Query psy17926
Match_columns 95
No_of_seqs 129 out of 1007
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 17:40:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4126|consensus 100.0 1.3E-31 2.8E-36 220.3 6.8 86 5-91 165-256 (529)
2 smart00098 alkPPc Alkaline pho 99.9 7.2E-28 1.6E-32 194.7 5.8 83 5-92 84-172 (419)
3 PRK10518 alkaline phosphatase; 99.9 1.9E-25 4.1E-30 183.1 6.6 83 2-89 150-243 (476)
4 cd00016 alkPPc Alkaline phosph 99.9 3.3E-25 7.2E-30 176.8 6.7 69 6-88 96-169 (384)
5 PF00245 Alk_phosphatase: Alka 99.9 8.5E-26 1.8E-30 182.2 2.1 87 2-91 80-172 (421)
6 COG1785 PhoA Alkaline phosphat 99.9 2.6E-22 5.7E-27 164.8 5.1 71 4-88 139-217 (482)
7 PRK11587 putative phosphatase; 46.9 16 0.00035 26.1 2.1 23 8-31 88-110 (218)
8 TIGR01509 HAD-SF-IA-v3 haloaci 46.6 19 0.0004 24.2 2.3 25 8-33 90-114 (183)
9 TIGR01149 mtrG N5-methyltetrah 45.9 3 6.5E-05 26.8 -1.6 19 6-24 26-44 (70)
10 PRK06769 hypothetical protein; 45.5 20 0.00042 25.2 2.3 22 8-30 33-54 (173)
11 PRK08942 D,D-heptose 1,7-bisph 42.4 24 0.00052 24.6 2.4 21 9-30 35-55 (181)
12 TIGR01428 HAD_type_II 2-haloal 42.2 24 0.00053 24.5 2.4 23 8-31 97-119 (198)
13 TIGR01664 DNA-3'-Pase DNA 3'-p 42.2 24 0.00051 24.9 2.3 22 8-30 47-68 (166)
14 PRK01026 tetrahydromethanopter 42.2 3.8 8.2E-05 26.8 -1.6 19 6-24 29-47 (77)
15 TIGR00213 GmhB_yaeD D,D-heptos 42.2 24 0.00053 24.5 2.4 22 8-30 31-52 (176)
16 TIGR02253 CTE7 HAD superfamily 40.7 26 0.00055 24.7 2.3 24 8-32 99-122 (221)
17 TIGR01449 PGP_bact 2-phosphogl 39.3 29 0.00063 24.1 2.4 23 8-31 90-112 (213)
18 PF04210 MtrG: Tetrahydrometha 37.5 11 0.00023 24.3 -0.0 19 6-24 26-44 (70)
19 TIGR01681 HAD-SF-IIIC HAD-supe 36.3 29 0.00063 23.2 1.9 20 9-29 35-54 (128)
20 PRK09456 ?-D-glucose-1-phospha 35.9 27 0.00058 24.6 1.8 24 8-32 89-112 (199)
21 TIGR01549 HAD-SF-IA-v1 haloaci 34.9 34 0.00073 22.6 2.1 23 8-31 69-91 (154)
22 TIGR03351 PhnX-like phosphonat 34.3 36 0.00077 24.0 2.2 22 9-31 93-114 (220)
23 PLN02770 haloacid dehalogenase 33.1 38 0.00082 24.9 2.3 22 8-30 113-134 (248)
24 TIGR01656 Histidinol-ppas hist 32.9 42 0.00091 22.6 2.3 21 9-30 33-53 (147)
25 TIGR02247 HAD-1A3-hyp Epoxide 32.4 39 0.00084 23.7 2.2 22 9-31 100-121 (211)
26 TIGR01685 MDP-1 magnesium-depe 32.1 40 0.00086 24.4 2.2 21 8-29 50-70 (174)
27 TIGR02244 HAD-IG-Ncltidse HAD 31.9 38 0.00082 27.3 2.2 25 7-32 188-212 (343)
28 TIGR02252 DREG-2 REG-2-like, H 31.8 43 0.00092 23.3 2.3 21 9-30 111-131 (203)
29 TIGR01662 HAD-SF-IIIA HAD-supe 31.4 49 0.0011 21.5 2.4 21 9-30 31-51 (132)
30 PRK13288 pyrophosphatase PpaX; 30.4 48 0.001 23.4 2.3 23 8-31 87-109 (214)
31 TIGR01454 AHBA_synth_RP 3-amin 29.9 49 0.0011 23.2 2.3 24 8-32 80-103 (205)
32 TIGR01261 hisB_Nterm histidino 29.7 49 0.0011 23.3 2.3 21 8-29 34-54 (161)
33 COG0546 Gph Predicted phosphat 29.6 49 0.0011 23.9 2.3 29 7-36 93-121 (220)
34 PLN03243 haloacid dehalogenase 29.1 46 0.001 25.1 2.2 23 8-31 114-136 (260)
35 PRK10826 2-deoxyglucose-6-phos 28.9 51 0.0011 23.4 2.3 24 8-32 97-120 (222)
36 PRK14988 GMP/IMP nucleotidase; 28.9 51 0.0011 24.0 2.3 22 8-30 98-119 (224)
37 TIGR01422 phosphonatase phosph 28.3 45 0.00097 24.3 2.0 21 9-30 105-125 (253)
38 PLN02811 hydrolase 28.2 52 0.0011 23.5 2.2 23 8-31 83-105 (220)
39 PRK13478 phosphonoacetaldehyde 28.1 47 0.001 24.6 2.0 22 8-30 106-127 (267)
40 PRK06698 bifunctional 5'-methy 28.1 48 0.001 26.9 2.2 26 8-34 335-360 (459)
41 TIGR01990 bPGM beta-phosphoglu 26.9 58 0.0013 22.0 2.2 20 9-29 93-112 (185)
42 PLN02779 haloacid dehalogenase 26.3 56 0.0012 24.9 2.2 23 8-31 149-171 (286)
43 TIGR00338 serB phosphoserine p 26.1 57 0.0012 22.9 2.1 22 8-30 90-111 (219)
44 PRK13226 phosphoglycolate phos 25.8 58 0.0013 23.5 2.1 22 8-30 100-121 (229)
45 TIGR01459 HAD-SF-IIA-hyp4 HAD- 24.7 67 0.0014 23.5 2.3 18 13-30 33-50 (242)
46 cd07397 MPP_DevT Myxococcus xa 24.4 1.1E+02 0.0024 23.4 3.5 49 29-82 150-201 (238)
47 TIGR01491 HAD-SF-IB-PSPlk HAD- 24.2 68 0.0015 21.9 2.2 22 8-30 85-106 (201)
