Query psy17925
Match_columns 120
No_of_seqs 120 out of 450
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 17:38:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4126|consensus 100.0 7.2E-33 1.6E-37 241.4 6.0 98 4-102 419-523 (529)
2 smart00098 alkPPc Alkaline pho 99.9 1.8E-23 3.9E-28 178.7 4.0 84 7-92 331-419 (419)
3 PRK10518 alkaline phosphatase; 99.8 3.2E-19 6.9E-24 155.0 5.6 59 6-92 418-476 (476)
4 cd00016 alkPPc Alkaline phosph 99.6 2E-16 4.4E-21 133.3 4.8 57 5-91 328-384 (384)
5 PF00245 Alk_phosphatase: Alka 99.5 3.3E-16 7.2E-21 133.6 -4.9 83 8-91 336-421 (421)
6 COG1785 PhoA Alkaline phosphat 98.8 6.1E-09 1.3E-13 91.5 3.9 49 44-93 433-481 (482)
7 COG1214 Inactive homolog of me 43.6 17 0.00037 28.7 1.9 31 58-91 60-90 (220)
8 PF12577 PPARgamma_N: PPAR gam 40.4 15 0.00032 26.1 1.0 25 1-25 23-49 (83)
9 TIGR03725 bact_YeaZ universal 27.0 32 0.0007 26.3 1.0 31 58-91 56-86 (202)
10 PF05670 DUF814: Domain of unk 20.8 38 0.00082 22.9 0.3 37 56-93 29-66 (90)
No 1
>KOG4126|consensus
Probab=99.97 E-value=7.2e-33 Score=241.44 Aligned_cols=98 Identities=47% Similarity=0.784 Sum_probs=89.1
Q ss_pred CCCCCCCCccceeeeecCCCCC-------CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCcceeecCCCCCCCceeec
Q psy17925 4 KVSDIDGLPYSTLLYSNGPGYS-------HPRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSSGPLASVLLTGTM 76 (120)
Q Consensus 4 ~~~~~Dg~PYTTLsYaNGPG~~-------~~r~~~~~~~t~~~~y~q~a~VPl~~etHgGeDV~v~A~GP~ah~lF~G~~ 76 (120)
...+.|++||++|+|||||||. ..|.+++.....+++|++||.||+++|+||||||+|||+||||| ||+|||
T Consensus 419 ~~~~~d~~py~~L~YanGp~~~~~y~~~~g~R~~~~~~~~~~~~~~~~a~ip~~~~~HggeDV~VfA~Gp~ah-lf~Gv~ 497 (529)
T KOG4126|consen 419 AQHRIDGLPYTTLLYANGPGYNSGYLDEDGQRIDLTAIESKSDDYSFPSAVPLDSETHGGEDVAVFASGPQAH-LFTGVM 497 (529)
T ss_pred ccccccCCceeEEEeccCCccccccccccCCcCCchhhccCCcceeccccccccCCCcCcceeeEEecccHHh-hccchh
Confidence 3467799999999999999875 24778888877799999999999999999999999999999996 999999
Q ss_pred ccchHHHHHHHHhccCccccccCCCC
Q psy17925 77 DQSYIPHAIAYIACIGEYRERCNGTR 102 (120)
Q Consensus 77 Eq~~I~hvm~~A~cig~~~~~C~~~~ 102 (120)
||++|||+|+||+|||++...|....
