RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17926
(95 letters)
>1k7h_A Alkaline phosphatase; hydrolase, transferase, phosphomonoester,
extended beta SHEE triad, metal triad; HET: NAG; 1.92A
{Pandalus borealis} SCOP: c.76.1.1 PDB: 1shq_A* 1shn_A*
Length = 476
Score = 93.7 bits (233), Expect = 2e-24
Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 20 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPV--ISRKSCKDLARQLVEDYPGKD 77
G++TG+VT+TRVTHATPA Y H R WE+D V + C D+A QLV PGK+
Sbjct: 136 GRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEICDDIAEQLVFREPGKN 195
Query: 78 IN 79
Sbjct: 196 FK 197
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET:
NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB:
1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A*
Length = 484
Score = 84.5 bits (209), Expect = 5e-21
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 20 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKS-CKDLARQLVED 72
GK+ G+VT TRV HA+PA Y H+ +R W D VP +R+ C+D+A QL+ +
Sbjct: 140 GKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQDIATQLISN 193
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli}
PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B
1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A*
1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Length = 449
Score = 81.8 bits (202), Expect = 5e-20
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 20 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVP--VISRKSCKDLARQLVEDYPGKD 77
G ATG V+ + ATPAA H SR K + E
Sbjct: 140 GLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNAR 199
Query: 78 IN 79
+
Sbjct: 200 AD 201
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase;
HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A*
2w5x_A* 2iuc_A 2iuc_B
Length = 375
Score = 74.7 bits (184), Expect = 1e-17
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 13/53 (24%)
Query: 20 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVED 72
TG+V + +T ATPA+FY H+ +R E+ ++A + E
Sbjct: 122 NIKTGVVATSSITDATPASFYAHALNRGLEE-------------EIAMDMTES 161
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A
{Halobacterium salinarum R1} PDB: 2x98_A
Length = 473
Score = 73.7 bits (181), Expect = 3e-17
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 13/53 (24%)
Query: 20 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVED 72
G ATG++T T THATPAAF H R + ++ARQ +E+
Sbjct: 157 GYATGLITTTEATHATPAAFAAHVEDRGNQT-------------EIARQYIEE 196
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 73.8 bits (181), Expect = 4e-17
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 13/53 (24%)
Query: 20 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVED 72
GKATG+V++TR+THATPA+F H P R E+ +A ++
Sbjct: 103 GKATGLVSDTRLTHATPASFAAHQPHRSLEN-------------QIASDMLAT 142
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Length = 400
Score = 73.2 bits (180), Expect = 5e-17
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 13/53 (24%)
Query: 20 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVED 72
G +TG+ +V HATPAAF H+ SR + +A +++
Sbjct: 96 GMSTGVAVTAQVNHATPAAFLTHNESRKNYE-------------AIAADMLKS 135
>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage; HET: PRP 9DG;
1.05A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1qk3_A*
1qk4_A* 1qk5_A* 1dbr_A
Length = 233
Score = 27.6 bits (62), Expect = 0.48
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 44 PSRYWEDDGKVPVISRKS----CKDLARQLVEDYPGKDI 78
P K+ ++ + LA + Y G+++
Sbjct: 38 PPHCKPYIDKI-LLPGGLVKDRVEKLAYDIHRTYFGEEL 75
>2jbh_A Phosphoribosyltransferase domain-containing prote;
glycosyltransferase, purine salvage; HET: 5GP; 1.7A
{Homo sapiens}
Length = 225
Score = 27.5 bits (61), Expect = 0.52
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 44 PSRYWEDDGKVPVISRKS----CKDLARQLVEDYPGKDI 78
P Y+ D V +I + LA+ +++D DI
Sbjct: 32 PQHYYGDLEYV-LIPHGIIVDRIERLAKDIMKDIGYSDI 69
>3ozf_A Hypoxanthine-guanine-xanthine phosphoribosyltrans;
transferase-transferase inhibitor complex; HET: HPA;
1.94A {Plasmodium falciparum fcr-3} PDB: 3ozg_A*
1cjb_A*
Length = 250
Score = 26.9 bits (60), Expect = 0.83
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 44 PSRYWEDDGKVPVISRKS----CKDLARQLVEDYPGKDI 78
