Query psy17927
Match_columns 122
No_of_seqs 129 out of 901
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 17:41:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4126|consensus 100.0 4.3E-33 9.3E-38 241.4 5.9 106 7-113 134-245 (529)
2 smart00098 alkPPc Alkaline pho 100.0 1.2E-30 2.5E-35 222.4 6.5 96 7-113 64-160 (419)
3 PRK10518 alkaline phosphatase; 100.0 6.3E-29 1.4E-33 214.7 6.3 95 7-113 134-234 (476)
4 cd00016 alkPPc Alkaline phosph 99.9 2.7E-28 5.8E-33 205.2 6.8 93 7-113 68-161 (384)
5 PF00245 Alk_phosphatase: Alka 99.9 2.6E-28 5.7E-33 207.5 0.8 96 7-112 64-160 (421)
6 COG1785 PhoA Alkaline phosphat 99.9 7.5E-26 1.6E-30 195.7 4.7 91 7-118 121-215 (482)
7 cd07397 MPP_DevT Myxococcus xa 53.2 20 0.00043 29.0 3.7 53 56-113 149-204 (238)
8 COG3119 AslA Arylsulfatase A a 36.8 35 0.00075 29.5 2.9 58 8-66 60-120 (475)
9 TIGR01149 mtrG N5-methyltetrah 34.6 11 0.00025 25.5 -0.3 20 33-52 25-44 (70)
10 PRK06769 hypothetical protein; 31.6 41 0.00088 24.9 2.2 23 35-58 32-54 (173)
11 PF04210 MtrG: Tetrahydrometha 31.5 16 0.00035 24.8 0.0 20 33-52 25-44 (70)
12 PRK01026 tetrahydromethanopter 30.8 14 0.00031 25.4 -0.3 20 33-52 28-47 (77)
13 PRK11587 putative phosphatase; 30.4 40 0.00087 25.4 2.1 24 35-59 87-110 (218)
14 TIGR01509 HAD-SF-IA-v3 haloaci 29.2 50 0.0011 23.3 2.3 25 36-61 90-114 (183)
15 PRK08942 D,D-heptose 1,7-bisph 29.0 49 0.0011 24.2 2.3 23 35-58 33-55 (181)
16 TIGR01664 DNA-3'-Pase DNA 3'-p 28.8 48 0.001 24.6 2.2 22 36-58 47-68 (166)
17 PRK14545 nucleoside diphosphat 27.4 75 0.0016 23.4 3.0 53 34-100 18-70 (139)
18 TIGR00213 GmhB_yaeD D,D-heptos 27.2 55 0.0012 24.0 2.3 23 35-58 30-52 (176)
19 TIGR01428 HAD_type_II 2-haloal 27.1 57 0.0012 23.9 2.4 24 35-59 96-119 (198)
20 PF04461 DUF520: Protein of un 26.7 22 0.00047 27.6 0.0 9 1-9 1-9 (160)
21 TIGR02253 CTE7 HAD superfamily 26.2 59 0.0013 24.0 2.3 25 36-61 99-123 (221)
22 TIGR01449 PGP_bact 2-phosphogl 24.8 65 0.0014 23.6 2.3 23 36-59 90-112 (213)
23 TIGR00682 lpxK tetraacyldisacc 24.4 1.1E+02 0.0023 25.6 3.7 43 13-57 24-67 (311)
24 TIGR03417 chol_sulfatase choli 23.5 49 0.0011 28.7 1.6 20 36-56 81-100 (500)
25 PRK05412 putative nucleotide-b 23.0 39 0.00084 26.3 0.8 9 1-9 1-9 (161)
26 KOG3867|consensus 22.3 69 0.0015 29.1 2.3 24 37-60 117-140 (528)
27 TIGR01549 HAD-SF-IA-v1 haloaci 22.1 76 0.0017 22.0 2.1 24 36-60 69-92 (154)
28 PRK01906 tetraacyldisaccharide 22.1 1.3E+02 0.0027 25.5 3.8 44 13-58 52-96 (338)
29 TIGR01681 HAD-SF-IIIC HAD-supe 22.1 72 0.0016 22.4 2.0 22 35-57 33-54 (128)
30 PRK09456 ?-D-glucose-1-phospha 21.8 73 0.0016 23.6 2.1 26 35-61 88-113 (199)
31 PF02606 LpxK: Tetraacyldisacc 21.7 1.3E+02 0.0028 25.2 3.7 44 12-57 30-74 (326)
32 TIGR03351 PhnX-like phosphonat 21.7 80 0.0017 23.4 2.3 22 37-59 93-114 (220)
33 TIGR01656 Histidinol-ppas hist 21.5 85 0.0018 22.3 2.3 22 36-58 32-53 (147)
34 PLN02770 haloacid dehalogenase 20.9 80 0.0017 24.5 2.2 22 36-58 113-134 (248)
35 TIGR02247 HAD-1A3-hyp Epoxide 20.7 86 0.0019 23.2 2.3 23 36-59 99-121 (211)
No 1
>KOG4126|consensus
Probab=99.97 E-value=4.3e-33 Score=241.43 Aligned_cols=106 Identities=36% Similarity=0.476 Sum_probs=94.8