48 PF14502 HTH_41: Helix-turn-he 24.1 30 0.00064 20.6 0.3 22 5-27 3-24 (48)
49 TIGR01548 HAD-SF-IA-hyp1 haloa 23.9 75 0.0016 22.2 2.4 23 9-32 112-134 (197)
50 TIGR02335 hydr_PhnA phosphonoa 23.6 73 0.0016 25.9 2.5 20 7-27 101-120 (408)
51 TIGR01691 enolase-ppase 2,3-di 22.9 71 0.0015 23.8 2.2 22 9-31 101-122 (220)
52 PF13419 HAD_2: Haloacid dehal 22.9 79 0.0017 20.4 2.2 21 9-30 83-103 (176)
53 TIGR03172 probable selenium-de 22.5 65 0.0014 24.5 1.9 23 13-35 18-40 (232)
54 TIGR02009 PGMB-YQAB-SF beta-ph 22.3 80 0.0017 21.3 2.2 20 9-29 94-113 (185)
55 TIGR01668 YqeG_hyp_ppase HAD s 22.2 75 0.0016 22.2 2.1 18 13-30 52-69 (170)
56 PLN02954 phosphoserine phospha 22.2 73 0.0016 22.5 2.0 25 7-32 88-112 (224)
57 PRK09552 mtnX 2-hydroxy-3-keto 22.1 73 0.0016 22.8 2.1 27 8-35 79-105 (219)
58 PRK13225 phosphoglycolate phos 21.6 78 0.0017 24.1 2.2 22 8-30 147-168 (273)
59 TIGR01670 YrbI-phosphatas 3-de 20.8 1E+02 0.0022 21.1 2.5 22 13-34 37-58 (154)
60 cd07372 2A5CPDO_B The beta sub 20.6 1.4E+02 0.003 23.3 3.5 31 13-43 173-207 (294)
No 1
>KOG4126|consensus
Probab=99.97 E-value=1.3e-31 Score=220.27 Aligned_cols=86 Identities=41% Similarity=0.623 Sum_probs=81.6
Q ss_pred ccccccHHHHHHHHcCCcEeEEeeccCCCCCcccceeccCCCCCccCCCCccccc-cChHHHHHHHhhcCCCCCccEEE-
Q psy17926 5 LEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISR-KSCKDLARQLVEDYPGKDINSFD- 82 (95)
Q Consensus 5 ~~~~~ti~le~Ak~~Gk~tGiVTT~~vthATPAa~yAH~~~R~we~d~~~~~~~~-~~~~dIA~Qlv~~~~g~~~dVil- 82 (95)
++.|.|| ++|||++||+||||||+||||||||++|||+++|+||||++||.+.+ .+|.|||+||+++++|+++||||
T Consensus 165 ~~~v~SI-l~wAq~AGk~tG~VTTTRvThAsPag~yAH~anR~wE~D~~v~~~~~~~~c~DiA~QLi~~~~G~~l~Vi~G 243 (529)
T KOG4126|consen 165 GNHVISI-LEWAQLAGKSTGLVTTTRVTHASPAGAYAHVANRNWECDAEVPASAGGEGCQDIARQLIEQPVGKNLDVILG 243 (529)
T ss_pred cccchHH-HHHHHHhCcccceEEEeeeccCCchhhhhccccccccccccccccccccchHHHHHHHhccCCCCceEEEec
Confidence 5678899 99999999999999999999999999999999999999999999665 58999999999999999999999
Q ss_pred ----ecccCCCCC
Q psy17926 83 ----EFYPGKDIN 91 (95)
Q Consensus 83 ----~F~p~~~~d 91 (95)
+|+|+...|
T Consensus 244 GGr~~f~~~~~~d 256 (529)
T KOG4126|consen 244 GGRKYFLPKGTND 256 (529)
T ss_pred CCcccccCCCCCC
Confidence 999998888
No 2
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=99.94 E-value=7.2e-28 Score=194.66 Aligned_cols=83 Identities=41% Similarity=0.627 Sum_probs=76.6
Q ss_pred ccccccHHHHHHHHcCCcEeEEeeccCCCCCcccceeccCCCCCccCCCCccccc-cChHHHHHHHhhcCCCCCccEEE-
Q psy17926 5 LEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISR-KSCKDLARQLVEDYPGKDINSFD- 82 (95)
Q Consensus 5 ~~~~~ti~le~Ak~~Gk~tGiVTT~~vthATPAa~yAH~~~R~we~d~~~~~~~~-~~~~dIA~Qlv~~~~g~~~dVil- 82 (95)
+++++|| +||||++||+||||||++||||||||||||+.+|+||++.+++.... .+|.+||+||++. ++||||
T Consensus 84 ~~~~~tI-le~Ak~~G~~tGiVTT~~ithATPAafyAH~~~R~~e~~~~i~~~~~~~~~~dIa~Ql~~~----~~dVilG 158 (419)
T smart00098 84 GKEVPSV-LEWAKKAGKSTGLVTTTRITHATPAATYAHVASRKWYNDADIPAEALENGCGDIARQLINN----RIDVLLG 158 (419)
T ss_pred CCcchhH-HHHHHHcCCcEEEEeCcccCCCcchhheeecccccccchhhhHHHHhhcCCccHHHHHhhc----CCcEEEe
Confidence 7899999 99999999999999999999999999999999999999999888553 5899999999997 799999
Q ss_pred ----ecccCCCCCc
Q psy17926 83 ----EFYPGKDINA 92 (95)
Q Consensus 83 ----~F~p~~~~d~ 92 (95)
+|+|+.+.|+
T Consensus 159 GG~~~F~p~~~~~~ 172 (419)
T smart00098 159 GGRSYFAPTGTADP 172 (419)
T ss_pred CCcccccccCCCcc
Confidence 8999887654
No 3
>PRK10518 alkaline phosphatase; Provisional
Probab=99.92 E-value=1.9e-25 Score=183.09 Aligned_cols=83 Identities=22% Similarity=0.218 Sum_probs=70.7
Q ss_pred CCCccccccHHHHHHHHcCCcEeEEeeccCCCCCcccceeccCCCCCccCCCCcccc------ccChHHHHHHHhhcCCC
Q psy17926 2 KLDLEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVIS------RKSCKDLARQLVEDYPG 75 (95)
Q Consensus 2 ~~d~~~~~ti~le~Ak~~Gk~tGiVTT~~vthATPAa~yAH~~~R~we~d~~~~~~~------~~~~~dIA~Qlv~~~~g 75 (95)
+.+++++.|| +||||++||+||||||++||||||||||||+.+|+||+|....... .+++.+||+||++.
