK 120 (393)
Q Consensus 82 e~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~~e~~wk 120 (393)
|+||++|+.||++|+.||.|+.++.|+.||+.++...|+
T Consensus 82 e~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~~~~~ 120 (154)
T 1xte_A 82 KQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPRHQS 120 (154)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTSHHHHHHTTTTCGGGC-
T ss_pred HHHHHHHHHHHHHHHcChhhccChHHHHHhCCCCCcccc
Confidence 999999999999999999999999999999998655554
No 9
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.61 E-value=4.5e-17 Score=136.38 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=73.3
Q ss_pred CCCceEEEeeCCccccccccccccchhhhhccccceEecCCCCcccccC--------------Cccccc-------cCCC
Q psy17920 19 MDHILSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK--------------REYQKI-------GRYE 77 (393)
Q Consensus 19 ~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~--------------P~K~~~-------g~~~ 77 (393)
|.+.++|+|.||++ +.+|..|... + -...|.|||+||.|||+ |+|.+. |+++
T Consensus 2 m~~~~~v~I~~~~~-~~~~~~Y~I~----v--~~~~V~RRYsdF~~L~~~L~~~~~~~~P~~lP~K~~~~~~~~~~~~~~ 74 (117)
T 1kmd_A 2 MSEKLRIKVDDVKI-NPKYVLYGVS----T--PNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDD 74 (117)
T ss_dssp CCCCCCCEEEEEEE-CSSCEEEEEE----C--SSCCEEECHHHHHHHHHHHHHHHCSCCCCCCCCCCCSSCSTTCCCTTC
T ss_pred CCCCEEEEECCcee-cCCEEEEEEE----E--ceEEEEechHHHHHHHHHHHHHcCccCCCCCCCCCEecccccccCCCC
Confidence 56789999999999 3333322211 1 13479999999999998 889886 7999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCc---ccccccccccccc
Q psy17920 78 EQFIEHRKNQLQSFVDYVCRHPVL---CRSPVWQHFITCT 114 (393)
Q Consensus 78 ~~Fie~Rr~~L~~fl~rv~~HPvL---~~~~~~~~FL~~~ 114 (393)
++|||+||++||+||++|+.||+| +.|+.|+.||+.+
T Consensus 75 ~~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~ 114 (117)
T 1kmd_A 75 PEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLS 114 (117)
T ss_dssp HHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCC
Confidence 999999999999999999999987 6899999999975
No 10
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.59 E-value=4e-17 Score=136.30 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=70.2
Q ss_pred CceEEEeeCCccccccccccccchhhhhc-----cccceEecCCCCcccccC--------------CccccccCCChHHH
Q psy17920 21 HILSISHFNLEQETESCSRFIHGLDSAVK-----SLVAVVADQTKKCQTLYK--------------REYQKIGRYEEQFI 81 (393)
Q Consensus 21 ~~~~i~v~~p~k~~~~~s~f~~~~~~~~~-----~~~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fi 81 (393)
..+.|+|.++++.++. .|++.|+. ..+..|.|||+||.|||+ |+|.+.| ++++||
T Consensus 2 ~~l~v~Ip~~~~~~~~-----~g~~~y~~Y~I~v~~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~i 75 (115)
T 3lui_A 2 NAMHFSIPETESRSGD-----SGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS-LTPAEV 75 (115)
T ss_dssp ---CEEEEEEEEEC----------CCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSC-CCHHHH
T ss_pred CcEEEEECCeEEecCC-----CCCCCEEEEEEEECCeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccC-CCHHHH
Confidence 3578999999998752 12233332 223479999999999999 8999885 899999
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 82 EHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 82 e~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
|+||++||.||++|+.||.|+.|+.|+.||+.+
T Consensus 76 e~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 108 (115)
T 3lui_A 76 EQRREQLEKYMQAVRQDPLLGSSETFNSFLRRA 108 (115)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcChhhhcChHHHHHHCcC
Confidence 999999999999999999999999999999986
No 11
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.50 E-value=1.3e-15 Score=129.85 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=72.4
Q ss_pred ccccccCCCceEEEeeCCccccccccccccchhhhhccccceEecCCCCcccccC-------------CccccccCCChH
Q psy17920 13 LIGLKVMDHILSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK-------------REYQKIGRYEEQ 79 (393)
Q Consensus 13 ~~~~~~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~-------------P~K~~~g~~~~~ 79 (393)
|+.-+...+...|+|...+.. ++|..|..... .......|.|||+||.||++ |+|.+.|+++++
T Consensus 13 ~~~~~v~ips~~v~I~~~~~~-~~y~~Y~I~v~--~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~p~lP~K~~~g~~~~~ 89 (130)
T 3p0c_A 13 LGTENLYFQSMEARVVGSELV-DTYTVYIIQVT--DGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKIIGKNSRS 89 (130)
T ss_dssp ----CCCEECCEEEEEEEECS-SSSCEEEEEEE--CSSCEEEEEEEHHHHHHHHHHHHHTTSSCTTSCCCCCCCSCCCSC
T ss_pred CCCceeEeeeeEEEEEecccc-CCEEEEEEEEE--ECCeEEEEEehHHHHHHHHHHHHHHcCCCCCCCCCccccccCCHH
Confidence 444444455677777665442 22222211111 01122479999999999998 899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 80 FIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 80 Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
|||+||++|++||++|+.||.|..|+.|+.||+.+
T Consensus 90 ~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~ 124 (130)
T 3p0c_A 90 LVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFH 124 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHTSCSEECHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhCCC
Confidence 99999999999999999999999999999999976
No 12
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.42 E-value=3e-14 Score=122.03 Aligned_cols=87 Identities=13% Similarity=0.147 Sum_probs=68.5
Q ss_pred CceEEEeeCCccccccccccccchhhhhc--cccceEecCCCCcccccC--------------CccccccCCChHHHHHH
Q psy17920 21 HILSISHFNLEQETESCSRFIHGLDSAVK--SLVAVVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHR 84 (393)
Q Consensus 21 ~~~~i~v~~p~k~~~~~s~f~~~~~~~~~--~~~~~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~R 84 (393)
+.+.|+|.+++..+++.+.|+ .+...+. .....|.|||+||.|||+ |+|.+.|+++++|||+|
T Consensus 4 ~~i~VsIp~~~~~~~~~~~~~-~Y~I~v~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~~~~~~~~ie~R 82 (134)
T 2v14_A 4 DPIKISIPRYVLCGQGKDAHF-EFEVKITVLDETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERVIAER 82 (134)
T ss_dssp SCEEEEEEEEEEESSTTSCEE-EEEEEEEETTEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSSCTTSHHHHHHH
T ss_pred CCEEEEECcEEEEecCCCCEE-EEEEEEEECCeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccccCCCHHHHHHH
Confidence 468899999998876433322 1111111 122479999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHhcCCC-cccccccc
Q psy17920 85 KNQLQSFVDYVCRHPV-LCRSPVWQ 108 (393)
Q Consensus 85 r~~L~~fl~rv~~HPv-L~~~~~~~ 108 (393)
|++||.||++|+.||. |+.|+.+.
