Query psy1793
Match_columns 135
No_of_seqs 175 out of 2115
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 17:46:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462|consensus 99.8 7.8E-20 1.7E-24 129.3 3.7 114 18-133 142-270 (279)
2 KOG2462|consensus 99.8 1.3E-19 2.9E-24 128.1 2.0 80 19-100 174-265 (279)
3 KOG3623|consensus 99.5 1.5E-14 3.2E-19 113.7 3.0 75 9-83 896-971 (1007)
4 KOG3576|consensus 99.4 1.4E-13 3E-18 94.1 2.6 66 18-83 129-194 (267)
5 KOG3623|consensus 99.2 2.8E-12 6E-17 101.2 1.0 70 31-100 891-972 (1007)
6 KOG3608|consensus 99.2 6.6E-12 1.4E-16 92.1 2.6 105 18-122 191-308 (467)
7 KOG1074|consensus 99.2 6.7E-12 1.5E-16 100.1 2.1 50 34-83 353-402 (958)
8 KOG1074|consensus 99.2 7E-12 1.5E-16 100.1 1.4 73 33-105 604-695 (958)
9 PHA02768 hypothetical protein; 99.2 1.1E-11 2.3E-16 68.1 1.4 43 35-79 6-48 (55)
10 KOG3576|consensus 99.1 9.2E-12 2E-16 85.3 0.5 88 31-118 114-224 (267)
11 KOG3608|consensus 99.0 2.3E-10 5E-15 84.1 3.9 105 17-123 248-369 (467)
12 PHA00733 hypothetical protein 99.0 7.6E-10 1.7E-14 71.9 5.0 50 32-83 71-120 (128)
13 PHA00733 hypothetical protein 98.9 2.6E-09 5.7E-14 69.3 4.7 84 20-103 26-124 (128)
14 PF13465 zf-H2C2_2: Zinc-finge 98.8 1E-09 2.2E-14 51.8 1.2 24 50-73 2-25 (26)
15 PF13465 zf-H2C2_2: Zinc-finge 98.8 4.9E-09 1.1E-13 49.4 2.0 26 21-46 1-26 (26)
16 PHA00732 hypothetical protein 98.4 1.5E-07 3.2E-12 56.1 2.4 44 34-83 1-45 (79)
17 PHA00616 hypothetical protein 98.4 6.2E-08 1.4E-12 50.8 0.7 34 34-67 1-34 (44)
18 PLN03086 PRLI-interacting fact 98.4 6.5E-07 1.4E-11 70.6 5.6 85 18-114 464-549 (567)
19 KOG3993|consensus 98.4 2.3E-07 5E-12 69.9 2.3 63 21-83 282-377 (500)
20 PLN03086 PRLI-interacting fact 98.3 1.4E-06 3.1E-11 68.7 5.1 92 13-117 413-515 (567)
21 PHA02768 hypothetical protein; 98.1 8.8E-07 1.9E-11 48.7 1.1 22 62-83 5-26 (55)
22 KOG3993|consensus 98.0 1.4E-06 3E-11 65.8 0.5 72 34-105 267-383 (500)
23 PF00096 zf-C2H2: Zinc finger, 97.9 6.2E-06 1.3E-10 37.3 0.9 21 35-55 1-21 (23)
24 PF00096 zf-C2H2: Zinc finger, 97.7 1.8E-05 4E-10 35.7 1.5 21 63-83 1-21 (23)
25 PF13912 zf-C2H2_6: C2H2-type 97.6 5.3E-05 1.2E-09 35.5 1.7 24 34-57 1-24 (27)
26 PF05605 zf-Di19: Drought indu 97.5 0.00012 2.7E-09 40.3 2.9 47 34-83 2-50 (54)
27 PHA00732 hypothetical protein 97.4 0.00012 2.6E-09 43.6 2.4 22 62-83 1-22 (79)
28 COG5189 SFP1 Putative transcri 97.4 5.5E-05 1.2E-09 55.6 1.1 52 31-82 346-418 (423)
