Query psy17925
Match_columns 120
No_of_seqs 120 out of 450
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:39:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k7h_A Alkaline phosphatase; h 99.9 5E-24 1.7E-28 183.0 4.9 92 7-99 381-476 (476)
2 1zed_A Alkaline phosphatase; p 99.9 1.1E-23 3.8E-28 181.1 5.7 96 6-102 381-479 (484)
3 3tg0_A Apase, alkaline phospha 99.7 1.4E-18 4.9E-23 148.7 4.8 57 7-91 392-448 (449)
4 2x98_A Alkaline phosphatase; h 99.6 2.3E-16 7.7E-21 133.7 1.8 51 41-92 379-429 (431)
5 3a52_A Cold-active alkaline ph 99.2 4.5E-12 1.5E-16 106.4 1.8 46 46-92 354-399 (400)
6 2w0y_A APH, alkaline phosphata 98.7 3.8E-09 1.3E-13 91.1 2.6 49 43-92 424-472 (473)
7 3e2d_A Alkaline phosphatase; c 97.8 2.6E-06 9E-11 73.9 -0.2 43 46-89 457-501 (502)
8 2w5v_A Alkaline phosphatase; p 94.8 0.021 7.1E-07 45.7 3.6 45 47-92 330-374 (375)
9 2a6a_A Hypothetical protein TM 26.7 17 0.00058 27.5 0.6 32 57-91 67-98 (218)
10 3r6m_A YEAZ, resuscitation pro 22.8 21 0.00072 27.1 0.4 32 57-91 57-88 (213)
No 1
>1k7h_A Alkaline phosphatase; hydrolase, transferase, phosphomonoester, extended beta SHEE triad, metal triad; HET: NAG; 1.92A {Pandalus borealis} SCOP: c.76.1.1 PDB: 1shq_A* 1shn_A*
Probab=99.89 E-value=5e-24 Score=182.97 Aligned_cols=92 Identities=43% Similarity=0.810 Sum_probs=82.5
Q ss_pred CCCCCccceeeeecCCCCCC----CCCCCCCCCCCCCCCccccCCCCCCCCCCCCCcceeecCCCCCCCceeecccchHH
Q psy17925 7 DIDGLPYSTLLYSNGPGYSH----PRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYIP 82 (120)
Q Consensus 7 ~~Dg~PYTTLsYaNGPG~~~----~r~~~~~~~t~~~~y~q~a~VPl~~etHgGeDV~v~A~GP~ah~lF~G~~Eq~~I~ 82 (120)
+.|++||++|+|+|||+|.. .|.+++..++.+++|+|++.||+.+++|+||||+|||.||++| +|.|++||++|+
T Consensus 381 ~~d~~~~~~l~y~ngp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~s~~HTgedVpv~A~GPga~-~f~G~~entdI~ 459 (476)
T 1k7h_A 381 DLDDRRYTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSATHDGTDVGIWVNGPFAH-LFTGVYEENYIP 459 (476)
T ss_dssp TTTCCEEESEEESSBTTCCBCTTSSBCCCCHHHHHCTTCCCCBSSBCSSCCEECSCEEEEEESTTGG-GCSSEEETTHHH
T ss_pred ccCCccceehccccCCCccccccccccCchhhhhcccccccccccCCCCCCcCCceEeeEEECCCcc-cCCCcccHHHHH
Confidence 46899999999999999852 2555555556678899999999999999999999999999995 999999999999
Q ss_pred HHHHHHhccCccccccC
Q psy17925 83 HAIAYIACIGEYRERCN 99 (120)
Q Consensus 83 hvm~~A~cig~~~~~C~ 99 (120)
|+|++|+||+++..+|+
T Consensus 460 ~~ia~a~gl~~~~~~~~ 476 (476)
T 1k7h_A 460 HALAYAACVGTGRTFCD 476 (476)
T ss_dssp HHHHHHHTCSSSCCSCC
T ss_pred HHHHHHhCCCCccccCC
Confidence 99999999999999995
No 2
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET: NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB: 1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A*
Probab=99.88 E-value=1.1e-23 Score=181.09 Aligned_cols=96 Identities=38% Similarity=0.628 Sum_probs=85.3
Q ss_pred CCCCCCccceeeeecCCCCCC---CCCCCCCCCCCCCCCccccCCCCCCCCCCCCCcceeecCCCCCCCceeecccchHH
