BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1793
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQ 66
+ C C K FH+ +D+K+H+ HTG KP+ CQ
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQ 66
F C +C K F R++ L H + H+ +PY CQ
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQ 33
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 36 QCSVCAKYFHRAADLKRHSICHTGLKPYACQDVE 69
+C VC K F R LK H CHTG+KPY C+ +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCD 43
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGEIGIAENRH 91
FQC C + F R+ LK H+ HTG KP++C R P ++ E+ N H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC----RWPSCQKKFARSDELVRHHNMH 119
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 35 FQCSV--CAKYFHRAADLKRHSICHTGLKPYACQDVER 70
+QC C + F R+ LKRH HTG+KP+ C+ +R
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQR 74
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 35 FQCSV--CAKYFHRAADLKRHSICHTGLKPYAC--QDVERSPPVMLMVVKTGEIGIAENR 90
F C+ C K + + + L+ HS HTG KPY C +D ER ++ ++ + R
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCER------RFSRSDQLKRHQRR 60
Query: 91 HKTVENHQ 98
H V+ Q
Sbjct: 61 HTGVKPFQ 68
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQD-----VERSPPVMLMVVKTG 82
++C C K F ++DL +H HTG KPY C + ++RS + V TG
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
++C C K F +++DL++H HTG KPY C + +S
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKS 69
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
++C C K F ++++L++H HTG KPY C + +S
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKS 41
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
++C C K F + A+L+ H HTG KPYAC + +S
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKS 114
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
++C C K F DL RH HTG KPY C + +S
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS 86
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
++C C K F R +L H HTG KPY C + +S
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKS 170
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
+ C C K F R+ L H HTG KPY C + +S
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKS 58
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
+ C C K F + A L+ H HTG KPY C + +S
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKS 142
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
FQC +C + F R+ L H HTG KP+AC
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 34
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVER 70
F CSVC + F R +L+ H + HTG PY C +
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQ 102
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 36 QCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+C C K F LK H+ HTG KP+ C
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFEC 38
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
FQC +C + F + A L H HTG KP+AC
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFAC 65
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
FQC +C + F R+ L H HTG KP+AC
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 35 FQCSV--CAKYFHRAADLKRHSICHTGLKPYACQ 66
+ C V C + F +++L RH HTG KP+ C+
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCR 38
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
FQC +C + F R+ L H HTG KP+AC
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 35 FQCSV--CAKYFHRAADLKRHSICHTGLKPYACQ 66
+ C V C + F R+ +L RH HTG KP+ C+
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR 38
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
FQC +C + F R+ L H HTG KP+AC
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 35 FQCSV--CAKYFHRAADLKRHSICHTGLKPYACQ 66
+ C V C + F ++ L RH HTG KP+ C+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCR 38
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
FQC +C + F R+ L H HTG KP+AC
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 35 FQCSV--CAKYFHRAADLKRHSICHTGLKPYACQ 66
+ C V C + F R+A+L RH HTG KP+ C+
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCR 38
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
FQC +C + F R+ L H HTG KP+AC
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 35 FQCSV--CAKYFHRAADLKRHSICHTGLKPYACQ 66
+ C V C + F R+ADL RH HTG KP+ C+
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCR 38
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
FQC +C + F R+ L H HTG KP+AC
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 64
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 35 FQCSV--CAKYFHRAADLKRHSICHTGLKPYACQ 66
+ C V C + F R+ +L RH HTG KP+ C+
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR 37
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
FQC +C + F R+ L H HTG KP+AC
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 35 FQCSV--CAKYFHRAADLKRHSICHTGLKPYACQ 66
+ C V C + F R+ +L RH HTG KP+ C+
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR 38
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE 83
F C VC + F R LKRH HT KPY C R+ ++++ +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
FQC +C + F + L +H HTG KP+AC
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFAC 65
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 37 CSVCAKYFHRAADLKRHSICHTGLKPYAC 65
C+ C K F ++ LKRH + HTG KP+ C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Score = 28.9 bits (63), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 35 FQCSV--CAKYFHRAADLKRHSICHTGLKPYAC 65
FQC+ C K F +L+ H HTG +PY C
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 37 CSVCAKYFHRAADLKRHSICHTGLKPYAC 65
C +C K F L RH + H+G KPY+C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSC 38
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 32.7 bits (73), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C++C F+R A+LK H+ H+G KP
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQ 66
++C C F +L H HTG KPY C
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCN 49
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++CS C K FHR L H HTG +P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C C K F R + L RH + HTG KP
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 32.3 bits (72), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+ C C K F R++ L +H HTG KPY C
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKC 45
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 32.3 bits (72), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 37 CSVCAKYFHRAADLKRHSICHTGLKPYA 64
C +C K F L RH + H+G KPY+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
+QC+ C K F + + L RH HTG KP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 36 QCSVCAKYFHRAADLKRHSICHTGLKPYACQDVE 69
+CS C K+F L H HTG KPY C+ E
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCE 39
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 40 CAKYFHRAADLKRHSICHTGLKPYACQ 66
C K F R+ +LK H HTG KP+ C+
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCE 124
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
F+C +C K F + L RHS+ HT KP
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C VC+K F + A L +H HTG KP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C+ C K F R + L +H HTG KP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 35 FQCSV--CAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
+ C V C + F R+ +L RH HTG KP+ C+ R+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQ 66
+ C VC K F L H HTG+KPY C
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 40 CAKYFHRAADLKRHSICHTGLKPYAC 65
C K F + RH H GL+PY C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGC 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++CS+C K F + + L H HTG KP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C+ C K F + + L RH HTG KP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDV 68
+ C +C K F R L+ H H+ KP+ CQ+
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
F C C ++F ++ +L H HT +PY C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTC 48
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
F+C C K F + + L H + HTG KP
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C VC K F +++ L+ H HTG KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
