RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17920
(393 letters)
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 186 bits (473), Expect = 1e-55
Identities = 98/282 (34%), Positives = 151/282 (53%), Gaps = 18/282 (6%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE+FI+ R +LQ+++ +CRHPV+ S V+Q F+ DEK WK GKR AE+D
Sbjct: 85 QVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDE 144
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
L G +F +E + +EQ+ E+ +F +D VK L+ V + K+C +
Sbjct: 145 LAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPK 204
Query: 191 EYQKIGI---------------DRSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
EYQKIG + L DA+ + G TY E+ L EQPK D L +
Sbjct: 205 EYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECN 264
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
H YKG + PDI+G HK + K +E +K+ +K+ Q ++KR +SYAL E+N
Sbjct: 265 HEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMN 324
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQK--DILNK-KREYEKM 334
HFH ++ N+ ++ +L +Q+ FY+ + L + + M
Sbjct: 325 HFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM 366
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
{Homo sapiens}
Length = 386
Score = 181 bits (460), Expect = 1e-53
Identities = 90/267 (33%), Positives = 147/267 (55%), Gaps = 15/267 (5%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKAGKRMAEKDN 130
Q GR+EE FIE RK +L ++D++ HPVL + +QHF++C D+K+WK GKR AEKD
Sbjct: 105 QATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEKDE 164
Query: 131 LLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 190
++G S L + P ++E ++ F +D +V L V ++ +K +++
Sbjct: 165 MVGASFLLTFQIPTEHQDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRK 224
Query: 191 EYQKIGID---------------RSHLRDALKKTGDTYNELGKLFEEQPKLDWEPLGDVL 235
E+QK+G L A+ TG TY +G++F EQPK D + D L
Sbjct: 225 EFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTL 284
Query: 236 HIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEIN 295
+Y+G++++ PDI+ L K K +E ++M+ E +M + + +R V +AL E+N
Sbjct: 285 SLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRMVQDEADGIRRRCRVVGFALQAEMN 344
Query: 296 HFHQEQVSQINAAMKSFLTEQINFYQK 322
HFHQ + M+++L +QI FYQ+
Sbjct: 345 HFHQRRELDFKHMMQNYLRQQILFYQR 371
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 146
Score = 66.4 bits (162), Expect = 2e-13
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 61 KCQTLYKREYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITC-TDEKRW 119
K G +EE FIE R+ L+ F++ + HP+ F+ ++ +
Sbjct: 77 KALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNY 136
Query: 120 KAGKRM 125
GK
Sbjct: 137 VPGKSG 142
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur
genomics consortium, protein transport, transport; 1.70A
{Homo sapiens}
Length = 138
Score = 60.9 bits (148), Expect = 1e-11
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRW 119
+ R+ + FIE R+ L F++ + HP L + ++ F+T +
Sbjct: 81 GMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELS 129
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P
transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Length = 115
Score = 60.1 bits (146), Expect = 1e-11
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 72 KIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWK 120
K+ +E R+ QL+ ++ V + P+L S + F+ ++ +
Sbjct: 66 KLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQ 114
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices,
proline rich loop, protein transport; NMR {Homo sapiens}
Length = 128
Score = 59.1 bits (143), Expect = 4e-11
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 60 KKCQTLYKREYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTD 115
K + K + K +F+E R+ L+ ++ + HP + + P + F+ +
Sbjct: 73 KSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE 128
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 8e-11
Identities = 62/477 (12%), Positives = 130/477 (27%), Gaps = 136/477 (28%)
Query: 27 HFNLE-QETESCSRFI--HGLDSAVKSL-VAVVADQTKKCQTLYKREYQKI---GRYEEQ 79
H + E E + + I D+ V + V D K L K E I