Q ss_pred eeeeecccccCCeeEeec--CCcccc---CCccccccHHHHHHHHcCCcEEEEeeccCCCCCcccceeecCCCCCcCCCC
Q psy17927 7 VSIKQEHKLSTGSIAVFK--PFLLMK---LDLEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGK 81 (122)
Q Consensus 7 ~~~~tG~Kt~~g~I~v~p--~~~~~~---~d~~~~~til~e~Ak~~GkatGiVTT~~vthATPAa~yAH~~~R~we~d~~ 81 (122)
+||..|+|+++|+|||.+ .+.+|. ...+.+.||+ ||||++||+||||||+||||||||++|||+++|+||||++
T Consensus 134 TAylcGvK~n~gtiGv~a~v~~~~C~~~~~~~~~v~SIl-~wAq~AGk~tG~VTTTRvThAsPag~yAH~anR~wE~D~~ 212 (529)
T KOG4126|consen 134 TAYLCGVKTNYGTIGVSAAVRFNDCGASANEGNHVISIL-EWAQLAGKSTGLVTTTRVTHASPAGAYAHVANRNWECDAE 212 (529)
T ss_pred HHHhhcccccccccccccccccCCccccccccccchHHH-HHHHHhCcccceEEEeeeccCCchhhhhcccccccccccc
Confidence 688999999999999987 223333 2377999998 9999999999999999999999999999999999999999
Q ss_pred Cccccc-cChHHHHHHHhhcCCCCCceEEecCC
Q psy17927 82 VPVISR-KSCKDLARQLVEDYPGKDINLKPLQS 113 (122)
Q Consensus 82 ~~~~~~-~~~~dIA~Qlv~~~~g~~ldVim~~~ 113 (122)
|+.+++ .+|.|||+||+++++|++|||||=++
T Consensus 213 v~~~~~~~~c~DiA~QLi~~~~G~~l~Vi~GGG 245 (529)
T KOG4126|consen 213 VPASAGGEGCQDIARQLIEQPVGKNLDVILGGG 245 (529)
T ss_pred ccccccccchHHHHHHHhccCCCCceEEEecCC
Confidence 999765 58999999999999999999999443
No 2
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=99.96 E-value=1.2e-30 Score=222.42 Aligned_cols=96 Identities=38% Similarity=0.510 Sum_probs=87.6
Q ss_pred eeeeecccccCCeeEeecCCccccCCccccccHHHHHHHHcCCcEEEEeeccCCCCCcccceeecCCCCCcCCCCCcccc
Q psy17927 7 VSIKQEHKLSTGSIAVFKPFLLMKLDLEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVIS 86 (122)
Q Consensus 7 ~~~~tG~Kt~~g~I~v~p~~~~~~~d~~~~~til~e~Ak~~GkatGiVTT~~vthATPAa~yAH~~~R~we~d~~~~~~~ 86 (122)
++++||+||++|+|||+|+ .+++++||+ ||||++||+||||||++|||||||+||||+++|+||++.+++...
T Consensus 64 TA~atG~KT~ng~Igvd~~------~~~~~~tIl-e~Ak~~G~~tGiVTT~~ithATPAafyAH~~~R~~e~~~~i~~~~ 136 (419)
T smart00098 64 TAYLCGVKTYNGAIGVDAA------TGKEVPSVL-EWAKKAGKSTGLVTTTRITHATPAATYAHVASRKWYNDADIPAEA 136 (419)
T ss_pred eehhhcccccCceeeecCC------CCCcchhHH-HHHHHcCCcEEEEeCcccCCCcchhheeecccccccchhhhHHHH
Confidence 7899999999999999773 278999998 999999999999999999999999999999999999999998865
Q ss_pred c-cChHHHHHHHhhcCCCCCceEEecCC
Q psy17927 87 R-KSCKDLARQLVEDYPGKDINLKPLQS 113 (122)
Q Consensus 87 ~-~~~~dIA~Qlv~~~~g~~ldVim~~~ 113 (122)
. .+|.+||+||++. ++||||=++
T Consensus 137 ~~~~~~dIa~Ql~~~----~~dVilGGG 160 (419)
T smart00098 137 LENGCGDIARQLINN----RIDVLLGGG 160 (419)
T ss_pred hhcCCccHHHHHhhc----CCcEEEeCC
Confidence 3 5899999999997 799999543
No 3
>PRK10518 alkaline phosphatase; Provisional
Probab=99.95 E-value=6.3e-29 Score=214.74 Aligned_cols=95 Identities=21% Similarity=0.192 Sum_probs=82.5
Q ss_pred eeeeecccccCCeeEeecCCccccCCccccccHHHHHHHHcCCcEEEEeeccCCCCCcccceeecCCCCCcCCCCCcccc
Q psy17927 7 VSIKQEHKLSTGSIAVFKPFLLMKLDLEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVIS 86 (122)
Q Consensus 7 ~~~~tG~Kt~~g~I~v~p~~~~~~~d~~~~~til~e~Ak~~GkatGiVTT~~vthATPAa~yAH~~~R~we~d~~~~~~~ 86 (122)
++++||+||+||+|||++ +++++.+|+ ||||++||+||||||++|||||||+||||+.+|+||+|.+.....
