RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17926
(95 letters)
>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
(Pandalus borealis) [TaxId: 6703]}
Length = 476
Score = 61.7 bits (149), Expect = 2e-13
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 3 LDLEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVP--VISRK 60
LD + G++TG+VT+TRVTHATPA Y H R WE+D V +
Sbjct: 119 LDESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPE 178
Query: 61 SCKDLARQLVEDYPGKDIN 79
C D+A QLV PGK+
Sbjct: 179 ICDDIAEQLVFREPGKNFK 197
>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
[TaxId: 562]}
Length = 449
Score = 54.0 bits (129), Expect = 1e-10
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 16 AYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVP------VISRKSCKDLARQL 69
A G ATG V+ + ATPAA H SR + + + QL
Sbjct: 136 AKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQL 195
Query: 70 VEDYPGKDINSFDEFYPGKD 89
+ + + +
Sbjct: 196 LNARADVTLGGGAKTFAETA 215
>d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 479
Score = 52.4 bits (125), Expect = 4e-10
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 16 AYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKS-CKDLARQLVEDYP 74
A GK+ G+VT TRV HA+PA Y H+ +R W D VP +R+ C+D+A QL+ +
Sbjct: 136 AKKAGKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQDIATQLISNMD 195
Query: 75 GK 76
Sbjct: 196 ID 197
>d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR
{Bacillus subtilis [TaxId: 1423]}
Length = 176
Score = 31.0 bits (69), Expect = 0.011
Identities = 15/82 (18%), Positives = 21/82 (25%), Gaps = 5/82 (6%)
Query: 14 YVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVEDY 73
Y+ GTG G + R+ GH R DD + C
Sbjct: 7 YITIGTGIGAGAIVEGRLLQGLSHPEMGHIYIRRHPDDVY-----QGKCPYHGDCFEGLA 61
Query: 74 PGKDINSFDEFYPGKDINAHQH 95
G I + + Q
Sbjct: 62 SGPAIEARWGKKAADLSDIAQV 83
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase)
{Plasmodium falciparum [TaxId: 5833]}
Length = 228
Score = 25.7 bits (56), Expect = 0.83
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 44 PSRYWEDDGKVPVIS----RKSCKDLARQLVEDYPGKDI 78
P+ Y + KV ++ + + LA + + Y ++
Sbjct: 32 PAHYKKYLTKV-LVPNGVIKNRIEKLAYDIKKVYNNEEF 69
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId:
562]}
Length = 174
Score = 24.7 bits (54), Expect = 1.7
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 63 KDLARQLVEDYPGKDINSFDE 83
+ LAR++ GK I + +E
Sbjct: 22 EQLAREMAGQAKGKKIRNVEE 42
>d1z6ra3 c.55.1.10 (A:211-406) Mlc protein {Escherichia coli
[TaxId: 562]}
Length = 196
Score = 24.8 bits (53), Expect = 2.0
Identities = 10/84 (11%), Positives = 21/84 (25%), Gaps = 2/84 (2%)
Query: 14 YVAYGTGKATGIVTNTRVTHATP--AAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVE 71
V G++T+ + HA GH+ + ++E
Sbjct: 7 QVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILE 66
Query: 72 DYPGKDINSFDEFYPGKDINAHQH 95
+ S G+ +
Sbjct: 67 LAQLRLNQSMSSMLHGQPLTVDSL 90
>d1fsga_ c.61.1.1 (A:) Hypoxanthine-guanine-xanthine PRTase
{Toxoplasma gondii [TaxId: 5811]}
Length = 233
Score = 24.5 bits (53), Expect = 2.0
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 44 PSRYWEDDGKVPVIS----RKSCKDLARQLVEDYPGKDI 78
P K+ ++ + + LA + Y G+++
Sbjct: 38 PPHCKPYIDKI-LLPGGLVKDRVEKLAYDIHRTYFGEEL 75
>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase
{Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 24.3 bits (52), Expect = 2.7
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 14 YVAYGTGKATGIVTNTRVTHAT--PAAFYGHSPSRYWED 50
++ G G GI+ + + A G++ +
Sbjct: 6 WILTGKGIGAGIIIDGELYRGENGYAGEIGYTRVFNGNE 44
>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 62
Score = 23.0 bits (50), Expect = 3.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 63 KDLARQLVEDYPGKDINSFDE 83
K +A++++E +PGK + FD