T Consensus 83 r~~Le~yL~~ll~~~~~l~~sp~~l 107 (134)
T 2v14_A 83 RSHLEKYLRDFFSVMLQSATSPLHI 107 (134)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSTTCT
T ss_pred HHHHHHHHHHHHhChHhhcCCHHHH
Confidence 9999999999999996 88888543
No 13
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.38 E-value=3.5e-14 Score=122.81 Aligned_cols=96 Identities=13% Similarity=0.143 Sum_probs=73.1
Q ss_pred ccCCCceEEEeeCCccccccccccc-cchhhhhccc-cceEecCCCCcccccC----------------------Ccccc
Q psy17920 17 KVMDHILSISHFNLEQETESCSRFI-HGLDSAVKSL-VAVVADQTKKCQTLYK----------------------REYQK 72 (393)
Q Consensus 17 ~~~~~~~~i~v~~p~k~~~~~s~f~-~~~~~~~~~~-~~~v~rry~df~~l~~----------------------P~K~~ 72 (393)
.+....+.|+|.++++... .+.++ +.+....... ...|.|||+||.|||. |+|.+
T Consensus 15 ~~~~~~i~v~I~~~e~~~~-~~~~~vY~I~v~~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~K~~ 93 (143)
T 1h6h_A 15 LPDDVAISANIADIEEKRG-FTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVY 93 (143)
T ss_dssp SCTTCEEEEEEEEEEEECS-SSCEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCC
T ss_pred CccCCeEEEEEcCccccCC-CCCeEEEEEEEEEcCCCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCCCcc
Confidence 4445568999999987543 23221 1111111111 2379999999999987 67777
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHhcCCC-cccccccccccccc
Q psy17920 73 IGRYEEQFIEHRKNQLQSFVDYVCRHPV-LCRSPVWQHFITCT 114 (393)
Q Consensus 73 ~g~~~~~Fie~Rr~~L~~fl~rv~~HPv-L~~~~~~~~FL~~~ 114 (393)
.|+ +++|||+||++|+.||++|+.||. |+.|+.++.||+.+
T Consensus 94 ~~~-~~~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~ 135 (143)
T 1h6h_A 94 VGV-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQS 135 (143)
T ss_dssp SSC-HHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCC
T ss_pred cCc-CHHHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCC
Confidence 887 899999999999999999999997 99999999999986
No 14
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.37 E-value=9.8e-11 Score=116.98 Aligned_cols=70 Identities=31% Similarity=0.573 Sum_probs=67.0
Q ss_pred HHHhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 323 DILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 323 ~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
.+.++.++++++..+||+++++++++.+|++.||+++.+||+||+.+|+.||+.+|..||+.||+||+++
T Consensus 303 ~aL~k~~ea~kl~~~~K~~~~~~~e~~~r~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~ 372 (386)
T 4akv_A 303 GAFAKVKESQRMSDEGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRV 372 (386)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999999999999999999999999999999999999999999999986
No 15
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.37 E-value=5.4e-14 Score=118.29 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=74.0
Q ss_pred ceEEEeeCCccccccccccccchhhhhccc--cceEecCCCCcccccC--------------CccccccCC-ChHHHHHH
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVKSL--VAVVADQTKKCQTLYK--------------REYQKIGRY-EEQFIEHR 84 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~--~~~v~rry~df~~l~~--------------P~K~~~g~~-~~~Fie~R 84 (393)
...|+|.+|++...+...+++.+.....+. ...|.|||+||.||+. |+|.+.|++ +++|+|+|
T Consensus 5 i~~v~V~~~ek~~~~~k~y~Y~I~v~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g~~~~~~~~e~R 84 (121)
T 2ar5_A 5 IKEVSVFTYHKKYNPDKHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDVAAKR 84 (121)
T ss_dssp EEEEEEEEEECCCSSSSCCEEEEEEEETTCSSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSSSSSTTHHHHHH
T ss_pred EEEEEECcEEEEecCCCcEEEEEEEEECCCceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecCccCcHHHHHHH
Confidence 467999999998764333333332222232 3479999999999998 899999976 67899999
Q ss_pred HHHHHHHHHHHhcC-CCcccccccccccccc
Q psy17920 85 KNQLQSFVDYVCRH-PVLCRSPVWQHFITCT 114 (393)
Q Consensus 85 r~~L~~fl~rv~~H-PvL~~~~~~~~FL~~~ 114 (393)
|.+|+.||++|+.+ |.|+.|+.++.|++-+
T Consensus 85 r~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~ 115 (121)
T 2ar5_A 85 KIELNSYLQSLMNASTDVAECDLVCTFFHGS 115 (121)
T ss_dssp HHHHHHHHHHHHTSCHHHHTSHHHHHHTSSS
T ss_pred HHHHHHHHHHHHhCCchhcCCHHHHHHcCCc
Confidence 99999999999886 6999999999999743
No 16
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.35 E-value=1.2e-10 Score=115.52 Aligned_cols=70 Identities=30% Similarity=0.602 Sum_probs=66.4
Q ss_pred HHHhHHHHHHhhhhhccCCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 323 DILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 323 ~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
.+.++.+.++++..+||+++.+++.+++|++.||+++.+||+||+.+|+.||+.+|..||+.||+||+++
T Consensus 283 ~aL~k~~e~~kl~~~~K~~~~~~~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~~qi~~~k~~ 352 (366)
T 3dyt_A 283 GAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETI 352 (366)
T ss_dssp HHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888999999999999999999999999999999999999999999999999999999999986
No 17
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.34 E-value=1.9e-13 Score=116.28 Aligned_cols=92 Identities=12% Similarity=0.181 Sum_probs=67.9
Q ss_pred CCceEEEeeCCccccccccc-cccchhhhhcc--ccceEecCCCCcccccC-----------CccccccCCChHHHHHHH
Q psy17920 20 DHILSISHFNLEQETESCSR-FIHGLDSAVKS--LVAVVADQTKKCQTLYK-----------REYQKIGRYEEQFIEHRK 85 (393)
Q Consensus 20 ~~~~~i~v~~p~k~~~~~s~-f~~~~~~~~~~--~~~~v~rry~df~~l~~-----------P~K~~~g~~~~~Fie~Rr 85 (393)
-..++|+|.++...+++.+. |+ .+..-|.. ....|.|||+||.||++ |+|. .++++++|||+||
T Consensus 20 ~~~~~V~Ip~~~~~~~~~~k~y~-vY~I~v~~~~~~w~V~RRYsdF~~L~~~L~~~~~~p~lP~K~-~~~~~~~~ie~Rr 97 (129)
T 4az9_A 20 FQSMEVYIPSFRYEESDLERGYT-VFKIEVLMNGRKHFVEKRYSEFHALHKKLKKCIKTPEIPSKH-VRNWVPKVLEQRR 97 (129)
T ss_dssp CCCCEEEEEEEEEECCTTSCCEE-EEEEEEEETTEEEEEEEEHHHHHHHHHHHTTTSCCCCCCCSC-CSCCCHHHHHHHH
T ss_pred cceeEEEECcEEEEecCCCCCEE-EEEEEEEECCEEEEEEeeHHHHHHHHHHHHHhCCCCCCCccc-ccCCCHHHHHHHH
Confidence 44578888888777663321 21 11111111 12369999999999999 6655 5789999999999
Q ss_pred HHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 86 NQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 86 ~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
.+||.||++|+.||.+. ++.|..||+..
T Consensus 98 ~~Le~yL~~ll~~~~~~-~~~l~~FL~~~ 125 (129)
T 4az9_A 98 QGLETYLQAVILENEEL-PKLFLDFLNVR 125 (129)
T ss_dssp HHHHHHHHHHHHHCSSC-CHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCchhh-CHHHHHHCCCC
Confidence 99999999999999875 68899999864
No 18
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.24 E-value=4.5e-13 Score=113.73 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=55.2
Q ss_pred ceEecCCCCcccccC-----------CccccccCCChHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy17920 53 AVVADQTKKCQTLYK-----------REYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCT 114 (393)
Q Consensus 53 ~~v~rry~df~~l~~-----------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HPvL~~~~~~~~FL~~~ 114 (393)
.+|.|||+||.||++ |+|.+ ++|+++|||+||++||+||++|+.||.+. ++.|+.||+.+
T Consensus 46 ~~V~RRYSdF~~Lh~~L~~~~~iP~lP~K~~-~~~~~~~ie~Rr~~Le~yL~~ll~~p~~~-s~~l~~FL~~~ 116 (128)
T 2ett_A 46 HTVPRRYSEFHALHKRIKKLYKVPDFPSKRL-PNWRTRGLEQRRQGLEAYIQGILYLNQEV-PKELLEFLRLR 116 (128)
T ss_dssp EEEEEEHHHHHHHHHHHHTTSSCCCCCCSSC-CCSSSSCHHHHHHHHHHHHHHHHHHSSSS-CHHHHHHHTCT
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCcc-CCCCHHHHHHHHHHHHHHHHHHHhCchhc-CHHHHHhcCCc
Confidence 479999999999999 88885 58999999999999999999999999877 68999999976
No 19
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.21 E-value=3.2e-13 Score=116.36 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=68.0
Q ss_pred cCCCceEEEeeCCccccccccccccchhhhhccc--cceEecCCCCcccccC--------------CccccccCC-ChHH
Q psy17920 18 VMDHILSISHFNLEQETESCSRFIHGLDSAVKSL--VAVVADQTKKCQTLYK--------------REYQKIGRY-EEQF 80 (393)
Q Consensus 18 ~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~--~~~v~rry~df~~l~~--------------P~K~~~g~~-~~~F 80 (393)
.......|+|.++++..++...+++.+.....+. ...|.|||+||.|||. |+|.+.|++ +++|
T Consensus 16 ~~~~i~~v~I~~~ek~~~~~k~~~Y~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~~~~~~~~~ 95 (140)
T 2iwl_X 16 QDGRIKEVSVFTYHKKYNPDKHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDV 95 (140)
T ss_dssp HHCCEEEEEEEEEEECCSSSSCEEEEEEEEETTCSSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC----------CC
T ss_pred CCCeeEEEEECcEEEEecCCCeEEEEEEEEECCCceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeecCccchHHH
Confidence 3445578999999988753333332222222222 2379999999999999 899999977 6779
Q ss_pred HHHHHHHHHHHHHHHhc-CCCcccccccccccccc
Q psy17920 81 IEHRKNQLQSFVDYVCR-HPVLCRSPVWQHFITCT 114 (393)
Q Consensus 81 ie~Rr~~L~~fl~rv~~-HPvL~~~~~~~~FL~~~ 114 (393)
+|+||.+|+.||+.|+. ||.++.|+.++.||+..
