RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17925
         (120 letters)



>gnl|CDD|201110 pfam00245, Alk_phosphatase, Alkaline phosphatase. 
          Length = 421

 Score = 63.6 bits (155), Expect = 4e-13
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 9   DGLPYSTLLYSNGPGYS---HPRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSSG 65
           DG+ +  +LY NGPGY      R   + + + +      S VP    TH+GEDVPVF+ G
Sbjct: 337 DGMAFKLILYGNGPGYKVEDGARPNVTAAESINNIYRTRSAVPLTSETHTGEDVPVFAYG 396

Query: 66  PLASVLLTGTMDQSYIPHAIAYIACI 91
           P A  L+ G  +Q+YI H +A   C+
Sbjct: 397 PQAH-LVHGVQEQTYIAHVMAAALCL 421


>gnl|CDD|237983 cd00016, alkPPc, Alkaline phosphatase homologues; alkaline
           phosphatases are non-specific phosphomonoesterases that
           catalyze the hydrolysis reaction via a phosphoseryl
           intermediate to produce inorganic phosphate and the
           corresponding alcohol, optimally at high pH. Alkaline
           phosphatase exists as a dimer, each monomer binding 2
           zinc atoms and one magnesium atom, which are essential
           for enzymatic activity.
          Length = 384

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 30/90 (33%)

Query: 2   DSKVSDIDGLPYSTLLYSNGPGYSHPRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPV 61
           D+   D+DGLPY+TL Y+N                                TH GEDVPV
Sbjct: 325 DAPELDVDGLPYTTLTYANT-----------------------------TGTHGGEDVPV 355

Query: 62  FSSGPLASVLLTGTMDQSYIPHAIAYIACI 91
           F+ GP  S L  G M+ + I H +AY   +
Sbjct: 356 FAYGP-GSHLFRGVMENTEIAHVMAYALGL 384


>gnl|CDD|214515 smart00098, alkPPc, Alkaline phosphatase homologues. 
          Length = 419

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 6   SDIDGLPYSTLLYSNGPGY--SHPRLVPSNSSAGDKNSV---HGSGVPRHWATHSGEDVP 60
            D D  PY TL Y NGPGY       +  N +  +  S      + VP    TH+GEDV 
Sbjct: 330 LDADRKPY-TLAYKNGPGYVVKDSNGIRPNVTKAEIGSPEYRAQTAVPLDSETHTGEDVA 388

Query: 61  VFSSGPLASVLLTGTMDQSYIPHAIAYIACIG 92
           VF+ GP A  L  G  +Q+YI H +AY  C+G
Sbjct: 389 VFAYGPHAH-LFRGVQEQTYIAHVMAYALCLG 419


>gnl|CDD|224699 COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and
           metabolism].
          Length = 482

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 53  THSGEDVPVFSSGPLASVLLTGTMDQSYIPHAIA 86
            H+GEDVP+F+ GP A     G MD + I  AIA
Sbjct: 442 GHTGEDVPIFAYGPGAEN-FRGVMDNTEIFQAIA 474


>gnl|CDD|185092 PRK15138, PRK15138, aldehyde reductase; Provisional.
          Length = 387

 Score = 27.1 bits (60), Expect = 2.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 40  NSVHGSGVPRHWATH 54
           N + G+GVP+ WATH
Sbjct: 253 NGLIGAGVPQDWATH 267


>gnl|CDD|237913 PRK15119, PRK15119, undecaprenyl-phosphate
          alpha-N-acetylglucosaminyl 1-phosphate transferase;
          Provisional.
          Length = 365

 Score = 26.2 bits (58), Expect = 4.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 68 ASVLLTGTMDQSYIPHAIAYIACIG 92
          A +  T  +   YIPHA  Y+AC G
Sbjct: 57 AGICFTFGITDYYIPHASLYLACAG 81


>gnl|CDD|235356 PRK05170, PRK05170, hypothetical protein; Provisional.
          Length = 147

 Score = 25.3 bits (56), Expect = 7.0
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 11/56 (19%)

Query: 4   KVSDIDGLPYS---TLLYSNGPGYS-HPRLVPSNSSAGDKNSVHGSGVP-RHWATH 54
            + + + LP +    LL       S HP L+      G K +VH +G+  R     
Sbjct: 80  NLPEFEWLPPTCAYRLLAEGKDLPSWHP-LI-----TGSKEAVHKAGISVRGRVVS 129


>gnl|CDD|182159 PRK09946, PRK09946, hypothetical protein; Provisional.
          Length = 270

 Score = 25.1 bits (55), Expect = 9.7
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 34  SSAGDKNSVHGSGVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQ 78
           +S GD   +   G     A +SG++V + +SG  ++V+ TG +D 
Sbjct: 179 ASNGDLVQIASFGANARIA-NSGDNVHIIASGENSTVVSTGVVDS 222


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.312    0.128    0.387 

Gapped
Lambda     K      H
   0.267   0.0670    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,709,126
Number of extensions: 463716
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 11
Length of query: 120
Length of database: 10,937,602
Length adjustment: 83
Effective length of query: 37
Effective length of database: 7,256,220
Effective search space: 268480140
Effective search space used: 268480140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)