RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17927
(122 letters)
>1k7h_A Alkaline phosphatase; hydrolase, transferase, phosphomonoester,
extended beta SHEE triad, metal triad; HET: NAG; 1.92A
{Pandalus borealis} SCOP: c.76.1.1 PDB: 1shq_A* 1shn_A*
Length = 476
Score = 97.2 bits (242), Expect = 5e-25
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 48 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPV--ISRKSCKDLARQLVEDYPGKD 105
G++TG+VT+TRVTHATPA Y H R WE+D V + C D+A QLV PGK+
Sbjct: 136 GRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEICDDIAEQLVFREPGKN 195
Query: 106 INL 108
+
Sbjct: 196 FKV 198
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET:
NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB:
1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A*
Length = 484
Score = 90.3 bits (224), Expect = 1e-22
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 13 HKLSTGSIAVFKPFLLMKLDLEKVRRVQTYV--AYGTGKATGIVTNTRVTHATPAAFYGH 70
K + +I + + + + V + + A GK+ G+VT TRV HA+PA Y H
Sbjct: 103 VKGNFQTIGLSAAARFNQCNTTRGNEVISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAH 162
Query: 71 SPSRYWEDDGKVPVISRKS-CKDLARQLVED 100
+ +R W D VP +R+ C+D+A QL+ +
Sbjct: 163 TVNRNWYSDADVPASARQEGCQDIATQLISN 193
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli}
PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B
1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A*
1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Length = 449
Score = 84.1 bits (208), Expect = 2e-20
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 48 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVP--VISRKSCKDLARQLVEDYPGKD 105
G ATG V+ + ATPAA H SR K + E
Sbjct: 140 GLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNAR 199
Query: 106 INL 108
++
Sbjct: 200 ADV 202
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase;
HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A*
2w5x_A* 2iuc_A 2iuc_B
Length = 375
Score = 75.8 bits (187), Expect = 1e-17
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 13/53 (24%)
Query: 48 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVED 100
TG+V + +T ATPA+FY H+ +R E+ ++A + E
Sbjct: 122 NIKTGVVATSSITDATPASFYAHALNRGLEE-------------EIAMDMTES 161
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 75.7 bits (186), Expect = 2e-17
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 13/53 (24%)
Query: 48 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVED 100
GKATG+V++TR+THATPA+F H P R E+ +A ++
Sbjct: 103 GKATGLVSDTRLTHATPASFAAHQPHRSLEN-------------QIASDMLAT 142
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A
{Halobacterium salinarum R1} PDB: 2x98_A
Length = 473
Score = 75.6 bits (186), Expect = 2e-17
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 13/53 (24%)
Query: 48 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVED 100
G ATG++T T THATPAAF H R + ++ARQ +E+
Sbjct: 157 GYATGLITTTEATHATPAAFAAHVEDRGNQT-------------EIARQYIEE 196
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Length = 400
Score = 74.7 bits (184), Expect = 3e-17
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 13/53 (24%)
Query: 48 GKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSCKDLARQLVED 100
G +TG+ +V HATPAAF H+ SR + +A +++
Sbjct: 96 GMSTGVAVTAQVNHATPAAFLTHNESRKNYE-------------AIAADMLKS 135
>2jbh_A Phosphoribosyltransferase domain-containing prote;
glycosyltransferase, purine salvage; HET: 5GP; 1.7A
{Homo sapiens}
Length = 225
Score = 28.2 bits (63), Expect = 0.49
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 72 PSRYWEDDGKVPVISRKS----CKDLARQLVEDYPGKDINL 108
P Y+ D V +I + LA+ +++D DI +
Sbjct: 32 PQHYYGDLEYV-LIPHGIIVDRIERLAKDIMKDIGYSDIMV 71
>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A
{Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A*
1qk5_A* 1dbr_A
Length = 233
Score = 28.0 bits (63), Expect = 0.58