T Consensus 134 TA~aTGvKT~ng~IgVd~-------~g~~v~TIl-E~Ak~~G~aTGiVTT~~ithATPAafyAH~~~R~~~~~~~~~~~c 205 (476)
T PRK10518 134 TAWSTGVKTYNGALGVDI-------HGKDHPTLL-ELAKAAGKATGNVSTAELQDATPAALVAHVTSRKCYGPEETSEKC 205 (476)
T ss_pred HHHhhcccccCCeEeECC-------CCCcchhHH-HHHHHcCCcEEEEeccccCCCcchhhhhccchhhccCcccccccc
Confidence 579999999999999965 678999998 999999999999999999999999999999999999987633211
Q ss_pred ------ccChHHHHHHHhhcCCCCCceEEecCC
Q psy17927 87 ------RKSCKDLARQLVEDYPGKDINLKPLQS 113 (122)
Q Consensus 87 ------~~~~~dIA~Qlv~~~~g~~ldVim~~~ 113 (122)
.+++.+||+||++. ++||||=++
T Consensus 206 ~~~~~~~gg~~~IA~Ql~~~----~~DVilGGG 234 (476)
T PRK10518 206 PGNALENGGRGSITEQLLNT----RADVTLGGG 234 (476)
T ss_pred ccccccccchhHHHHHHhcc----CCeEEEeCC
Confidence 13456999999987 699999544
No 4
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=99.95 E-value=2.7e-28 Score=205.17 Aligned_cols=93 Identities=43% Similarity=0.572 Sum_probs=81.7
Q ss_pred eeeeecccccCCeeEeecCCcccc-CCccccccHHHHHHHHcCCcEEEEeeccCCCCCcccceeecCCCCCcCCCCCccc
Q psy17927 7 VSIKQEHKLSTGSIAVFKPFLLMK-LDLEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVI 85 (122)
Q Consensus 7 ~~~~tG~Kt~~g~I~v~p~~~~~~-~d~~~~~til~e~Ak~~GkatGiVTT~~vthATPAa~yAH~~~R~we~d~~~~~~ 85 (122)
++++||+||++|+|||+++....+ ...+++.+|+ |+||++||+||||||++||||||||||||+++|+||
T Consensus 68 TA~~tG~Kt~~~~igv~~~~~~~~~~~~~~~~ti~-e~ak~~G~~tGiVtT~~ithATPAa~~AH~~~R~~~-------- 138 (384)
T cd00016 68 TAYATGVKTNNGAIGVSADVSRDDTDNGKPVTSVL-EWAKAAGKATGIVTTTRVTHATPAAFYAHVPDRNWE-------- 138 (384)
T ss_pred hHhhhcccccCceeeecCCCCcccccCCcchhhHH-HHHHHcCCCEEEEeeeecCCCcchhhhccccccCCH--------
Confidence 689999999999999999543222 2357899998 999999999999999999999999999999999765
Q ss_pred cccChHHHHHHHhhcCCCCCceEEecCC
Q psy17927 86 SRKSCKDLARQLVEDYPGKDINLKPLQS 113 (122)
Q Consensus 86 ~~~~~~dIA~Qlv~~~~g~~ldVim~~~ 113 (122)
.+||+||+++.+|+++||||=++
T Consensus 139 -----~~Ia~q~~~~~~g~~~dv~~GGG 161 (384)
T cd00016 139 -----EDIAEQLIEEAPGRGIDVLLGGG 161 (384)
T ss_pred -----HHHHHHHhhccCCCCCeEEEeCC
Confidence 59999999998899999999543
No 5
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=99.94 E-value=2.6e-28 Score=207.55 Aligned_cols=96 Identities=39% Similarity=0.553 Sum_probs=72.1
Q ss_pred eeeeecccccCCeeEeecCCccccCCccccccHHHHHHHHcCCcEEEEeeccCCCCCcccceeecCCCCCcCCCCCcccc
Q psy17927 7 VSIKQEHKLSTGSIAVFKPFLLMKLDLEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVIS 86 (122)
Q Consensus 7 ~~~~tG~Kt~~g~I~v~p~~~~~~~d~~~~~til~e~Ak~~GkatGiVTT~~vthATPAa~yAH~~~R~we~d~~~~~~~ 86 (122)
++++||+||++|+|||++ +++++++|+ |+||++||+||||||++||||||||||||+.+|+||++-..+...
