BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17925
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase
pdb|1K7H|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase
Length = 476
Score = 80.9 bits (198), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 5 VSDIDGLPYSTLLYSNGPGY----SHPRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVP 60
+SD+D Y+ L Y +GPGY R P+ D N + S P+H ATH G DV
Sbjct: 379 ISDLDDRRYTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSATHDGTDVG 438
Query: 61 VFSSGPLASVLLTGTMDQSYIPHAIAYIACIGEYRERCN 99
++ +GP A L TG +++YIPHA+AY AC+G R C+
Sbjct: 439 IWVNGPFAH-LFTGVYEENYIPHALAYAACVGTGRTFCD 476
>pdb|1SHN|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHN|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHQ|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
pdb|1SHQ|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
Length = 478
Score = 79.7 bits (195), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 5 VSDIDGLPYSTLLYSNGPGY----SHPRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVP 60
+SD+D Y+ L Y +GPGY R P+ D N + S P+H TH G DV
Sbjct: 379 ISDLDDRRYTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSVTHDGTDVG 438
Query: 61 VFSSGPLASVLLTGTMDQSYIPHAIAYIACIGEYRERCN 99
++ +GP A L TG +++YIPHA+AY AC+G R C+
Sbjct: 439 IWVNGPFAH-LFTGVYEENYIPHALAYAACVGTGRTFCD 476
>pdb|3MK0|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK1|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK2|A Chain A, Placental Alkaline Phosphatase Complexed With Phe
pdb|2GLQ|A Chain A, X-Ray Structure Of Human Alkaline Phosphatase In Complex
With Strontium
pdb|1ZEF|A Chain A, Structure Of Alkaline Phosphatase From Human Placenta In
Complex With Its Uncompetitive Inhibitor L-Phe
pdb|1ZEB|A Chain A, X-ray Structure Of Alkaline Phosphatase From Human
Placenta In Complex With 5'-amp
Length = 484
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 9 DGLPYSTLLYSNGPGY-----SHPRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFS 63
D Y+ LLY NGPGY + P + S S G S VP TH+GEDV VF+
Sbjct: 384 DRKAYTVLLYGNGPGYVLKDGARPDVTESES--GSPEYRQQSAVPLDEETHAGEDVAVFA 441
Query: 64 SGPLASVLLTGTMDQSYIPHAIAYIACIGEY 94
GP A L+ G +Q++I H +A+ AC+ Y
Sbjct: 442 RGPQAH-LVHGVQEQTFIAHVMAFAACLEPY 471
>pdb|1ZED|A Chain A, Alkaline Phosphatase From Human Placenta In Complex With
P- Nitrophenyl-Phosphonate
Length = 484
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 9 DGLPYSTLLYSNGPGY-----SHPRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFS 63
D Y+ LLY NGPGY + P + S S G S VP TH+GEDV VF+
Sbjct: 384 DRKAYTVLLYGNGPGYVLKDGARPDVTESES--GSPEYRQQSAVPLDEETHAGEDVAVFA 441
Query: 64 SGPLASVLLTGTMDQSYIPHAIAYIACIGEY 94
GP A L+ G +Q++I H +A+ AC+ Y
Sbjct: 442 RGPQAH-LVHGVQEQTFIAHVMAFAACLEPY 471
>pdb|1EW2|A Chain A, Crystal Structure Of A Human Phosphatase
Length = 513
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 9 DGLPYSTLLYSNGPGY-----SHPRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFS 63
D Y+ LLY NGPGY + P + S S G S VP TH+GEDV VF+
Sbjct: 384 DRKAYTVLLYGNGPGYVLKDGARPDVTESES--GSPEYRQQSAVPLDEETHAGEDVAVFA 441
Query: 64 SGPLASVLLTGTMDQSYIPHAIAYIACIGEY 94
GP A L+ G +Q++I H +A+ AC+ Y
Sbjct: 442 RGPQAH-LVHGVQEQTFIAHVMAFAACLEPY 471
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 18/83 (21%)
Query: 9 DGLPYSTLLYS-NGPGYSHPRLVP---SNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSS 64
DGLP + + + GPG++HP LV +N+ G + +G G+ SS
Sbjct: 246 DGLPLAHVAIAVEGPGWAHPDLVALQVANAIIGHYDRTYGGGL--------------HSS 291
Query: 65 GPLASVLLTGTMDQSYIPHAIAY 87
PLAS+ +T + QS+ +I Y
Sbjct: 292 SPLASIAVTNKLCQSFQTFSICY 314
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 18/83 (21%)
Query: 9 DGLPYSTL-LYSNGPGYSHP---RLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSS 64
DGLP + + + GPG++HP L +N+ G + +G G S
Sbjct: 246 DGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGA--------------HLS 291
Query: 65 GPLASVLLTGTMDQSYIPHAIAY 87
PLAS+ T + QS+ I Y
Sbjct: 292 SPLASIAATNKLCQSFQTFNICY 314
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 18/83 (21%)
Query: 9 DGLPYSTL-LYSNGPGYSHP---RLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSS 64
DGLP + + + GPG++HP L +N+ G + +G G S
Sbjct: 246 DGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGA--------------HLS 291
Query: 65 GPLASVLLTGTMDQSYIPHAIAY 87
PLAS+ T + QS+ I Y
Sbjct: 292 SPLASIAATNKLCQSFQTFNICY 314
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 18/83 (21%)
Query: 9 DGLPYSTL-LYSNGPGYSHP---RLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSS 64
DGLP + + + GPG++HP L +N+ G + +G G S
Sbjct: 280 DGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGA--------------HLS 325
Query: 65 GPLASVLLTGTMDQSYIPHAIAY 87
PLAS+ T + QS+ I Y
Sbjct: 326 SPLASIAATNKLCQSFQTFNICY 348
>pdb|3A52|A Chain A, Crystal Structure Of Cold-Active Alkailne Phosphatase From
Psychrophile Shewanella Sp.
pdb|3A52|B Chain B, Crystal Structure Of Cold-Active Alkailne Phosphatase From
Psychrophile Shewanella Sp
Length = 400
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 51 WAT--HSGEDVPVFSSGPLASVLLTGTMDQSYI 81
W T H+G DV VF+ GP A L G D ++I
Sbjct: 357 WTTSGHTGVDVQVFAMGPAAD-LFKGNQDNTHI 388
>pdb|1OJ7|A Chain A, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|B Chain B, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|C Chain C, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|D Chain D, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
Length = 408
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 40 NSVHGSGVPRHWATH 54
N + G+GVP+ WATH
Sbjct: 274 NGLIGAGVPQDWATH 288
>pdb|2X98|A Chain A, H.Salinarum Alkaline Phosphatase
pdb|2X98|B Chain B, H.Salinarum Alkaline Phosphatase
Length = 431
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 54 HSGEDVPVFSSGPLAS 69
H+G DVPVF+ GP A+
Sbjct: 392 HTGTDVPVFAHGPNAA 407
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 3 SKVSDIDGLPYSTLLYSNGP---GYSHPRLVPSNSSAGDKNSVHGS 45
SKV DIDG Y + S GP G+++ R+V + + ++ + G+
Sbjct: 45 SKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGA 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,581,264
Number of Sequences: 62578
Number of extensions: 144874
Number of successful extensions: 211
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 15
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)