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 72 PSRYWEDDGKVPVISRKS----CKDLARQLVEDYPGKDI 106
P K+ ++ + LA + Y G+++
Sbjct: 38 PPHCKPYIDKI-LLPGGLVKDRVEKLAYDIHRTYFGEEL 75
>3ozf_A Hypoxanthine-guanine-xanthine phosphoribosyltrans;
transferase-transferase inhibitor complex; HET: HPA;
1.94A {Plasmodium falciparum fcr-3} PDB: 3ozg_A* 1cjb_A*
Length = 250
Score = 27.6 bits (62), Expect = 0.86
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 72 PSRYWEDDGKVPVISRKS----CKDLARQLVEDYPGKDINL 108
P+ Y + KV ++ + LA + + Y ++ ++
Sbjct: 52 PAHYKKYLTKV-LVPNGVIKNRIEKLAYDIKKVYNNEEFHI 91
>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
flexibility, trans CIS peptide bond isomerization,
nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1
PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A*
2vfa_A*
Length = 217
Score = 27.5 bits (62), Expect = 0.93
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 72 PSRYWEDDGKVPVISRKS----CKDLARQLVEDYPGKDINL 108
P+ Y ED +V I + LAR ++++ G I
Sbjct: 24 PNHYAEDLERV-FIPHGLIMDRTERLARDVMKEMGGHHIVA 63
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.2
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 10 KQEHKLSTGSIAVFK----PFLLMKLDLE 34
KQ K S+ ++ P L +K +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.3 bits (60), Expect = 1.2
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 71 SPSRYWEDDG-KVPVISRKS----CKDLARQLVEDY 101
+ + G + P ++ CK ++VE +
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERF 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 1.7
Identities = 14/97 (14%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 24 KPFLLMKLDLEKVRRVQTYVAY---GTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDG 80
+P+L ++ L ++R + + G+GK T + + +++ +W
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVCLSYKVQCKMDFKI---FW---- 186
Query: 81 KVPVISRKSCKDLARQLVEDYPGKDINLKPLQSNNNN 117
+ + + S + + L + D N +++N
Sbjct: 187 -LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 26.4 bits (59), Expect = 3.2
Identities = 6/17 (35%), Positives = 8/17 (47%), Gaps = 2/17 (11%)
Query: 41 TYVAYGTGKATGIVTNT 57
T GT + G+V T
Sbjct: 252 TNCVEGTAR--GVVVYT 266
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 26.1 bits (58), Expect = 3.5
Identities = 7/17 (41%), Positives = 8/17 (47%), Gaps = 2/17 (11%)
Query: 41 TYVAYGTGKATGIVTNT 57
T +A G GIV T
Sbjct: 213 TNIAAGKAL--GIVATT 227
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 26.1 bits (58), Expect = 3.9
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 2/17 (11%)
Query: 41 TYVAYGTGKATGIVTNT 57
T GT + G+V NT
Sbjct: 257 TMCLEGTAQ--GLVVNT 271
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural
GENO protein structure initiative, midwest center for
structural genomics; HET: MLY MSE MLZ ADP; 1.66A
{Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Length = 302
Score = 26.1 bits (57), Expect = 3.9
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 42 YVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDG 80
Y+ GTG G + R+ GH R DD
Sbjct: 128 YITIGTGIGAGAIVEGRLLQGLSHPEMGHIYIRRHPDDV 166
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 25.7 bits (56), Expect = 4.4
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 84 VISRKSCKDLARQLVEDYPGKDINLKPLQSNNNNNNNIY 122
+ R+ L+ L E++ ++ + L + I+
Sbjct: 71 ALGRELMLQLSEFLCEEFRNRNQRIVQLI----QDTRIH 105
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold,
structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus
thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A*
3acd_A*
Length = 181
Score = 25.1 bits (56), Expect = 5.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 87 RKSCKDLARQLVEDYPGKDI 106
+K ++L ++ DY GK
Sbjct: 20 KKRVEELGGEIARDYQGKTP 39
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein
structure in midwest center for structural genomics,
MCSG; 2.01A {Staphylococcus epidermidis}
Length = 249
Score = 25.5 bits (55), Expect = 5.3