F C+ C K + A+ L RH H G +P +C
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSC 35
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
F+C+ C K F R + L H HTG KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C C K F + A+L +H HTG KP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
+ C C K F +A+L RH HTG KP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
F+C+ C K F +A L +H + H G P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 29.6 bits (65), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 40 CAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
C F R+ +L RH HTG +P+ CQ +R+
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRA 75
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 40 CAKYFHRAADLKRHSICHTGLKPYAC 65
C K + +++ LK H HTG KPY C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHC 39
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 40 CAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
C F R+ +L RH HTG +P+ CQ +R+
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRA 74
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 40 CAKYFHRAADLKRHSICHTGLKPYAC 65
C K + +++ LK H HTG KPY C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHC 38
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLK 61
FQC C + F R+ LK H+ HTG K
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 36 QCSVCAKYFHRAADLKRHSICHTGLKP 62
+CS C K+F +A++ +H HTG KP
Sbjct: 14 RCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
F+CS C K F+ ++L H HTG KP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C+ C K F ++L H + HTG KP
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C+ C K F + + L RH HTG KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
FQC C K F + + L H HTG KP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 40 CAKYFHRAADLKRHSICHTGLKPYACQ 66
C K + +++ LK H+ HTG KP++C
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCS 51
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C+ C K F + + L RH HTG KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C+ C K F + L RH HTG KP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++CS C K F R + L H HTG KP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C+ C K F + + L RH HTG KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 28.9 bits (63), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 40 CAKYFHRAADLKRHSICHTGLKPYACQ 66
C K + R +LK H HTG KPY C+
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCE 101
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C+ C K F + + L H HTG+KP
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C VC K F A L +H H+G KP
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
F+C+ C K F ++ L H HTG KP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C+ C K F + + L RH HTG KP
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
+QCS C K F + L +H I HT KP
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 21/86 (24%)
Query: 42 KYFHRAADLKRHSIC-HTGLKPYACQDVERSPP-------------------VMLMVVKT 81
KYF +A DLK +S C + G+ Y Q VE++ ++ + +
Sbjct: 27 KYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYS 86
Query: 82 GEIGIAENRHKTVENHQKAVKIPPTE 107
G+ G+++N +K ++ + KA + E
Sbjct: 87 GQ-GVSQNTNKALQYYSKACDLKYAE 111
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
+ C+VC K F ++L +H HTG KP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 35 FQCSV--CAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
++C+ C F R+ +L RH HTG KP+ C RS
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRS 84
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 40 CAKYFHRAADLKRHSICHTGLKPYAC 65
C K + +++ LK H HTG KPY C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKC 48
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++CSVC K F L H H+G KP
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
+ CS CAK F + L H HTG+KP
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
F+C C K F + + L H HTG KP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
F+C+ C K F +++ L H HTG KP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
+ C+ C K F + L H + HTG KP
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
F+C C K +++ L +H HTG KP
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
F+C C K F R + L H HTG KP
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C VC K F + L H HTG KP
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 35 FQCSV--CAKYFHRAADLKRHSICHTGLKP 62
F C+ C F R+ +L RH H+G+KP
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
+ C+ C K F + + L RH HTG KP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
+ C C K F RA L +H H+G KP
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C+ C K F + L H HTG KP
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C+ C K F + + L H HTG KP
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTG 59
++CS C K F + L+ H CHTG
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTG 37
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 35 FQC--SVCAKYFHRAADLKRHSICHTGLK 61
F C S C K F R+ +L+RH HTG K
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C C K F + L +H HTG KP
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLK 61
F C VC + F R LKRH HT K
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C VC K F ++ L +H H+G +P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|1ZR9|A Chain A, Solution Structure Of A Human C2h2-Type Zinc Finger
Protein
Length = 124
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 15/58 (25%)
Query: 36 QCSVCAKYFHRAADLKRH--------SICHTGLKPYACQDVERS-------PPVMLMV 78
+C CA+YF + +LK H + ++PY+ ++ ER+ PP L V
Sbjct: 52 RCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPRRLAV 109
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 26.6 bits (57), Expect = 4.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLK 61
F C VC + F R LKRH HT K
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 26.6 bits (57), Expect = 4.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 50 LKRHSICHTGLKPYACQDVERSPPVMLMVVKTGEIGIAENRHKTVENHQKAVKIPP 105
L +H+I H LKP + ++ +V G + EN+ K E A I P
Sbjct: 152 LHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAP 207
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
+ C C K F + L+ H HTG KP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLK 61
F C VC + F R LKRH HT K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 36 QCSVCAKYFHRAADLKRHSICHTGLKP 62
+C+ C K F ++A L +H HTG KP
Sbjct: 14 KCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C C F + A L+ H + HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLK 61
++C C K F ++L H + HTG K
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
+ C+ C K F + + L H HTG KP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++CS C K F + + L H HTG P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C+ C K F ++L H HTG KP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
+ C C K F A+ L +H H+G KP
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
F CS C K F +L H HTG +P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
F+C C K F + L H HTG KP
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 25.8 bits (55), Expect = 8.3, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
+ C+ C K F + L H HTG+KP
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C C K F DL H + HTG KP
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 25.8 bits (55), Expect = 8.7, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
+QC C K F + L H HTG P
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
++C+ C K F + L H H+G KP
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 37 CSVCAKYFHRAADLKRHSICHTGLKP 62
C+ C K F +++ L +H H+G KP
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLK 61
+C C K F + +LKRH H+G K
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,329,179
Number of Sequences: 62578
Number of extensions: 102527
Number of successful extensions: 428
Number of sequences better than 100.0: 132
Number of HSP's better than 100.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 195
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)