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSG 63
Query: 80 -------FIEHRKNQLQSFV------DY---------VCRHPVLCRSPVWQHFITCTDEK 117
+ ++ +Q FV +Y R P S + + +I D +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP----SMMTRMYIEQRD-R 118
Query: 118 RWKAGKRMAEKDNLLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKS-LVAV 176
+ + A K N+ +L + L + + + I G+ + K+ +
Sbjct: 119 LYNDNQVFA-KYNVSRLQPYLKLRQ--------ALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 177 VADQTK---------------KC----------QTLYKREYQKIGIDRSHLRDALKKTGD 211
V K C Q L + H + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 212 TYNELGKLFEEQPK------LD--WEPLGDVLHIY----KGIIT----SMPDILGL---- 251
EL +L + +P L + + K ++T + D L
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 252 HKDILNKKREYEKMTTEN------KMEANRLQEVLKRTDTVSYALLGE--------INHF 297
H + + ++ L + T+ +++ E +++
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 298 HQEQVSQINAAMKSFL-----TEQINFYQ------KD---------IL-NKKREYEKMTT 336
++ ++S L E + ++ + + M
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 337 ENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQIN--AAMKSFLTEQINFYQK 391
NK+ L V K+ + I + E ++ A+ + + N +
Sbjct: 408 VNKLHKYSL--VEKQPKESTI----SIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Score = 56.4 bits (135), Expect = 1e-08
Identities = 62/500 (12%), Positives = 145/500 (29%), Gaps = 166/500 (33%)
Query: 3 VPPGDLNIVELIGLKVMDHILSI-SHFNLEQETESCSRFIHGLDSAVKS-LVAVVADQTK 60
+++ ++ LK+ +L + N+ I G+ + K+ + V K
Sbjct: 126 FAKYNVSRLQPY-LKLRQALLELRPAKNV---------LIDGVLGSGKTWVALDVCLSYK 175
Query: 61 ---------------KC----------QTLYKREYQKIGRYEEQF--IEHRKNQLQSFVD 93
C Q L + + I+ R + +Q+ +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 94 YVCRHPVLCRS----------PVWQHF-ITC-----TDEKRWKAGKRMAEKDNLLGPSLF 137
+ + W F ++C T R + + L
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT---------RFKQVTDFLS---- 282
Query: 138 LAIETPERSISHFNLE-QETESCSRFIHGLDSAVKSL-----------VAVVADQTKKCQ 185
A T S+ H ++ E S + LD + L ++++A+ +
Sbjct: 283 -AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 186 TLYKREYQKIGIDRSHLRDALKKTGDT---------YNELGKLFEEQPKL---------- 226
+ ++ + D+ L ++ + + ++ L +F +
Sbjct: 342 ATWDN-WKHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWF 397
Query: 227 ----------------------DWEPLGDVLH-IYKGIITSMPDILGLHKDILNKKREYE 263
+ + IY + + + LH+ I++ +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 264 KMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMK------SFLT--- 314
+++ + D Y+ +G +H + + + FL
Sbjct: 458 TFDSDDL--------IPPYLDQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 315 -----------------EQINFYQKDILNKKREYEKMTTENKMEANRLQEVL---KRTDT 354
+Q+ FY+ I + +YE++ +++E L K TD
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 355 VSYALLGEINHFHQEQVSQI 374
+ AL+ E +E Q+
Sbjct: 568 LRIALMAEDEAIFEEAHKQV 587
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase;
1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Length = 154
Score = 54.6 bits (131), Expect = 3e-09
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTD-----EKRWKAGKRMAEK 128
++ FI+ R+ L F+ + R+P L P + F+ + +R K
Sbjct: 74 DNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPRHQSDPSEDEDERSTSK 133
Query: 129 DNLLGPSLFLAIETP 143
+ ++ L
Sbjct: 134 PHSTSRNINLGPTGN 148
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein;
HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP:
d.189.1.1 PDB: 1ocu_A*
Length = 162
Score = 52.7 bits (126), Expect = 1e-08
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 74 GRYEEQFIEHRKNQLQSFVDYVCRHPVLCR-SPVWQHFITCTD 115
R+ + IE R+ L +++ V HP+L S V FI
Sbjct: 117 NRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK 159
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol,
PI(4,5)P2, cell adhesion, protein transport; 1.47A
{Rattus norvegicus} PDB: 3hpb_A
Length = 161
Score = 43.6 bits (102), Expect = 2e-05
Identities = 7/51 (13%), Positives = 19/51 (37%)
Query: 71 QKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRWKA 121
Q++ + + + F+ + HPVL + + F+ + +