T Consensus 96 ~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~ 130 (140)
T 2iwl_X 96 AAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPL 130 (140)
T ss_dssp CCHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCC
Confidence 99999999999999998 56999999999999985
No 20
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.19 E-value=2.6e-12 Score=110.74 Aligned_cols=91 Identities=15% Similarity=0.202 Sum_probs=69.7
Q ss_pred ceEEEeeCCccccccccccccchhhhhccc-cceEecCCCCcccccC-----------------------CccccccCCC
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVKSL-VAVVADQTKKCQTLYK-----------------------REYQKIGRYE 77 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~-~~~v~rry~df~~l~~-----------------------P~K~~~g~~~ 77 (393)
...|+|.++++.+.+.+.+++.+....... ...|.|||+||.|||. |+|.+.|+
T Consensus 6 i~~v~V~~~ek~~~~~~~~~Y~I~V~~~~~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP~K~~~~~-- 83 (141)
T 1kq6_A 6 IRHIALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDG-- 83 (141)
T ss_dssp EEEEEEEEEEEECSSSCEEEEEEEEEETTCCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCCCCCS--
T ss_pred EEEEEEccEEEecCCCCeEEEEEEEEEcCCCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCCCccccCC--
Confidence 467999999998864333332222221122 2379999999999997 45556664
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC-Ccccccccccccccc
Q psy17920 78 EQFIEHRKNQLQSFVDYVCRHP-VLCRSPVWQHFITCT 114 (393)
Q Consensus 78 ~~Fie~Rr~~L~~fl~rv~~HP-vL~~~~~~~~FL~~~ 114 (393)
++|+|+||.+|+.||+.|+.|| .++.|+.++.||+..
T Consensus 84 ~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~ 121 (141)
T 1kq6_A 84 QRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVR 121 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCC
Confidence 8999999999999999999998 599999999999886
No 21
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=98.72 E-value=4e-06 Score=77.69 Aligned_cols=181 Identities=9% Similarity=0.054 Sum_probs=119.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy17920 152 LEQETESCSRFIHGLDSAVKSLVAVVADQTKK------CQTLYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFEEQPK 225 (393)
Q Consensus 152 ~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk------~~~~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~~Q~~ 225 (393)
.|..++.....++.++..+..|.+-+...... ....++..+..+....+....++..+++.++.+. .+...
T Consensus 35 ~D~~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 111 (244)
T 1uru_A 35 ADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTGASESLW---ADFAH 111 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHH---HHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHH---HHHHH
Confidence 36666666666666666665555544443221 1123444455543321111233444444333322 22222
Q ss_pred ccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHhhh-------hccc--cHHHHHHHHHHHHHHHHHHHH
Q psy17920 226 LDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY----EKMTT-------ENKM--EANRLQEVLKRTDTVSYALLG 292 (393)
Q Consensus 226 ~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl~~-------e~k~--~~~~ve~~~~~~e~is~~v~~ 292 (393)
.-...+.++|+.|.+.+..++..+..+...+-.+..+ +++.. +.++ .+.+++.++..++.++..++.
T Consensus 112 ~~~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~ln~~L~~ 191 (244)
T 1uru_A 112 KLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHD 191 (244)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2235699999999999999999888877654433332 22221 2233 247899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 293 EINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 293 E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
|+.+|...+...+...+..|+..|+.||.+++..|....+.+.
T Consensus 192 eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~ 234 (244)
T 1uru_A 192 ELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVD 234 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999877554
No 22
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=98.65 E-value=7.1e-06 Score=76.62 Aligned_cols=179 Identities=12% Similarity=0.077 Sum_probs=116.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHHHH-HHHHHhcCcc
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKC------QTLYKREYQKIGIDRSHLRDALKKTGDTYNE-LGKLFEEQPK 225 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~------~~~~~~~~~~lg~d~s~L~~al~~lg~~~~~-i~~~~~~Q~~ 225 (393)
|..|+.....+..++..+..|.+-+..+.... ...++..+..+....+.-..++..++..++. +.++....
T Consensus 51 D~~Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~l-- 128 (251)
T 2fic_A 51 DEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKL-- 128 (251)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSTTHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHHHHHHH--
Confidence 55666666666666666666555444433211 1123344444322111111233344444442 22222211
Q ss_pred ccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHhh-----hhcccc--HHHHHHHHHHHHHHHHHHHHHH
Q psy17920 226 LDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREY----EKMT-----TENKME--ANRLQEVLKRTDTVSYALLGEI 294 (393)
Q Consensus 226 ~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl~-----~e~k~~--~~~ve~~~~~~e~is~~v~~E~ 294 (393)
...+.++|+.|...+..++..+..+...+-.+..+ +++. .+.++. +.+++.++..++.++..++.|+
T Consensus 129 --~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L~~eL 206 (251)
T 2fic_A 129 --VDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEEL 206 (251)
T ss_dssp --HHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14599999999999999998888877654443322 2221 122332 3789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 295 NHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 295 ~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
..|...+...|...+..|+..|..||.+++..|....+.|.
T Consensus 207 p~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~ 247 (251)
T 2fic_A 207 PSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 247 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988774
No 23
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=98.54 E-value=4.2e-09 Score=91.48 Aligned_cols=92 Identities=13% Similarity=0.052 Sum_probs=66.5
Q ss_pred eEEEeeCCccccccccccc-cchhhhhccc-cceEecCCCCcccccC-----------------------CccccccCC-
Q psy17920 23 LSISHFNLEQETESCSRFI-HGLDSAVKSL-VAVVADQTKKCQTLYK-----------------------REYQKIGRY- 76 (393)
Q Consensus 23 ~~i~v~~p~k~~~~~s~f~-~~~~~~~~~~-~~~v~rry~df~~l~~-----------------------P~K~~~g~~- 76 (393)
..|.|.+++|+......|+ +.+....++. ...|.|||+||..||. |.|.+.|+.
T Consensus 9 ~~v~v~~~ek~~~~~~~y~~Y~I~V~~~d~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~~~~~ 88 (149)
T 2l73_A 9 PRYPVSVQGAALVQIKRLQTFAFSVRWSDGSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLGRVG 88 (149)
T ss_dssp CCCEEEEEEEEEECCSSSCEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCCSSCC
T ss_pred eEEEEEeeeEeecCCCceEEEEEEEEEeCCCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeeecccc
Confidence 3577777888664333333 2222211222 2379999999999887 566666653
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC-Ccccccccccccccc
Q psy17920 77 EEQFIEHRKNQLQSFVDYVCRHP-VLCRSPVWQHFITCT 114 (393)
Q Consensus 77 ~~~Fie~Rr~~L~~fl~rv~~HP-vL~~~~~~~~FL~~~ 114 (393)
+.+++++||.+|+.||+.+...| .++.|+.++.||+..
T Consensus 89 ~~~~~e~R~~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~ 127 (149)
T 2l73_A 89 RTSRGLARLQLLETYSRRLLATAERVARSPTITGFFAPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHSHHHHHHHSCC
T ss_pred chHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCC
Confidence 57899999999999999999877 599999999999986
No 24
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=98.43 E-value=2.5e-08 Score=97.94 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=71.7
Q ss_pred cCCCceEEEeeCCccccccccccccchhhhhcccc-ceEecCCCCcccccC----------------------Ccccccc
Q psy17920 18 VMDHILSISHFNLEQETESCSRFIHGLDSAVKSLV-AVVADQTKKCQTLYK----------------------REYQKIG 74 (393)
Q Consensus 18 ~~~~~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~-~~v~rry~df~~l~~----------------------P~K~~~g 74 (393)
+.+..+.|+|.++++.+.....+++.+....+... ..|.|||+||..||. |+|.+.|
T Consensus 19 ~~~~~~~v~I~~~~~~~~~~~~~~Y~i~v~~~~~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~k~~~~ 98 (341)
T 2dyb_A 19 PDDVAISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAKVYVG 98 (341)
T ss_dssp CTTSEEEEEEEEEEEEESSSEEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCCCCCCS
T ss_pred CCCCcEEEEECCeEEecCCCcEEEEEEEEEEcCCcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCCccccC
Confidence 45566899999998875422222222221111222 479999999999996 6777777
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcCCC-cccccccccccccc
Q psy17920 75 RYEEQFIEHRKNQLQSFVDYVCRHPV-LCRSPVWQHFITCT 114 (393)
Q Consensus 75 ~~~~~Fie~Rr~~L~~fl~rv~~HPv-L~~~~~~~~FL~~~ 114 (393)
+ ..+|+++|+..|+.||+++..+|. ++.|+.+..|++..
T Consensus 99 ~-~~~~~e~R~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~ 138 (341)
T 2dyb_A 99 V-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQS 138 (341)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHHSCHHHHTCHHHHHHHSCC
T ss_pred c-cHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Confidence 6 678999999999999999999995 89999999999876
No 25
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=98.12 E-value=9.9e-07 Score=77.00 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=49.4
Q ss_pred ceEecCCCCcccccC------Cc----------------------cccccCCChHHHHHHHHHHHHHHHHHhcCC-Cccc
Q psy17920 53 AVVADQTKKCQTLYK------RE----------------------YQKIGRYEEQFIEHRKNQLQSFVDYVCRHP-VLCR 103 (393)
Q Consensus 53 ~~v~rry~df~~l~~------P~----------------------K~~~g~~~~~Fie~Rr~~L~~fl~rv~~HP-vL~~ 103 (393)
..|.|||+||.+||. |. |.+. .+++|+|+||.+|+.||+.|+..| .++.
