BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17927
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase
pdb|1K7H|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase
Length = 476
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 48 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKS---CKDLARQLVEDYPGK 104
G++TG+VT+TRVTHATPA Y H R WE+D V V R+ C D+A QLV PGK
Sbjct: 136 GRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDV-VHDREDPEICDDIAEQLVFREPGK 194
Query: 105 DINL 108
+ +
Sbjct: 195 NFKV 198
>pdb|1SHN|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHN|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHQ|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
pdb|1SHQ|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
Length = 478
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 48 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKS---CKDLARQLVEDYPGK 104
G++TG+VT+TRVTHATPA Y H R WE+D V V R+ C D+A QLV PGK
Sbjct: 136 GRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDV-VHDREDPEICDDIAEQLVFREPGK 194
Query: 105 DINL 108
+ +
Sbjct: 195 NFKV 198
>pdb|3MK0|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK1|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK2|A Chain A, Placental Alkaline Phosphatase Complexed With Phe
pdb|2GLQ|A Chain A, X-Ray Structure Of Human Alkaline Phosphatase In Complex
With Strontium
pdb|1ZEF|A Chain A, Structure Of Alkaline Phosphatase From Human Placenta In
Complex With Its Uncompetitive Inhibitor L-Phe
pdb|1ZEB|A Chain A, X-ray Structure Of Alkaline Phosphatase From Human
Placenta In Complex With 5'-amp
Length = 484
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 48 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRK-SCKDLARQLVED 100
GK+ G+VT TRV HA+PA Y H+ +R W D VP +R+ C+D+A QL+ +
Sbjct: 140 GKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQDIATQLISN 193
>pdb|1ZED|A Chain A, Alkaline Phosphatase From Human Placenta In Complex With
P- Nitrophenyl-Phosphonate
Length = 484
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 48 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRK-SCKDLARQLVED 100
GK+ G+VT TRV HA+PA Y H+ +R W D VP +R+ C+D+A QL+ +
Sbjct: 140 GKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQDIATQLISN 193
>pdb|1EW2|A Chain A, Crystal Structure Of A Human Phosphatase
Length = 513
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 48 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRK-SCKDLARQLVED 100
GK+ G+VT TRV HA+PA Y H+ +R W D VP +R+ C+D+A QL+ +
Sbjct: 140 GKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQDIATQLISN 193
>pdb|3E2D|A Chain A, The 1.4 A Crystal Structure Of The Large And Cold-Active
Vibrio Sp. Alkaline Phosphatase
pdb|3E2D|B Chain B, The 1.4 A Crystal Structure Of The Large And Cold-Active
Vibrio Sp. Alkaline Phosphatase
Length = 502
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 8/46 (17%)
Query: 33 LEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWED 78
LEK ++ GKATG+V++TR+THATPA+F H P R E+
Sbjct: 96 LEKAKKA--------GKATGLVSDTRLTHATPASFAAHQPHRSLEN 133
>pdb|2X98|A Chain A, H.Salinarum Alkaline Phosphatase
pdb|2X98|B Chain B, H.Salinarum Alkaline Phosphatase
Length = 431
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 15/66 (22%)
Query: 37 RRVQTYV--AYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLA 94
+RV T + A G ATG++T T THATPAAF H V R + ++A
Sbjct: 101 QRVDTVLERASAQGYATGLITTTEATHATPAAFAAH-------------VEDRGNQTEIA 147
Query: 95 RQLVED 100
RQ +E+
Sbjct: 148 RQYIEE 153
>pdb|2IUC|B Chain B, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 51 TGIVTNTRVTHATPAAFYGHSPSRYWEDD 79
TG+V + +THATPA+FY H+ +R E++
Sbjct: 125 TGVVATSSITHATPASFYAHALNRGLEEE 153
>pdb|2IUC|A Chain A, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 51 TGIVTNTRVTHATPAAFYGHSPSRYWEDD 79
TG+V + +THATPA+FY H+ +R E++
Sbjct: 125 TGVVATSSITHATPASFYAHALNRGLEEE 153
>pdb|3A52|A Chain A, Crystal Structure Of Cold-Active Alkailne Phosphatase From
Psychrophile Shewanella Sp.
