RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17927
(122 letters)
>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
(Pandalus borealis) [TaxId: 6703]}
Length = 476
Score = 63.7 bits (154), Expect = 1e-13
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 31 LDLEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVP--VISRK 88
LD + G++TG+VT+TRVTHATPA Y H R WE+D V +
Sbjct: 119 LDESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPE 178
Query: 89 SCKDLARQLVEDYPGKDINL 108
C D+A QLV PGK+ +
Sbjct: 179 ICDDIAEQLVFREPGKNFKV 198
>d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 479
Score = 55.9 bits (134), Expect = 7e-11
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 13 HKLSTGSIAVFKPFLLMKLDLEKVRRVQTYV--AYGTGKATGIVTNTRVTHATPAAFYGH 70
K + +I + + + + V + + A GK+ G+VT TRV HA+PA Y H
Sbjct: 103 VKGNFQTIGLSAAARFNQCNTTRGNEVISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAH 162
Query: 71 SPSRYWEDDGKVPVISRKS-CKDLARQLVEDYPGK 104
+ +R W D VP +R+ C+D+A QL+ +
Sbjct: 163 TVNRNWYSDADVPASARQEGCQDIATQLISNMDID 197
>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
[TaxId: 562]}
Length = 449
Score = 53.2 bits (127), Expect = 5e-10
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 44 AYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVP------VISRKSCKDLARQL 97
A G ATG V+ + ATPAA H SR + + + QL
Sbjct: 136 AKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQL 195
Query: 98 VEDYPGKDIN 107
+ +
Sbjct: 196 LNARADVTLG 205
>d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR
{Bacillus subtilis [TaxId: 1423]}
Length = 176
Score = 31.7 bits (71), Expect = 0.013
Identities = 11/49 (22%), Positives = 14/49 (28%)
Query: 42 YVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVISRKSC 90
Y+ GTG G + R+ GH R DD
Sbjct: 7 YITIGTGIGAGAIVEGRLLQGLSHPEMGHIYIRRHPDDVYQGKCPYHGD 55
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase)
{Plasmodium falciparum [TaxId: 5833]}
Length = 228
Score = 26.8 bits (59), Expect = 0.71
Identities = 7/41 (17%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 72 PSRYWEDDGKVPVIS----RKSCKDLARQLVEDYPGKDINL 108
P+ Y + KV ++ + + LA + + Y ++ ++
Sbjct: 32 PAHYKKYLTKV-LVPNGVIKNRIEKLAYDIKKVYNNEEFHI 71
>d1fsga_ c.61.1.1 (A:) Hypoxanthine-guanine-xanthine PRTase
{Toxoplasma gondii [TaxId: 5811]}
Length = 233
Score = 26.1 bits (57), Expect = 1.1
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 72 PSRYWEDDGKVPVIS----RKSCKDLARQLVEDYPGKDINL 108
P K+ ++ + + LA + Y G+++++
Sbjct: 38 PPHCKPYIDKI-LLPGGLVKDRVEKLAYDIHRTYFGEELHI 77
>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase
{Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 24.7 bits (53), Expect = 2.8
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 42 YVAYGTGKATGIVTNTRVTHAT--PAAFYGHSPSRYWED 78
++ G G GI+ + + A G++ +
Sbjct: 6 WILTGKGIGAGIIIDGELYRGENGYAGEIGYTRVFNGNE 44
>d1z7ga1 c.61.1.1 (A:4-217) Hypoxanthine-guanine PRTase (HGPRTase)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 214
Score = 25.0 bits (54), Expect = 3.2
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 72 PSRYWEDDGKVPVIS----RKSCKDLARQLVEDYPGKDI 106
P+ Y ED +V I + LAR ++++ G I
Sbjct: 21 PNHYAEDLERV-FIPHGLIMDRTERLARDVMKEMGGHHI 58
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon
Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Length = 153
Score = 24.6 bits (53), Expect = 3.5
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 27 LLMKLDLEKVRRVQTYVAYGTGKATGIVTNTRVTHATPAAFYGHSPSRYWEDDGKVPVIS 86
L K + VRRV+ KATG T V TP G++ +I
Sbjct: 88 YLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDL-GYAEVVEERKLAGENMIF 146
Query: 87 RKSCKD 92
+ CK+
Sbjct: 147 VEGCKN 152
>d1hgxa_ c.61.1.1 (A:) Hypoxanthine-guanine-xanthine PRTase
{Tritrichomonas foetus [TaxId: 5724]}
Length = 173
Score = 23.8 bits (51), Expect = 5.5
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 87 RKSCKDLARQLVEDYPGKDINL 108
+K ++LA +L E Y K+ +
Sbjct: 15 QKRIRELAAELTEFYEDKNPVM 36
>d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 23.9 bits (51), Expect = 5.6
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 87 RKSCKDLARQLVEDYPGKDI 106
+ + LA +L+ K I
Sbjct: 11 QIHARKLASRLMPSEQWKGI 30
>d1yfza1 c.61.1.1 (A:3-180) Xanthine-guanine PRTase (XPRTase)
{Thermoanaerobacter tengcongensis [TaxId: 119072]}
Length = 178
Score = 23.8 bits (51), Expect = 6.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 87 RKSCKDLARQLVEDYPGKDI 106
+ K+L + DY GKD+
Sbjct: 17 KAKVKELGEMITRDYEGKDL 36
>d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId:
42739]}
Length = 319
Score = 24.0 bits (51), Expect = 7.1
Identities = 6/30 (20%), Positives = 8/30 (26%), Gaps = 1/30 (3%)
Query: 60 THATPAAFYGHSPSRYWED-DGKVPVISRK 88
+ A +R DG V S
Sbjct: 243 STLALLATGAVMINRASGQNDGLVSRCSSL 272
>d1tc1a_ c.61.1.1 (A:) Hypoxanthine PRTase {Trypanosoma cruzi
[TaxId: 5693]}
Length = 184
Score = 23.4 bits (50), Expect = 8.3
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 87 RKSCKDLARQLVEDYPGKDINLK 109
R K++A+++ +DY GK +
Sbjct: 15 RTRIKEVAKRIADDYKGKGLRPY 37
>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
catalytic domain {Helicobacter pylori [TaxId: 210]}
Length = 389
Score = 23.5 bits (51), Expect = 9.7
Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 39 VQTYVAYGTGKATGIVTNTRVTHATPAAFY 68
V T + GTG A G T T TP
Sbjct: 22 VTTMIGGGTGPADG----TNATTITPGRRN 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.386
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 450,275
Number of extensions: 18907
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 22
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)