T Consensus 64 TA~atG~Kt~n~~igv~~-------~~~~~~ti~-e~Ak~~G~~tGvVtT~~ithATPAaf~Ah~~~R~~~~~ia~~~~~ 135 (421)
T PF00245_consen 64 TALATGVKTYNGAIGVDP-------DGKPLETIL-ELAKEAGKATGVVTTTRITHATPAAFYAHVPDRNWYNDIAEPDEQ 135 (421)
T ss_dssp HHHHHSS--BTT-BSBET-------TSCB---HH-HHHHHTT-EEEEEEEEETTSHHHHTTT--BSSTT-HHHHHHCTCH
T ss_pred eEEeeeeeeccCCeeECC-------CCCcchhHH-HHHHHhCCeeeeeecccccCCccceEEEecccccccchhhcchhh
Confidence 578999999999999975 789999998 999999999999999999999999999999999999975554432
Q ss_pred -ccChHHHHHHHhhcCCCCCceEEecC
Q psy17927 87 -RKSCKDLARQLVEDYPGKDINLKPLQ 112 (122)
Q Consensus 87 -~~~~~dIA~Qlv~~~~g~~ldVim~~ 112 (122)
..+|.||++||++.. +.+||||=+
T Consensus 136 ~~~g~~di~~q~~~~~--~~~Dv~lGG 160 (421)
T PF00245_consen 136 QLAGCPDIAQQLLESG--KNVDVILGG 160 (421)
T ss_dssp HCTTS--HHHHHHHCT--GG-SEEEEE
T ss_pred hhcCCcchHHHhhcCC--cccceEecC
Confidence 368999999999984 469999944
No 6
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=99.92 E-value=7.5e-26 Score=195.74 Aligned_cols=91 Identities=31% Similarity=0.349 Sum_probs=79.6
Q ss_pred eeeeecccccCCeeEeecCCccccCCccccccHHHHHHHHcCCcEEEEeeccCCCCCcccceeecCCCCCcCCCCCcccc
Q psy17927 7 VSIKQEHKLSTGSIAVFKPFLLMKLDLEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVIS 86 (122)
Q Consensus 7 ~~~~tG~Kt~~g~I~v~p~~~~~~~d~~~~~til~e~Ak~~GkatGiVTT~~vthATPAa~yAH~~~R~we~d~~~~~~~ 86 (122)
++++||+||+||+|||.+ .++++++|| |+||++||+||||||+|||||||||||||+.+|+
T Consensus 121 TA~atGvKTyNgaigv~~-------~~~~~~TiL-E~Ak~~GkaTGlVtTtriThATPAAf~AHv~~R~----------- 181 (482)
T COG1785 121 TAFATGVKTYNGAIGVDP-------NGKPLKTIL-ELAKEAGKATGLVTTTRITHATPAAFAAHVTSRD----------- 181 (482)
T ss_pred hhhhhceeccCcccccCC-------CCcccchHH-HHHHHhCcccceEEeeeccccChHHHHHhccccc-----------
Confidence 589999999999999966 689999998 9999999999999999999999999999999995
Q ss_pred ccChHHHHHHHhhcCC-CC--CceEEe-cCCCCCCC
Q psy17927 87 RKSCKDLARQLVEDYP-GK--DINLKP-LQSNNNNN 118 (122)
Q Consensus 87 ~~~~~dIA~Qlv~~~~-g~--~ldVim-~~~~~~~~ 118 (122)
++.+||+|++.... |+ ++||+| =+..+|..
T Consensus 182 --~~~~ia~~~~~~~~~~~~~~~DVllGGG~~~F~p 215 (482)
T COG1785 182 --DEDEIATQQICPGNAGRNDKVDVLLGGGRKYFLP 215 (482)
T ss_pred --chhHHHHHhhccccccccCCCCEEecCchhhccc
Confidence 56689999998744 55 599999 44455443
No 7
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=53.21 E-value=20 Score=28.99 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=38.3
Q ss_pred eccCCCCCcccceeecCC---CCCcCCCCCccccccChHHHHHHHhhcCCCCCceEEecCC
Q psy17927 56 NTRVTHATPAAFYGHSPS---RYWEDDGKVPVISRKSCKDLARQLVEDYPGKDINLKPLQS 113 (122)
Q Consensus 56 T~~vthATPAa~yAH~~~---R~we~d~~~~~~~~~~~~dIA~Qlv~~~~g~~ldVim~~~ 113 (122)
..=|+|+.|++.-....+ |+|...+ .-.+|.|+++.+-.-..++.++++.+++
T Consensus 149 ~VliaH~~~~G~g~~~~~~cg~d~~~~~-----~~~G~~~l~~ai~~~~~~~~~~l~~fGH 204 (238)
T cd07397 149 LILLAHNGPSGLGSDAEDPCGRDWKPPG-----GDWGDPDLALAISQIQQGRQVPLVVFGH 204 (238)
T ss_pred eEEEeCcCCcCCCcccccccccccCCcC-----CCCCCHHHHHHHHHHhccCCCCEEEeCC
Confidence 345789999988766655 7887532 1158999988876544677889998876
