BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17926
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SHN|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHN|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHQ|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
pdb|1SHQ|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
Length = 478
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 20 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKS---CKDLARQLVEDYPGK 76
G++TG+VT+TRVTHATPA Y H R WE+D V V R+ C D+A QLV PGK
Sbjct: 136 GRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDV-VHDREDPEICDDIAEQLVFREPGK 194
Query: 77 DI 78
+
Sbjct: 195 NF 196
>pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase
pdb|1K7H|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase
Length = 476
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 20 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKS---CKDLARQLVEDYPGK 76
G++TG+VT+TRVTHATPA Y H R WE+D V V R+ C D+A QLV PGK
Sbjct: 136 GRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDV-VHDREDPEICDDIAEQLVFREPGK 194
Query: 77 DI 78
+
Sbjct: 195 NF 196
>pdb|1ZED|A Chain A, Alkaline Phosphatase From Human Placenta In Complex With
P- Nitrophenyl-Phosphonate
Length = 484
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 20 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRK-SCKDLARQLVED 72
GK+ G+VT TRV HA+PA Y H+ +R W D VP +R+ C+D+A QL+ +
Sbjct: 140 GKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQDIATQLISN 193
>pdb|3MK0|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK1|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK2|A Chain A, Placental Alkaline Phosphatase Complexed With Phe
pdb|2GLQ|A Chain A, X-Ray Structure Of Human Alkaline Phosphatase In Complex
With Strontium
pdb|1ZEF|A Chain A, Structure Of Alkaline Phosphatase From Human Placenta In
Complex With Its Uncompetitive Inhibitor L-Phe
pdb|1ZEB|A Chain A, X-ray Structure Of Alkaline Phosphatase From Human
Placenta In Complex With 5'-amp
Length = 484
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 20 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRK-SCKDLARQLVED 72
GK+ G+VT TRV HA+PA Y H+ +R W D VP +R+ C+D+A QL+ +
Sbjct: 140 GKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQDIATQLISN 193
>pdb|1EW2|A Chain A, Crystal Structure Of A Human Phosphatase
Length = 513
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 20 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRK-SCKDLARQLVED 72
GK+ G+VT TRV HA+PA Y H+ +R W D VP +R+ C+D+A QL+ +
Sbjct: 140 GKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQDIATQLISN 193
>pdb|3E2D|A Chain A, The 1.4 A Crystal Structure Of The Large And Cold-Active
Vibrio Sp. Alkaline Phosphatase
pdb|3E2D|B Chain B, The 1.4 A Crystal Structure Of The Large And Cold-Active
Vibrio Sp. Alkaline Phosphatase
Length = 502
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 8/46 (17%)
Query: 5 LEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWED 50
LEK ++ GKATG+V++TR+THATPA+F H P R E+
Sbjct: 96 LEKAKKA--------GKATGLVSDTRLTHATPASFAAHQPHRSLEN 133
>pdb|2X98|A Chain A, H.Salinarum Alkaline Phosphatase
pdb|2X98|B Chain B, H.Salinarum Alkaline Phosphatase
Length = 431
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 15/66 (22%)
Query: 9 RRVQTYV--AYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLA 66
+RV T + A G ATG++T T THATPAAF H V R + ++A
Sbjct: 101 QRVDTVLERASAQGYATGLITTTEATHATPAAFAAH-------------VEDRGNQTEIA 147
Query: 67 RQLVED 72
RQ +E+
Sbjct: 148 RQYIEE 153
>pdb|2IUC|B Chain B, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 38.9 bits (89), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 23 TGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVEDYPGKDINSFD 82
TG+V + +THATPA+FY H+ +R E++ + D+ ++ + G +N F
Sbjct: 125 TGVVATSSITHATPASFYAHALNRGLEEEIAM---------DMTESDLDFFAGGGLNYFT 175
Query: 83 EFYPGKDINA 92
KD+ A
Sbjct: 176 SRSDSKDVLA 185
>pdb|2IUC|A Chain A, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 23 TGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVEDYPGKDINSFD 82
TG+V + +THATPA+FY H+ +R E++ + D+ ++ + G +N F
Sbjct: 125 TGVVATSSITHATPASFYAHALNRGLEEEIAM---------DMTESDLDFFAGGGLNYFT 175
Query: 83 EFYPGKDINA 92
KD+ A
Sbjct: 176 SRKDKKDVLA 185
>pdb|2W5X|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Glu
With Mg Bound In The M3 Site.