T Consensus 47 ~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~LP~K~~~--~~~~~~e~Rr~~Le~YL~~Ll~lp~~i~~ 124 (156)
T 2v6v_A 47 RQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPVPY--VTNSITKKRKEDLNIYVADLVNLPDYISR 124 (156)
T ss_dssp EEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCCCCCCCSS--CCHHHHHHHHHHHHHHHHHHHTSCHHHHT
T ss_pred EEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCCCCCCccc--CCHHHHHHHHHHHHHHHHHHHhCCccccC
Confidence 369999999998887 32 2222 268899999999999999999855 7999
Q ss_pred ccccccccccc
Q psy17920 104 SPVWQHFITCT 114 (393)
Q Consensus 104 ~~~~~~FL~~~ 114 (393)
|+.++.||+..
T Consensus 125 s~~v~~Ff~~~ 135 (156)
T 2v6v_A 125 SEMVHSLFVVL 135 (156)
T ss_dssp SHHHHHTTSCC
T ss_pred CHHHHHHhCCC
Confidence 99999999986
No 26
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=97.84 E-value=0.0028 Score=59.22 Aligned_cols=133 Identities=11% Similarity=0.163 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHh-HHhhhhhHHHHHHHHHHHHHHHHHhh-hhccccHHHH
Q psy17920 199 RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKG-IITSMPDILGLHKDILNKKREYEKMT-TENKMEANRL 276 (393)
Q Consensus 199 ~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~-ll~s~~~v~~~~~~al~k~re~erl~-~e~k~~~~~v 276 (393)
.+.+..+|...|.++..|++....+-..=...|.++|..+.. .+. .+...+++.-.+.=+.+... .-.|...+++
T Consensus 107 ~s~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k---~i~k~rkkl~~~rLdyD~~k~k~~k~~eeEl 183 (256)
T 1zww_A 107 DCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLR---EIQHHLKKLEGRRLDFGYKKKRQGKIPDEEL 183 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHH---HHHHHHHHHHHHHHHHHHHHHTTTTSCHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 345889999999999999986655433223457778776542 333 33223322111111221110 1235568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 277 QEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 277 e~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
+.++..|+..+..+..+|..|-... .++-..|.+|++.|..||.+++.......+.+.
T Consensus 184 e~A~~~fe~~~e~~~~~m~~l~~~e-~e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~ 241 (256)
T 1zww_A 184 RQALEKFDESKEIAESSMFNLLEMD-IEQVSQLSALVQAQLEYHKQAVQILQQVTVRLE 241 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765 566688899999999999999999999887776
No 27
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=97.83 E-value=0.0023 Score=59.30 Aligned_cols=143 Identities=13% Similarity=0.204 Sum_probs=98.9
Q ss_pred HHHHHHHhcc---chhHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHHHHHHHHHHH-HHH
Q psy17920 188 YKREYQKIGI---DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKR-EYE 263 (393)
Q Consensus 188 ~~~~~~~lg~---d~s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~~~~al~k~r-e~e 263 (393)
++..+...|. +.+.++.+|...|.+..+|++....+-..--..|.++|..+.. .-++.+...++. +.+.+ +.+
T Consensus 77 L~~~m~~~~~~l~~ds~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~--~d~k~i~~~rKk-le~~rLd~D 153 (240)
T 2z0v_A 77 LGDCMLKYGKELGEDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQD--KDLKEIGHHLKK-LEGRRLDYD 153 (240)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH--THHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHH
Confidence 3444444343 2456999999999999999987655433223457777776641 223333333332 22222 221
Q ss_pred --HhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 264 --KMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 264 --rl~~e~k~~~~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
|.. -.+....+++.++..|+.....+..+|..|-..+ .++-..|..|++.|..||++++.......+.+.
T Consensus 154 ~ak~k-~~k~~eeEl~~A~~~fe~~~e~~~~~m~~~~~~~-~e~l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~ 225 (240)
T 2z0v_A 154 YKKKR-VGKIPDEEVRQAVEKFEESKELAERSMFNFLEND-VEQVSQLAVFIEAALDYHRQSTEILQELQSKLQ 225 (240)
T ss_dssp HHHTT-TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHST-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1345679999999999999999999999998776 566679999999999999999999999887765
No 28
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=97.53 E-value=0.054 Score=49.93 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=84.4
Q ss_pred chhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHhhh-----hcccc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 230 PLGDVLHIYKGIITSMPDILGLHKDILNKKREY----EKMTT-----ENKME--ANRLQEVLKRTDTVSYALLGEINHFH 298 (393)
Q Consensus 230 ~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl~~-----e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF~ 298 (393)
.+..+|..|..++..++..+..|...+-.+..+ +++.. +.|+. +.+++.++..++.++..++.|+..|-
T Consensus 112 ~vi~Pl~~~~~~~~~i~k~I~KR~~kllDyd~~~~~~~kl~~k~~kd~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l~ 191 (237)
T 4avm_A 112 QAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPILY 191 (237)
T ss_dssp CCCHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999888877655444322 23311 11222 36788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 299 QEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 299 ~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
.-+..=|-..+..++..|..||..+...+.....-|.
T Consensus 192 ~~~~~~~~~~~~~~i~~q~~f~~~~~~~~~~l~~~~~ 228 (237)
T 4avm_A 192 NSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMS 228 (237)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999888776444
No 29
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=97.49 E-value=0.042 Score=50.89 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=84.0
Q ss_pred chhHHHHHHHhHHhhhhhHHHHHHHHHHHHHHH----HHhh-----hhcccc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 230 PLGDVLHIYKGIITSMPDILGLHKDILNKKREY----EKMT-----TENKME--ANRLQEVLKRTDTVSYALLGEINHFH 298 (393)
Q Consensus 230 ~l~e~L~ey~~ll~s~~~v~~~~~~al~k~re~----erl~-----~e~k~~--~~~ve~~~~~~e~is~~v~~E~~rF~ 298 (393)
....+|..|..++..++..+..|...+-.+..+ +++. .+.|+. +.+++.++..++.++..++.|+-.|.
T Consensus 117 ~~l~Pl~~l~~~f~~i~k~I~KR~~KllDYD~~~~k~~kL~~K~~kd~~kl~kae~el~~Ak~~Ye~lN~~L~eELP~l~ 196 (243)
T 4a3a_A 117 GSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLW 196 (243)
T ss_dssp THHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHChHHHHHHHHhcchHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999998888877654444322 2332 122222 37889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhh
Q psy17920 299 QEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMT 335 (393)
Q Consensus 299 ~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~ 335 (393)
.-|+.=|-..+..|+..|..||..+.......+.-|.
T Consensus 197 ~~r~~~~~~~~~s~i~~Q~~f~~e~~k~~~~l~~~~~ 233 (243)
T 4a3a_A 197 SRRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMT 233 (243)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999988877766553
No 30
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=97.36 E-value=0.045 Score=51.02 Aligned_cols=175 Identities=11% Similarity=0.178 Sum_probs=102.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------DRSHLRDALKKTGDTYNELGKLFEEQPK 225 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d~s~L~~al~~lg~~~~~i~~~~~~Q~~ 225 (393)
+..++.+..++++|....+.+......+..- ...|...+..++. +...+..+|...|.....++........
T Consensus 27 E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a-~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~~~~~l~~ 105 (265)
T 2q12_A 27 EEDATAISNYMNQLYQAMHRIYDAQNELSAA-THLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLST 105 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333221 2235555555553 1223678888999888888765433322
Q ss_pred ccccchhHHHHHHH-hHHhhhhhHHHH-------HHHHHHHHHHHHHhhhhcc---ccHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 226 LDWEPLGDVLHIYK-GIITSMPDILGL-------HKDILNKKREYEKMTTENK---MEANRLQEVLKRTDTVSYALLGEI 294 (393)
Q Consensus 226 ~d~~~l~e~L~ey~-~ll~s~~~v~~~-------~~~al~k~re~erl~~e~k---~~~~~ve~~~~~~e~is~~v~~E~ 294 (393)
+-...+.++|..+. +-+..+++.=.. +..++.|+-.+.+-+...+ ....++..+++.|+..+-....-|
T Consensus 106 ~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k~~e~~l~Ea~~~l~~~Rk~f~~~~ldyv~~l 185 (265)
T 2q12_A 106 QLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCAL 185 (265)
T ss_dssp HHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234666666654 334444432221 2334455444433211101 123667777888888887777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q psy17920 295 NHFHQEQVSQINAAMKSFLTEQINFYQKDILNKK 328 (393)
Q Consensus 295 ~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~ 328 (393)
+..+..+..++-+.|..|+..|..||+++...+.
T Consensus 186 ~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~ 219 (265)
T 2q12_A 186 NTLQYKKKIALLEPLLGYMQAQISFFKMGSENLN 219 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999988763
No 31
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=97.25 E-value=1.8e-05 Score=66.03 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=43.6
Q ss_pred eEecCCCCcccccC--------------CccccccCCChHHHHHHHHHHHHHHHHHhc-CCCccccccccccccc
Q psy17920 54 VVADQTKKCQTLYK--------------REYQKIGRYEEQFIEHRKNQLQSFVDYVCR-HPVLCRSPVWQHFITC 113 (393)
Q Consensus 54 ~v~rry~df~~l~~--------------P~K~~~g~~~~~Fie~Rr~~L~~fl~rv~~-HPvL~~~~~~~~FL~~ 113 (393)
.|.|||++|.-||+ |+|.+.|+ +..=++ ||++|+.||..|+. -|.++.|+.++.||..