Q psy17925 6 SDIDGLPYSTLLYSNGPGYSH---PRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYIP 82 (120)
Q Consensus 6 ~~~Dg~PYTTLsYaNGPG~~~---~r~~~~~~~t~~~~y~q~a~VPl~~etHgGeDV~v~A~GP~ah~lF~G~~Eq~~I~ 82 (120)
.+.|++||++|+|+|||||.. .|.+++..+..+++|.|++.||+.+++|+||||+|||.||++| +|.|++||++|+
T Consensus 381 ~~~d~~~~~~l~y~~~pg~~~~~~~~~~l~~~~~~~~~~~~~a~v~~~s~~HTgedVpv~A~GPga~-~f~G~~dntdI~ 459 (484)
T 1zed_A 381 KARDRKAYTVLLYGNGPGYVLKDGARPDVTESESGSPEYRQQSAVPLDEETHAGEDVAVFARGPQAH-LVHGVQEQTFIA 459 (484)
T ss_dssp CCTTSSCCBSEEEEESTTCCCBTTBCCCCCHHHHTSTTCCCCEEECCSSCCEECSCEEEEEESTTGG-GCCSEEETTHHH
T ss_pred cccccCceeehhhccCCCccccccccccchhhhhcCccccceeecCCCCCCcCCceeeEEEECCCcc-ccCCcccHHHHH
Confidence 456999999999999999863 3455555556778899999999999999999999999999995 999999999999
Q ss_pred HHHHHHhccCccccccCCCC
Q psy17925 83 HAIAYIACIGEYRERCNGTR 102 (120)
Q Consensus 83 hvm~~A~cig~~~~~C~~~~ 102 (120)
|+|++|+||++..++|...+
T Consensus 460 ~~ia~algl~~~~~~c~~~~ 479 (484)
T 1zed_A 460 HVMAFAACLEPYTACDLAPP 479 (484)
T ss_dssp HHHHHHTTCGGGSSCCCBCC
T ss_pred HHHHHHhCCCCCcccccCCc
Confidence 99999999999999998543
No 3
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli} SCOP: c.76.1.1 PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B 1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A* 1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Probab=99.73 E-value=1.4e-18 Score=148.71 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=51.9
Q ss_pred CCCCCccceeeeecCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCcceeecCCCCCCCceeecccchHHHHHH
Q psy17925 7 DIDGLPYSTLLYSNGPGYSHPRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYIPHAIA 86 (120)
Q Consensus 7 ~~Dg~PYTTLsYaNGPG~~~~r~~~~~~~t~~~~y~q~a~VPl~~etHgGeDV~v~A~GP~ah~lF~G~~Eq~~I~hvm~ 86 (120)
+.||+|| +|+|+||| +.+|+|+|+||+|||.||||| ||+|++|||+|||+|+
T Consensus 392 ~~dg~~~-~l~y~~g~--------------------------~~se~HtG~dV~v~A~GP~A~-~f~G~~eqt~i~~~m~ 443 (449)
T 3tg0_A 392 TKDGAVM-VMSYGNSE--------------------------EDSQEHTGSQLRIAAYGPHAA-NVVGLTDQTDLFYTMK 443 (449)
T ss_dssp CTTSSEE-EEEECSCS--------------------------SSSCCCBCCCEEEEEESTTGG-GGSEEEEHHHHHHHHH
T ss_pred cCCCCee-eeecccCC--------------------------CCCCCcCCceeeEEeecCChh-hcCcceeccHHHHHHH
Confidence 4588876 69999993 489999999999999999995 9999999999999999
Q ss_pred HHhcc
Q psy17925 87 YIACI 91 (120)
Q Consensus 87 ~A~ci 91 (120)
+|+.|
T Consensus 444 ~al~l 448 (449)
T 3tg0_A 444 AALGL 448 (449)
T ss_dssp HHTTC
T ss_pred HHhCC
Confidence 99976
No 4
>2x98_A Alkaline phosphatase; hydrolase; 1.70A {Halobacterium salinarum}
Probab=99.58 E-value=2.3e-16 Score=133.74 Aligned_cols=51 Identities=27% Similarity=0.448 Sum_probs=48.5
Q ss_pred CccccCCCCCCCCCCCCCcceeecCCCCCCCceeecccchHHHHHHHHhccC
Q psy17925 41 SVHGSGVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYIPHAIAYIACIG 92 (120)
Q Consensus 41 y~q~a~VPl~~etHgGeDV~v~A~GP~ah~lF~G~~Eq~~I~hvm~~A~cig 92 (120)
|.|++.|||.+++|+|+||+|||.||||| ||+|++|||+|||+|++|++|.
