RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17925
         (120 letters)



>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
           (Pandalus borealis) [TaxId: 6703]}
          Length = 476

 Score = 98.7 bits (245), Expect = 5e-26
 Identities = 41/101 (40%), Positives = 58/101 (57%), Gaps = 5/101 (4%)

Query: 3   SKVSDIDGLPYSTLLYSNGPGYS----HPRLVPSNSSAGDKNSVHGSGVPRHWATHSGED 58
           + +SD+D   Y+ L Y +GPGY       R  P+     D N  + S  P+H ATH G D
Sbjct: 377 AGISDLDDRRYTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSATHDGTD 436

Query: 59  VPVFSSGPLASVLLTGTMDQSYIPHAIAYIACIGEYRERCN 99
           V ++ +GP A  L TG  +++YIPHA+AY AC+G  R  C+
Sbjct: 437 VGIWVNGPFAH-LFTGVYEENYIPHALAYAACVGTGRTFCD 476


>d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 479

 Score = 87.9 bits (217), Expect = 3e-22
 Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 9   DGLPYSTLLYSNGPGYSH---PRLVPSNSSAGDKNSVHGSGVPRHWATHSGEDVPVFSSG 65
           D   Y+ LLY NGPGY      R   + S +G       S VP    TH+GEDV VF+ G
Sbjct: 384 DRKAYTVLLYGNGPGYVLKDGARPDVTESESGSPEYRQQSAVPLDEETHAGEDVAVFARG 443

Query: 66  PLASVLLTGTMDQSYIPHAIAYIACIGEYRERCNGT 101
           P A  L+ G  +Q++I H +A+ AC+  Y   C+  
Sbjct: 444 PQAH-LVHGVQEQTFIAHVMAFAACLEPYTA-CDLA 477


>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
           [TaxId: 562]}
          Length = 449

 Score = 56.3 bits (135), Expect = 5e-11
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 13  YSTLLYSNGPGYSHPRLVPS-NSSAGDKNSVHGSGVPRHWATHSGEDVPVFSSGPLASVL 71
           ++       P    P L  + N+  G    +           H+G  + + + GP A+  
Sbjct: 370 HAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAA-N 428

Query: 72  LTGTMDQSYIPHAIAYIACI 91
           + G  DQ+ + + +     +
Sbjct: 429 VVGLTDQTDLFYTMKAALGL 448


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.128    0.387 

Gapped
Lambda     K      H
   0.267   0.0443    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 417,451
Number of extensions: 16302
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 5
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.6 bits)