29 PF13912 zf-C2H2_6: C2H2-type 97.4 0.00012 2.7E-09 34.2 1.7 24 62-85 1-24 (27)
30 PRK04860 hypothetical protein; 97.3 9.5E-05 2.1E-09 49.8 1.6 40 33-76 118-157 (160)
31 PF13894 zf-C2H2_4: C2H2-type 97.3 0.00011 2.4E-09 33.0 1.2 22 35-56 1-22 (24)
32 PF13894 zf-C2H2_4: C2H2-type 97.2 0.00024 5.1E-09 31.9 1.8 21 63-83 1-21 (24)
33 PHA00616 hypothetical protein 97.2 0.0001 2.2E-09 38.7 0.5 21 62-82 1-21 (44)
34 PF12756 zf-C2H2_2: C2H2 type 97.2 0.00021 4.6E-09 43.6 2.1 22 62-83 50-71 (100)
35 smart00355 ZnF_C2H2 zinc finge 96.8 0.00071 1.5E-08 30.7 1.3 22 36-57 2-23 (26)
36 PF09237 GAGA: GAGA factor; I 96.7 0.0013 2.8E-08 35.5 1.9 24 60-83 22-45 (54)
37 smart00355 ZnF_C2H2 zinc finge 96.5 0.0022 4.7E-08 29.0 1.8 21 63-83 1-21 (26)
38 PF12874 zf-met: Zinc-finger o 96.4 0.0017 3.7E-08 29.6 1.2 22 35-56 1-22 (25)
39 PF09237 GAGA: GAGA factor; I 96.2 0.0041 9E-08 33.5 2.1 34 29-62 19-52 (54)
40 PF05605 zf-Di19: Drought indu 96.1 0.0084 1.8E-07 32.8 3.0 38 62-102 2-53 (54)
41 PF12874 zf-met: Zinc-finger o 96.0 0.0042 9.1E-08 28.2 1.4 21 63-83 1-21 (25)
42 PF12171 zf-C2H2_jaz: Zinc-fin 96.0 0.0035 7.6E-08 29.2 1.1 22 35-56 2-23 (27)
43 PF12756 zf-C2H2_2: C2H2 type 95.8 0.0048 1E-07 37.5 1.4 63 36-102 1-74 (100)
44 PF12171 zf-C2H2_jaz: Zinc-fin 95.3 0.007 1.5E-07 28.2 0.6 21 63-83 2-22 (27)
45 PF13913 zf-C2HC_2: zinc-finge 94.6 0.027 5.8E-07 25.8 1.6 20 63-83 3-22 (25)
46 PF13909 zf-H2C2_5: C2H2-type 94.3 0.037 8E-07 24.8 1.7 20 63-83 1-20 (24)
47 smart00451 ZnF_U1 U1-like zinc 94.0 0.053 1.1E-06 26.5 2.1 22 62-83 3-24 (35)
48 KOG1146|consensus 93.4 0.048 1E-06 47.3 1.8 55 29-83 460-539 (1406)
49 smart00451 ZnF_U1 U1-like zinc 93.2 0.065 1.4E-06 26.2 1.6 23 34-56 3-25 (35)
50 COG5048 FOG: Zn-finger [Genera 92.5 0.043 9.3E-07 41.4 0.5 52 33-84 288-345 (467)
51 COG5189 SFP1 Putative transcri 92.4 0.067 1.5E-06 39.8 1.3 64 59-122 346-414 (423)
52 cd00350 rubredoxin_like Rubred 92.3 0.11 2.3E-06 25.5 1.6 25 35-71 2-26 (33)
53 PRK04860 hypothetical protein; 91.4 0.15 3.3E-06 34.4 2.0 31 18-48 127-157 (160)
54 KOG2893|consensus 91.1 0.057 1.2E-06 38.6 -0.3 42 36-81 12-53 (341)
55 KOG2186|consensus 91.0 0.18 4E-06 36.3 2.2 47 35-84 4-50 (276)
56 PF09986 DUF2225: Uncharacteri 89.0 0.16 3.4E-06 35.9 0.6 44 32-75 3-61 (214)
57 COG1592 Rubrerythrin [Energy p 88.3 0.32 6.9E-06 33.0 1.6 25 33-70 133-157 (166)
58 PF09538 FYDLN_acid: Protein o 87.8 0.33 7.2E-06 30.6 1.4 30 35-75 10-39 (108)