T Consensus 150 d~~g~~v~TI-lE~Ak~~G~aTGiVTT~~ithATPAafyAH~~~R~~~~~~~~~~~c~~~~~~~gg~~~IA~Ql~~~--- 225 (476)
T PRK10518 150 DIHGKDHPTL-LELAKAAGKATGNVSTAELQDATPAALVAHVTSRKCYGPEETSEKCPGNALENGGRGSITEQLLNT--- 225 (476)
T ss_pred CCCCCcchhH-HHHHHHcCCcEEEEeccccCCCcchhhhhccchhhccCccccccccccccccccchhHHHHHHhcc---
Confidence 4468899999 9999999999999999999999999999999999999876632211 13456999999986
Q ss_pred CCccEEE-----ecccCCC
Q psy17926 76 KDINSFD-----EFYPGKD 89 (95)
Q Consensus 76 ~~~dVil-----~F~p~~~ 89 (95)
++|||| +|+|+..
T Consensus 226 -~~DVilGGG~~~F~~~~~ 243 (476)
T PRK10518 226 -RADVTLGGGAKTFAETAT 243 (476)
T ss_pred -CCeEEEeCChhhccccCC
Confidence 799999 8999654
No 4
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=99.91 E-value=3.3e-25 Score=176.83 Aligned_cols=69 Identities=55% Similarity=0.857 Sum_probs=66.1
Q ss_pred cccccHHHHHHHHcCCcEeEEeeccCCCCCcccceeccCCCCCccCCCCccccccChHHHHHHHhhcCCCCCccEEE---
Q psy17926 6 EKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVEDYPGKDINSFD--- 82 (95)
Q Consensus 6 ~~~~ti~le~Ak~~Gk~tGiVTT~~vthATPAa~yAH~~~R~we~d~~~~~~~~~~~~dIA~Qlv~~~~g~~~dVil--- 82 (95)
+++.|| +|+||++||+||||||++||||||||||||+++|+|| .+||+||+++.+|+++||||
T Consensus 96 ~~~~ti-~e~ak~~G~~tGiVtT~~ithATPAa~~AH~~~R~~~-------------~~Ia~q~~~~~~g~~~dv~~GGG 161 (384)
T cd00016 96 KPVTSV-LEWAKAAGKATGIVTTTRVTHATPAAFYAHVPDRNWE-------------EDIAEQLIEEAPGRGIDVLLGGG 161 (384)
T ss_pred cchhhH-HHHHHHcCCCEEEEeeeecCCCcchhhhccccccCCH-------------HHHHHHHhhccCCCCCeEEEeCC
Confidence 789999 9999999999999999999999999999999999998 89999999998899999999
Q ss_pred --ecccCC
Q psy17926 83 --EFYPGK 88 (95)
Q Consensus 83 --~F~p~~ 88 (95)
+|+|+.
T Consensus 162 ~~~f~~~~ 169 (384)
T cd00016 162 RRYFLPST 169 (384)
T ss_pred hhhccccC
Confidence 899964
No 5
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=99.91 E-value=8.5e-26 Score=182.21 Aligned_cols=87 Identities=40% Similarity=0.621 Sum_probs=66.3
Q ss_pred CCCccccccHHHHHHHHcCCcEeEEeeccCCCCCcccceeccCCCCCccCCCCcccc-ccChHHHHHHHhhcCCCCCccE
Q psy17926 2 KLDLEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVIS-RKSCKDLARQLVEDYPGKDINS 80 (95)
Q Consensus 2 ~~d~~~~~ti~le~Ak~~Gk~tGiVTT~~vthATPAa~yAH~~~R~we~d~~~~~~~-~~~~~dIA~Qlv~~~~g~~~dV 80 (95)
+.|+++++|| +|+||++||+||||||++||||||||||||+.+|+||++-..+... ..+|.||++||++.+ +++||
T Consensus 80 ~~~~~~~~ti-~e~Ak~~G~~tGvVtT~~ithATPAaf~Ah~~~R~~~~~ia~~~~~~~~g~~di~~q~~~~~--~~~Dv 156 (421)
T PF00245_consen 80 DPDGKPLETI-LELAKEAGKATGVVTTTRITHATPAAFYAHVPDRNWYNDIAEPDEQQLAGCPDIAQQLLESG--KNVDV 156 (421)
T ss_dssp ETTSCB---H-HHHHHHTT-EEEEEEEEETTSHHHHTTT--BSSTT-HHHHHHCTCHHCTTS--HHHHHHHCT--GG-SE
T ss_pred CCCCCcchhH-HHHHHHhCCeeeeeecccccCCccceEEEecccccccchhhcchhhhhcCCcchHHHhhcCC--cccce
Confidence 3568999999 9999999999999999999999999999999999999865544433 468999999999984 46999
Q ss_pred EE-----ecccCCCCC
Q psy17926 81 FD-----EFYPGKDIN 91 (95)
Q Consensus 81 il-----~F~p~~~~d 91 (95)
|| +|+|+.+.|
T Consensus 157 ~lGGG~~~f~p~~~~~ 172 (421)
T PF00245_consen 157 ILGGGRRYFLPKGEPD 172 (421)
T ss_dssp EEEE-GGGGSBTTCSC
T ss_pred EecCchhhccccCCCC
Confidence 99 899998765
No 6
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.6e-22 Score=164.77 Aligned_cols=71 Identities=38% Similarity=0.521 Sum_probs=64.7
Q ss_pred CccccccHHHHHHHHcCCcEeEEeeccCCCCCcccceeccCCCCCccCCCCccccccChHHHHHHHhhcC-CCC--CccE
Q psy17926 4 DLEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVEDY-PGK--DINS 80 (95)
Q Consensus 4 d~~~~~ti~le~Ak~~Gk~tGiVTT~~vthATPAa~yAH~~~R~we~d~~~~~~~~~~~~dIA~Qlv~~~-~g~--~~dV 80 (95)
++++++|| ||.||++||+||||||+|||||||||||||+.+|+|| .+||+|++... .|+ ++||
T Consensus 139 ~~~~~~Ti-LE~Ak~~GkaTGlVtTtriThATPAAf~AHv~~R~~~-------------~~ia~~~~~~~~~~~~~~~DV 204 (482)
T COG1785 139 NGKPLKTI-LELAKEAGKATGLVTTTRITHATPAAFAAHVTSRDDE-------------DEIATQQICPGNAGRNDKVDV 204 (482)
T ss_pred CCcccchH-HHHHHHhCcccceEEeeeccccChHHHHHhcccccch-------------hHHHHHhhccccccccCCCCE
Confidence 47899999 9999999999999999999999999999999999976 78999999874 345 5999
Q ss_pred EE-----ecccCC
Q psy17926 81 FD-----EFYPGK 88 (95)
Q Consensus 81 il-----~F~p~~ 88 (95)
+| +|+|+.
T Consensus 205 llGGG~~~F~p~~ 217 (482)
T COG1785 205 LLGGGRKYFLPKA 217 (482)
T ss_pred EecCchhhccccc
Confidence 99 999995
No 7
>PRK11587 putative phosphatase; Provisional
Probab=46.90 E-value=16 Score=26.06 Aligned_cols=23 Identities=22% Similarity=0.059 Sum_probs=18.6
Q ss_pred cccHHHHHHHHcCCcEeEEeeccC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRV 31 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~v 31 (95)
+..+ ++..+++|+.+||||+...