T Consensus 379 ~~~~a~v~~~s~~Htg~dV~v~A~GP~a~-~f~G~~ent~I~~~m~~alGld 429 (431)
T 2x98_A 379 LAERAGIAFTTDGHTGTDVPVFAHGPNAA-RFDAARDNTAVADALAAALGVS 429 (431)
T ss_dssp HHHHHTCBCCCSSEECCCEEEEEESTTGG-GGSSEEETTHHHHHHHHHHTCC
T ss_pred hhhcccCCCCCCCccccchHhheECCCcc-cCCCccchHHHHHHHHHHhCCC
Confidence 56889999999999999999999999995 9999999999999999999885
No 5
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Probab=99.18 E-value=4.5e-12 Score=106.36 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCCcceeecCCCCCCCceeecccchHHHHHHHHhccC
Q psy17925 46 GVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYIPHAIAYIACIG 92 (120)
Q Consensus 46 ~VPl~~etHgGeDV~v~A~GP~ah~lF~G~~Eq~~I~hvm~~A~cig 92 (120)
.+++.+++|+||||+|||.||++| +|+|++||++|+|+|+.++.+.
T Consensus 354 ~~~w~s~~HTgedVpv~A~Gp~a~-~f~G~~entdI~~~ia~~lg~~ 399 (400)
T 3a52_A 354 YTGWTTSGHTGVDVQVFAMGPAAD-LFKGNQDNTHIAEKMMSLLPKV 399 (400)
T ss_dssp TEECSCSSEECCCEEEEEESTTGG-GGCEEEEHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCcCCCeeEEEEECCCcc-cCCCceeHHHHHHHHHHHhCCC
Confidence 468999999999999999999995 9999999999999999998763
No 6
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A {Halobacterium salinarum R1} PDB: 2x98_A
Probab=98.71 E-value=3.8e-09 Score=91.10 Aligned_cols=49 Identities=29% Similarity=0.473 Sum_probs=45.6
Q ss_pred cccCCCCCCCCCCCCCcceeecCCCCCCCceeecccchHHHHHHHHhccC
Q psy17925 43 HGSGVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYIPHAIAYIACIG 92 (120)
Q Consensus 43 q~a~VPl~~etHgGeDV~v~A~GP~ah~lF~G~~Eq~~I~hvm~~A~cig 92 (120)
+.+.|.|.+..|+|+||+|||.||++ ++|.|.+||+.|++.|+.++.+.