59 smart00531 TFIIE Transcription 87.6 0.94 2E-05 30.0 3.6 41 29-73 94-134 (147)
60 TIGR02098 MJ0042_CXXC MJ0042 f 87.3 0.5 1.1E-05 23.6 1.7 34 35-73 3-36 (38)
61 PF13719 zinc_ribbon_5: zinc-r 87.2 0.55 1.2E-05 23.5 1.8 34 35-73 3-36 (37)
62 TIGR00373 conserved hypothetic 86.9 0.81 1.8E-05 30.7 3.0 44 21-73 96-139 (158)
63 PRK00464 nrdR transcriptional 86.5 0.26 5.6E-06 33.1 0.4 41 35-77 1-43 (154)
64 KOG4173|consensus 85.6 0.54 1.2E-05 33.0 1.6 19 36-54 108-126 (253)
65 smart00659 RPOLCX RNA polymera 85.5 0.75 1.6E-05 24.1 1.8 29 34-73 2-30 (44)
66 COG4049 Uncharacterized protei 85.1 0.4 8.7E-06 26.4 0.7 27 57-83 12-38 (65)
67 COG2888 Predicted Zn-ribbon RN 85.1 0.84 1.8E-05 25.5 1.9 33 33-70 26-58 (61)
68 KOG2785|consensus 85.0 1.2 2.7E-05 34.0 3.4 53 31-83 163-241 (390)
69 PRK06266 transcription initiat 84.6 1 2.3E-05 30.9 2.7 45 22-75 105-149 (178)
70 PF13717 zinc_ribbon_4: zinc-r 84.4 1.1 2.3E-05 22.3 2.0 33 35-72 3-35 (36)
71 cd00729 rubredoxin_SM Rubredox 84.4 0.76 1.6E-05 22.6 1.5 26 34-71 2-27 (34)
72 TIGR02605 CxxC_CxxC_SSSS putat 84.3 0.35 7.6E-06 26.0 0.2 30 34-70 5-34 (52)
73 PRK00398 rpoP DNA-directed RNA 83.7 0.52 1.1E-05 24.7 0.7 31 33-73 2-32 (46)
74 smart00834 CxxC_CXXC_SSSS Puta 82.2 0.5 1.1E-05 23.8 0.3 31 34-71 5-35 (41)
75 COG5236 Uncharacterized conser 81.4 2 4.3E-05 32.6 3.3 13 87-99 290-302 (493)
76 COG4049 Uncharacterized protei 81.3 0.55 1.2E-05 25.9 0.2 28 29-56 12-39 (65)
77 smart00734 ZnF_Rad18 Rad18-lik 80.9 1.6 3.5E-05 20.0 1.7 19 64-83 3-21 (26)
78 PF09723 Zn-ribbon_8: Zinc rib 80.5 0.95 2.1E-05 23.3 1.0 30 34-70 5-34 (42)
79 KOG1146|consensus 80.1 0.86 1.9E-05 40.0 1.1 64 37-100 439-540 (1406)
80 TIGR02300 FYDLN_acid conserved 78.3 1.5 3.2E-05 28.4 1.5 32 35-77 10-41 (129)
81 PHA00626 hypothetical protein 78.2 1.7 3.7E-05 23.9 1.5 16 60-75 21-36 (59)
82 PF06524 NOA36: NOA36 protein; 76.4 3.8 8.1E-05 29.9 3.3 97 29-132 137-235 (314)
83 PRK14890 putative Zn-ribbon RN 76.3 2.3 5E-05 23.7 1.7 33 33-70 24-56 (59)
84 COG1996 RPC10 DNA-directed RNA 75.6 2.1 4.5E-05 23.0 1.4 30 33-72 5-34 (49)
85 PF03604 DNA_RNApol_7kD: DNA d 75.5 1.8 3.8E-05 21.0 1.0 28 35-73 1-28 (32)
86 PF14353 CpXC: CpXC protein 75.1 1.5 3.2E-05 28.2 0.9 47 35-81 2-57 (128)
87 KOG2186|consensus 72.9 2.1 4.5E-05 31.0 1.3 51 11-63 7-57 (276)
88 COG1997 RPL43A Ribosomal prote 71.9 2.5 5.5E-05 25.5 1.3 32 33-74 34-65 (89)