T Consensus 88 ~~e~-L~~L~~~g~~~~ivTn~~~ 110 (218)
T PRK11587 88 AIAL-LNHLNKLGIPWAIVTSGSV 110 (218)
T ss_pred HHHH-HHHHHHcCCcEEEEcCCCc
Confidence 4455 7889999999999998753
No 8
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=46.64 E-value=19 Score=24.24 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=19.7
Q ss_pred cccHHHHHHHHcCCcEeEEeeccCCC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRVTH 33 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~vth 33 (95)
+..+ ++..+++|+.++|||++....
T Consensus 90 ~~~~-l~~l~~~g~~~~i~Tn~~~~~ 114 (183)
T TIGR01509 90 VEPL-LEALRARGKKLALLTNSPRDH 114 (183)
T ss_pred HHHH-HHHHHHCCCeEEEEeCCchHH
Confidence 4445 788889999999999987544
No 9
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=45.87 E-value=3 Score=26.81 Aligned_cols=19 Identities=47% Similarity=0.461 Sum_probs=14.8
Q ss_pred cccccHHHHHHHHcCCcEe
Q psy17926 6 EKVRRVQTYVAYGTGKATG 24 (95)
Q Consensus 6 ~~~~ti~le~Ak~~Gk~tG 24 (95)
++|+.+-.|.+|+.||++|
T Consensus 26 eKVEf~~~E~~Qr~Gkk~G 44 (70)
T TIGR01149 26 EKVEFVNGEVAQRIGKKVG 44 (70)
T ss_pred HHHHHHHHHHHHHHhHHhh
Confidence 4566555899999999887
No 10
>PRK06769 hypothetical protein; Validated
Probab=45.52 E-value=20 Score=25.23 Aligned_cols=22 Identities=9% Similarity=-0.177 Sum_probs=18.2
Q ss_pred cccHHHHHHHHcCCcEeEEeecc
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
+..+ ++..++.|...||||+..
T Consensus 33 v~e~-L~~Lk~~G~~l~I~Tn~~ 54 (173)
T PRK06769 33 TKAS-LQKLKANHIKIFSFTNQP 54 (173)
T ss_pred HHHH-HHHHHHCCCEEEEEECCc
Confidence 4445 788999999999999875
No 11
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=42.44 E-value=24 Score=24.56 Aligned_cols=21 Identities=14% Similarity=-0.005 Sum_probs=17.6
Q ss_pred ccHHHHHHHHcCCcEeEEeecc
Q psy17926 9 RRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 9 ~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
..+ +++.+++|..+||+|+.+
T Consensus 35 ~e~-L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 35 IEA-IARLKQAGYRVVVATNQS 55 (181)
T ss_pred HHH-HHHHHHCCCEEEEEeCCc
Confidence 345 788999999999999875
No 12
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=42.23 E-value=24 Score=24.51 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=18.5
Q ss_pred cccHHHHHHHHcCCcEeEEeeccC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRV 31 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~v 31 (95)
+..+ ++.++++|+.+||+|++..
T Consensus 97 ~~~~-L~~L~~~g~~~~i~Sn~~~ 119 (198)
T TIGR01428 97 VPAG-LRALKERGYRLAILSNGSP 119 (198)
T ss_pred HHHH-HHHHHHCCCeEEEEeCCCH
Confidence 3445 7889999999999998764
No 13
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=42.22 E-value=24 Score=24.89 Aligned_cols=22 Identities=18% Similarity=0.024 Sum_probs=18.0
Q ss_pred cccHHHHHHHHcCCcEeEEeecc
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
+..+ ++..+++|+..||||+.+
T Consensus 47 v~e~-L~~Lk~~G~~l~I~TN~~ 68 (166)
T TIGR01664 47 IPAK-LQELDDEGYKIVIFTNQS 68 (166)
T ss_pred HHHH-HHHHHHCCCEEEEEeCCc
Confidence 3455 888999999999999854
No 14
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=42.19 E-value=3.8 Score=26.80 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=14.6
Q ss_pred cccccHHHHHHHHcCCcEe
Q psy17926 6 EKVRRVQTYVAYGTGKATG 24 (95)
Q Consensus 6 ~~~~ti~le~Ak~~Gk~tG 24 (95)
++|+-.-.|.+|+.||++|
T Consensus 29 eKVEftn~Ei~Qr~GkkvG 47 (77)
T PRK01026 29 EKVEFTNAEIFQRIGKKVG 47 (77)
T ss_pred HHHHHHHHHHHHHHhHHhh
Confidence 4555555899999999887
No 15
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=42.16 E-value=24 Score=24.51 Aligned_cols=22 Identities=27% Similarity=0.084 Sum_probs=18.5
Q ss_pred cccHHHHHHHHcCCcEeEEeecc
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
+..+ +++.+++|+..+|||+..
T Consensus 31 v~e~-L~~Lk~~G~~l~i~TN~~ 52 (176)
T TIGR00213 31 VIDA-LRELKKMGYALVLVTNQS 52 (176)
T ss_pred HHHH-HHHHHHCCCEEEEEeCCc
Confidence 4455 788999999999999886
No 16
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=40.71 E-value=26 Score=24.65 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=19.3
Q ss_pred cccHHHHHHHHcCCcEeEEeeccCC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRVT 32 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~vt 32 (95)
+..+ ++..++.|+.+||||++.-.
T Consensus 99 ~~~~-L~~L~~~g~~~~i~Tn~~~~ 122 (221)
T TIGR02253 99 VRDT-LMELRESGYRLGIITDGLPV 122 (221)
T ss_pred HHHH-HHHHHHCCCEEEEEeCCchH
Confidence 4455 78889999999999998644
No 17
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=39.28 E-value=29 Score=24.15 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=18.4
Q ss_pred cccHHHHHHHHcCCcEeEEeeccC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRV 31 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~v 31 (95)
+..+ +++.+++|..++|||+..-
T Consensus 90 ~~~~-L~~l~~~g~~~~i~S~~~~ 112 (213)
T TIGR01449 90 VEAT-LGALRAKGLRLGLVTNKPT 112 (213)
T ss_pred HHHH-HHHHHHCCCeEEEEeCCCH
Confidence 3445 7889999999999998753
No 18
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=37.54 E-value=11 Score=24.28 Aligned_cols=19 Identities=37% Similarity=0.436 Sum_probs=14.8
Q ss_pred cccccHHHHHHHHcCCcEe
Q psy17926 6 EKVRRVQTYVAYGTGKATG 24 (95)
Q Consensus 6 ~~~~ti~le~Ak~~Gk~tG 24 (95)
++++-+-.|.+|+.||++|
T Consensus 26 eKvEf~~~Ei~Qr~GkkiG 44 (70)
T PF04210_consen 26 EKVEFTNAEIAQRAGKKIG 44 (70)
T ss_pred HHHHhHHHHHHHHHhHHhh
Confidence 4556555899999999887
No 19
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=36.28 E-value=29 Score=23.16 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=17.2
Q ss_pred ccHHHHHHHHcCCcEeEEeec
Q psy17926 9 RRVQTYVAYGTGKATGIVTNT 29 (95)
Q Consensus 9 ~ti~le~Ak~~Gk~tGiVTT~ 29 (95)
..+ +++.+++|...+|+|+.