T Consensus 54 ~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll~~-t~~~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 54 LTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHLPF-TNSDHR-RFRDLNHYMEQILNVSHEVTNSDCVLSFFLS 126 (127)
T ss_dssp EEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSHHH-HHCHHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred EEEEEHHHHHHHHHHHHHhCccccCCCCCCccccCc-CHHHHH-HHHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence 46666666666555 56666663 333455 99999999999998 7999999999999863
No 32
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=97.24 E-value=0.045 Score=53.88 Aligned_cols=175 Identities=11% Similarity=0.175 Sum_probs=97.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy17920 153 EQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGI-------DRSHLRDALKKTGDTYNELGKLFEEQPK 225 (393)
Q Consensus 153 d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~lg~-------d~s~L~~al~~lg~~~~~i~~~~~~Q~~ 225 (393)
+..++.++.++++|-...+.+......+... ...|...+..++. +...+..+|...|+.+..++........
T Consensus 27 E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a-~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~~~~~l~~ 105 (385)
T 2q13_A 27 EEDATAISNYMNQLYQAMHRIYDAQNELSAA-THLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLST 105 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333332211 1234555555543 1223667899999988888765544322
Q ss_pred ccccchhHHHHHHHh-HHhhhhhHHHHHH-------HHHHHHHHHHHhhhhccc---cHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 226 LDWEPLGDVLHIYKG-IITSMPDILGLHK-------DILNKKREYEKMTTENKM---EANRLQEVLKRTDTVSYALLGEI 294 (393)
Q Consensus 226 ~d~~~l~e~L~ey~~-ll~s~~~v~~~~~-------~al~k~re~erl~~e~k~---~~~~ve~~~~~~e~is~~v~~E~ 294 (393)
+-...+.++|..+.. -+..+++.-.... .++.|+-.+.+-....+. ...++..+++.++..+-....-|
T Consensus 106 ~~~~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~k~~~~~k~k~~e~~~~ea~~~l~~~rk~f~~~~ldy~~~l 185 (385)
T 2q13_A 106 QLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCAL 185 (385)
T ss_dssp HHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222335566665542 3444433222222 223332222111100000 01456677778888877666679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Q psy17920 295 NHFHQEQVSQINAAMKSFLTEQINFYQKDILNKK 328 (393)
Q Consensus 295 ~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~ 328 (393)
+..+..+..++-+.|..|+..|..||+++...|.
T Consensus 186 ~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~~ 219 (385)
T 2q13_A 186 NTLQYKKKIALLEPLLGYMQAQISFFKMGSENLN 219 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998874
No 33
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=96.55 E-value=0.69 Score=45.60 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH
Q psy17920 274 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKR 329 (393)
Q Consensus 274 ~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~ 329 (393)
.++..+++.+...+-.....|+.++..+..++-..|..|+..|..|++.+...|..
T Consensus 188 ~~l~~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~~~ 243 (407)
T 4h8s_A 188 KEVAAARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMFSK 243 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666677777777667777888999999999999999999999999999876543
No 34
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=95.19 E-value=1.8 Score=39.40 Aligned_cols=167 Identities=12% Similarity=0.155 Sum_probs=99.6
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy17920 150 FNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKC------QTLYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFEEQ 223 (393)
Q Consensus 150 ~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~------~~~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~~Q 223 (393)
.+++..++.|. .....-..|.+++..+.+.. ...++.-|..+|.-.+.++.++...|++...++.-
T Consensus 7 ~EL~~klE~l~----~~q~~Y~~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~~p~l~~~f~~~~~~~r~~~k~---- 78 (224)
T 1i4d_A 7 LELELQIELLR----ETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKN---- 78 (224)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHh----
Confidence 34556665554 33333333444443333221 12344445555553456888888888887776631
Q ss_pred ccccccchhHHHHHHHhHHh-----hhhhHHHHHHH----------HHHHHHHHHHhhhhc-------cc--cHHHHHHH
Q psy17920 224 PKLDWEPLGDVLHIYKGIIT-----SMPDILGLHKD----------ILNKKREYEKMTTEN-------KM--EANRLQEV 279 (393)
Q Consensus 224 ~~~d~~~l~e~L~ey~~ll~-----s~~~v~~~~~~----------al~k~re~erl~~e~-------k~--~~~~ve~~ 279 (393)
-+.+...|+-+..-+. +++|....-+. ++.+++++ ..+. ++ .+..+..+
T Consensus 79 ----g~~Ll~~L~~f~s~l~T~~~kaI~DT~lTIk~ye~aR~EY~ay~~~~ee~---~~~~~~~~~l~rve~~q~~~~~a 151 (224)
T 1i4d_A 79 ----GETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEEL---SLGPRDAGTRGRLESAQATFQAH 151 (224)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C------------CHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHhHhccHHHHHHHHHHHHhHhHHHHHhhHHHh---hcccccccchhhHHHHHHHHHHH
Confidence 1234445554444333 34555443222 22223322 2111 11 13677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Q psy17920 280 LKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREY 331 (393)
Q Consensus 280 ~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~ 331 (393)
+.+|+.+...+..=|+-....|..+|...|..|......|+.+++.......
T Consensus 152 k~kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l~~~~ 203 (224)
T 1i4d_A 152 RDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTL 203 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888775554
No 35
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=92.32 E-value=0.042 Score=46.39 Aligned_cols=63 Identities=10% Similarity=-0.072 Sum_probs=45.8
Q ss_pred CCCCCccccccccccCCC-----ceEEEeeCC--c------cccccccccccchhhhhccccceEecCCCCccccc
Q psy17920 4 PPGDLNIVELIGLKVMDH-----ILSISHFNL--E------QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-----~~~i~v~~p--~------k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
+++||.|.+...-+-+++ .|.|.|... . .+..+||||..+.+.+...+|++++|++|.+.++.
T Consensus 5 d~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~ 80 (138)
T 3iq2_A 5 DLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVK 80 (138)
T ss_dssp CCCCCEEEEEEEEEEECSSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC---
T ss_pred ccceEEEEECCCEEecCCCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhc
Confidence 567888887776655443 277777643 1 22336999999999999999999999999998874
No 36
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=90.38 E-value=10 Score=34.38 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=45.8
Q ss_pred HHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 343 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 343 ~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
.+++..+..-+.+.--+..||..|+..|+..|...+.+|+.-|..||..+
T Consensus 186 ~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~ 235 (251)
T 2fic_A 186 EELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEM 235 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888889999999999999999999999999999999999864
No 37
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=86.30 E-value=0.19 Score=43.58 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=44.8
Q ss_pred CCCCCccccccccccCCCc-eEEEeeC--Cc------cccccccccccchhhhhc--cccceEecCCCCcccc
Q psy17920 4 PPGDLNIVELIGLKVMDHI-LSISHFN--LE------QETESCSRFIHGLDSAVK--SLVAVVADQTKKCQTL 65 (393)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~i~v~~--p~------k~~~~~s~f~~~~~~~~~--~~~~~v~rry~df~~l 65 (393)
|...|.|.+..+-+.++.. |.|.+.. |. .+..+||||+.+++.+.. .+|++++|++|++..+
T Consensus 8 ~~~~l~i~V~dp~~~~~~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~ 80 (161)
T 3hpc_X 8 VDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDF 80 (161)
T ss_dssp CSCSEEEEEEEEEEETTEEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCC
T ss_pred CCCeEEEEECCCeEecCCEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccc
Confidence 3445777777766655543 6666643 21 222369999999999998 7899999999999876
No 38
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=82.89 E-value=36 Score=33.03 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=15.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy17920 362 EINHFHQEQVSQINAAMKSFLTEQINFYQ 390 (393)
Q Consensus 362 e~~~f~~~~~~d~~~~~~~~l~~q~~fy~ 390 (393)
.|+-.+..+-.+|-..|-.|+..|..||+
T Consensus 207 ~l~~lq~rk~~e~le~l~~~~~a~~~~f~ 235 (407)
T 4h8s_A 207 ALNALQYRKQMAMMEPMIGFAHGQINFFK 235 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555554
No 39
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.61 E-value=0.52 Score=39.78 Aligned_cols=62 Identities=10% Similarity=-0.142 Sum_probs=43.5
Q ss_pred CCCCCCccccccccccCCC-----ceEEEeeCC--c------cccccccccccchhhhhccccceEecCCCCcccc
Q psy17920 3 VPPGDLNIVELIGLKVMDH-----ILSISHFNL--E------QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTL 65 (393)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~-----~~~i~v~~p--~------k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l 65 (393)
+|.+.|.|.....-+..++ .|.|.|... . .+..+||||..+++.+... |++++|++|.+.++
T Consensus 6 ~~~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iP~lP~K~~~ 80 (146)
T 2csk_A 6 SGSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALK 80 (146)
T ss_dssp CCSCCCEEEEEEEEEESSSSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSS-SSCCCCCCSCCCCC
T ss_pred CCCCcEEEEEcCceEecCCCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhc-cCCcCCCCCCCchh
Confidence 3556677766555554432 477887532 1 2223799999999998865 88999999999987
No 40
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=81.48 E-value=0.6 Score=38.10 Aligned_cols=45 Identities=4% Similarity=-0.025 Sum_probs=34.2
Q ss_pred ceEEEeeCC--------ccccccccccccchhhhhcccc--ceEecCCCCccccc
Q psy17920 22 ILSISHFNL--------EQETESCSRFIHGLDSAVKSLV--AVVADQTKKCQTLY 66 (393)
Q Consensus 22 ~~~i~v~~p--------~k~~~~~s~f~~~~~~~~~~~~--~~v~rry~df~~l~ 66 (393)
.|.|.|... -.+..+||||..+++.+...+| +.++|++|.+.++.