89 KOG2482|consensus 71.6 8.1 0.00018 29.4 4.1 49 7-55 116-166 (423)
90 PF02892 zf-BED: BED zinc fing 71.1 3.6 7.7E-05 21.1 1.7 24 59-82 13-40 (45)
91 smart00614 ZnF_BED BED zinc fi 71.1 2.9 6.3E-05 22.2 1.4 23 61-83 17-44 (50)
92 KOG2482|consensus 70.9 6.2 0.00013 30.0 3.4 22 35-56 196-217 (423)
93 COG5048 FOG: Zn-finger [Genera 70.7 1.5 3.2E-05 33.0 0.2 49 18-66 301-355 (467)
94 PF08790 zf-LYAR: LYAR-type C2 66.6 1.7 3.7E-05 20.4 -0.1 19 35-54 1-19 (28)
95 PRK09678 DNA-binding transcrip 64.0 2.8 6E-05 24.4 0.4 39 35-75 2-42 (72)
96 PF02176 zf-TRAF: TRAF-type zi 62.2 5.8 0.00013 21.5 1.5 42 32-74 7-54 (60)
97 PF10571 UPF0547: Uncharacteri 62.0 4.7 0.0001 18.5 0.9 10 64-73 16-25 (26)
98 KOG2893|consensus 61.8 2.4 5.1E-05 30.6 -0.2 42 60-102 9-59 (341)
99 KOG4167|consensus 61.8 1.6 3.6E-05 36.1 -1.1 24 35-58 793-816 (907)
100 KOG2593|consensus 61.4 9.8 0.00021 29.8 3.0 40 30-72 124-163 (436)
101 PF04959 ARS2: Arsenite-resist 60.6 1.1 2.3E-05 31.8 -2.1 24 33-56 76-99 (214)
102 PRK03824 hypA hydrogenase nick 60.4 5 0.00011 26.2 1.2 39 33-71 69-116 (135)
103 PF07754 DUF1610: Domain of un 59.7 5.4 0.00012 18.0 0.8 10 61-70 15-24 (24)
104 COG4530 Uncharacterized protei 59.7 5.5 0.00012 25.2 1.1 30 35-75 10-39 (129)
105 KOG2231|consensus 58.5 18 0.00039 30.1 4.1 20 64-83 184-203 (669)
106 PF04959 ARS2: Arsenite-resist 57.8 7.9 0.00017 27.4 1.8 26 58-83 73-98 (214)
107 PF01363 FYVE: FYVE zinc finge 56.8 6 0.00013 22.3 0.9 26 35-72 10-35 (69)
108 KOG3408|consensus 55.6 7.3 0.00016 25.0 1.2 26 31-56 54-79 (129)
109 PF08274 PhnA_Zn_Ribbon: PhnA 54.8 5.2 0.00011 19.1 0.4 24 36-70 4-27 (30)
110 TIGR00100 hypA hydrogenase nic 54.1 7.1 0.00015 24.7 1.0 26 34-71 70-95 (115)
111 PF05443 ROS_MUCR: ROS/MUCR tr 53.4 7 0.00015 25.5 0.9 27 33-62 71-97 (132)
112 KOG4173|consensus 52.3 6.2 0.00013 27.8 0.6 71 33-106 78-175 (253)
113 COG3091 SprT Zn-dependent meta 51.5 10 0.00022 25.4 1.4 34 33-71 116-149 (156)
114 PF13240 zinc_ribbon_2: zinc-r 50.3 8.5 0.00018 17.0 0.7 7 65-71 16-22 (23)
115 COG1655 Uncharacterized protei 49.8 4.4 9.6E-05 29.0 -0.4 40 32-71 17-71 (267)
116 PRK12380 hydrogenase nickel in 49.6 9.6 0.00021 24.1 1.1 25 34-70 70-94 (113)
117 KOG0978|consensus 49.4 4.7 0.0001 33.5 -0.4 47 35-81 644-697 (698)
118 smart00154 ZnF_AN1 AN1-like Zi 49.1 11 0.00023 19.1 1.0 15 62-76 12-26 (39)
119 PF12760 Zn_Tnp_IS1595: Transp 48.1 16 0.00034 19.0 1.6 27 35-70 19-45 (46)