No 8
>COG3119 AslA Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]
Probab=36.75 E-value=35 Score=29.54 Aligned_cols=58 Identities=9% Similarity=-0.042 Sum_probs=37.1
Q ss_pred eeeecccccCCeeEeecCCccccCC-ccccccHHHHHHHHcCCcEEEEeeccCCCC--Cccc
Q psy17927 8 SIKQEHKLSTGSIAVFKPFLLMKLD-LEKVRRVQTYVAYGTGKATGIVTNTRVTHA--TPAA 66 (122)
Q Consensus 8 ~~~tG~Kt~~g~I~v~p~~~~~~~d-~~~~~til~e~Ak~~GkatGiVTT~~vthA--TPAa 66 (122)
+|+||..-...++......-.+... .....++ +|+.|++|+.|+.+----++.. +|++
T Consensus 60 ~l~TGr~~~~~G~~~~~~~~g~~~~l~~~~~Tl-a~~Lk~~GY~Ta~~GKwHl~~~~~~p~~ 120 (475)
T COG3119 60 ALLTGRYPFRTGVGGNAEPPGYPGGLPDEVPTL-AELLKEAGYYTALFGKWHLGEKDEDPAG 120 (475)
T ss_pred HHhhCCCccccccccccCCCCcccccCcccchH-HHHHHHcCChhhhcccccCCCCccCccc
Confidence 5778876665555443211011111 2345666 5999999999999988888877 7765
No 9
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=34.56 E-value=11 Score=25.50 Aligned_cols=20 Identities=45% Similarity=0.391 Sum_probs=15.9
Q ss_pred ccccccHHHHHHHHcCCcEE
Q psy17927 33 LEKVRRVQTYVAYGTGKATG 52 (122)
Q Consensus 33 ~~~~~til~e~Ak~~GkatG 52 (122)
.++++-+.+|.+|+.||++|
T Consensus 25 EeKVEf~~~E~~Qr~Gkk~G 44 (70)
T TIGR01149 25 EEKVEFVNGEVAQRIGKKVG 44 (70)
T ss_pred HHHHHHHHHHHHHHHhHHhh
Confidence 35666666799999999987
No 10
>PRK06769 hypothetical protein; Validated
Probab=31.65 E-value=41 Score=24.90 Aligned_cols=23 Identities=9% Similarity=-0.221 Sum_probs=18.9
Q ss_pred ccccHHHHHHHHcCCcEEEEeecc
Q psy17927 35 KVRRVQTYVAYGTGKATGIVTNTR 58 (122)
Q Consensus 35 ~~~til~e~Ak~~GkatGiVTT~~ 58 (122)
.+..+| +..++.|+..||||+..
T Consensus 32 gv~e~L-~~Lk~~G~~l~I~Tn~~ 54 (173)
T PRK06769 32 FTKASL-QKLKANHIKIFSFTNQP 54 (173)
T ss_pred CHHHHH-HHHHHCCCEEEEEECCc
Confidence 445666 88899999999999875
No 11
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=31.54 E-value=16 Score=24.80 Aligned_cols=20 Identities=35% Similarity=0.368 Sum_probs=15.6
Q ss_pred ccccccHHHHHHHHcCCcEE
Q psy17927 33 LEKVRRVQTYVAYGTGKATG 52 (122)
Q Consensus 33 ~~~~~til~e~Ak~~GkatG 52 (122)
.++++-.-+|.+|+.||++|
T Consensus 25 EeKvEf~~~Ei~Qr~GkkiG 44 (70)
T PF04210_consen 25 EEKVEFTNAEIAQRAGKKIG 44 (70)
T ss_pred HHHHHhHHHHHHHHHhHHhh
Confidence 35666666799999999987
No 12
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=30.81 E-value=14 Score=25.42 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=15.7
Q ss_pred ccccccHHHHHHHHcCCcEE
Q psy17927 33 LEKVRRVQTYVAYGTGKATG 52 (122)
Q Consensus 33 ~~~~~til~e~Ak~~GkatG 52 (122)
.++++-.-+|.+|+.||++|
T Consensus 28 EeKVEftn~Ei~Qr~GkkvG 47 (77)
T PRK01026 28 EEKVEFTNAEIFQRIGKKVG 47 (77)
T ss_pred HHHHHHHHHHHHHHHhHHhh
Confidence 35666666799999999987
No 13
>PRK11587 putative phosphatase; Provisional
Probab=30.36 E-value=40 Score=25.35 Aligned_cols=24 Identities=21% Similarity=0.037 Sum_probs=18.9
Q ss_pred ccccHHHHHHHHcCCcEEEEeeccC
Q psy17927 35 KVRRVQTYVAYGTGKATGIVTNTRV 59 (122)
Q Consensus 35 ~~~til~e~Ak~~GkatGiVTT~~v 59 (122)
.+..+| +..+++|+.+||||+...