pdb|3A52|B Chain B, Crystal Structure Of Cold-Active Alkailne Phosphatase From
Psychrophile Shewanella Sp
Length = 400
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G +TG+ +V HATPAAF H+ SR
Sbjct: 91 MAKARGMSTGVAVTAQVNHATPAAFLTHNESR 122
>pdb|2W5X|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Glu
With Mg Bound In The M3 Site.
pdb|2W5X|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Glu
With Mg Bound In The M3 Site
Length = 375
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 51 TGIVTNTRVTHATPAAFYGHSPSRYWEDD 79
TG+V + +T ATPA+FY H+ +R E++
Sbjct: 125 TGVVATSSITEATPASFYAHALNRGLEEE 153
>pdb|2W5V|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Mg Bound In The M3 Site.
pdb|2W5V|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Mg Bound In The M3 Site.
pdb|2W5W|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Zn Bound In The M3 Site.
pdb|2W5W|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Zn Bound In The M3 Site
Length = 375
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 51 TGIVTNTRVTHATPAAFYGHSPSRYWEDD 79
TG+V + +T ATPA+FY H+ +R E++
Sbjct: 125 TGVVATSSITDATPASFYAHALNRGLEEE 153
>pdb|1KHJ|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Mimic Of
The Transition States With Aluminium Fluoride
pdb|1KHJ|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Mimic Of
The Transition States With Aluminium Fluoride
pdb|1KHK|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n)
pdb|1KHK|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n)
pdb|1KHL|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Complex
With Phosphate
pdb|1KHL|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Complex
With Phosphate
pdb|1KHN|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Zinc Form
pdb|1KHN|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Zinc Form
Length = 449
Score = 32.0 bits (71), Expect = 0.090, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + HATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQHATPAALVAHVTSR 166
>pdb|2ANH|A Chain A, Alkaline Phosphatase (D153h)
pdb|2ANH|B Chain B, Alkaline Phosphatase (D153h)
Length = 446
Score = 32.0 bits (71), Expect = 0.092, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + HATPAA H SR
Sbjct: 132 MAKAAGLATGNVSTAELQHATPAALVAHVTSR 163
>pdb|1Y7A|A Chain A, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN
Presence Of Cobalt At 1.77 A Resolution
pdb|1Y7A|B Chain B, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN
Presence Of Cobalt At 1.77 A Resolution
Length = 449
Score = 32.0 bits (71), Expect = 0.093, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + HATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQHATPAALVAHVTSR 166
>pdb|1ANI|A Chain A, Alkaline Phosphatase (D153h, K328h)
pdb|1ANI|B Chain B, Alkaline Phosphatase (D153h, K328h)
Length = 446
Score = 32.0 bits (71), Expect = 0.093, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + HATPAA H SR
Sbjct: 132 MAKAAGLATGNVSTAELQHATPAALVAHVTSR 163
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSR|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
Length = 375
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 4 FDIVSIKQEHKLSTGSIAVFKPFLLMKLDLEKVRRVQTYVAYGTGKATGIVTNTRVTHAT 63
FD+ + Q L + + + + ++ D+ ++R Q ++ T +A GI+ + VT+ +
Sbjct: 51 FDVSHMLQTKILGSDRVKLMESLVVG--DIAELRPNQGTLSLFTNEAGGILDDLIVTNTS 108
Query: 64 PAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVEDYPGKDINLKPLQS 113
Y S + WE D + + ++L Q G+D+ L+ L +
Sbjct: 109 EGHLYVVSNAGCWEKD---LALMQDKVRELQNQ------GRDVGLEVLDN 149
>pdb|1KH4|A Chain A, E. Coli Alkaline Phosphatase Mutant (D330n) In Complex
With Phosphate
pdb|1KH4|B Chain B, E. Coli Alkaline Phosphatase Mutant (D330n) In Complex
With Phosphate
pdb|1KH5|A Chain A, E. Coli Alkaline Phosphatase Mutant (D330n) Mimic Of The
Transition States With Aluminium Fluoride
pdb|1KH5|B Chain B, E. Coli Alkaline Phosphatase Mutant (D330n) Mimic Of The
Transition States With Aluminium Fluoride
pdb|1KH9|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153gd330n) Complex
With Phosphate
pdb|1KH9|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153gd330n) Complex
With Phosphate
Length = 449
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1ALK|A Chain A, Reaction Mechanism Of Alkaline Phosphatase Based On
Crystal Structures. Two Metal Ion Catalysis