120 KOG2785|consensus 47.3 15 0.00032 28.4 1.9 36 61-99 67-102 (390)
121 PRK00564 hypA hydrogenase nick 47.0 10 0.00022 24.1 1.0 26 34-71 71-97 (117)
122 TIGR00280 L37a ribosomal prote 46.7 9.1 0.0002 23.3 0.6 32 33-74 34-65 (91)
123 smart00064 FYVE Protein presen 46.4 14 0.00031 20.6 1.4 28 35-74 11-38 (68)
124 cd00065 FYVE FYVE domain; Zinc 46.3 15 0.00033 19.6 1.5 27 36-74 4-30 (57)
125 KOG3507|consensus 46.2 11 0.00023 21.0 0.8 33 33-76 19-51 (62)
126 COG1675 TFA1 Transcription ini 44.8 28 0.0006 24.0 2.8 44 21-73 100-143 (176)
127 PF15269 zf-C2H2_7: Zinc-finge 44.7 18 0.0004 19.0 1.5 22 63-84 21-42 (54)
128 TIGR01206 lysW lysine biosynth 44.0 16 0.00035 20.0 1.3 30 35-72 3-32 (54)
129 cd00924 Cyt_c_Oxidase_Vb Cytoc 43.7 10 0.00022 23.4 0.5 22 52-74 70-91 (97)
130 PF01428 zf-AN1: AN1-like Zinc 43.0 8.9 0.00019 19.7 0.2 15 61-75 12-26 (43)
131 PF04810 zf-Sec23_Sec24: Sec23 42.8 12 0.00026 18.9 0.6 32 34-71 2-33 (40)
132 PF13451 zf-trcl: Probable zin 41.7 11 0.00024 20.2 0.4 38 32-69 2-40 (49)
133 PF08271 TF_Zn_Ribbon: TFIIB z 41.7 20 0.00042 18.3 1.4 29 35-72 1-29 (43)
134 TIGR01385 TFSII transcription 41.4 26 0.00055 26.2 2.4 62 10-73 231-297 (299)
135 PRK03681 hypA hydrogenase nick 41.2 12 0.00026 23.7 0.6 27 34-71 70-96 (114)
136 PTZ00255 60S ribosomal protein 40.7 13 0.00027 22.7 0.6 32 33-74 35-66 (90)
137 PRK03976 rpl37ae 50S ribosomal 39.9 12 0.00027 22.7 0.5 32 33-74 35-66 (90)
138 COG4957 Predicted transcriptio 39.5 18 0.00039 23.8 1.2 25 35-62 77-101 (148)
139 PF01155 HypA: Hydrogenase exp 39.4 14 0.0003 23.3 0.7 25 35-71 71-95 (113)
140 smart00440 ZnF_C2C2 C2C2 Zinc 39.3 9.1 0.0002 19.4 -0.1 12 62-73 28-39 (40)
141 COG3357 Predicted transcriptio 38.5 17 0.00036 22.2 0.9 27 33-69 57-83 (97)
142 COG4391 Uncharacterized protei 37.8 10 0.00023 21.3 -0.1 45 25-73 15-59 (62)
143 PF07282 OrfB_Zn_ribbon: Putat 37.0 25 0.00054 19.7 1.4 30 35-74 29-58 (69)
144 PF10263 SprT-like: SprT-like 36.8 15 0.00033 24.1 0.6 10 35-44 124-133 (157)
145 PF13453 zf-TFIIB: Transcripti 36.7 24 0.00052 17.7 1.2 21 60-80 17-37 (41)
146 PF14446 Prok-RING_1: Prokaryo 35.4 25 0.00054 19.2 1.2 27 35-73 6-32 (54)
147 PF12013 DUF3505: Protein of u 35.1 25 0.00054 21.8 1.3 19 38-56 88-106 (109)
148 PF10013 DUF2256: Uncharacteri 35.0 27 0.00059 18.0 1.2 16 64-79 10-25 (42)
149 COG1327 Predicted transcriptio 34.8 14 0.0003 24.7 0.2 16 61-76 27-42 (156)