T Consensus 35 ~e~-L~~Lk~~g~~l~i~Sn~ 54 (128)
T TIGR01681 35 RDK-LQTLKKNGFLLALASYN 54 (128)
T ss_pred HHH-HHHHHHCCeEEEEEeCC
Confidence 344 78899999999999998
No 20
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=35.90 E-value=27 Score=24.58 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=19.1
Q ss_pred cccHHHHHHHHcCCcEeEEeeccCC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRVT 32 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~vt 32 (95)
+..+ ++..+++|+.++|+|++.-.
T Consensus 89 ~~e~-L~~l~~~g~~~~i~Sn~~~~ 112 (199)
T PRK09456 89 VIAI-MHKLREQGHRVVVLSNTNRL 112 (199)
T ss_pred HHHH-HHHHHhCCCcEEEEcCCchh
Confidence 3445 78899999999999998643
No 21
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=34.94 E-value=34 Score=22.64 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=18.6
Q ss_pred cccHHHHHHHHcCCcEeEEeeccC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRV 31 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~v 31 (95)
+..+ ++..+++|..++|||+..-
T Consensus 69 ~~e~-l~~L~~~g~~~~i~T~~~~ 91 (154)
T TIGR01549 69 AADL-LKRLKEAGIKLGIISNGSL 91 (154)
T ss_pred HHHH-HHHHHHCcCeEEEEeCCch
Confidence 4555 7888889999999998873
No 22
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=34.32 E-value=36 Score=24.02 Aligned_cols=22 Identities=9% Similarity=0.012 Sum_probs=17.8
Q ss_pred ccHHHHHHHHcCCcEeEEeeccC
Q psy17926 9 RRVQTYVAYGTGKATGIVTNTRV 31 (95)
Q Consensus 9 ~ti~le~Ak~~Gk~tGiVTT~~v 31 (95)
..+ +++.+++|...||||+..-
T Consensus 93 ~~~-L~~L~~~g~~~~ivT~~~~ 114 (220)
T TIGR03351 93 EEA-FRSLRSSGIKVALTTGFDR 114 (220)
T ss_pred HHH-HHHHHHCCCEEEEEeCCch
Confidence 344 7889999999999997764
No 23
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=33.05 E-value=38 Score=24.93 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=18.5
Q ss_pred cccHHHHHHHHcCCcEeEEeecc
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
+..+ +++.+++|...||||+..
T Consensus 113 v~e~-L~~L~~~g~~l~I~Tn~~ 134 (248)
T PLN02770 113 LYKL-KKWIEDRGLKRAAVTNAP 134 (248)
T ss_pred HHHH-HHHHHHcCCeEEEEeCCC
Confidence 4455 788999999999999986
No 24
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=32.88 E-value=42 Score=22.64 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=17.8
Q ss_pred ccHHHHHHHHcCCcEeEEeecc
Q psy17926 9 RRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 9 ~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
..+ ++..+++|+.++|+|+..
T Consensus 33 ~~~-l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 33 VPA-LLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred HHH-HHHHHHCCCEEEEEeCCC
Confidence 345 789999999999999875
No 25
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=32.43 E-value=39 Score=23.73 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=17.3
Q ss_pred ccHHHHHHHHcCCcEeEEeeccC
Q psy17926 9 RRVQTYVAYGTGKATGIVTNTRV 31 (95)
Q Consensus 9 ~ti~le~Ak~~Gk~tGiVTT~~v 31 (95)
..+ ++..+++|..+||+|+...
T Consensus 100 ~~~-L~~L~~~g~~l~i~Sn~~~ 121 (211)
T TIGR02247 100 MAA-IKTLRAKGFKTACITNNFP 121 (211)
T ss_pred HHH-HHHHHHCCCeEEEEeCCCC
Confidence 344 7788889999999998743
No 26
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=32.13 E-value=40 Score=24.36 Aligned_cols=21 Identities=19% Similarity=0.117 Sum_probs=17.9
Q ss_pred cccHHHHHHHHcCCcEeEEeec
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNT 29 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~ 29 (95)
+..+ ++..+++|+.+||+|+.
T Consensus 50 v~el-L~~Lk~~G~~l~I~Sn~ 70 (174)
T TIGR01685 50 VRDV-LQTLKDAGTYLATASWN 70 (174)
T ss_pred HHHH-HHHHHHCCCEEEEEeCC
Confidence 4456 89999999999999977
No 27
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=31.92 E-value=38 Score=27.31 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=19.8
Q ss_pred ccccHHHHHHHHcCCcEeEEeeccCC
Q psy17926 7 KVRRVQTYVAYGTGKATGIVTNTRVT 32 (95)
Q Consensus 7 ~~~ti~le~Ak~~Gk~tGiVTT~~vt 32 (95)
.+..+ |+..+++|+..+|||++.-.
T Consensus 188 gl~el-L~~Lr~~G~klfLvTNS~~~ 212 (343)
T TIGR02244 188 KLPLF-LSKLKEHGKKLFLLTNSDYD 212 (343)
T ss_pred hHHHH-HHHHHHCCCeEEEEeCCCHH
Confidence 44555 78899999999999987643
No 28
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=31.77 E-value=43 Score=23.30 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=16.9
Q ss_pred ccHHHHHHHHcCCcEeEEeecc
Q psy17926 9 RRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 9 ~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
..+ ++..+++|+.++|||+..
T Consensus 111 ~~~-l~~L~~~g~~~~i~Sn~~ 131 (203)
T TIGR02252 111 IKL-LKDLRERGLILGVISNFD 131 (203)
T ss_pred HHH-HHHHHHCCCEEEEEeCCc
Confidence 344 677888999999999864
No 29
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=31.37 E-value=49 Score=21.51 Aligned_cols=21 Identities=24% Similarity=0.071 Sum_probs=17.8
Q ss_pred ccHHHHHHHHcCCcEeEEeecc
Q psy17926 9 RRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 9 ~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
..+ ++..+++|..++|+|+..