Sbjct: 107 QELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRR 157
>3p0c_A Nischarin; structural genomics, structural genomics consortium,
SGC, PX signaling protein; 2.27A {Homo sapiens}
Length = 130
Score = 40.2 bits (94), Expect = 1e-04
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 73 IGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHF 110
IG+ +E R+ L+ ++ + V HF
Sbjct: 83 IGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHF 120
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain,
phosphoinositide binding, endocytosis/exocytosis
complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Length = 117
Score = 37.5 bits (87), Expect = 0.001
Identities = 7/47 (14%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 72 KIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCR---SPVWQHFITCTD 115
+ + + I+ R+ L+ F++ + R + + Q F+ +
Sbjct: 69 QRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSK 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.002
Identities = 41/306 (13%), Positives = 80/306 (26%), Gaps = 125/306 (40%)
Query: 13 LIGLKVMDHILSISHF-----NLEQETESCSRFIHGLDSAVKSLVAVVA----------- 56
LIG+ + ++H+ L ++ G + LV VA
Sbjct: 240 LIGV------IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 57 DQTKKCQTLY----KREYQKIGRYE------EQFIEH--------------RKNQLQSFV 92
+K T+ R Y+ E +E+ + Q+Q +V
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 93 DYVCRH-PV-------LCRSPVWQHFITC---------------------TDEKRWKAGK 123
+ H P L ++ + D+ R +
Sbjct: 354 NKTNSHLPAGKQVEISLVNGA--KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 124 RMAEKDNLLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQTKK 183
R K L + FL + +P F+ S L A + +
Sbjct: 412 R---K--LKFSNRFLPVASP------FH--------SHL---LVPASDLINKDLVKNN-- 447
Query: 184 CQTLYKREYQKIGIDRSHLRDALKKTGD-------TYNELGKLFE---EQPKLDWEPL-- 231
+ + ++ + T D + + ++ + P + WE
Sbjct: 448 -----------VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP-VKWETTTQ 495
Query: 232 GDVLHI 237
HI
Sbjct: 496 FKATHI 501
Score = 38.5 bits (89), Expect = 0.004
Identities = 42/226 (18%), Positives = 74/226 (32%), Gaps = 78/226 (34%)
Query: 218 KLFEEQPKLDWEPLG-DVLHIYKGIITSMPDILGLH------KDILNKKRE-YEKMTTEN 269
++ + G +L I + + P L +H K I RE Y M E
Sbjct: 1644 DVWNRADNHFKDTYGFSILDI----VINNPVNLTIHFGGEKGKRI----RENYSAMIFET 1695
Query: 270 KMEAN-RLQEVLKRTD--TVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILN 326
++ + +++ K + + SY E Q +Q A+ L E+ F +D+
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP--AL--TLMEKAAF--EDL-- 1747
Query: 327 KKR---------------EY-------EKMTTENKMEANRLQEVLKRTDTVSYAL----L 360
K + EY + M+ E + V R T+ A+ L
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIE---SLVEV--VFYRGMTMQVAVPRDEL 1802
Query: 361 GEINH-------------FHQEQ----VSQINAAMKSFLTEQI-NF 388
G N+ F QE V ++ + +I N+
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV--EIVNY 1846
Score = 38.1 bits (88), Expect = 0.006
Identities = 35/231 (15%), Positives = 66/231 (28%), Gaps = 78/231 (33%)
Query: 3 VPPGDLNIVELIGLKVMDHILSISHFNLEQETESCSRF---------IH-----GLDSAV 48
+PP L V +LSIS+ EQ + ++ + G + V
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 49 -----KSLVAVV-----------ADQTKKCQTLY-KREYQKIGRYEEQFIE-----HR-- 84
+SL + DQ++ + +R K+ ++ +F+ H
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSR---IPFSER---KL-KFSNRFLPVASPFHSHL 431
Query: 85 -KNQLQSFVDYVCRHPVLCRS-----PVWQHFITCTDEKRWKAGKRMAEKDNLLGPSLFL 138
+ ++ V + PV + T G + + +
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPV---YDTFD-------GSDLRVLSGSISERIVD 481
Query: 139 AI--------ETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVADQT 181
I T + +H L+ F G S + L D T
Sbjct: 482 CIIRLPVKWETTTQFKATHI-LD--------FGPGGASGLGVLTHRNKDGT 523
Score = 37.3 bits (86), Expect = 0.009
Identities = 45/272 (16%), Positives = 84/272 (30%), Gaps = 80/272 (29%)
Query: 23 LSISH--------------FNLEQETESCSRFIHGLDSAVKSLVAVVADQTKKCQTLYKR 68
L++SH F Q E +F L + A D+ L +
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQE---QFNKILPEPTEGFAA--DDEPTTPAELVGK 63