150 KOG4167|consensus 34.8 5.5 0.00012 33.3 -2.1 24 63-86 793-816 (907)
151 PF03811 Zn_Tnp_IS1: InsA N-te 34.7 22 0.00047 17.6 0.8 31 34-68 5-35 (36)
152 COG4888 Uncharacterized Zn rib 34.6 20 0.00044 22.3 0.8 38 32-73 20-57 (104)
153 smart00661 RPOL9 RNA polymeras 34.1 30 0.00065 18.0 1.4 12 62-73 20-31 (52)
154 PF15135 UPF0515: Uncharacteri 33.8 61 0.0013 23.7 3.2 29 16-44 89-122 (278)
155 PF09845 DUF2072: Zn-ribbon co 33.3 21 0.00046 23.3 0.8 15 62-76 1-15 (131)
156 KOG2636|consensus 33.2 30 0.00065 27.4 1.7 29 55-83 394-423 (497)
157 PRK00432 30S ribosomal protein 33.1 25 0.00055 18.8 1.0 12 61-72 36-47 (50)
158 PLN02294 cytochrome c oxidase 32.8 23 0.00049 24.3 0.9 24 50-74 130-153 (174)
159 PF04780 DUF629: Protein of un 32.7 33 0.00072 27.3 1.9 22 62-83 57-78 (466)
160 PF13878 zf-C2H2_3: zinc-finge 32.3 43 0.00093 17.0 1.7 10 63-72 14-23 (41)
161 COG1326 Uncharacterized archae 31.9 45 0.00098 23.3 2.3 36 34-73 6-41 (201)
162 COG5236 Uncharacterized conser 31.9 94 0.002 24.0 4.1 55 46-100 200-273 (493)
163 KOG2231|consensus 31.7 63 0.0014 27.1 3.4 62 18-83 161-233 (669)
164 PF14311 DUF4379: Domain of un 31.6 33 0.00073 18.4 1.3 12 35-46 29-40 (55)
165 PF13824 zf-Mss51: Zinc-finger 30.9 40 0.00088 18.5 1.5 13 60-72 12-24 (55)
166 PF11789 zf-Nse: Zinc-finger o 30.9 39 0.00085 18.5 1.5 32 32-67 22-53 (57)
167 KOG2593|consensus 30.6 37 0.0008 26.7 1.8 24 58-81 124-147 (436)
168 COG1198 PriA Primosomal protei 30.5 20 0.00043 30.2 0.4 14 58-71 471-484 (730)
169 PF11672 DUF3268: Protein of u 30.5 38 0.00082 21.1 1.6 38 33-70 1-39 (102)
170 COG2331 Uncharacterized protei 30.1 8.5 0.00018 22.6 -1.3 32 34-72 12-43 (82)
171 PF04110 APG12: Ubiquitin-like 29.7 13 0.00028 22.5 -0.6 22 114-135 53-74 (87)
172 KOG3439|consensus 29.2 20 0.00043 22.7 0.1 22 113-134 81-102 (116)
173 COG1571 Predicted DNA-binding 28.8 38 0.00082 26.6 1.6 31 36-77 352-382 (421)
174 PF07295 DUF1451: Protein of u 28.6 37 0.0008 22.6 1.4 29 33-71 111-139 (146)
175 PF14369 zf-RING_3: zinc-finge 28.6 55 0.0012 16.0 1.7 31 34-73 2-32 (35)
176 PRK00762 hypA hydrogenase nick 28.5 32 0.00068 22.1 1.0 32 34-71 70-101 (124)
177 COG1773 Rubredoxin [Energy pro 28.4 25 0.00053 19.3 0.4 12 62-73 3-14 (55)
178 KOG0717|consensus 28.3 35 0.00077 27.2 1.4 39 63-101 293-331 (508)
179 COG4640 Predicted membrane pro 26.3 51 0.0011 25.8 1.9 14 84-97 71-84 (465)
180 COG3364 Zn-ribbon containing p 25.9 44 0.00095 20.9 1.2 13 62-74 2-14 (112)