Sbjct: 10 KRIAKEMIETHPGKFTDDFDT 30
>d1z7ga1 c.61.1.1 (A:4-217) Hypoxanthine-guanine PRTase (HGPRTase)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 214
Score = 23.8 bits (51), Expect = 4.2
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 44 PSRYWEDDGKVPVIS----RKSCKDLARQLVEDYPGKDI 78
P+ Y ED +V I + LAR ++++ G I
Sbjct: 21 PNHYAEDLERV-FIPHGLIMDRTERLARDVMKEMGGHHI 58
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 22.8 bits (49), Expect = 4.5
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 61 SCKDLARQLVEDYPGKDINSFDEF 84
+ K + +++ E+YP D+ +F
Sbjct: 34 TMKQICKKVYENYPTYDLTERKDF 57
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
s100a6 [TaxId: 9606]}
Length = 89
Score = 22.9 bits (49), Expect = 5.1
Identities = 8/46 (17%), Positives = 16/46 (34%)
Query: 46 RYWEDDGKVPVISRKSCKDLARQLVEDYPGKDINSFDEFYPGKDIN 91
+Y +G +S+K K+L ++ + D N
Sbjct: 17 KYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRN 62
>d1hgxa_ c.61.1.1 (A:) Hypoxanthine-guanine-xanthine PRTase
{Tritrichomonas foetus [TaxId: 5724]}
Length = 173
Score = 23.4 bits (50), Expect = 5.3
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 59 RKSCKDLARQLVEDYPGKDI 78
+K ++LA +L E Y K+
Sbjct: 15 QKRIRELAAELTEFYEDKNP 34
>d1z05a2 c.55.1.10 (A:209-405) Transcriptional regulator VC2007
{Vibrio cholerae [TaxId: 666]}
Length = 197
Score = 23.6 bits (50), Expect = 5.5
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 9/91 (9%)
Query: 14 YVAYGTGKATGIVTNTRVTHAT--PAAFYGH---SPSRYWEDDGKV----PVISRKSCKD 64
++ G GIV + RV GH P G V S ++ +D
Sbjct: 7 LISIHHGLGAGIVLDGRVLQGRHGNIGELGHIQIDPQGKRCHCGNYGCLETVASSQAIRD 66
Query: 65 LARQLVEDYPGKDINSFDEFYPGKDINAHQH 95
++ + + +E A
Sbjct: 67 QVTARIQAGEPSCLATVEEISIEDICAAAAD 97
>d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 23.1 bits (49), Expect = 5.7
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 59 RKSCKDLARQLVEDYPGKDI 78
+ + LA +L+ K I
Sbjct: 11 QIHARKLASRLMPSEQWKGI 30
>d1yfza1 c.61.1.1 (A:3-180) Xanthine-guanine PRTase (XPRTase)
{Thermoanaerobacter tengcongensis [TaxId: 119072]}
Length = 178
Score = 23.4 bits (50), Expect = 6.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 59 RKSCKDLARQLVEDYPGKDI 78
+ K+L + DY GKD+
Sbjct: 17 KAKVKELGEMITRDYEGKDL 36
>d1tc1a_ c.61.1.1 (A:) Hypoxanthine PRTase {Trypanosoma cruzi
[TaxId: 5693]}
Length = 184
Score = 23.0 bits (49), Expect = 6.7
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 59 RKSCKDLARQLVEDYPGKDINSFDE 83
R K++A+++ +DY GK + +
Sbjct: 15 RTRIKEVAKRIADDYKGKGLRPYVN 39
>d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId:
42739]}
Length = 319
Score = 23.3 bits (49), Expect = 8.0
Identities = 6/30 (20%), Positives = 8/30 (26%), Gaps = 1/30 (3%)
Query: 32 THATPAAFYGHSPSRYWED-DGKVPVISRK 60
+ A +R DG V S
Sbjct: 243 STLALLATGAVMINRASGQNDGLVSRCSSL 272
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon
Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Length = 153
Score = 22.6 bits (48), Expect = 8.8
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 8 VRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKD 64
VRRV+ KATG T V TP G++ +I + CK+
Sbjct: 97 VRRVKKSDMEKLAKATGAKIVTNVKDLTPEDL-GYAEVVEERKLAGENMIFVEGCKN 152
>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
catalytic domain {Helicobacter pylori [TaxId: 210]}
Length = 389
Score = 22.7 bits (49), Expect = 9.7
Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 11 VQTYVAYGTGKATGIVTNTRVTHATPAAFY 40
V T + GTG A G T T TP
Sbjct: 22 VTTMIGGGTGPADG----TNATTITPGRRN 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.410
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 386,344
Number of extensions: 16139
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 31
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)