Query: 69 ---------EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFITCTDEKRW 119
E K+G++++ L F + L + + H + +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVL----NLCLTEF-----ENCYLEGNDI--HALAAKLLQ-- 110
Query: 120 KAGKRMAEKDNLLGPSLFLAIETPERSISHFNLEQETESCSRFIHGLDSAVKSLVAVVAD 179
+ + + L+ + A +R +S S + LVA+
Sbjct: 111 ENDTTLVKTKELI-KNYITARIMAKRPFDK-------KSNSALFRAVGEGNAQLVAIFGG 162
Query: 180 Q--TKKC----QTLYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFEEQPKL------- 226
Q T + LY+ Y + D +K + +T +EL + + K+
Sbjct: 163 QGNTDDYFEELRDLYQT-Y------HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 227 -DW------EPLGDVLHIYKGIITSMPDILGL 251
+W P D L I S P ++G+
Sbjct: 216 LEWLENPSNTPDKDYL---LSIPISCP-LIGV 243
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex,
transport protein, phosphatidylinositol 3-phosphate
binding, nucleotide-binding; 2.20A {Homo sapiens}
Length = 134
Score = 34.8 bits (80), Expect = 0.013
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 73 IGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRS-PVWQHFITCTDEKR 118
G +E+ I R++ L+ ++ + + P+ + + T K
Sbjct: 71 FGNKDERVIAERRSHLEKYLRDFFSVMLQSATSPLHINKVGLTLSKH 117
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing
alpha polypeptide; PI3K, PX domain, transferase; 2.6A
{Homo sapiens}
Length = 140
Score = 33.8 bits (77), Expect = 0.033
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 77 EEQFIEHRKNQLQSFVDYVCR-HPVLCRSPVWQHFITCTDEKRWKAG 122
+ RK +L S++ + + + F G
Sbjct: 92 IKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPLLRDEKAEG 138
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607,
structural genomics,protein structure initiative PSI;
NMR {Homo sapiens}
Length = 128
Score = 32.5 bits (74), Expect = 0.086
Identities = 3/37 (8%), Positives = 16/37 (43%)
Query: 72 KIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQ 108
++ + + +E R+ L++++ + + +
Sbjct: 75 RLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELLE 111
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo
sapiens} PDB: 2rea_A 2red_A
Length = 121
Score = 31.8 bits (72), Expect = 0.12
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 77 EEQFIEHRKNQLQSFVDYVCR-HPVLCRSPVWQHFITCTDE 116
+ RK +L S++ + + + F +
Sbjct: 77 IKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHGSHH 117
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 33.0 bits (76), Expect = 0.14
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 149 HFNLEQETESCSRFI-HGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGIDRSHL 202
F ++++ E+ +FI L K + K+ Y+ + GI + +
Sbjct: 57 SFGIKEDLENLDQFIGPPLHDTFKEYYKFEDKKAKEAVEKYREYFADKGIFENKI 111
Score = 29.9 bits (68), Expect = 1.1
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 19 MDHILSISHFNLEQETESCSRFI-HGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGRYE 77
+ + L+ F ++++ E+ +FI L K + K+ Y+ + G +E
Sbjct: 51 IQYSLN--SFGIKEDLENLDQFIGPPLHDTFKEYYKFEDKKAKEAVEKYREYFADKGIFE 108
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils,
endocytosis/exocytosis, protein complex,
endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A
2rnd_A
Length = 251
Score = 31.0 bits (69), Expect = 0.56
Identities = 18/148 (12%), Positives = 48/148 (32%), Gaps = 8/148 (5%)
Query: 183 KCQTLYKREYQKIGIDRSHLRDALKKTGDTYNELGKLFEEQPKLDW-EPLGDVLHIYKGI 241
+ Q++ RD K + + L + ++ + L + I
Sbjct: 87 EASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDI 146
Query: 242 ITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKRT-------DTVSYALLGEI 294
+ + D + + YE + T K + ++ + + + ++ L E+
Sbjct: 147 KSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEEL 206
Query: 295 NHFHQEQVSQINAAMKSFLTEQINFYQK 322
+V +S + NF+++
Sbjct: 207 PSLWNSRVGFYVNTFQSIAGLEENFHKE 234
>3d7i_A Carboxymuconolactone decarboxylase family protein; 1591455,
structural genomics, JOI for structural genomics, JCSG;
HET: MSE PG4; 1.75A {Methanocaldococcus jannaschii}
Length = 105
Score = 29.0 bits (65), Expect = 0.89
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Query: 165 GLDSAVKSLVAVVADQTKKCQTLYKREYQKIGIDRSHLRDALKKTGDTYNEL 216