pdb|1ALK|B Chain B, Reaction Mechanism Of Alkaline Phosphatase Based On
Crystal Structures. Two Metal Ion Catalysis
Length = 449
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1ALH|A Chain A, Kinetics And Crystal Structure Of A Mutant E. Coli
Alkaline Phosphatase (Asp-369-->asn): A Mechanism
Involving One Zinc Per Active Site
pdb|1ALH|B Chain B, Kinetics And Crystal Structure Of A Mutant E. Coli
Alkaline Phosphatase (Asp-369-->asn): A Mechanism
Involving One Zinc Per Active Site
Length = 446
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 132 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 163
>pdb|1ELY|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102c)
pdb|1ELY|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102c)
Length = 449
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|3DPC|A Chain A, Structure Of E.Coli Alkaline Phosphatase Mutant In Complex
With A Phosphorylated Peptide
pdb|3DPC|B Chain B, Structure Of E.Coli Alkaline Phosphatase Mutant In Complex
With A Phosphorylated Peptide
Length = 455
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1ELX|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102a)
pdb|1ELX|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102a)
Length = 449
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1ELZ|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102g)
pdb|1ELZ|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102g)
Length = 449
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1ALJ|A Chain A, Alkaline Phosphatase Mutant (H412n)
pdb|1ALJ|B Chain B, Alkaline Phosphatase Mutant (H412n)
pdb|1ALI|A Chain A, Alkaline Phosphatase Mutant (H412n)
pdb|1ALI|B Chain B, Alkaline Phosphatase Mutant (H412n)
Length = 449
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1ANJ|A Chain A, Alkaline Phosphatase (K328h)
pdb|1ANJ|B Chain B, Alkaline Phosphatase (K328h)
Length = 446
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 132 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 163
>pdb|1URB|A Chain A, Alkaline Phosphatase (N51mg)
pdb|1URB|B Chain B, Alkaline Phosphatase (N51mg)
pdb|1URA|A Chain A, Alkaline Phosphatase (D51zn)
pdb|1URA|B Chain B, Alkaline Phosphatase (D51zn)
Length = 446
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 132 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 163
>pdb|3BDG|B Chain B, Crystal Structure Of Wild-TypeT155V MIXED DIMER OF E. COLI
ALKALINE Phosphatase
Length = 458
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 136 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 167
>pdb|3BDH|A Chain A, Crystal Structure Of Zinc-Deficient Wild-Type E. Coli
Alkaline Phosphatase
pdb|3BDH|B Chain B, Crystal Structure Of Zinc-Deficient Wild-Type E. Coli
Alkaline Phosphatase
Length = 458
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 136 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 167
>pdb|2G9Y|A Chain A, Structure Of S102t E. Coli Alkaline Phosphatase In
Presence Of Phosphate At 2.00 A Resolution
pdb|2G9Y|B Chain B, Structure Of S102t E. Coli Alkaline Phosphatase In
Presence Of Phosphate At 2.00 A Resolution
Length = 449
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1HQA|A Chain A, Alkaline Phosphatase (H412q)
pdb|1HQA|B Chain B, Alkaline Phosphatase (H412q)
Length = 449
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1ED8|A Chain A, Structure Of E. Coli Alkaline Phosphatase Inhibited By The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED8|B Chain B, Structure Of E. Coli Alkaline Phosphatase Inhibited By The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED9|A Chain A, Structure Of E. Coli Alkaline Phosphatase Without The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED9|B Chain B, Structure Of E. Coli Alkaline Phosphatase Without The
Inorganic Phosphate At 1.75a Resolution
pdb|1EW8|A Chain A, Alkaline Phosphatase (e.c. 3.1.3.1) Complex With
Phosphonoacetic Acid
pdb|1EW8|B Chain B, Alkaline Phosphatase (e.c. 3.1.3.1) Complex With
Phosphonoacetic Acid
pdb|1EW9|A Chain A, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Mercaptomethyl Phosphonate
pdb|1EW9|B Chain B, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Mercaptomethyl Phosphonate
pdb|1Y6V|A Chain A, Structure Of E. Coli Alkaline Phosphatase In Presence Of
Cobalt At 1.60 A Resolution