T Consensus 23 ~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~ 77 (128)
T 2i4k_A 23 AYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIG 77 (128)
T ss_dssp CCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSS
T ss_pred EEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccc
Confidence 477777532 1223369999999999999886 47999999999875
No 41
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=78.48 E-value=0.39 Score=38.87 Aligned_cols=45 Identities=11% Similarity=-0.073 Sum_probs=38.2
Q ss_pred ceEEEeeCCccccccccccccchhhhhccccceEecCCCCccccc
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
.|.|.|..+-.+..+||||..+++.+...+|+..+|++|.+.|+.
T Consensus 25 ~Y~I~v~~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~ 69 (115)
T 3lui_A 25 AYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS 69 (115)
T ss_dssp EEEEEETTEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSC
T ss_pred EEEEEECCeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccC
Confidence 478888765555668999999999999999998899999999873
No 42
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=75.46 E-value=59 Score=31.19 Aligned_cols=30 Identities=13% Similarity=0.398 Sum_probs=23.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 362 EINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 362 e~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
-|+-.+..+-.+|-..|-.|+..|..||+.
T Consensus 184 ~l~~l~~rk~~e~le~l~~~~~a~~~ff~~ 213 (385)
T 2q13_A 184 ALNTLQYKKKIALLEPLLGYMQAQISFFKM 213 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777778888888888888888764
No 43
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=64.33 E-value=41 Score=24.96 Aligned_cols=77 Identities=10% Similarity=0.208 Sum_probs=50.8
Q ss_pred CCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy17920 147 ISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQ----TLYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFEE 222 (393)
Q Consensus 147 ~~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~----~~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~~ 222 (393)
++|..+......|......|+..+..|......|..--. ..|...|.++-+....+..+|..++......+..+.+
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y~~ 85 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQE 85 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778888888888888888887777643111 1344455554444445778888888888888776654
Q ss_pred C
Q psy17920 223 Q 223 (393)
Q Consensus 223 Q 223 (393)
.
T Consensus 86 ~ 86 (97)
T 2vs0_A 86 Q 86 (97)
T ss_dssp -
T ss_pred H
Confidence 3
No 44
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=63.50 E-value=44 Score=24.94 Aligned_cols=76 Identities=9% Similarity=0.140 Sum_probs=47.7
Q ss_pred CCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy17920 147 ISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKC----QTLYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFEE 222 (393)
Q Consensus 147 ~~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~----~~~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~~ 222 (393)
++|..+......+......|+..+..|......|..-= ...|...|.++-+....+.++|..++..+...+..+.+
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~ 88 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILED 88 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777888888888888888888777764311 11244445444443344666777777666666655533
No 45
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=63.49 E-value=79 Score=27.88 Aligned_cols=57 Identities=11% Similarity=0.257 Sum_probs=50.3
Q ss_pred hhccCC--HHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy17920 336 TENKME--ANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392 (393)
Q Consensus 336 ~e~k~~--~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~~ 392 (393)
++.|+. ..+++..+..-+.+.--+..|+..|+..|+..|...+.+|+.-|..||..+
T Consensus 164 d~~kl~~ae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~ 222 (244)
T 1uru_A 164 DDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNET 222 (244)
T ss_dssp BCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355553 457888888999999999999999999999999999999999999999875
No 46
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=60.25 E-value=2.9 Score=33.59 Aligned_cols=42 Identities=7% Similarity=-0.016 Sum_probs=33.3
Q ss_pred ceEEEeeCCccccccccccccchhhhhccccceEec-CCCCcccc
Q psy17920 22 ILSISHFNLEQETESCSRFIHGLDSAVKSLVAVVAD-QTKKCQTL 65 (393)
Q Consensus 22 ~~~i~v~~p~k~~~~~s~f~~~~~~~~~~~~~~v~r-ry~df~~l 65 (393)
.|.|.| ..-.+..+||||..+++.+...+| .++| ++|.+.++
T Consensus 21 ~Y~I~v-~~~~V~RRYsdF~~L~~~L~~~~~-~~~P~~lP~K~~~ 63 (117)
T 1kmd_A 21 LYGVST-PNKRLYKRYSEFWKLKTRLERDVG-STIPYDFPEKPGV 63 (117)
T ss_dssp EEEEEC-SSCCEEECHHHHHHHHHHHHHHHC-SCCCCCCCCCCCS
T ss_pred EEEEEE-ceEEEEechHHHHHHHHHHHHHcC-ccCCCCCCCCCEe
Confidence 478888 223333479999999999998888 6788 99999886
No 47
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=59.69 E-value=2.4 Score=35.37 Aligned_cols=45 Identities=7% Similarity=-0.147 Sum_probs=32.2
Q ss_pred ceEEEeeCCc-----cccccccccccchhhhhccccceEecCCCCccccc
Q psy17920 22 ILSISHFNLE-----QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 22 ~~~i~v~~p~-----k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
.|.|.|.... .+..+||||..+++.+...||...+|++|.+.|+.
T Consensus 39 ~Y~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~~ 88 (140)
T 2iwl_X 39 IYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLG 88 (140)
T ss_dssp EEEEEEEETTCSSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC-----
T ss_pred EEEEEEEECCCceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeecC
Confidence 3677775433 33447999999999999999999999999999984
No 48
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=59.53 E-value=2.5 Score=35.01 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=48.4
Q ss_pred eEEEeeCCcc---ccccccccccchhhhhccccceEecCCCCcccccCCccccc-cCCChHHHHHHHHHHHHHHH---HH
Q psy17920 23 LSISHFNLEQ---ETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKI-GRYEEQFIEHRKNQLQSFVD---YV 95 (393)
Q Consensus 23 ~~i~v~~p~k---~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~P~K~~~-g~~~~~Fie~Rr~~L~~fl~---rv 95 (393)
|.|.|..+.. +..+||||..+++.+...+|....+++|.+.|+..-..... .| ..-+| .-|++-++ .+
T Consensus 26 Y~I~v~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~~~~~~~~ie~R--r~~Le---~yL~~ll~~~~~l 100 (134)
T 2v14_A 26 FEVKITVLDETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERVIAER--RSHLE---KYLRDFFSVMLQS 100 (134)
T ss_dssp EEEEEEETTEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSSCTTSHHHHHHH--HHHHH---HHHHHHHHHHHHC
T ss_pred EEEEEEECCeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccccCCCHHHHHHH--HHHHH---HHHHHHHhChHhh
Confidence 6777764322 22379999999999999999988999999999854111111 22 12222 24454444 35
Q ss_pred hcCCCccc
Q psy17920 96 CRHPVLCR 103 (393)
Q Consensus 96 ~~HPvL~~ 103 (393)
...|++..
T Consensus 101 ~~sp~~l~ 108 (134)
T 2v14_A 101 ATSPLHIN 108 (134)
T ss_dssp TTSTTCTT
T ss_pred cCCHHHHc
Confidence 67886654
No 49
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=57.52 E-value=1.1e+02 Score=27.61 Aligned_cols=52 Identities=10% Similarity=0.252 Sum_probs=43.8
Q ss_pred cCCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 339 KMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 339 k~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
|....+++.....-+...--+.++|..|-..++ +|-..+..|+.-|..||++
T Consensus 177 k~~eeEle~A~~~fe~~~e~~~~~m~~l~~~e~-e~~~~L~~~v~aQl~y~~~ 228 (256)
T 1zww_A 177 KIPDEELRQALEKFDESKEIAESSMFNLLEMDI-EQVSQLSALVQAQLEYHKQ 228 (256)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence 445788888888888888999999999998774 5557779999999999985
No 50
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=57.42 E-value=58 Score=24.39 Aligned_cols=75 Identities=7% Similarity=0.130 Sum_probs=44.8
Q ss_pred CCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Q psy17920 147 ISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKC----QTLYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFE 221 (393)
Q Consensus 147 ~~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~----~~~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~ 221 (393)
++|.++......+......++..+..|......|..-= ...|...|.++-+....+.++|..++..+..++..+.