T Consensus 31 ~~~-l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 31 PDA-LAELKEAGYKVVIVTNQS 51 (132)
T ss_pred HHH-HHHHHHCCCEEEEEECCc
Confidence 345 788899999999999987
No 30
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=30.44 E-value=48 Score=23.38 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=18.8
Q ss_pred cccHHHHHHHHcCCcEeEEeeccC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRV 31 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~v 31 (95)
+..+ +++.+++|...||||+..-
T Consensus 87 ~~~~-l~~L~~~g~~~~i~S~~~~ 109 (214)
T PRK13288 87 VYET-LKTLKKQGYKLGIVTTKMR 109 (214)
T ss_pred HHHH-HHHHHHCCCeEEEEeCCCH
Confidence 3455 7889999999999999863
No 31
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=29.88 E-value=49 Score=23.16 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=18.8
Q ss_pred cccHHHHHHHHcCCcEeEEeeccCC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRVT 32 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~vt 32 (95)
+..+ +++.+++|..++|+|+..-.
T Consensus 80 ~~~~-L~~L~~~g~~~~i~Sn~~~~ 103 (205)
T TIGR01454 80 VPEL-LAELRADGVGTAIATGKSGP 103 (205)
T ss_pred HHHH-HHHHHHCCCeEEEEeCCchH
Confidence 3445 78899999999999986533
No 32
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=29.72 E-value=49 Score=23.25 Aligned_cols=21 Identities=24% Similarity=0.069 Sum_probs=17.6
Q ss_pred cccHHHHHHHHcCCcEeEEeec
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNT 29 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~ 29 (95)
+..+ ++..+++|+.++|||+.
T Consensus 34 v~e~-L~~L~~~g~~l~IvSN~ 54 (161)
T TIGR01261 34 VIPA-LLKLKKAGYKFVMVTNQ 54 (161)
T ss_pred HHHH-HHHHHHCCCeEEEEeCC
Confidence 4455 78899999999999996
No 33
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=29.65 E-value=49 Score=23.90 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=21.3
Q ss_pred ccccHHHHHHHHcCCcEeEEeeccCCCCCc
Q psy17926 7 KVRRVQTYVAYGTGKATGIVTNTRVTHATP 36 (95)
Q Consensus 7 ~~~ti~le~Ak~~Gk~tGiVTT~~vthATP 36 (95)
-+..+ |++.+++|...||||+.+-..+.+
T Consensus 93 gv~e~-L~~L~~~g~~l~i~T~k~~~~~~~ 121 (220)
T COG0546 93 GVKEL-LAALKSAGYKLGIVTNKPERELDI 121 (220)
T ss_pred CHHHH-HHHHHhCCCeEEEEeCCcHHHHHH
Confidence 34455 899999999999999865444433
No 34
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=29.14 E-value=46 Score=25.11 Aligned_cols=23 Identities=4% Similarity=-0.036 Sum_probs=18.5
Q ss_pred cccHHHHHHHHcCCcEeEEeeccC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRV 31 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~v 31 (95)
+..+ ++..+++|+.++|||+.+-
T Consensus 114 ~~e~-L~~L~~~g~~l~I~Tn~~~ 136 (260)
T PLN03243 114 SREF-VQALKKHEIPIAVASTRPR 136 (260)
T ss_pred HHHH-HHHHHHCCCEEEEEeCcCH
Confidence 3344 7888999999999999864
No 35
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=28.93 E-value=51 Score=23.40 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=18.9
Q ss_pred cccHHHHHHHHcCCcEeEEeeccCC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRVT 32 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~vt 32 (95)
+..+ ++..+++|..++|||+..-.
T Consensus 97 ~~~~-l~~l~~~g~~~~i~S~~~~~ 120 (222)
T PRK10826 97 VREA-LALCKAQGLKIGLASASPLH 120 (222)
T ss_pred HHHH-HHHHHHCCCeEEEEeCCcHH
Confidence 4455 78889999999999996543
No 36
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=28.88 E-value=51 Score=23.98 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=18.1
Q ss_pred cccHHHHHHHHcCCcEeEEeecc
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
+..+ ++..+++|+..||+|+..
T Consensus 98 ~~e~-L~~Lk~~g~~~~i~Tn~~ 119 (224)
T PRK14988 98 TVPF-LEALKASGKRRILLTNAH 119 (224)
T ss_pred HHHH-HHHHHhCCCeEEEEeCcC
Confidence 4455 788999999999999964
No 37
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=28.34 E-value=45 Score=24.28 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=17.2
Q ss_pred ccHHHHHHHHcCCcEeEEeecc
Q psy17926 9 RRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 9 ~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
..+ ++..+++|...||||+..
T Consensus 105 ~e~-L~~L~~~g~~l~IvT~~~ 125 (253)
T TIGR01422 105 IEV-IAYLRARGIKIGSTTGYT 125 (253)
T ss_pred HHH-HHHHHHCCCeEEEECCCc
Confidence 445 788889999999998765
No 38
>PLN02811 hydrolase
Probab=28.21 E-value=52 Score=23.52 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=18.1
Q ss_pred cccHHHHHHHHcCCcEeEEeeccC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRV 31 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~v 31 (95)
+..+ ++..++.|...||||++.-
T Consensus 83 v~e~-l~~L~~~g~~~~i~S~~~~ 105 (220)
T PLN02811 83 AERL-VRHLHAKGIPIAIATGSHK 105 (220)
T ss_pred HHHH-HHHHHHCCCcEEEEeCCch
Confidence 3444 7888999999999997643
No 39
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=28.08 E-value=47 Score=24.55 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=17.4
Q ss_pred cccHHHHHHHHcCCcEeEEeecc
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
+..+ ++..+++|...||||+..
T Consensus 106 ~~el-L~~L~~~g~~l~I~T~~~ 127 (267)
T PRK13478 106 VLEV-IAALRARGIKIGSTTGYT 127 (267)
T ss_pred HHHH-HHHHHHCCCEEEEEcCCc
Confidence 3445 788999999999998653
No 40
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=28.07 E-value=48 Score=26.85 Aligned_cols=26 Identities=12% Similarity=-0.024 Sum_probs=20.4
Q ss_pred cccHHHHHHHHcCCcEeEEeeccCCCC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRVTHA 34 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~vthA 34 (95)
+..+ +++.+++|+.+||||+++-..+
T Consensus 335 ~~e~-L~~Lk~~g~~l~IvS~~~~~~~ 360 (459)
T PRK06698 335 VKEI-FTYIKENNCSIYIASNGLTEYL 360 (459)
T ss_pred HHHH-HHHHHHCCCeEEEEeCCchHHH
Confidence 4556 8899999999999999755433
No 41
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=26.93 E-value=58 Score=21.99 Aligned_cols=20 Identities=0% Similarity=-0.042 Sum_probs=16.4
Q ss_pred ccHHHHHHHHcCCcEeEEeec
Q psy17926 9 RRVQTYVAYGTGKATGIVTNT 29 (95)
Q Consensus 9 ~ti~le~Ak~~Gk~tGiVTT~ 29 (95)
..+ +++.+++|+.+||+|+.