T Consensus 498 EQs~Iph~MayA~clg~~~~~~~~~~ 523 (529)
T KOG4126|consen 498 EQSTIPHVMAYAACLGPGYTACDLAD 523 (529)
T ss_pred hhhhHHHHHHHHHhcCCccchhcccc
Confidence 99999999999999999999998653
No 2
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=99.88 E-value=1.8e-23 Score=178.66 Aligned_cols=84 Identities=43% Similarity=0.760 Sum_probs=76.8
Q ss_pred CCCCCccceeeeecCCCCCC-----CCCCCCCCCCCCCCCccccCCCCCCCCCCCCCcceeecCCCCCCCceeecccchH
Q psy17925 7 DIDGLPYSTLLYSNGPGYSH-----PRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYI 81 (120)
Q Consensus 7 ~~Dg~PYTTLsYaNGPG~~~-----~r~~~~~~~t~~~~y~q~a~VPl~~etHgGeDV~v~A~GP~ah~lF~G~~Eq~~I 81 (120)
+.|+.||+ |+|+||||+.. .|.++++.++.+.+|.|++.+|+..++|+|+||+|||.||||| ||+|++|||+|
T Consensus 331 ~~~~~~~~-l~~~~~~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~HtG~DV~v~A~GP~a~-~f~G~~ent~i 408 (419)
T smart00098 331 DADRKPYT-LAYKNGPGYVVKDSNGIRPNVTKAEIGSPEYRAQTAVPLDSETHTGEDVAVFAYGPHAH-LFRGVQEQTYI 408 (419)
T ss_pred cCCCCHHH-HHHhcCCCcchhhhccccCCCCHHHhhccccccccccccccccccCcceEEEecCCccc-cCcccccchhH
Confidence 56899999 99999999752 4666777788889999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHhccC
Q psy17925 82 PHAIAYIACIG 92 (120)
Q Consensus 82 ~hvm~~A~cig 92 (120)
+|+|++|+|||
T Consensus 409 ~~~m~~a~~~~ 419 (419)
T smart00098 409 AHVMAYALCLG 419 (419)
T ss_pred HHHHHHHhcCC
Confidence 99999999995
No 3
>PRK10518 alkaline phosphatase; Provisional
Probab=99.77 E-value=3.2e-19 Score=154.99 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=54.4
Q ss_pred CCCCCCccceeeeecCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCcceeecCCCCCCCceeecccchHHHHH
Q psy17925 6 SDIDGLPYSTLLYSNGPGYSHPRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYIPHAI 85 (120)
Q Consensus 6 ~~~Dg~PYTTLsYaNGPG~~~~r~~~~~~~t~~~~y~q~a~VPl~~etHgGeDV~v~A~GP~ah~lF~G~~Eq~~I~hvm 85 (120)
.+.||+|| +|+|+|||| ++|+|+|+||+|||.||||| ||+|++|||+|||+|
T Consensus 418 ~~~dg~~~-~l~y~~g~g--------------------------~s~~HtG~dV~v~A~GP~A~-~f~G~~eqt~if~~m 469 (476)
T PRK10518 418 NTKDGAVM-VVSYGNSEE--------------------------DSQEHTGTQLRIAAYGPHAA-NVVGLTDQTDLFYTM 469 (476)
T ss_pred ccCCCCee-EEEeccCCC--------------------------CCcCcCCceeEEEecCCccc-ccccceeccHHHHHH
Confidence 34599997 899999997 77999999999999999995 999999999999999
Q ss_pred HHHhccC
Q psy17925 86 AYIACIG 92 (120)
Q Consensus 86 ~~A~cig 92 (120)
.+|+|+.