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~ 86 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIE 86 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777778887877777766664310 0134445555444334466666666666666665543
No 51
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=56.70 E-value=3.1 Score=35.61 Aligned_cols=45 Identities=13% Similarity=-0.057 Sum_probs=34.9
Q ss_pred ceEEEee--CCc------cccccccccccchhhhhccc-----cceEecCCCCccccc
Q psy17920 22 ILSISHF--NLE------QETESCSRFIHGLDSAVKSL-----VAVVADQTKKCQTLY 66 (393)
Q Consensus 22 ~~~i~v~--~p~------k~~~~~s~f~~~~~~~~~~~-----~~~v~rry~df~~l~ 66 (393)
.|.|.|. .|. .+..+||||..+++.+...+ |++++|++|.+.++.
T Consensus 59 ~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~K~~~~ 116 (162)
T 1ocs_A 59 DYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLS 116 (162)
T ss_dssp EEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTCCCSS
T ss_pred EEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCCCCcccc
Confidence 3677774 332 22337999999999999877 999999999999973
No 52
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=56.12 E-value=1.2e+02 Score=27.51 Aligned_cols=125 Identities=16% Similarity=0.239 Sum_probs=72.3
Q ss_pred HHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHhHHhhhhhHHHH------HHH-HHHHH
Q psy17920 188 YKREYQKIGIDR-SHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSMPDILGL------HKD-ILNKK 259 (393)
Q Consensus 188 ~~~~~~~lg~d~-s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ll~s~~~v~~~------~~~-al~k~ 259 (393)
.++....+|..+ ..|++....+|..+..+|+.. ..|...+..|...+.+++++=.. ++. ...++
T Consensus 49 ~A~~Ls~WG~~edddl~DIsdklgvLl~e~ge~e--------~~~a~~~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I 120 (234)
T 3plt_A 49 AAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQ--------DQFIDKYDQYRVTLKSIRNIEASVQPSRDRKEKITDEI 120 (234)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455666777743 358888888888888888653 34778888888888888764221 111 11111
Q ss_pred HHHHHhhhhccccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q psy17920 260 REYEKMTTENKMEANRLQEVLKR---TDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNK 327 (393)
Q Consensus 260 re~erl~~e~k~~~~~ve~~~~~---~e~is~~v~~E~~rF~~ek~~Dfk~~l~~yl~~qi~~~qk~a~~~ 327 (393)
.++... ......+..++++ +|.-+-..-+.+..+.+ .-||..+.--....+++.+|++.--
T Consensus 121 ---~kLk~k-~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR---~~lKEa~~~~f~Al~E~aEK~~ila 184 (234)
T 3plt_A 121 ---AHLKYK-DPQSTKIPVLEQELVRAEAESLVAEAQLSNITR---EKLKAAYSYMFDSLRELSEKFALIA 184 (234)
T ss_dssp ---HHHHHH-CTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHhcc-CCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122111 0112334444433 23322233334444444 4588888888888888888877643
No 53
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=55.08 E-value=3.3 Score=33.61 Aligned_cols=44 Identities=5% Similarity=-0.181 Sum_probs=35.6
Q ss_pred eEEEeeCCc-----cccccccccccchhhhhccccceEecCCCCccccc
Q psy17920 23 LSISHFNLE-----QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 23 ~~i~v~~p~-----k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
|.|.|.... ....+||||..+.+.+...||...+|++|.+.|+.
T Consensus 25 Y~I~v~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g 73 (121)
T 2ar5_A 25 YVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLG 73 (121)
T ss_dssp EEEEEEETTCSSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSS
T ss_pred EEEEEEECCCceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecC
Confidence 677775443 23347899999999999999999999999999984
No 54
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=55.00 E-value=7.1 Score=21.82 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHH
Q psy17920 83 HRKNQLQSFVDY 94 (393)
Q Consensus 83 ~Rr~~L~~fl~r 94 (393)
.|+.+|++||.+
T Consensus 5 aRk~SLqRFleK 16 (21)
T 3ogl_Q 5 ARRASLHRFLEK 16 (26)
T ss_pred hHHHHHHHHHHH
Confidence 588899999874
No 55
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=49.42 E-value=2.1e+02 Score=28.39 Aligned_cols=40 Identities=8% Similarity=-0.066 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHh
Q psy17920 201 HLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKG 240 (393)
Q Consensus 201 ~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ 240 (393)
.+..+...+-...+.++..+...++.-...+.++|+.|..
T Consensus 78 tl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~ 117 (486)
T 3haj_A 78 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQK 117 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4667777777777777766555444333446666666654
No 56
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=49.09 E-value=1.5e+02 Score=26.51 Aligned_cols=51 Identities=4% Similarity=0.218 Sum_probs=40.9
Q ss_pred CCHHHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 340 MEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 340 ~~~~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
....+++.....-+...-.+.++|..+-+.+ .++-..+..|+.-|..||++
T Consensus 162 ~~eeEl~~A~~~fe~~~e~~~~~m~~~~~~~-~e~l~~l~~~v~aQl~y~~~ 212 (240)
T 2z0v_A 162 IPDEEVRQAVEKFEESKELAERSMFNFLEND-VEQVSQLAVFIEAALDYHRQ 212 (240)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHST-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777788899998887 45556999999999999986
No 57
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=47.86 E-value=80 Score=23.20 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=42.6
Q ss_pred CCccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Q psy17920 147 ISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKK----CQTLYKREYQKIGIDRSHLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 147 ~~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk----~~~~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~ 220 (393)
++|.++......+......++..+..|......|..- -...|...|..+-+....+.+.|..++..+..+++.+
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A~~~ 86 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIADKF 86 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777788888888888777766321 0112444444443333335555555555555555444
No 58
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=46.97 E-value=6.3 Score=22.33 Aligned_cols=10 Identities=30% Similarity=0.793 Sum_probs=6.4
Q ss_pred HHHHHHHHHH
Q psy17920 84 RKNQLQSFVD 93 (393)
Q Consensus 84 Rr~~L~~fl~ 93 (393)
|+.+|++||.
T Consensus 1 Rk~SLqRFle 10 (22)
T 3ogk_Q 1 RRASLHRFLE 10 (26)
T ss_pred CchhHHHHHH
Confidence 4566777765
No 59
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=44.86 E-value=1.7e+02 Score=26.19 Aligned_cols=49 Identities=10% Similarity=0.253 Sum_probs=39.2
Q ss_pred HHHHHHhhccChhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17920 343 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQK 391 (393)
Q Consensus 343 ~~~~~~~~r~~~~s~~~~ae~~~f~~~~~~d~~~~~~~~l~~q~~fy~~ 391 (393)
.++...++.-.-.++=...-||-.+..+-.+|-..|-.|+..|..||+.
T Consensus 165 ~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~ 213 (265)
T 2q12_A 165 EDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKM 213 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665566666677788888888899999999999999999985
No 60
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=41.18 E-value=7.5 Score=32.81 Aligned_cols=44 Identities=9% Similarity=-0.065 Sum_probs=34.1
Q ss_pred ceEEEeeCCc---cccccccccccchhhhhccccceEecCCCCccccc
Q psy17920 22 ILSISHFNLE---QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLY 66 (393)
Q Consensus 22 ~~~i~v~~p~---k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~ 66 (393)
.|.|.|.... .+..+||+|..+++.+...+|+.+. ++|.+.|+.
T Consensus 27 ~Y~I~v~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~-plP~K~~~g 73 (154)
T 1xte_A 27 VYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMAL-KIPAKRIFG 73 (154)
T ss_dssp EEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCGGGCC-CCCCSCCSS
T ss_pred EEEEEEEECCEEEEEEeeHHHHHHHHHHHHHHCCCCcc-cCCCccccC
Confidence 4778886532 2234799999999999999998765 599999986
No 61
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=40.19 E-value=71 Score=23.65 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=41.7
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Q psy17920 148 SHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQT----LYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFE 221 (393)
Q Consensus 148 ~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~----~~~~~~~~lg~d~s~L~~al~~lg~~~~~i~~~~~ 221 (393)
++..++.....+......|+..|..|......|..--.+ .|...+.++-.....|..+|..++..+...+..+.
T Consensus 6 ~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~~y~ 83 (94)
T 3fav_B 6 NFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAMA 83 (94)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777778888888888777776665321111 23333333333334577777777777777665443
No 62
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=39.91 E-value=61 Score=24.86 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=47.7
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcc----chhHHHHHHHHHHHHHHHHHHHH
Q psy17920 148 SHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKK--CQTLYKREYQKIGI----DRSHLRDALKKTGDTYNELGKLF 220 (393)
Q Consensus 148 ~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk--~~~~~~~~~~~lg~----d~s~L~~al~~lg~~~~~i~~~~ 220 (393)
++..++.....+......|+..|..|......|..- =.+.-...|...-. ....|..+|..++......+..+
T Consensus 12 ~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a~~~y 90 (103)
T 4i0x_B 12 DLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTAHGAY 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788888888888888888888777653 22333344444333 23457788888888777766433
No 63
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=38.08 E-value=11 Score=30.75 Aligned_cols=46 Identities=11% Similarity=-0.050 Sum_probs=35.1
Q ss_pred CceEEEeeCCc---cccccccccccchhhhhccccceEecCCCCcccccC
Q psy17920 21 HILSISHFNLE---QETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYK 67 (393)
Q Consensus 21 ~~~~i~v~~p~---k~~~~~s~f~~~~~~~~~~~~~~v~rry~df~~l~~ 67 (393)
-.|.|.|..+. .+..+||||..+.+.+...+|.. .+++|.+.|+..