T Consensus 424 ~ra~igWtT~gHTg~dV~vyA~Gpga-~~f~G~~dNTdI~~~i~~~lg~~ 472 (473)
T 2w0y_A 424 ERAGIAFTTDGHTGTDVPVFAHGPNA-ARFDAARDNTAVADALAAALGVS 472 (473)
T ss_dssp HHHTCBCCCSSEECCCEEEEEESTTG-GGGSSEEETTHHHHHHHHHHTCC
T ss_pred cccCCCCCCCCCcCCceeeEEEcCCh-hhcCCceehHHHHHHHHHHHCCC
Confidence 56789999999999999999999999 59999999999999999998763
No 7
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer, psychrophilic bacteria, crystallography, hydrolase; 1.40A {Vibrio SP}
Probab=97.80 E-value=2.6e-06 Score=73.91 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCCCcceeecCCCCCC--CceeecccchHHHHHHHHh
Q psy17925 46 GVPRHWATHSGEDVPVFSSGPLASV--LLTGTMDQSYIPHAIAYIA 89 (120)
Q Consensus 46 ~VPl~~etHgGeDV~v~A~GP~ah~--lF~G~~Eq~~I~hvm~~A~ 89 (120)
.|-|.+..|.|++|+|||.||++ + .|+|.++++.|++.|+.|+
T Consensus 457 ~igWtt~~HT~~~V~v~A~Gpg~-~~~~f~g~~dNTdi~~~i~~~~ 501 (502)
T 3e2d_A 457 NIVWGTGTHTHTPVNVFAWGPAE-KILPVSKIMHHSELGEYIKQQV 501 (502)
T ss_dssp TEECCCSSEECCCEEEEEESCHH-HHGGGSSEEEHHHHHHHHHHTC
T ss_pred CcccCCCCCCCCCeeEEEEcCCc-ccccCcCcccchHHHHHHHHHh
Confidence 66789999999999999999999 8 9999999999999999875
No 8
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase; HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A* 2w5x_A* 2iuc_A 2iuc_B
Probab=94.79 E-value=0.021 Score=45.70 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=40.1
Q ss_pred CCCCCCCCCCCCcceeecCCCCCCCceeecccchHHHHHHHHhccC
Q psy17925 47 VPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYIPHAIAYIACIG 92 (120)
Q Consensus 47 VPl~~etHgGeDV~v~A~GP~ah~lF~G~~Eq~~I~hvm~~A~cig 92 (120)
+|+....|+|..|+++++||+. ..+.|.+++..|+..|..++++.
T Consensus 330 ~~~~~~~e~g~rVP~iv~~Pg~-~~~~~~v~~~Di~pTll~~agi~ 374 (375)
T 2w5v_A 330 PTFSTGGHSATLIPVFAYGPGS-EEFIGIYENNEIFHKILKVTKWN 374 (375)
T ss_dssp CBCSCSSEECCCEEEEEESTTG-GGGCEEEETTHHHHHHHHHHCCC
T ss_pred cCcCCCCCCCcEeEEEEECCCc-cccCCceehhHHHHHHHHHhCCC
Confidence 4456678999999999999999 49999999999999999998874
No 9
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=26.65 E-value=17 Score=27.49 Aligned_cols=32 Identities=25% Similarity=0.049 Sum_probs=23.0
Q ss_pred CCcceeecCCCCCCCceeecccchHHHHHHHHhcc
Q psy17925 57 EDVPVFSSGPLASVLLTGTMDQSYIPHAIAYIACI 91 (120)
Q Consensus 57 eDV~v~A~GP~ah~lF~G~~Eq~~I~hvm~~A~ci 91 (120)
=|.+.++.||++ |+|+.=.--++..+++++.+
T Consensus 67 ld~Iav~~GPGs---fTGlRiG~~~Ak~La~~~~i 98 (218)
T 2a6a_A 67 LDVVGVGIGPGG---LTGLRVGIATVVGLVSPYDI 98 (218)
T ss_dssp CSEEEEECCSSC---HHHHHHHHHHHHHHHGGGTC
T ss_pred CCEEEEEcCCCc---hHhHHHHHHHHHHHHHHcCC
Confidence 377889999975 89976666666666666553
No 10
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=22.83 E-value=21 Score=27.05 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=25.3
Q ss_pred CCcceeecCCCCCCCceeecccchHHHHHHHHhcc
Q psy17925 57 EDVPVFSSGPLASVLLTGTMDQSYIPHAIAYIACI 91 (120)
Q Consensus 57 eDV~v~A~GP~ah~lF~G~~Eq~~I~hvm~~A~ci 91 (120)
=|...++.||++ |+|+.=.--+++.++++..+
T Consensus 57 ld~Iav~~GPGs---fTglRig~~~AkgLa~~~~i 88 (213)
T 3r6m_A 57 LDALAFGRGPGS---FTGVRIGIGIAQGLAFGAEL 88 (213)
T ss_dssp CSEEEEEEESSC---HHHHHHHHHHHHHHHHHTTC
T ss_pred ccEEEEecCCCc---hhhHHHHHHHHHHHHHHhCC
Confidence 478889999976 79988777777777777654
Done!