pdb|2W5X|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Glu
With Mg Bound In The M3 Site
Length = 375
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 23 TGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVEDYPGKDINSFD 82
TG+V + +T ATPA+FY H+ +R E++ + D+ ++ + G +N F
Sbjct: 125 TGVVATSSITEATPASFYAHALNRGLEEEIAM---------DMTESDLDFFAGGGLNYFT 175
Query: 83 EFYPGKDINA 92
+ KD+ A
Sbjct: 176 KRKDKKDVLA 185
>pdb|3A52|A Chain A, Crystal Structure Of Cold-Active Alkailne Phosphatase From
Psychrophile Shewanella Sp.
pdb|3A52|B Chain B, Crystal Structure Of Cold-Active Alkailne Phosphatase From
Psychrophile Shewanella Sp
Length = 400
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G +TG+ +V HATPAAF H+ SR
Sbjct: 91 MAKARGMSTGVAVTAQVNHATPAAFLTHNESR 122
>pdb|2W5V|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Mg Bound In The M3 Site.
pdb|2W5V|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Mg Bound In The M3 Site.
pdb|2W5W|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Zn Bound In The M3 Site.
pdb|2W5W|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Zn Bound In The M3 Site
Length = 375
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 23 TGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVEDYPGKDINSFD 82
TG+V + +T ATPA+FY H+ +R E++ + D+ ++ + G +N F
Sbjct: 125 TGVVATSSITDATPASFYAHALNRGLEEEIAM---------DMTESDLDFFAGGGLNYFT 175
Query: 83 EFYPGKDINA 92
+ KD+ A
Sbjct: 176 KRKDKKDVLA 185
>pdb|1KHJ|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Mimic Of
The Transition States With Aluminium Fluoride
pdb|1KHJ|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Mimic Of
The Transition States With Aluminium Fluoride
pdb|1KHK|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n)
pdb|1KHK|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n)
pdb|1KHL|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Complex
With Phosphate
pdb|1KHL|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Complex
With Phosphate
pdb|1KHN|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Zinc Form
pdb|1KHN|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Zinc Form
Length = 449
Score = 31.2 bits (69), Expect = 0.13, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + HATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQHATPAALVAHVTSR 166
>pdb|2ANH|A Chain A, Alkaline Phosphatase (D153h)
pdb|2ANH|B Chain B, Alkaline Phosphatase (D153h)
Length = 446
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + HATPAA H SR
Sbjct: 132 MAKAAGLATGNVSTAELQHATPAALVAHVTSR 163
>pdb|1Y7A|A Chain A, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN
Presence Of Cobalt At 1.77 A Resolution
pdb|1Y7A|B Chain B, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN
Presence Of Cobalt At 1.77 A Resolution
Length = 449
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + HATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQHATPAALVAHVTSR 166
>pdb|1ANI|A Chain A, Alkaline Phosphatase (D153h, K328h)
pdb|1ANI|B Chain B, Alkaline Phosphatase (D153h, K328h)
Length = 446
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + HATPAA H SR
Sbjct: 132 MAKAAGLATGNVSTAELQHATPAALVAHVTSR 163
>pdb|1KH4|A Chain A, E. Coli Alkaline Phosphatase Mutant (D330n) In Complex
With Phosphate
pdb|1KH4|B Chain B, E. Coli Alkaline Phosphatase Mutant (D330n) In Complex
With Phosphate
pdb|1KH5|A Chain A, E. Coli Alkaline Phosphatase Mutant (D330n) Mimic Of The
Transition States With Aluminium Fluoride
pdb|1KH5|B Chain B, E. Coli Alkaline Phosphatase Mutant (D330n) Mimic Of The
Transition States With Aluminium Fluoride
pdb|1KH9|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153gd330n) Complex
With Phosphate
pdb|1KH9|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153gd330n) Complex
With Phosphate
Length = 449
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1ALK|A Chain A, Reaction Mechanism Of Alkaline Phosphatase Based On
Crystal Structures. Two Metal Ion Catalysis
pdb|1ALK|B Chain B, Reaction Mechanism Of Alkaline Phosphatase Based On
Crystal Structures. Two Metal Ion Catalysis
Length = 449
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|3BDH|A Chain A, Crystal Structure Of Zinc-Deficient Wild-Type E. Coli
Alkaline Phosphatase
pdb|3BDH|B Chain B, Crystal Structure Of Zinc-Deficient Wild-Type E. Coli
Alkaline Phosphatase
Length = 458
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 136 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 167