T Consensus 470 ~~Al~~~ 476 (476)
T PRK10518 470 KDALGLK 476 (476)
T ss_pred HHHhCCC
Confidence 9999973
No 4
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=99.63 E-value=2e-16 Score=133.33 Aligned_cols=57 Identities=49% Similarity=0.856 Sum_probs=52.4
Q ss_pred CCCCCCCccceeeeecCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCcceeecCCCCCCCceeecccchHHHH
Q psy17925 5 VSDIDGLPYSTLLYSNGPGYSHPRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYIPHA 84 (120)
Q Consensus 5 ~~~~Dg~PYTTLsYaNGPG~~~~r~~~~~~~t~~~~y~q~a~VPl~~etHgGeDV~v~A~GP~ah~lF~G~~Eq~~I~hv 84 (120)
..+.|++||++|+|+| ++++|+|+||+|||.||||+ +|+|++||++|+|+
T Consensus 328 ~~~~~~~~~~~~~y~~-----------------------------~~~~Htg~~Vpv~a~Gp~a~-~f~g~~ent~I~~~ 377 (384)
T cd00016 328 ELDVDGLPYTTLTYAN-----------------------------TTGTHGGEDVPVFAYGPGSH-LFRGVMENTEIAHV 377 (384)
T ss_pred ccccCCCCceEEEecC-----------------------------CCCCCcCceeeEEeecCCcc-ccCcceecHHHHHH
Confidence 4456888999999988 78999999999999999995 99999999999999
Q ss_pred HHHHhcc
Q psy17925 85 IAYIACI 91 (120)
Q Consensus 85 m~~A~ci 91 (120)
|.+|+||
T Consensus 378 i~~al~~ 384 (384)
T cd00016 378 MAYALGL 384 (384)
T ss_pred HHHHhcC
Confidence 9999996
No 5
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=99.51 E-value=3.3e-16 Score=133.61 Aligned_cols=83 Identities=37% Similarity=0.544 Sum_probs=63.8
Q ss_pred CCCCccceeeeecCCCCCCCC---CCCCCCCCCCCCCccccCCCCCCCCCCCCCcceeecCCCCCCCceeecccchHHHH
Q psy17925 8 IDGLPYSTLLYSNGPGYSHPR---LVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYIPHA 84 (120)
Q Consensus 8 ~Dg~PYTTLsYaNGPG~~~~r---~~~~~~~t~~~~y~q~a~VPl~~etHgGeDV~v~A~GP~ah~lF~G~~Eq~~I~hv 84 (120)
.+++||+++.|+||||+.... ......+.....+.+.+.|++.++.|+|+||+|||.||+|+ +|+|++||++|+|+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~vgwtt~~HTg~dV~v~A~Gp~a~-~f~G~~dNT~I~~~ 414 (421)
T PF00245_consen 336 SDGLPYTILSYANGPGYNVEDGTRPDVNLSDAIGPILSQRAGVGWTTGGHTGEDVPVYAYGPGAE-LFRGVYDNTDIAKK 414 (421)
T ss_dssp TTCCCCHHCEESSCCHHHHHCCCHHHHHHHHHHHHHHHHHHTCB-SSSSEE-S-EEEEEESTTGG-GGSSEEETTHHHHH
T ss_pred hhhhhhhhhhhccchhhhhhcccccccchhhhhccceecccccCCcCCCCCCcceeEEEECCCcc-cCCCceehHHHHHH
Confidence 589999999999999864321 11111122234466789999999999999999999999995 99999999999999
Q ss_pred HHHHhcc
Q psy17925 85 IAYIACI 91 (120)
Q Consensus 85 m~~A~ci 91 (120)
|++|+||
T Consensus 415 m~~algl 421 (421)
T PF00245_consen 415 MAEALGL 421 (421)
T ss_dssp HHHHHT-
T ss_pred HHHHhCc
Confidence 9999997
No 6
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=98.75 E-value=6.1e-09 Score=91.47 Aligned_cols=49 Identities=35% Similarity=0.418 Sum_probs=46.1
Q ss_pred ccCCCCCCCCCCCCCcceeecCCCCCCCceeecccchHHHHHHHHhccCc
Q psy17925 44 GSGVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYIPHAIAYIACIGE 93 (120)
Q Consensus 44 ~a~VPl~~etHgGeDV~v~A~GP~ah~lF~G~~Eq~~I~hvm~~A~cig~ 93 (120)
.+.+.+.++.|+|+||+|||.||+| +-|+|++||+.||++|+.|+.+..