T Consensus 87 g~~e~L-~~L~~~g~~~~ivTn~~~ 110 (218)
T PRK11587 87 GAIALL-NHLNKLGIPWAIVTSGSV 110 (218)
T ss_pred CHHHHH-HHHHHcCCcEEEEcCCCc
Confidence 345566 888999999999998753
No 14
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=29.24 E-value=50 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=19.5
Q ss_pred cccHHHHHHHHcCCcEEEEeeccCCC
Q psy17927 36 VRRVQTYVAYGTGKATGIVTNTRVTH 61 (122)
Q Consensus 36 ~~til~e~Ak~~GkatGiVTT~~vth 61 (122)
+..++ +..+++|+.++|||++...+
T Consensus 90 ~~~~l-~~l~~~g~~~~i~Tn~~~~~ 114 (183)
T TIGR01509 90 VEPLL-EALRARGKKLALLTNSPRDH 114 (183)
T ss_pred HHHHH-HHHHHCCCeEEEEeCCchHH
Confidence 44555 77888999999999987654
No 15
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=28.95 E-value=49 Score=24.24 Aligned_cols=23 Identities=13% Similarity=-0.054 Sum_probs=18.4
Q ss_pred ccccHHHHHHHHcCCcEEEEeecc
Q psy17927 35 KVRRVQTYVAYGTGKATGIVTNTR 58 (122)
Q Consensus 35 ~~~til~e~Ak~~GkatGiVTT~~ 58 (122)
.+..++ ++++++|+.+||+|+.+
T Consensus 33 gv~e~L-~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 33 GSIEAI-ARLKQAGYRVVVATNQS 55 (181)
T ss_pred CHHHHH-HHHHHCCCEEEEEeCCc
Confidence 345566 88889999999999875
No 16
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=28.79 E-value=48 Score=24.59 Aligned_cols=22 Identities=18% Similarity=0.019 Sum_probs=18.3
Q ss_pred cccHHHHHHHHcCCcEEEEeecc
Q psy17927 36 VRRVQTYVAYGTGKATGIVTNTR 58 (122)
Q Consensus 36 ~~til~e~Ak~~GkatGiVTT~~ 58 (122)
+..+| +..+++|+..||||+.+
T Consensus 47 v~e~L-~~Lk~~G~~l~I~TN~~ 68 (166)
T TIGR01664 47 IPAKL-QELDDEGYKIVIFTNQS 68 (166)
T ss_pred HHHHH-HHHHHCCCEEEEEeCCc
Confidence 45666 88899999999999854
No 17
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=27.41 E-value=75 Score=23.36 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=41.9
Q ss_pred cccccHHHHHHHHcCCcEEEEeeccCCCCCcccceeecCCCCCcCCCCCccccccChHHHHHHHhhc
Q psy17927 34 EKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVED 100 (122)
Q Consensus 34 ~~~~til~e~Ak~~GkatGiVTT~~vthATPAa~yAH~~~R~we~d~~~~~~~~~~~~dIA~Qlv~~ 100 (122)
..+..|+ +...++|..+--.-..++|...-..||++...+ .-+.++.+.|...
T Consensus 18 ~~~g~Il-~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k-------------~ff~~Lv~~m~sG 70 (139)
T PRK14545 18 GHIGGIL-DMITAAGFRIVAMKLTQLTVADAETFYAVHAER-------------PFYGELVEFMSRG 70 (139)
T ss_pred CcHHHHH-HHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCC-------------CchHHHHHHHhcC
Confidence 4567787 888899999888888899998889999988887 3566666666443
No 18
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=27.19 E-value=55 Score=23.96 Aligned_cols=23 Identities=26% Similarity=0.060 Sum_probs=18.9
Q ss_pred ccccHHHHHHHHcCCcEEEEeecc
Q psy17927 35 KVRRVQTYVAYGTGKATGIVTNTR 58 (122)
Q Consensus 35 ~~~til~e~Ak~~GkatGiVTT~~ 58 (122)
.+..++ +..+++|+..+|||+.+
T Consensus 30 gv~e~L-~~Lk~~G~~l~i~TN~~ 52 (176)
T TIGR00213 30 GVIDAL-RELKKMGYALVLVTNQS 52 (176)
T ss_pred CHHHHH-HHHHHCCCEEEEEeCCc
Confidence 345566 88899999999999886
No 19
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=27.09 E-value=57 Score=23.86 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=18.7
Q ss_pred ccccHHHHHHHHcCCcEEEEeeccC
Q psy17927 35 KVRRVQTYVAYGTGKATGIVTNTRV 59 (122)
Q Consensus 35 ~~~til~e~Ak~~GkatGiVTT~~v 59 (122)
.+..++ +.++++|+.++|+|++..
T Consensus 96 ~~~~~L-~~L~~~g~~~~i~Sn~~~ 119 (198)
T TIGR01428 96 DVPAGL-RALKERGYRLAILSNGSP 119 (198)
T ss_pred CHHHHH-HHHHHCCCeEEEEeCCCH
Confidence 344555 788899999999998764
No 20
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=26.73 E-value=22 Score=27.60 Aligned_cols=9 Identities=78% Similarity=0.940 Sum_probs=3.7
Q ss_pred CCccceeee
Q psy17927 1 MASFDIVSI 9 (122)
Q Consensus 1 ~~~~~~~~~ 9 (122)
|.|||++|=
T Consensus 1 mpSFDIVSe 9 (160)
T PF04461_consen 1 MPSFDIVSE 9 (160)
T ss_dssp --EEEEE--
T ss_pred CCCcceEEe
Confidence 667777763
No 21
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=26.24 E-value=59 Score=24.03 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=19.3
Q ss_pred cccHHHHHHHHcCCcEEEEeeccCCC
Q psy17927 36 VRRVQTYVAYGTGKATGIVTNTRVTH 61 (122)
Q Consensus 36 ~~til~e~Ak~~GkatGiVTT~~vth 61 (122)
+..+| +..++.|+.++|||+..-.+
T Consensus 99 ~~~~L-~~L~~~g~~~~i~Tn~~~~~ 123 (221)
T TIGR02253 99 VRDTL-MELRESGYRLGIITDGLPVK 123 (221)
T ss_pred HHHHH-HHHHHCCCEEEEEeCCchHH
Confidence 44555 78889999999999986443
No 22
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=24.78 E-value=65 Score=23.58 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=18.2
Q ss_pred cccHHHHHHHHcCCcEEEEeeccC
Q psy17927 36 VRRVQTYVAYGTGKATGIVTNTRV 59 (122)
Q Consensus 36 ~~til~e~Ak~~GkatGiVTT~~v 59 (122)
+..++ +..+++|..++|||+..-
T Consensus 90 ~~~~L-~~l~~~g~~~~i~S~~~~ 112 (213)
T TIGR01449 90 VEATL-GALRAKGLRLGLVTNKPT 112 (213)
T ss_pred HHHHH-HHHHHCCCeEEEEeCCCH
Confidence 44555 788899999999998753
No 23
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=24.37 E-value=1.1e+02 Score=25.59 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=27.6
Q ss_pred ccccCCeeEeecCCcccc-CCccccccHHHHHHHHcCCcEEEEeec
Q psy17927 13 HKLSTGSIAVFKPFLLMK-LDLEKVRRVQTYVAYGTGKATGIVTNT 57 (122)
Q Consensus 13 ~Kt~~g~I~v~p~~~~~~-~d~~~~~til~e~Ak~~GkatGiVTT~ 57 (122)
+|...-.|.|-| +.+. .-++|+---|+++.+++|+.+|||+-.