pdb|1Y6V|B Chain B, Structure Of E. Coli Alkaline Phosphatase In Presence Of
Cobalt At 1.60 A Resolution
pdb|3TG0|A Chain A, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|B Chain B, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|C Chain C, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|D Chain D, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
Length = 449
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1HJK|A Chain A, Alkaline Phosphatase Mutant H331q
pdb|1HJK|B Chain B, Alkaline Phosphatase Mutant H331q
Length = 449
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1B8J|A Chain A, Alkaline Phosphatase Complexed With Vanadate
pdb|1B8J|B Chain B, Alkaline Phosphatase Complexed With Vanadate
pdb|2GA3|A Chain A, Structure Of S102t E. Coli Alkaline Phosphatase-Phosphate
Intermediate At 2.20a Resolution
pdb|2GA3|B Chain B, Structure Of S102t E. Coli Alkaline Phosphatase-Phosphate
Intermediate At 2.20a Resolution
Length = 449
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|3DYC|A Chain A, Structure Of E322y Alkaline Phosphatase In Complex With
Inorganic Phosphate
pdb|3DYC|B Chain B, Structure Of E322y Alkaline Phosphatase In Complex With
Inorganic Phosphate
Length = 449
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTSR 166
>pdb|1KH7|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153gd330n)
pdb|1KH7|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153gd330n)
Length = 449
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQGATPAALVAHVTSR 166
>pdb|1AJD|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJD|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJC|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJC|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJB|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJB|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJA|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJA|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
Length = 449
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + ATPAA H SR
Sbjct: 135 MAKAAGLATGNVSTAELQGATPAALVAHVTSR 166
>pdb|1LHL|A Chain A, Role Of Proline Residues In Human Lysozyme Stability: A
Scanning Calorimetric Study Combined With X-Ray
Structure Analysis Of Proline Mutants
Length = 130
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 56 NTRVTHATP---AAFYG--HSPSRYWEDDGKVP 83
NTR T+ P + YG SRYW +DGK P
Sbjct: 39 NTRATNYNPGDRSTDYGIFQINSRYWCNDGKTP 71
>pdb|2GSX|A Chain A, Complement Receptor Type 2
Length = 951
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 25 PFLLMKLDLEKVRRVQTYVAYG---TGKATGIVTNTRVTHATPAAFY--GHSPSRYWED- 78
P L KL L V+ ++A G +GK N VT + F G S R D
Sbjct: 569 PAPLCKLSLLAVQCSHVHIANGYKISGKEAPYFYNDTVTFKCYSGFTLKGSSQIRCKADN 628
Query: 79 --DGKVPVISRKSCKDLARQLVEDYPGKDINL 108
D ++PV +++C+ + + L E G + L
Sbjct: 629 TWDPEIPVCEKETCQHVRQSLQELPAGSRVEL 660
>pdb|3P3A|A Chain A, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
pdb|3P3A|B Chain B, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
Length = 320
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 47 TGKATGIVTNTRVTHATPAAFYGHSPSRYWEDD-----GKVPVISRKSCKDLA--RQLVE 99
TG+ T + TR T P +P R ++DD GK P+I +S ++ R +
Sbjct: 154 TGRDTTLEVPTRQTSGYPVVERNDAPIRAFKDDVLRVLGKEPLIDVRSPQEYTGERTHMP 213
Query: 100 DYP 102
DYP
Sbjct: 214 DYP 216
>pdb|3BDF|A Chain A, Crystal Structure Of Metal-Free E. Coli Alkaline
Phosphatase (T155v)
pdb|3BDF|B Chain B, Crystal Structure Of Metal-Free E. Coli Alkaline
Phosphatase (T155v)
pdb|3BDG|A Chain A, Crystal Structure Of Wild-TypeT155V MIXED DIMER OF E. COLI
ALKALINE Phosphatase
Length = 458
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPSR 74
+A G ATG V+ + A PAA H SR
Sbjct: 136 MAKAAGLATGNVSTAELQDAVPAALVAHVTSR 167
>pdb|3CMR|A Chain A, E. Coli Alkaline Phosphatase Mutant R166s In Complex With
Phosphate
pdb|3CMR|B Chain B, E. Coli Alkaline Phosphatase Mutant R166s In Complex With
Phosphate
Length = 449
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 43 VAYGTGKATGIVTNTRVTHATPAAFYGHSPS 73
+A G ATG V+ + ATPAA H S
Sbjct: 135 MAKAAGLATGNVSTAELQDATPAALVAHVTS 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,514,442
Number of Sequences: 62578
Number of extensions: 133399
Number of successful extensions: 559
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 47
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)