T Consensus 433 ~~~~g~tt~~HtG~dVpi~A~Gpga-e~f~G~~DnTei~~~i~~al~~~~ 481 (482)
T COG1785 433 RALIGWTTHGHTGEDVPIFAYGPGA-ENFRGVMDNTEIFQAIAAALGLSL 481 (482)
T ss_pred ecccCCCCCCccCceeeeeeecCcc-ccccccccchHHHHHHHHHhccCc
Confidence 6888999999999999999999999 599999999999999999998764
No 7
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=43.56 E-value=17 Score=28.72 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=24.7
Q ss_pred CcceeecCCCCCCCceeecccchHHHHHHHHhcc
Q psy17925 58 DVPVFSSGPLASVLLTGTMDQSYIPHAIAYIACI 91 (120)
Q Consensus 58 DV~v~A~GP~ah~lF~G~~Eq~~I~hvm~~A~ci 91 (120)
|-.+++.||+| |||+-=.--+++-+++++.+
T Consensus 60 d~iav~~GPGS---FTGlRIG~~~AkgLA~~l~i 90 (220)
T COG1214 60 DAIAVAKGPGS---FTGLRIGVAFAKGLALALNI 90 (220)
T ss_pred CEEEEccCCCc---ccchhhHHHHHHHHHHHcCC
Confidence 56889999998 89988777777777776664
No 8
>PF12577 PPARgamma_N: PPAR gamma N-terminal region; InterPro: IPR022590 This domain is found in eukaryotes, and is typically between 42 and 65 amino acids in length. It is found N-terminal to PF00104 from PFAM and PF00105 from PFAM. There are two completely conserved residues (D and Y) that may be functionally important. Peroxisome proliferator-activated receptors (PPAR) are nuclear hormone receptors that control the expression of genes involved in lipid homeostasis in mammals[].
Probab=40.38 E-value=15 Score=26.06 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCccceeeeec--CCCCC
Q psy17925 1 MDSKVSDIDGLPYSTLLYSN--GPGYS 25 (120)
Q Consensus 1 ~~~~~~~~Dg~PYTTLsYaN--GPG~~ 25 (120)
||......|.||+|||-|+. ++.|.
T Consensus 23 ldd~shs~DmK~~sTlDysSIsS~~Yd 49 (83)
T PF12577_consen 23 LDDHSHSFDMKPFSTLDYSSISSMHYD 49 (83)
T ss_pred hcccccccccccceeeccccccccccC
Confidence 45666678999999999995 55565
No 9
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=27.03 E-value=32 Score=26.27 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=23.3
Q ss_pred CcceeecCCCCCCCceeecccchHHHHHHHHhcc
Q psy17925 58 DVPVFSSGPLASVLLTGTMDQSYIPHAIAYIACI 91 (120)
Q Consensus 58 DV~v~A~GP~ah~lF~G~~Eq~~I~hvm~~A~ci 91 (120)
|..++..||+| |+|+-=.--++..++++..+
T Consensus 56 ~~iav~~GPGS---fTGlRig~~~akgla~~~~~ 86 (202)
T TIGR03725 56 DAIAVGVGPGS---FTGLRIGLATAKGLALALGI 86 (202)
T ss_pred CEEEEecCCCh---HHhHHHHHHHHHHHHHHhCC
Confidence 56889999987 89977666677777766653
No 10
>PF05670 DUF814: Domain of unknown function (DUF814); InterPro: IPR008532 This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from O34693 from SWISSPROT where the N-terminal region is involved in this activity []. Hence the activity of this C-terminal domain is unknown. This domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.
Probab=20.78 E-value=38 Score=22.95 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=21.6
Q ss_pred CCCcceeecC-CCCCCCceeecccchHHHHHHHHhccCc
Q psy17925 56 GEDVPVFSSG-PLASVLLTGTMDQSYIPHAIAYIACIGE 93 (120)
Q Consensus 56 GeDV~v~A~G-P~ah~lF~G~~Eq~~I~hvm~~A~cig~ 93 (120)
.+|+-+.|.+ |++|-+.++........ +|..|+.|-.
T Consensus 29 ~~D~wfH~~~~pg~hvil~~~~~~~~~~-~l~~AA~laa 66 (90)
T PF05670_consen 29 PNDLWFHADDFPGPHVILRNNPGDEPPP-TLQEAAQLAA 66 (90)
T ss_pred hcceeEeccCCCCCEEEEECCCCccchH-HHHHHHHHHH
Confidence 4677777777 88864444433333322 6666666544
Done!