RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17925
(120 letters)
>1k7h_A Alkaline phosphatase; hydrolase, transferase, phosphomonoester,
extended beta SHEE triad, metal triad; HET: NAG; 1.92A
{Pandalus borealis} SCOP: c.76.1.1 PDB: 1shq_A* 1shn_A*
Length = 476
Score = 103 bits (258), Expect = 2e-27
Identities = 41/101 (40%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 3 SKVSDIDGLPYSTLLYSNGPGYS----HPRLVPSNSSAGDKNSVHGSGVPRHWATHSGED 58
+ +SD+D Y+ L Y +GPGY R P+ D N + S P+H ATH G D
Sbjct: 377 AGISDLDDRRYTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSATHDGTD 436
Query: 59 VPVFSSGPLASVLLTGTMDQSYIPHAIAYIACIGEYRERCN 99
V ++ +GP A L TG +++YIPHA+AY AC+G R C+
Sbjct: 437 VGIWVNGPFAH-LFTGVYEENYIPHALAYAACVGTGRTFCD 476
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET:
NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB:
1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A*
Length = 484
Score = 88.3 bits (219), Expect = 6e-22
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 3 SKVSDIDGLPYSTLLYSNGPGYSH---PRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDV 59
+ D Y+ LLY NGPGY R + S +G S VP TH+GEDV
Sbjct: 378 APGKARDRKAYTVLLYGNGPGYVLKDGARPDVTESESGSPEYRQQSAVPLDEETHAGEDV 437
Query: 60 PVFSSGPLASVLLTGTMDQSYIPHAIAYIACIGEYRERCNGTRTHNTST 108
VF+ GP A L+ G +Q++I H +A+ AC+ Y C+ +T
Sbjct: 438 AVFARGPQAH-LVHGVQEQTFIAHVMAFAACLEPYTA-CDL-APPAGTT 483
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A
{Halobacterium salinarum R1} PDB: 2x98_A
Length = 473
Score = 54.0 bits (130), Expect = 6e-10
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 45 SGVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYIPHAIAYIACI 91
+G+ H+G DVPVF+ GP A+ D + + A+A +
Sbjct: 426 AGIAFTTDGHTGTDVPVFAHGPNAA-RFDAARDNTAVADALAAALGV 471
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli}
PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B
1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A*
1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Length = 449
Score = 52.9 bits (127), Expect = 2e-09
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 14 STLLYSNGPGYSHPRLVPS-NSSAGDKNSVHGSGVPRHWATHSGEDVPVFSSGPLASVLL 72
+ P P L + N+ G + H+G + + + GP A+ +
Sbjct: 371 AHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAA-NV 429
Query: 73 TGTMDQSYIPHAIAYIACI 91
G DQ+ + + + +
Sbjct: 430 VGLTDQTDLFYTMKAALGL 448
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Length = 400
Score = 50.4 bits (121), Expect = 1e-08
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 36 AGDKNSVHGSGVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYIPHAIAYI 88
A K S + H+G DV VF+ GP A L G D ++I + +
Sbjct: 344 ALKKIIDTRSYTGWTTSGHTGVDVQVFAMGPAAD-LFKGNQDNTHIAEKMMSL 395
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase;
HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A*
2w5x_A* 2iuc_A 2iuc_B
Length = 375
Score = 46.5 bits (111), Expect = 2e-07
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 23 GYSHPRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSSGPLASVLLTGTMDQSYIP 82
G++ + + G HS +PVF+ GP + G + + I
Sbjct: 306 GFTLAAKKNKREDGSEYSDYTEIGPTFSTGGHSATLIPVFAYGPGSE-EFIGIYENNEIF 364
Query: 83 HAIAYIACIGE 93
H I + +
Sbjct: 365 HKILKVTKWNQ 375
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 4e-06
Identities = 22/121 (18%), Positives = 33/121 (27%), Gaps = 26/121 (21%)
Query: 17 LYSNGPGY-------SHPRLVPSNSSAGDKNSVHGSGVP-RHWATHSGE--DVPVFSSGP 66
LY S L + D V G+ W + D S P
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 67 LASVLLTGTMDQ--SYIPHAIAYIACI------GEYRERCNGTRTHNTSTTTAFNISKAT 118
++ L+ Q Y + GE R G H+ TA I++
Sbjct: 236 ISCPLIGVI--QLAHY------VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 119 T 119
+
Sbjct: 288 S 288
Score = 25.4 bits (55), Expect = 7.7
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 14/32 (43%)
Query: 64 SGPLASVLLTG------------TMDQSYIPH 83
SGP S L G +DQS IP
Sbjct: 380 SGPPQS--LYGLNLTLRKAKAPSGLDQSRIPF 409
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 37.9 bits (88), Expect = 3e-04
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 43 HGSGVPRHWATHSGEDVPVFSSGPLASVL-LTGTMDQSYIPHAIA 86
G + TH+ V VF+ GP +L ++ M S + I
Sbjct: 454 TGQNIVWGTGTHTHTPVNVFAWGPAEKILPVSKIMHHSELGEYIK 498
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure
initiative II, NYSGXRC, (alpha/alpha)6 barrel domain;
2.33A {Bacteroides thetaiotaomicron vpi-5482}
Length = 739
Score = 25.0 bits (54), Expect = 9.0
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 69 SVLLTGTMDQSYIPHAIAYIACIGEYRERCNGTR 102
S++L G + + A +I G+Y
Sbjct: 2 SLILLGALSLASSTFAQTWIWYPGDYEIWLGNQM 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.387
Gapped
Lambda K H
0.267 0.0826 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,722,178
Number of extensions: 88454
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 15
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.2 bits)