RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17920
(393 letters)
>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 143
Score = 40.1 bits (93), Expect = 8e-05
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 39 RFIHGLDSAVKSLVAVVADQTKKCQTLYKREYQKIGRYEEQFIEHRKNQLQSFV-DYVCR 97
R H L S ++ + + TL + +++ E R L +++ +
Sbjct: 59 RQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSL 118
Query: 98 HPVLCRSPVWQHFITCTDE 116
+ + F +
Sbjct: 119 PVWVLMDEDVRIFFYQSPY 137
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 116
Score = 37.7 bits (87), Expect = 4e-04
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 69 EYQKIGRYEEQFIEHRKNQLQSFVDYVCRHPVLCRSPVWQHFI 111
+ ++ FI+ R+ L F+ + R+P L P + F+
Sbjct: 66 KRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFL 108
>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 117
Score = 35.8 bits (82), Expect = 0.002
Identities = 6/43 (13%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 72 KIGRYEEQFIEHRKNQLQSFVDYVCRHPV---LCRSPVWQHFI 111
+ + + I+ R+ L+ F++ + + + Q F+
Sbjct: 69 QRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFL 111
>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 132
Score = 36.2 bits (83), Expect = 0.002
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 75 RYEEQFIEHRKNQLQSFVDYVCRHPVLCR-SPVWQHFITCTD 115
R+ + IE R+ L +++ V HP+L S V FI
Sbjct: 89 RFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK 130
>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 140
Score = 35.5 bits (81), Expect = 0.003
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 72 KIGRYEEQFIEHRKNQLQSFVDYVCRHPV-LCRSPVWQHFITCTDE 116
++ E+R+ L + + P + R P F +
Sbjct: 77 PKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPD 122
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 237
Score = 27.0 bits (59), Expect = 3.4
Identities = 9/114 (7%), Positives = 44/114 (38%), Gaps = 13/114 (11%)
Query: 291 LGEINHFHQEQVSQIN----AAMKSFLTEQINFYQKDILNKKREYEKM--------TTEN 338
+ E++ ++ +++ + + Q + + ++ E +
Sbjct: 111 MRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQG 170
Query: 339 KMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKSFLTEQINFYQKS 392
K+ L++ L++ D + + + + Q++ + + + Q+ +++++
Sbjct: 171 KIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQ-LSALVQAQLEYHKQA 223
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 27.0 bits (58), Expect = 4.2
Identities = 12/114 (10%), Positives = 33/114 (28%)
Query: 252 HKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAAMKS 311
+++ Y + + K V + L+ ++ ++ + + +S
Sbjct: 213 KSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRS 272
Query: 312 FLTEQINFYQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINH 365
+ + N + E K E + + + Y L + H
Sbjct: 273 KFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTH 326
>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA
{Caulobacter crescentus [TaxId: 155892]}
Length = 104
Score = 25.7 bits (56), Expect = 4.7
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 197 IDRSHLRDALKKTGDTYNELGKLFEEQPKL-------DWEPLGDVLHIYKG 240
+D ++L +E+ LF EQ L D +H KG
Sbjct: 3 VDFAYLEGFAAGDFAVVDEVLALFREQAALWAPMLDPTHPGWKDAVHTVKG 53
>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 522
Score = 26.6 bits (58), Expect = 5.6
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 320 YQKDILNKKREYEKMTTENKMEANRLQEVLKRTDTVSYALLGEINHFHQEQVSQINAA 377
Y+ + K+ + E K +++ EV + T T Y E+N F +E ++ +N A
Sbjct: 19 YKDMLAKKRDGF-----EEKYPQDKIDEVFQWTTTKEYQ---ELN-FQREALT-VNPA 66
>d1knca_ a.152.1.1 (A:) Antioxidant defense protein AhpD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 174
Score = 26.0 bits (57), Expect = 7.4
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 164 HGLDSAVKSLVAVVADQTKKCQ---TLYKREYQKIGIDRSHLRDALK 207
G+ A L + C ++ + +G+DR + +ALK
Sbjct: 109 PGIPKANFELWSFAVSAINGCSHCLVAHEHTLRTVGVDREAIFEALK 155
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
subtilis [TaxId: 1423]}
Length = 271
Score = 25.7 bits (55), Expect = 9.7
Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 5/89 (5%)
Query: 43 GLDSAVKSLVAVVA-----DQTKKCQTLYKREYQKIGRYEEQFIEHRKNQLQSFVDYVCR 97
G DS + +A +A ++ Q + R + E+ K
Sbjct: 48 GQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQQDEDDAQLALKFIKPDKSWKFDI 107
Query: 98 HPVLCRSPVWQHFITCTDEKRWKAGKRMA 126
+ T + G A
Sbjct: 108 KSTVSAFSDQYQQETGDQLTDFNKGNVKA 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,413,864
Number of extensions: 65203
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 19
Length of query: 393
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,213,086
Effective search space: 371204316
Effective search space used: 371204316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)