P+ Y + KV ++ + LA + + Y ++
Sbjct: 52 PAHYKKYLTKV-LVPNGVIKNRIEKLAYDIKKVYNNEEF 89
>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
flexibility, trans CIS peptide bond isomerization,
nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1
PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A*
2vfa_A*
Length = 217
Score = 26.8 bits (60), Expect = 0.85
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 44 PSRYWEDDGKVPVISRKS----CKDLARQLVEDYPGKDI 78
P+ Y ED +V I + LAR ++++ G I
Sbjct: 24 PNHYAEDLERV-FIPHGLIMDRTERLARDVMKEMGGHHI 61
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 26.4 bits (59), Expect = 1.4
Identities = 6/17 (35%), Positives = 8/17 (47%), Gaps = 2/17 (11%)
Query: 13 TYVAYGTGKATGIVTNT 29
T GT + G+V T
Sbjct: 252 TNCVEGTAR--GVVVYT 266
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 1.4
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 61 SCKDLARQLVEDYPGKDINSFDEFYPGKD------INAHQH 95
S +L ++ V+DY +N + P +N ++
Sbjct: 340 SISNLTQEQVQDY----VNKTNSHLPAGKQVEISLVNGAKN 376
Score = 25.0 bits (54), Expect = 5.9
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 7/23 (30%)
Query: 21 KATGIVTNTRVTHATPAAFYGHS 43
K+ G++ A F GHS
Sbjct: 1748 KSKGLIP-------ADATFAGHS 1763
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 26.4 bits (59), Expect = 1.6
Identities = 7/17 (41%), Positives = 8/17 (47%), Gaps = 2/17 (11%)
Query: 13 TYVAYGTGKATGIVTNT 29
T +A G GIV T
Sbjct: 213 TNIAAGKAL--GIVATT 227
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 26.1 bits (58), Expect = 1.8
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 2/17 (11%)
Query: 13 TYVAYGTGKATGIVTNT 29
T GT + G+V NT
Sbjct: 257 TMCLEGTAQ--GLVVNT 271
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.2 bits (57), Expect = 1.8
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 43 SPSRYWEDDG-KVPVISRKS----CKDLARQLVEDY 73
+ + G + P ++ CK ++VE +
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERF 38
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein
structure in midwest center for structural genomics,
MCSG; 2.01A {Staphylococcus epidermidis}
Length = 249
Score = 25.9 bits (56), Expect = 2.4
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 47 YWEDDGKVPVISRKSCKDLARQLVEDY 73
DG+V S +S + L R + Y
Sbjct: 192 GSHSDGRVSNSSSQSLQYLLRGSTKSY 218
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural
GENO protein structure initiative, midwest center for
structural genomics; HET: MLY MSE MLZ ADP; 1.66A
{Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Length = 302
Score = 25.3 bits (55), Expect = 3.3
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 14 YVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDG 52
Y+ GTG G + R+ GH R DD
Sbjct: 128 YITIGTGIGAGAIVEGRLLQGLSHPEMGHIYIRRHPDDV 166
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold,
structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus
thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A*
3acd_A*
Length = 181
Score = 25.1 bits (56), Expect = 3.4
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 59 RKSCKDLARQLVEDYPGKDI 78
+K ++L ++ DY GK
Sbjct: 20 KKRVEELGGEIARDYQGKTP 39
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase;
protein-nucleotide complex; HET: IMP; 2.20A
{Thermoanaerobacter tengcongensis} SCOP: c.61.1.1 PDB:
1r3u_A*
Length = 205
Score = 25.2 bits (56), Expect = 3.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 59 RKSCKDLARQLVEDYPGKDI 78
+ K+L + DY GKD+
Sbjct: 43 KAKVKELGEMITRDYEGKDL 62
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant,
inhibitor design, selectivity; 1.70A
{Thermoanaerobacter tengcongensis}
Length = 185
Score = 25.1 bits (56), Expect = 3.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 59 RKSCKDLARQLVEDYPGKDI 78
+ K+L + DY GKD+
Sbjct: 23 KAKVKELGEMITRDYEGKDL 42
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP;
2.10A {Leishmania tarentolae} SCOP: c.61.1.1
Length = 211
Score = 25.3 bits (56), Expect = 3.8
Identities = 6/54 (11%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 34 ATPAAFYGHSPSRYWEDDGKVPVISRKS----CKDLARQLVEDYPGKDINSFDE 83
+P+ G R + + +++++ A+++ DY + + +
Sbjct: 6 KSPSDHVGDVGRRNYPMSART-LVTQEQVWAATAKCAKKIAADYKDFHLTADNP 58
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding,