181 smart00731 SprT SprT homologue 25.1 52 0.0011 21.5 1.6 11 62-72 112-122 (146)
182 PF04423 Rad50_zn_hook: Rad50 25.0 25 0.00054 18.8 0.1 11 64-74 22-32 (54)
183 PF08209 Sgf11: Sgf11 (transcr 24.8 59 0.0013 15.8 1.4 20 62-82 4-23 (33)
184 COG3677 Transposase and inacti 24.8 36 0.00078 22.0 0.8 36 35-75 31-66 (129)
185 TIGR00627 tfb4 transcription f 24.8 55 0.0012 24.2 1.8 8 64-71 271-278 (279)
186 KOG2907|consensus 24.4 55 0.0012 20.8 1.5 39 34-74 74-114 (116)
187 PF05180 zf-DNL: DNL zinc fing 24.3 15 0.00033 21.0 -0.9 44 34-80 4-47 (66)
188 TIGR00622 ssl1 transcription f 24.1 90 0.002 19.8 2.4 46 36-83 57-102 (112)
189 COG5112 UFD2 U1-like Zn-finger 23.9 36 0.00078 21.4 0.6 25 31-55 52-76 (126)
190 PF01286 XPA_N: XPA protein N- 23.9 28 0.0006 17.1 0.1 13 64-76 5-17 (34)
191 PF07975 C1_4: TFIIH C1-like d 23.6 30 0.00064 18.7 0.2 30 33-68 20-49 (51)
192 PF04780 DUF629: Protein of un 23.2 52 0.0011 26.3 1.5 25 35-59 58-83 (466)
193 KOG2071|consensus 23.1 46 0.001 27.2 1.2 27 32-58 416-442 (579)
194 COG4338 Uncharacterized protei 23.1 32 0.00069 18.4 0.2 16 64-79 14-29 (54)
195 PF00301 Rubredoxin: Rubredoxi 22.7 34 0.00073 18.1 0.3 10 63-72 2-11 (47)
196 TIGR01384 TFS_arch transcripti 22.6 59 0.0013 19.8 1.4 27 36-74 2-28 (104)
197 KOG1994|consensus 22.5 1.3E+02 0.0027 21.8 3.2 22 33-54 238-259 (268)
198 PF14803 Nudix_N_2: Nudix N-te 22.3 33 0.0007 16.8 0.2 11 60-70 20-30 (34)
199 cd00730 rubredoxin Rubredoxin; 22.3 34 0.00073 18.3 0.2 11 63-73 2-12 (50)
200 PRK04351 hypothetical protein; 22.2 55 0.0012 21.8 1.3 10 63-72 113-122 (149)
201 PF09963 DUF2197: Uncharacteri 21.9 53 0.0012 18.1 1.0 36 36-71 4-40 (56)
202 PF04606 Ogr_Delta: Ogr/Delta- 21.8 29 0.00062 18.1 -0.1 37 36-74 1-39 (47)
203 COG4896 Uncharacterized protei 21.7 63 0.0014 18.2 1.2 10 61-70 30-39 (68)
204 KOG0717|consensus 21.6 46 0.00099 26.6 0.9 22 35-56 293-314 (508)
205 PF13821 DUF4187: Domain of un 21.4 1.2E+02 0.0025 16.5 2.3 20 33-52 26-45 (55)
206 PF10276 zf-CHCC: Zinc-finger 21.4 39 0.00085 17.2 0.4 12 61-72 28-39 (40)
207 TIGR00686 phnA alkylphosphonat 21.3 55 0.0012 20.6 1.1 28 36-74 4-31 (109)
208 PRK05978 hypothetical protein; 21.3 44 0.00095 22.3 0.7 31 35-74 34-64 (148)
209 PTZ00303 phosphatidylinositol 20.6 65 0.0014 27.8 1.6 32 35-73 461-492 (1374)
210 PRK14892 putative transcriptio 20.6 59 0.0013 20.1 1.1 36 33-75 20-55 (99)