T Consensus 37 ~~Y~I~v~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~-~p~lP~K~~~g~ 85 (130)
T 3p0c_A 37 TVYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKID-KNLLPPKKIIGK 85 (130)
T ss_dssp CEEEEEEECSSCEEEEEEEHHHHHHHHHHHHHTTSSC-TTSCCCCCCCSC
T ss_pred EEEEEEEEECCeEEEEEehHHHHHHHHHHHHHHcCCC-CCCCCCcccccc
Confidence 45889998752 22237999999999999888754 688999988854
No 64
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=35.79 E-value=9.3 Score=31.61 Aligned_cols=45 Identities=7% Similarity=-0.192 Sum_probs=33.8
Q ss_pred eEEEeeCC----ccccccccccccchhhhhcccc--------ceEecCCCCcccccC
Q psy17920 23 LSISHFNL----EQETESCSRFIHGLDSAVKSLV--------AVVADQTKKCQTLYK 67 (393)
Q Consensus 23 ~~i~v~~p----~k~~~~~s~f~~~~~~~~~~~~--------~~v~rry~df~~l~~ 67 (393)
|.|.|.-. -.+..+||+|..+++.+...|| .+++|++|.+.|+..
T Consensus 40 Y~I~v~~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~K~~~~~ 96 (143)
T 1h6h_A 40 FVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVGV 96 (143)
T ss_dssp EEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCCSSC
T ss_pred EEEEEEEcCCCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCCCcccCc
Confidence 77888522 1222369999999999998888 357899999999854
No 65
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=33.51 E-value=2.9e+02 Score=25.49 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHHh
Q psy17920 200 SHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYKG 240 (393)
Q Consensus 200 s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~~ 240 (393)
..|..+...+-...+.++..+..-++.-...+.++|..+..
T Consensus 75 gtl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~ 115 (337)
T 2x3v_A 75 GSLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQK 115 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777776667776665554444333446666666644
No 66
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=32.39 E-value=2.9e+02 Score=25.16 Aligned_cols=40 Identities=8% Similarity=-0.054 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHH
Q psy17920 200 SHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYK 239 (393)
Q Consensus 200 s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~ 239 (393)
..+..+...+-...+.++..+..-++.-...+.++|+.|.
T Consensus 84 gtl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~ 123 (312)
T 3abh_A 84 GTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQ 123 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777766555444433334555665553
No 67
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=31.99 E-value=90 Score=23.53 Aligned_cols=76 Identities=11% Similarity=0.138 Sum_probs=43.3
Q ss_pred CccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccchhHHHHHHHHHHHHHHHHHHHHhcC
Q psy17920 148 SHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQK----IGIDRSHLRDALKKTGDTYNELGKLFEEQ 223 (393)
Q Consensus 148 ~~~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~~----lg~d~s~L~~al~~lg~~~~~i~~~~~~Q 223 (393)
++..++.....+......|+..+..|......|..--.+.-...|.. +-.....|..+|..++..+...+..+.+.
T Consensus 8 ~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~~~ 87 (101)
T 3fav_A 8 DAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRA 87 (101)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777776665532111122223333 22233458888888888888888766543
No 68
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=25.17 E-value=1.6e+02 Score=22.18 Aligned_cols=47 Identities=6% Similarity=0.246 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHhhhhhccCCHHHHHHHhhcc
Q psy17920 302 VSQINAAMKSFLTEQINFYQKDILNKKREYEKMTTENKMEANRLQEVLKRT 352 (393)
Q Consensus 302 ~~Dfk~~l~~yl~~qi~~~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~ 352 (393)
...++.+|..|+..+-+ +..-.-.+..+++. |.+|++++.-.+-+.|
T Consensus 8 ~~~Y~~iL~~yl~~~~E---~~Ly~~q~fs~~~i-ek~i~PEeiV~iHk~~ 54 (84)
T 1w53_A 8 EQRYHQLLSRYIAELTE---TSLYQAQKFSRKTI-EHQIPPEEIISIHRKV 54 (84)
T ss_dssp HHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHH-HTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccH---HHHHHHHHhhHHHH-HcCCCHHHHHHHHHHH
Confidence 35688889999888876 33444444444444 7899999998887765
No 69
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=24.22 E-value=4.3e+02 Score=24.40 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHH
Q psy17920 200 SHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYK 239 (393)
Q Consensus 200 s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~ 239 (393)
..|..+...+-...+.++..+...++.-...+.++|+.|.
T Consensus 75 gsl~~aw~~i~~e~e~~a~~H~~~a~~l~~~v~~~l~~~~ 114 (320)
T 3m3w_A 75 GTLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQ 114 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777777777666655544455667777664
No 70
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=24.01 E-value=3.7e+02 Score=23.68 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy17920 293 EINHFHQEQVSQINAAMKSFLT 314 (393)
Q Consensus 293 E~~rF~~ek~~Dfk~~l~~yl~ 314 (393)
.++.++.+|..-++.+|..|+.
T Consensus 203 ~lQ~le~~R~~~lk~~l~~~~~ 224 (276)
T 2v0o_A 203 KFQDIEETHLIHIKEIIGSLSN 224 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555553
No 71
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=23.59 E-value=2.3e+02 Score=21.06 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=37.8
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccchhHHHHHHHHHHHHHHHHHHHHhc
Q psy17920 150 FNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQ----KIGIDRSHLRDALKKTGDTYNELGKLFEE 222 (393)
Q Consensus 150 ~~~d~~~d~f~~~l~~L~~~l~~L~~~~~~l~kk~~~~~~~~~~----~lg~d~s~L~~al~~lg~~~~~i~~~~~~ 222 (393)
.++...-..+......|...|..|......|..--.+.-...|. ++-.....|..+|..++..+...+..+.+
T Consensus 3 eel~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~Aa~af~~~~~~w~~~a~~l~~~L~~i~~~l~~aa~~y~~ 79 (94)
T 4i0x_A 3 DEVGALSKFAASLADQMRAGSNSLDRDVQSLFGVWKGSAADAYRSGWDEMQDGATKVWNALTDIASTLGSNAAAFHA 79 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666777766666665553210112222333 22222345777777777777766654433
No 72
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=23.24 E-value=18 Score=29.83 Aligned_cols=45 Identities=0% Similarity=-0.225 Sum_probs=34.1
Q ss_pred eEEEeeCCc----cccccccccccchhhhhccccce---------EecCCCCcccccC
Q psy17920 23 LSISHFNLE----QETESCSRFIHGLDSAVKSLVAV---------VADQTKKCQTLYK 67 (393)
Q Consensus 23 ~~i~v~~p~----k~~~~~s~f~~~~~~~~~~~~~~---------v~rry~df~~l~~ 67 (393)
|.|.|.-.. ....+||||..+++.+...||.. ++|++|.+.|+.+
T Consensus 26 Y~I~V~~~~~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP~K~~~~~ 83 (141)
T 1kq6_A 26 YMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDG 83 (141)
T ss_dssp EEEEEEETTCCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCCCCCS
T ss_pred EEEEEEEcCCCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCCCccccCC
Confidence 777776321 12236899999999999888853 7899999999875
No 73
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=20.88 E-value=5e+02 Score=24.03 Aligned_cols=40 Identities=8% Similarity=-0.054 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccccccchhHHHHHHH
Q psy17920 200 SHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVLHIYK 239 (393)
Q Consensus 200 s~L~~al~~lg~~~~~i~~~~~~Q~~~d~~~l~e~L~ey~ 239 (393)
..|..+...+-...+.++..+..-++.-...+.++|+.|.
T Consensus 84 gtl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~ 123 (350)
T 3aco_A 84 GTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQ 123 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466676666666666666554444433334555665553
No 74
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=20.45 E-value=2.7e+02 Score=20.79 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=24.7
Q ss_pred hHHHHHhHHHHHHhhhhhccCCHHHHHHHhhccChh
Q psy17920 320 YQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTV 355 (393)
Q Consensus 320 ~qk~a~~~~~~~~~l~~e~k~~~~~~~~~~~r~~~~ 355 (393)
++..+..-....+.|...|..++.++..|+.+++.+
T Consensus 55 ~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l 90 (119)
T 3uun_A 55 HQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLL 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 334444555556677777777888888888887776
No 75
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=20.37 E-value=2.4e+02 Score=20.19 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17920 274 NRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSF 312 (393)
Q Consensus 274 ~~ve~~~~~~e~is~~v~~E~~rF~~ek~~Dfk~~l~~y 312 (393)
.-+.+++..+|.+...-+.|++.|-..|..++.......
T Consensus 9 ~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~ 47 (77)
T 3trt_A 9 AAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRN 47 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888999999999999999999988887766554443
Done!