>pdb|3DPC|A Chain A, Structure Of E.Coli Alkaline Phosphatase Mutant In Complex
With A Phosphorylated Peptide
pdb|3DPC|B Chain B, Structure Of E.Coli Alkaline Phosphatase Mutant In Complex
With A Phosphorylated Peptide
Length = 455
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1ELY|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102c)
pdb|1ELY|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102c)
Length = 449
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1HJK|A Chain A, Alkaline Phosphatase Mutant H331q
pdb|1HJK|B Chain B, Alkaline Phosphatase Mutant H331q
Length = 449
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1ELX|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102a)
pdb|1ELX|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102a)
Length = 449
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1ALH|A Chain A, Kinetics And Crystal Structure Of A Mutant E. Coli
Alkaline Phosphatase (Asp-369-->asn): A Mechanism
Involving One Zinc Per Active Site
pdb|1ALH|B Chain B, Kinetics And Crystal Structure Of A Mutant E. Coli
Alkaline Phosphatase (Asp-369-->asn): A Mechanism
Involving One Zinc Per Active Site
Length = 446
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 132 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 163
>pdb|1URB|A Chain A, Alkaline Phosphatase (N51mg)
pdb|1URB|B Chain B, Alkaline Phosphatase (N51mg)
pdb|1URA|A Chain A, Alkaline Phosphatase (D51zn)
pdb|1URA|B Chain B, Alkaline Phosphatase (D51zn)
Length = 446
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 132 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 163
>pdb|1HQA|A Chain A, Alkaline Phosphatase (H412q)
pdb|1HQA|B Chain B, Alkaline Phosphatase (H412q)
Length = 449
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1B8J|A Chain A, Alkaline Phosphatase Complexed With Vanadate
pdb|1B8J|B Chain B, Alkaline Phosphatase Complexed With Vanadate
pdb|2GA3|A Chain A, Structure Of S102t E. Coli Alkaline Phosphatase-Phosphate
Intermediate At 2.20a Resolution
pdb|2GA3|B Chain B, Structure Of S102t E. Coli Alkaline Phosphatase-Phosphate
Intermediate At 2.20a Resolution
Length = 449
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|3BDG|B Chain B, Crystal Structure Of Wild-TypeT155V MIXED DIMER OF E. COLI
ALKALINE Phosphatase
Length = 458
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 136 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 167
>pdb|1ALJ|A Chain A, Alkaline Phosphatase Mutant (H412n)
pdb|1ALJ|B Chain B, Alkaline Phosphatase Mutant (H412n)
pdb|1ALI|A Chain A, Alkaline Phosphatase Mutant (H412n)
pdb|1ALI|B Chain B, Alkaline Phosphatase Mutant (H412n)
Length = 449
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1ED8|A Chain A, Structure Of E. Coli Alkaline Phosphatase Inhibited By The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED8|B Chain B, Structure Of E. Coli Alkaline Phosphatase Inhibited By The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED9|A Chain A, Structure Of E. Coli Alkaline Phosphatase Without The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED9|B Chain B, Structure Of E. Coli Alkaline Phosphatase Without The
Inorganic Phosphate At 1.75a Resolution
pdb|1EW8|A Chain A, Alkaline Phosphatase (e.c. 3.1.3.1) Complex With
Phosphonoacetic Acid
pdb|1EW8|B Chain B, Alkaline Phosphatase (e.c. 3.1.3.1) Complex With
Phosphonoacetic Acid
pdb|1EW9|A Chain A, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Mercaptomethyl Phosphonate
pdb|1EW9|B Chain B, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Mercaptomethyl Phosphonate
pdb|1Y6V|A Chain A, Structure Of E. Coli Alkaline Phosphatase In Presence Of
Cobalt At 1.60 A Resolution
pdb|1Y6V|B Chain B, Structure Of E. Coli Alkaline Phosphatase In Presence Of
Cobalt At 1.60 A Resolution
pdb|3TG0|A Chain A, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|B Chain B, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|C Chain C, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|D Chain D, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
Length = 449
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1ELZ|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102g)
pdb|1ELZ|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102g)
Length = 449
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1ANJ|A Chain A, Alkaline Phosphatase (K328h)
pdb|1ANJ|B Chain B, Alkaline Phosphatase (K328h)
Length = 446