T Consensus 24 ~~~~vPVIsVGN--itvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 67 (311)
T TIGR00682 24 KRAPVPVVIVGN--LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRG 67 (311)
T ss_pred ccCCCCEEEEec--cccCCcChHHHHHHHHHHHHHCCCEEEEECCC
Confidence 444455677755 2111 124566555568999999999999854
No 24
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=23.53 E-value=49 Score=28.70 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=16.7
Q ss_pred cccHHHHHHHHcCCcEEEEee
Q psy17927 36 VRRVQTYVAYGTGKATGIVTN 56 (122)
Q Consensus 36 ~~til~e~Ak~~GkatGiVTT 56 (122)
..++. ++.+++|+.|+.|-.
T Consensus 81 ~~tl~-~~L~~aGY~T~~~GK 100 (500)
T TIGR03417 81 IPTYA-HYLRRAGYRTALSGK 100 (500)
T ss_pred CCCHH-HHHHHCCCeEEEecc
Confidence 45675 999999999999864
No 25
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=23.05 E-value=39 Score=26.25 Aligned_cols=9 Identities=78% Similarity=0.940 Sum_probs=6.7
Q ss_pred CCccceeee
Q psy17927 1 MASFDIVSI 9 (122)
Q Consensus 1 ~~~~~~~~~ 9 (122)
|.|||++|=
T Consensus 1 mpSFDIVSe 9 (161)
T PRK05412 1 MPSFDIVSE 9 (161)
T ss_pred CCCcceeee
Confidence 678888874
No 26
>KOG3867|consensus
Probab=22.26 E-value=69 Score=29.06 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=19.3
Q ss_pred ccHHHHHHHHcCCcEEEEeeccCC
Q psy17927 37 RRVQTYVAYGTGKATGIVTNTRVT 60 (122)
Q Consensus 37 ~til~e~Ak~~GkatGiVTT~~vt 60 (122)
++.++|..|++|++||+|-.=-+-
T Consensus 117 E~tlae~l~~~GY~T~liGKWHLG 140 (528)
T KOG3867|consen 117 ETTLAEILQEAGYSTGLIGKWHLG 140 (528)
T ss_pred hhHHHHHHHhCCccccccccccCC
Confidence 343469999999999999877666
No 27
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=22.15 E-value=76 Score=22.05 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=18.9
Q ss_pred cccHHHHHHHHcCCcEEEEeeccCC
Q psy17927 36 VRRVQTYVAYGTGKATGIVTNTRVT 60 (122)
Q Consensus 36 ~~til~e~Ak~~GkatGiVTT~~vt 60 (122)
+..++ +..+++|+..+|||+..-.
T Consensus 69 ~~e~l-~~L~~~g~~~~i~T~~~~~ 92 (154)
T TIGR01549 69 AADLL-KRLKEAGIKLGIISNGSLR 92 (154)
T ss_pred HHHHH-HHHHHCcCeEEEEeCCchH
Confidence 55666 7778899999999988733
No 28
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=22.14 E-value=1.3e+02 Score=25.51 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=27.7
Q ss_pred ccccCCeeEeecCCcccc-CCccccccHHHHHHHHcCCcEEEEeecc
Q psy17927 13 HKLSTGSIAVFKPFLLMK-LDLEKVRRVQTYVAYGTGKATGIVTNTR 58 (122)
Q Consensus 13 ~Kt~~g~I~v~p~~~~~~-~d~~~~~til~e~Ak~~GkatGiVTT~~ 58 (122)
+|...-.|.|-| +.+. .-++|+---|+++.+++|+.+|||+-.-
T Consensus 52 ~~~pvPVIsVGN--itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 96 (338)
T PRK01906 52 VRLGVPVVVVGN--VTVGGTGKTPTVIALVDALRAAGFTPGVVSRGY 96 (338)
T ss_pred ccCCCCEEEECC--ccCCCCChHHHHHHHHHHHHHcCCceEEEecCC
Confidence 444455677755 2111 1244555555688999999999998553
No 29
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=22.13 E-value=72 Score=22.41 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=18.6
Q ss_pred ccccHHHHHHHHcCCcEEEEeec
Q psy17927 35 KVRRVQTYVAYGTGKATGIVTNT 57 (122)
Q Consensus 35 ~~~til~e~Ak~~GkatGiVTT~ 57 (122)
.+..++ +.++++|...+|+|+.