T Consensus 93 ~~~-L~~L~~~g~~~~i~s~~ 112 (185)
T TIGR01990 93 KNL-LDDLKKNNIKIALASAS 112 (185)
T ss_pred HHH-HHHHHHCCCeEEEEeCC
Confidence 344 78899999999999864
No 42
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=26.30 E-value=56 Score=24.86 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=18.0
Q ss_pred cccHHHHHHHHcCCcEeEEeeccC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRV 31 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~v 31 (95)
+..+ ++..++.|+.+||||++..
T Consensus 149 v~el-L~~L~~~g~~l~IvTn~~~ 171 (286)
T PLN02779 149 VLRL-MDEALAAGIKVAVCSTSNE 171 (286)
T ss_pred HHHH-HHHHHHCCCeEEEEeCCCH
Confidence 3344 7788899999999999743
No 43
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=26.11 E-value=57 Score=22.94 Aligned_cols=22 Identities=5% Similarity=0.078 Sum_probs=17.8
Q ss_pred cccHHHHHHHHcCCcEeEEeecc
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
+..+ ++..+++|..++|||.+.
T Consensus 90 ~~~~-l~~l~~~g~~~~IvS~~~ 111 (219)
T TIGR00338 90 AEEL-VKTLKEKGYKVAVISGGF 111 (219)
T ss_pred HHHH-HHHHHHCCCEEEEECCCc
Confidence 3445 788899999999999864
No 44
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=25.80 E-value=58 Score=23.54 Aligned_cols=22 Identities=32% Similarity=0.214 Sum_probs=18.3
Q ss_pred cccHHHHHHHHcCCcEeEEeecc
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
+..+ +++.+++|+..||||+..
T Consensus 100 ~~~~-L~~L~~~g~~l~i~Tn~~ 121 (229)
T PRK13226 100 VEGM-LQRLECAGCVWGIVTNKP 121 (229)
T ss_pred HHHH-HHHHHHCCCeEEEECCCC
Confidence 3445 889999999999999975
No 45
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=24.65 E-value=67 Score=23.47 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.7
Q ss_pred HHHHHHcCCcEeEEeecc
Q psy17926 13 TYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 13 le~Ak~~Gk~tGiVTT~~ 30 (95)
+++.+++|+.++|||+..
T Consensus 33 L~~L~~~G~~~~ivTN~~ 50 (242)
T TIGR01459 33 LNKIIAQGKPVYFVSNSP 50 (242)
T ss_pred HHHHHHCCCEEEEEeCCC
Confidence 677888999999999964
No 46
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=24.44 E-value=1.1e+02 Score=23.39 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=32.7
Q ss_pred ccCCCCCcccceeccCC---CCCccCCCCccccccChHHHHHHHhhcCCCCCccEEE
Q psy17926 29 TRVTHATPAAFYGHSPS---RYWEDDGKVPVISRKSCKDLARQLVEDYPGKDINSFD 82 (95)
Q Consensus 29 ~~vthATPAa~yAH~~~---R~we~d~~~~~~~~~~~~dIA~Qlv~~~~g~~~dVil 82 (95)
.=|+|..|++.-....+ |+|...+ .-.||.|+++.+-.-..++.+++..
T Consensus 150 VliaH~~~~G~g~~~~~~cg~d~~~~~-----~~~G~~~l~~ai~~~~~~~~~~l~~ 201 (238)
T cd07397 150 ILLAHNGPSGLGSDAEDPCGRDWKPPG-----GDWGDPDLALAISQIQQGRQVPLVV 201 (238)
T ss_pred EEEeCcCCcCCCcccccccccccCCcC-----CCCCCHHHHHHHHHHhccCCCCEEE
Confidence 45789999988766665 7776321 1248999987775433556677764
No 47
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=24.22 E-value=68 Score=21.90 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=17.7
Q ss_pred cccHHHHHHHHcCCcEeEEeecc
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
+..+ +++.+++|..++|||.+.
T Consensus 85 ~~e~-l~~l~~~g~~~~IvS~~~ 106 (201)
T TIGR01491 85 AEEL-VRWLKEKGLKTAIVSGGI 106 (201)
T ss_pred HHHH-HHHHHHCCCEEEEEeCCc
Confidence 3445 788999999999999764
No 48
>PF14502 HTH_41: Helix-turn-helix domain
Probab=24.06 E-value=30 Score=20.65 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=17.8
Q ss_pred ccccccHHHHHHHHcCCcEeEEe
Q psy17926 5 LEKVRRVQTYVAYGTGKATGIVT 27 (95)
Q Consensus 5 ~~~~~ti~le~Ak~~Gk~tGiVT 27 (95)
++++.+| -|++++-+-+.|.|-
T Consensus 3 GdRi~tI-~e~~~~~~vs~GtiQ 24 (48)
T PF14502_consen 3 GDRIPTI-SEYSEKFGVSRGTIQ 24 (48)
T ss_pred CcccCCH-HHHHHHhCcchhHHH
Confidence 5678888 799999888888763
No 49
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=23.90 E-value=75 Score=22.16 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=18.5
Q ss_pred ccHHHHHHHHcCCcEeEEeeccCC
Q psy17926 9 RRVQTYVAYGTGKATGIVTNTRVT 32 (95)
Q Consensus 9 ~ti~le~Ak~~Gk~tGiVTT~~vt 32 (95)
..+ ++..+++|...||+|+..-.
T Consensus 112 ~~~-L~~l~~~g~~~~i~T~~~~~ 134 (197)
T TIGR01548 112 KGL-LRELHRAPKGMAVVTGRPRK 134 (197)
T ss_pred HHH-HHHHHHcCCcEEEECCCCHH
Confidence 455 78889999999999988544
No 50
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=23.65 E-value=73 Score=25.91 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=18.0
Q ss_pred ccccHHHHHHHHcCCcEeEEe
Q psy17926 7 KVRRVQTYVAYGTGKATGIVT 27 (95)
Q Consensus 7 ~~~ti~le~Ak~~Gk~tGiVT 27 (95)
+..+| .+.|+++|++|+.|+
T Consensus 101 ~~pTi-~e~a~~aG~~ta~v~ 120 (408)
T TIGR02335 101 RAPTI-LGEMSKAGVLTAVVT 120 (408)
T ss_pred CCchH-HHHHHHcCCeEEEEe
Confidence 56788 999999999999987
No 51
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=22.91 E-value=71 Score=23.76 Aligned_cols=22 Identities=9% Similarity=-0.026 Sum_probs=17.7
Q ss_pred ccHHHHHHHHcCCcEeEEeeccC
Q psy17926 9 RRVQTYVAYGTGKATGIVTNTRV 31 (95)
Q Consensus 9 ~ti~le~Ak~~Gk~tGiVTT~~v 31 (95)
..+ ++..+++|+.+||+|+...