unfolding, apoptosis; 1.59A {Homo sapiens} SCOP:
a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Length = 94
Score = 24.7 bits (54), Expect = 3.9
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 56 VISRKSCKDLARQLVEDYPGKDINSFDEFY 85
V + + + A L++ KD +S+ FY
Sbjct: 45 VRNEPTQQQRAAMLIKMILKKDNDSYVSFY 74
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine
phosphoribosyltransferase; glycosyltransferase, purine
salvage, transferase (glycosyltransferase); HET: 5GP;
1.90A {Tritrichomonas foetus} SCOP: c.61.1.1
Length = 183
Score = 25.1 bits (56), Expect = 3.9
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 49 EDDGKVPVISRKS----CKDLARQLVEDYPGKDI 78
DD + + ++ ++LA +L E Y K+
Sbjct: 7 MDDLERVLYNQDDIQKRIRELAAELTEFYEDKNP 40
>3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine
phosphoribosyltransferase, salvage of nucleosides and
nucleotides; HET: GOL; 1.98A {Bacillus anthracis}
Length = 186
Score = 25.1 bits (56), Expect = 4.0
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 59 RKSCKDLARQLVEDYPGKDI 78
++ K+LA Q+ D+ G++I
Sbjct: 19 QEKVKELALQIERDFEGEEI 38
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine
phosphoribosyltransferase, 2-(N-morphol ethanesulfonic
acid (MES), IDP01892; HET: MES; 1.95A {Bacillus
anthracis str} PDB: 3h83_A* 3kb8_A*
Length = 204
Score = 24.8 bits (55), Expect = 5.0
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 49 EDDGKVPVISRKS----CKDLARQLVEDYPGKDI 78
D + +IS + +L + EDY
Sbjct: 27 NQDIEKVLISEEQIQEKVLELGAIIAEDYKNTVP 60
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 24.5 bits (54), Expect = 5.9
Identities = 4/43 (9%), Positives = 10/43 (23%), Gaps = 13/43 (30%)
Query: 53 KVPVISRKSCKDLARQLVEDYPGKDINS------FDEFYPGKD 89
+ + + C + Y I + +D
Sbjct: 147 TLNITTNAFCDAV-------YTSDTIYDDMICATDNTGMTDRD 182
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 24.6 bits (53), Expect = 6.2
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 56 VISRKSCKDLARQLVEDYPGKD 77
+ R+ L+ L E++ ++
Sbjct: 71 ALGRELMLQLSEFLCEEFRNRN 92
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 24.5 bits (53), Expect = 7.7
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 20 GKATGIVTNTRVTHATPAAFY 40
G A +VT +R + +Y
Sbjct: 500 GGAKVVVTTSRFSKQV-TDYY 519
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding;
2.29A {Homo sapiens}
Length = 1128
Score = 24.3 bits (52), Expect = 7.9
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 46 RYWEDDGKVPVISRKSCKDLARQLVEDYPGKDINSFDEFYP 86
+ ++ K +R+S L +V++ P ++ + +P
Sbjct: 1068 KIGQETDKTTTRNRESVYLLLDMIVQESPFLTMDLLESCFP 1108
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage
enzym; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB:
1a96_A* 1a95_A 1a98_A 1a97_A*
Length = 152
Score = 23.9 bits (52), Expect = 8.2
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 60 KSCKDLARQLVEDYPGKDI 78
+ LA +L+ K I
Sbjct: 14 IHARKLASRLMPSEQWKGI 32
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.4 bits (52), Expect = 9.4
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 54 VPVISRKSCKDLARQLVEDYPGKDINSFDEFYPGKDI 90
+ V + + V+D P K I S +E I
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMP-KSILSKEEI---DHI 54
>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics,
protein structure initiative, PSI, NESG; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.4.15.1
Length = 62
Score = 23.0 bits (50), Expect = 9.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 63 KDLARQLVEDYPGKDINSFDE 83
K +A++++E +PGK + FD
Sbjct: 10 KRIAKEMIETHPGKFTDDFDT 30
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
ribonucleotide reductase, nucleotide analogs, all enzyme
ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Length = 888
Score = 24.1 bits (52), Expect = 9.9
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 3 LDLEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAA 38
L + +R +Y+A G + G++ RV + T
Sbjct: 250 LHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARY 285
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.410
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,578,854
Number of extensions: 83464
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 49
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)