T Consensus 33 gv~e~L-~~Lk~~g~~l~i~Sn~ 54 (128)
T TIGR01681 33 EIRDKL-QTLKKNGFLLALASYN 54 (128)
T ss_pred HHHHHH-HHHHHCCeEEEEEeCC
Confidence 455666 8889999999999998
No 30
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=21.81 E-value=73 Score=23.56 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=19.8
Q ss_pred ccccHHHHHHHHcCCcEEEEeeccCCC
Q psy17927 35 KVRRVQTYVAYGTGKATGIVTNTRVTH 61 (122)
Q Consensus 35 ~~~til~e~Ak~~GkatGiVTT~~vth 61 (122)
.+..++ +..+++|+.++|+|++.-.+
T Consensus 88 g~~e~L-~~l~~~g~~~~i~Sn~~~~~ 113 (199)
T PRK09456 88 EVIAIM-HKLREQGHRVVVLSNTNRLH 113 (199)
T ss_pred HHHHHH-HHHHhCCCcEEEEcCCchhh
Confidence 344555 88889999999999986443
No 31
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=21.73 E-value=1.3e+02 Score=25.19 Aligned_cols=44 Identities=14% Similarity=0.063 Sum_probs=27.8
Q ss_pred cccccCCeeEeecCCcccc-CCccccccHHHHHHHHcCCcEEEEeec
Q psy17927 12 EHKLSTGSIAVFKPFLLMK-LDLEKVRRVQTYVAYGTGKATGIVTNT 57 (122)
Q Consensus 12 G~Kt~~g~I~v~p~~~~~~-~d~~~~~til~e~Ak~~GkatGiVTT~ 57 (122)
-.|...-.|+|-| +.+. .-++|+---|+++.+++|+.+|||+-.
T Consensus 30 ~~~~~vpVIsVGN--ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRG 74 (326)
T PF02606_consen 30 SYRLPVPVISVGN--LTVGGTGKTPLVIWLARLLQARGYRPAILSRG 74 (326)
T ss_pred cCCCCCcEEEEcc--cccCCCCchHHHHHHHHHHHhcCCceEEEcCC
Confidence 3444555677755 1111 124555555568999999999999864
No 32
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=21.72 E-value=80 Score=23.42 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=17.7
Q ss_pred ccHHHHHHHHcCCcEEEEeeccC
Q psy17927 37 RRVQTYVAYGTGKATGIVTNTRV 59 (122)
Q Consensus 37 ~til~e~Ak~~GkatGiVTT~~v 59 (122)
..++ ++.+++|...||||+..-
T Consensus 93 ~~~L-~~L~~~g~~~~ivT~~~~ 114 (220)
T TIGR03351 93 EEAF-RSLRSSGIKVALTTGFDR 114 (220)
T ss_pred HHHH-HHHHHCCCEEEEEeCCch
Confidence 4455 788889999999998764
No 33
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=21.52 E-value=85 Score=22.31 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=18.3
Q ss_pred cccHHHHHHHHcCCcEEEEeecc
Q psy17927 36 VRRVQTYVAYGTGKATGIVTNTR 58 (122)
Q Consensus 36 ~~til~e~Ak~~GkatGiVTT~~ 58 (122)
+..++ +..+++|+.++|+|+.+
T Consensus 32 ~~~~l-~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 32 AVPAL-LTLRAAGYTVVVVTNQS 53 (147)
T ss_pred hHHHH-HHHHHCCCEEEEEeCCC
Confidence 34566 88999999999999875
No 34
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=20.94 E-value=80 Score=24.50 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=18.2
Q ss_pred cccHHHHHHHHcCCcEEEEeecc
Q psy17927 36 VRRVQTYVAYGTGKATGIVTNTR 58 (122)
Q Consensus 36 ~~til~e~Ak~~GkatGiVTT~~ 58 (122)
+..+| ++.+++|...||||+.+
T Consensus 113 v~e~L-~~L~~~g~~l~I~Tn~~ 134 (248)
T PLN02770 113 LYKLK-KWIEDRGLKRAAVTNAP 134 (248)
T ss_pred HHHHH-HHHHHcCCeEEEEeCCC
Confidence 45555 78889999999999986
No 35
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=20.73 E-value=86 Score=23.16 Aligned_cols=23 Identities=17% Similarity=0.042 Sum_probs=17.7
Q ss_pred cccHHHHHHHHcCCcEEEEeeccC
Q psy17927 36 VRRVQTYVAYGTGKATGIVTNTRV 59 (122)
Q Consensus 36 ~~til~e~Ak~~GkatGiVTT~~v 59 (122)
+..++ +..+++|+.++|+|+..-
T Consensus 99 ~~~~L-~~L~~~g~~l~i~Sn~~~ 121 (211)
T TIGR02247 99 MMAAI-KTLRAKGFKTACITNNFP 121 (211)
T ss_pred HHHHH-HHHHHCCCeEEEEeCCCC
Confidence 34455 778889999999998753
Done!