T Consensus 101 ~e~-L~~Lk~~G~~l~I~Sn~s~ 122 (220)
T TIGR01691 101 PPA-LEAWLQLGLRLAVYSSGSV 122 (220)
T ss_pred HHH-HHHHHHCCCEEEEEeCCCH
Confidence 344 6788889999999999853
No 52
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=22.86 E-value=79 Score=20.42 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=16.9
Q ss_pred ccHHHHHHHHcCCcEeEEeecc
Q psy17926 9 RRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 9 ~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
..+ ++..++.|..+++||+..
T Consensus 83 ~~~-L~~l~~~~~~~~i~Sn~~ 103 (176)
T PF13419_consen 83 REL-LERLKAKGIPLVIVSNGS 103 (176)
T ss_dssp HHH-HHHHHHTTSEEEEEESSE
T ss_pred hhh-hhhcccccceeEEeecCC
Confidence 344 677888999999999884
No 53
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=22.50 E-value=65 Score=24.52 Aligned_cols=23 Identities=17% Similarity=0.029 Sum_probs=18.1
Q ss_pred HHHHHHcCCcEeEEeeccCCCCC
Q psy17926 13 TYVAYGTGKATGIVTNTRVTHAT 35 (95)
Q Consensus 13 le~Ak~~Gk~tGiVTT~~vthAT 35 (95)
+...+.+|+++++-||+++--..
T Consensus 18 ~~~~~~~g~~v~~TTTT~m~~P~ 40 (232)
T TIGR03172 18 AAEYRKEGYRVLVTTTTRMFLPE 40 (232)
T ss_pred HHHHHHCCCeEEEECCccccCCC
Confidence 44556689999999999996543
No 54
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=22.34 E-value=80 Score=21.31 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=16.5
Q ss_pred ccHHHHHHHHcCCcEeEEeec
Q psy17926 9 RRVQTYVAYGTGKATGIVTNT 29 (95)
Q Consensus 9 ~ti~le~Ak~~Gk~tGiVTT~ 29 (95)
..+ +++.++.|..++|+|+.
T Consensus 94 ~~~-l~~l~~~g~~i~i~S~~ 113 (185)
T TIGR02009 94 ENF-LKRLKKKGIAVGLGSSS 113 (185)
T ss_pred HHH-HHHHHHcCCeEEEEeCc
Confidence 344 78888899999999976
No 55
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=22.21 E-value=75 Score=22.16 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=16.2
Q ss_pred HHHHHHcCCcEeEEeecc
Q psy17926 13 TYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 13 le~Ak~~Gk~tGiVTT~~ 30 (95)
++..++.|+.++|+|+..
T Consensus 52 L~~Lk~~g~~l~I~Sn~~ 69 (170)
T TIGR01668 52 IEELKAAGRKLLIVSNNA 69 (170)
T ss_pred HHHHHHcCCEEEEEeCCc
Confidence 788899999999999975
No 56
>PLN02954 phosphoserine phosphatase
Probab=22.18 E-value=73 Score=22.47 Aligned_cols=25 Identities=8% Similarity=0.016 Sum_probs=19.4
Q ss_pred ccccHHHHHHHHcCCcEeEEeeccCC
Q psy17926 7 KVRRVQTYVAYGTGKATGIVTNTRVT 32 (95)
Q Consensus 7 ~~~ti~le~Ak~~Gk~tGiVTT~~vt 32 (95)
-+..+ +++.+++|..++|||...-.
T Consensus 88 g~~e~-l~~l~~~g~~~~IvS~~~~~ 112 (224)
T PLN02954 88 GIPEL-VKKLRARGTDVYLVSGGFRQ 112 (224)
T ss_pred cHHHH-HHHHHHCCCEEEEECCCcHH
Confidence 34455 78999999999999987533
No 57
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=22.07 E-value=73 Score=22.78 Aligned_cols=27 Identities=4% Similarity=-0.141 Sum_probs=20.4
Q ss_pred cccHHHHHHHHcCCcEeEEeeccCCCCC
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTRVTHAT 35 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~vthAT 35 (95)
+..+ ++++++.|..++|||+..-..+.
T Consensus 79 ~~e~-l~~l~~~g~~~~IvS~~~~~~i~ 105 (219)
T PRK09552 79 FHEF-VQFVKENNIPFYVVSGGMDFFVY 105 (219)
T ss_pred HHHH-HHHHHHcCCeEEEECCCcHHHHH
Confidence 3445 78999999999999988644333
No 58
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=21.59 E-value=78 Score=24.09 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=18.3
Q ss_pred cccHHHHHHHHcCCcEeEEeecc
Q psy17926 8 VRRVQTYVAYGTGKATGIVTNTR 30 (95)
Q Consensus 8 ~~ti~le~Ak~~Gk~tGiVTT~~ 30 (95)
+..+ +++.+++|...||||+.+
T Consensus 147 ~~e~-L~~L~~~gi~laIvSn~~ 168 (273)
T PRK13225 147 VADL-LAQLRSRSLCLGILSSNS 168 (273)
T ss_pred HHHH-HHHHHHCCCeEEEEeCCC
Confidence 4455 788999999999999876
No 59
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=20.83 E-value=1e+02 Score=21.12 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=18.2
Q ss_pred HHHHHHcCCcEeEEeeccCCCC
Q psy17926 13 TYVAYGTGKATGIVTNTRVTHA 34 (95)
Q Consensus 13 le~Ak~~Gk~tGiVTT~~vthA 34 (95)
++..+++|..++|||+..-..+
T Consensus 37 i~~Lk~~G~~i~IvTn~~~~~~ 58 (154)
T TIGR01670 37 IRCALKSGIEVAIITGRKAKLV 58 (154)
T ss_pred HHHHHHCCCEEEEEECCCCHHH
Confidence 6889999999999999765433
No 60
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=20.58 E-value=1.4e+02 Score=23.31 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=24.9
Q ss_pred HHHHHHcCCcEeEEeeccCCCC----Ccccceecc
Q psy17926 13 TYVAYGTGKATGIVTNTRVTHA----TPAAFYGHS 43 (95)
Q Consensus 13 le~Ak~~Gk~tGiVTT~~vthA----TPAa~yAH~ 43 (95)
.+.+++.|+++.||-+..++|. +|.+-+...
T Consensus 173 ~~al~~~~~RV~vIaSG~LSH~l~~~~~~~p~~~~ 207 (294)
T cd07372 173 REAIRKTGRRAVLLASNTLSHWHFHEEPAPPEDMS 207 (294)
T ss_pred HHHHHhcCCeEEEEEeCcccccCccCCCCCccccc
Confidence 4446778999999999999998 688777543
Done!