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 132 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 163
>pdb|2G9Y|A Chain A, Structure Of S102t E. Coli Alkaline Phosphatase In
Presence Of Phosphate At 2.00 A Resolution
pdb|2G9Y|B Chain B, Structure Of S102t E. Coli Alkaline Phosphatase In
Presence Of Phosphate At 2.00 A Resolution
Length = 449
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|3DYC|A Chain A, Structure Of E322y Alkaline Phosphatase In Complex With
Inorganic Phosphate
pdb|3DYC|B Chain B, Structure Of E322y Alkaline Phosphatase In Complex With
Inorganic Phosphate
Length = 449
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1AJD|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJD|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJC|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJC|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJB|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJB|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJA|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJA|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
Length = 449
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQGATPAALVAHVTSR 166
>pdb|1KH7|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153gd330n)
pdb|1KH7|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153gd330n)
Length = 449
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQGATPAALVAHVTSR 166
>pdb|2XID|A Chain A, Pilus-Presented Adhesin, Spy0125 (Cpa), P212121 Form (Dls)
pdb|2XID|B Chain B, Pilus-Presented Adhesin, Spy0125 (Cpa), P212121 Form (Dls)
Length = 457
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 35 TPAAFYGHSPSRYWEDDGKV-PVISRKSCKDLARQLVEDYPGKDINSFDEF 84
+PA + P + + GKV +I K ++ +++VE Y + N F+EF
Sbjct: 84 SPAGYSIAEPITFKVEAGKVYTIIDGKQIENPNKEIVEPYSVEAYNDFEEF 134
>pdb|2XI9|A Chain A, Pilus-Presented Adhesin, Spy0125 (Cpa), P1 Form
pdb|2XI9|B Chain B, Pilus-Presented Adhesin, Spy0125 (Cpa), P1 Form
pdb|2XIC|A Chain A, Pilus-Presented Adhesin, Spy0125 (Cpa), P212121 Form (Esrf
Data)
pdb|2XIC|B Chain B, Pilus-Presented Adhesin, Spy0125 (Cpa), P212121 Form (Esrf
Data)
Length = 457
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 35 TPAAFYGHSPSRYWEDDGKV-PVISRKSCKDLARQLVEDYPGKDINSFDEF 84
+PA + P + + GKV +I K ++ +++VE Y + N F+EF
Sbjct: 84 SPAGYSIAEPITFKVEAGKVYTIIDGKQIENPNKEIVEPYSVEAYNDFEEF 134
>pdb|3P3A|A Chain A, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
pdb|3P3A|B Chain B, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
Length = 320
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 19 TGKATGIVTNTRVTHATPAAFYGHSPSRYWEDD-----GKVPVISRKSCKDLA--RQLVE 71
TG+ T + TR T P +P R ++DD GK P+I +S ++ R +
Sbjct: 154 TGRDTTLEVPTRQTSGYPVVERNDAPIRAFKDDVLRVLGKEPLIDVRSPQEYTGERTHMP 213
Query: 72 DYP 74
DYP
Sbjct: 214 DYP 216
>pdb|3BDF|A Chain A, Crystal Structure Of Metal-Free E. Coli Alkaline
Phosphatase (T155v)
pdb|3BDF|B Chain B, Crystal Structure Of Metal-Free E. Coli Alkaline
Phosphatase (T155v)
pdb|3BDG|A Chain A, Crystal Structure Of Wild-TypeT155V MIXED DIMER OF E. COLI
ALKALINE Phosphatase
Length = 458
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 46
+A G ATG V+ + A PAA H SR
Sbjct: 136 MAKAAGLATGNVSTAELQDAVPAALVAHVTSR 167
>pdb|1LHL|A Chain A, Role Of Proline Residues In Human Lysozyme Stability: A
Scanning Calorimetric Study Combined With X-Ray
Structure Analysis Of Proline Mutants
Length = 130
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 28 NTRVTHATP---AAFYG--HSPSRYWEDDGKVP 55
NTR T+ P + YG SRYW +DGK P
Sbjct: 39 NTRATNYNPGDRSTDYGIFQINSRYWCNDGKTP 71
>pdb|3CMR|A Chain A, E. Coli Alkaline Phosphatase Mutant R166s In Complex With
Phosphate
pdb|3CMR|B Chain B, E. Coli Alkaline Phosphatase Mutant R166s In Complex With
Phosphate
Length = 449
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 15 VAYGTGKATGIVTNTRVTHATPAAFYGHSPS 45
+A G ATG V+ + ATPAA H S
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTS 165
>pdb|4HPF|A Chain A, Structure Of The Human Slo3 Gating Ring
pdb|4HPF|B Chain B, Structure Of The Human Slo3 Gating Ring
Length = 722
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 48 WEDDGKVPVISRKSCKDLARQLVEDYPGKDINS 80
WED +V V S ++C +A L D +DI++
Sbjct: 69 WEDLRRVAVESAEACLIIANPLCSDSHAEDISN 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,399,050
Number of Sequences: 62578
Number of extensions: 133282
Number of successful extensions: 547
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 45
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)