LD + L+A+ ++ + I ++ A+K+ G T E+
Sbjct: 38 TLDYKTQKLIAIGIVASRCDEV---------AI-EKQMKSAMKELGITKEEI 79
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain,
NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo
sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Length = 141
Score = 29.2 bits (65), Expect = 1.3
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 78 EQFIEHRKNQLQSFVDYVCRHPV-LCRSPVWQHF 110
++ E+R+ L + + P + R P F
Sbjct: 84 QRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDF 117
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes,
DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo
sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Length = 404
Score = 29.6 bits (66), Expect = 1.7
Identities = 18/155 (11%), Positives = 49/155 (31%), Gaps = 14/155 (9%)
Query: 225 KLDWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEKMTTENKMEANRLQEVLKR-- 282
+L +V +++ G+ + + + L + Y K + +++ L + R
Sbjct: 184 QLSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRL-PAYLTIQMVRFF 242
Query: 283 -----------TDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKDILNKKREY 331
V + L+ ++ ++ + + +S + + N +
Sbjct: 243 YKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKK 302
Query: 332 EKMTTENKMEANRLQEVLKRTDTVSYALLGEINHF 366
E K E + + + Y L + H
Sbjct: 303 SSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQ 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 29.2 bits (65), Expect = 3.0
Identities = 29/202 (14%), Positives = 72/202 (35%), Gaps = 24/202 (11%)
Query: 212 TYNELGKLFEEQPKLDWEPLGDVLHIYKGIITSM------PDILGLHKDILNKKREYEKM 265
T+N L K++ + + E Y + P + + + E +
Sbjct: 875 THNALAKIYIDSNN-NPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINV 933
Query: 266 TTENKMEANRLQEVLKRTDTVSYA-LLGEINHFHQEQVSQ--------------INAAMK 310
EN + + + +++R D + +L E N + + + Q ++ +K
Sbjct: 934 CNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVK 993
Query: 311 SFLTEQINFYQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVS-YALLGEINHFHQE 369
+F+T + ++L K + +E++ N L + D + ++++
Sbjct: 994 AFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAP 1053
Query: 370 QVSQINAAMKSFLTEQINFYQK 391
++ I A E ++K
Sbjct: 1054 DIANI-AISNELFEEAFAIFRK 1074
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics,
northeast structural genomics consortiu PSI-biology; NMR
{Lactobacillus plantarum}
Length = 160
Score = 27.3 bits (61), Expect = 6.4
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 4/24 (16%)
Query: 193 QKIGIDRSHLRDALKKTGDTYNEL 216
++ GI D L +T Y
Sbjct: 103 EQAGIVV----DELVQTVKNYQGY 122
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 8.0
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 299 QEQVSQINAAMKSFLTEQINFYQKDILNKKREYEKMTTENKMEANRLQE 347
++++ +++AA K E +KD+ + + +NK NR+ +
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK-INNRIAD 142
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant,
pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides}
PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A
2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A
1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Length = 374
Score = 27.5 bits (60), Expect = 8.4
Identities = 10/99 (10%), Positives = 34/99 (34%), Gaps = 11/99 (11%)
Query: 227 DWEPLGDVLHIYKGIITSMPDILGLHKDILNKKREYEK-----------MTTENKMEANR 275
+ + I M + + D+++ +E++ + ++
Sbjct: 199 EQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEA 258
Query: 276 LQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLT 314
L+++ + T S ++ + + + I M ++T
Sbjct: 259 LEKLTQDTLHSSKQMVAVFSDKDPQVMDTIECFMHGYVT 297
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,812,154
Number of extensions: 336245
Number of successful extensions: 894
Number of sequences better than 10.0: 1
Number of HSP's gapped: 880
Number of HSP's successfully gapped: 46
Length of query: 393
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 297
Effective length of database: 4,021,377
Effective search space: 1194348969
Effective search space used: 1194348969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)