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 75 YWEDDGKVPVISRKSCKDLARQLVEDYPGKDINLKPLQ 112
DG+V S +S + L R + Y Q
Sbjct: 192 GSHSDGRVSNSSSQSLQYLLRGSTKSYQEMKFKGAKAQ 229
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant,
inhibitor design, selectivity; 1.70A {Thermoanaerobacter
tengcongensis}
Length = 185
Score = 25.1 bits (56), Expect = 5.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 87 RKSCKDLARQLVEDYPGKDI 106
+ K+L + DY GKD+
Sbjct: 23 KAKVKELGEMITRDYEGKDL 42
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide
complex; HET: IMP; 2.20A {Thermoanaerobacter
tengcongensis} SCOP: c.61.1.1 PDB: 1r3u_A*
Length = 205
Score = 25.2 bits (56), Expect = 5.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 87 RKSCKDLARQLVEDYPGKDI 106
+ K+L + DY GKD+
Sbjct: 43 KAKVKELGEMITRDYEGKDL 62
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase;
glycosyltransferase, purine salvage, transferase
(glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas
foetus} SCOP: c.61.1.1
Length = 183
Score = 25.1 bits (56), Expect = 6.0
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 77 EDDGKVPVISRKS----CKDLARQLVEDYPGKDI 106
DD + + ++ ++LA +L E Y K+
Sbjct: 7 MDDLERVLYNQDDIQKRIRELAAELTEFYEDKNP 40
>3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine
phosphoribosyltransferase, salvage of nucleosides and
nucleotides; HET: GOL; 1.98A {Bacillus anthracis}
Length = 186
Score = 25.1 bits (56), Expect = 6.2
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 77 EDDGKVPVISRKS----CKDLARQLVEDYPGKDI 106
+ K +IS + K+LA Q+ D+ G++I
Sbjct: 5 NIEIKDTLISEEQLQEKVKELALQIERDFEGEEI 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 6.6
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 29/57 (50%)
Query: 15 LSTGSIAVFKPFLLMKLDLEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHS 71
L+ A F+ DL K+ G++ A F GHS
Sbjct: 1736 LTLMEKAAFE-------DL---------------KSKGLIP-------ADATFAGHS 1763
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine
phosphoribosyltransferase, 2-(N-morphol ethanesulfonic
acid (MES), IDP01892; HET: MES; 1.95A {Bacillus
anthracis str} PDB: 3h83_A* 3kb8_A*
Length = 204
Score = 25.2 bits (56), Expect = 6.7
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 77 EDDGKVPVISRKS----CKDLARQLVEDYPGKDI 106
D + +IS + +L + EDY
Sbjct: 27 NQDIEKVLISEEQIQEKVLELGAIIAEDYKNTVP 60
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family,
transcription, DNA- binding, transcription regulation;
2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Length = 152
Score = 24.8 bits (55), Expect = 7.4
Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 14 KLSTGSIAVFKPFLLMKLD-LEKVRRVQTYVAYGTGKATGIV 54
K+ SI + L+ K+ +++++ +T + I
Sbjct: 110 KVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTIK 151
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP;
2.10A {Leishmania tarentolae} SCOP: c.61.1.1
Length = 211
Score = 24.9 bits (55), Expect = 8.7
Identities = 6/52 (11%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 62 ATPAAFYGHSPSRYWEDDGKVPVISRKS----CKDLARQLVEDYPGKDINLK 109
+P+ G R + + +++++ A+++ DY +
Sbjct: 6 KSPSDHVGDVGRRNYPMSART-LVTQEQVWAATAKCAKKIAADYKDFHLTAD 56
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.2 bits (55), Expect = 8.7
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 48 GKATGIVTNTRVTHATPAAFY 68
G A +VT +R + +Y
Sbjct: 500 GGAKVVVTTSRFSKQV-TDYY 519
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage
enzym; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB:
1a96_A* 1a95_A 1a98_A 1a97_A*
Length = 152
Score = 24.7 bits (54), Expect = 9.3
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 88 KSCKDLARQLVEDYPGKDI 106
+ LA +L+ K I
Sbjct: 14 IHARKLASRLMPSEQWKGI 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.386
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,852,083
Number of extensions: 100806
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 36
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)