211 COG5188 PRP9 Splicing factor 3 20.2 68 0.0015 24.8 1.5 29 55-83 367-396 (470)
No 1
>KOG2462|consensus
Probab=99.78 E-value=7.8e-20 Score=129.30 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=95.5
Q ss_pred CHHHHHHHHhhcCC---CCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhh-----------
Q psy1793 18 EAREREEKRRKYEM---LKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE----------- 83 (135)
Q Consensus 18 ~~~~l~~h~~~h~~---~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~----------- 83 (135)
+.++|.+|+.+|.. .+.+.|.+|+|.|.....|..|+++|+ -++.|.+|||.|++.+.|+.|++
T Consensus 142 T~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~ 219 (279)
T KOG2462|consen 142 TSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCP 219 (279)
T ss_pred cccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccccccCCCCccCC
Confidence 55688888888853 566889999999999989999988887 57889999999999999998888
Q ss_pred -hCCccCchhHHHHHhhhccCCCCCCCCCCCCCCccccCCCccchhcccCC
Q psy1793 84 -IGIAENRHKTVENHQKAVKIPPTETEGQTHGPMAETLDLGSRDLKKCFGT 133 (135)
Q Consensus 84 -c~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~l~~~~~~~c~g~ 133 (135)
|+++|+.+++|..|+.+|.+...|.|..|...|+..+-|.....-.|.+.
T Consensus 220 hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~C~~~ 270 (279)
T KOG2462|consen 220 HCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESACLKY 270 (279)
T ss_pred cccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhccccc
Confidence 88999999999999999999999999999988888877776666666653
No 2
>KOG2462|consensus
Probab=99.76 E-value=1.3e-19 Score=128.14 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=73.0
Q ss_pred HHHHHHHHhhcCCCCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhh------------hCC
Q psy1793 19 AREREEKRRKYEMLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE------------IGI 86 (135)
Q Consensus 19 ~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~------------c~~ 86 (135)
-..|+.|+++|. -+++|.+|||.|.+.=-|+.|+++|+|||||.|+.|+|+|..+++|+.|++ |+|
T Consensus 174 mpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~K 251 (279)
T KOG2462|consen 174 MPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGK 251 (279)
T ss_pred hHHHhhHhhccC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhh
Confidence 357899999987 579999999999999999999999999999999999999999999999987 899
Q ss_pred ccCchhHHHHHhhh
Q psy1793 87 AENRHKTVENHQKA 100 (135)
Q Consensus 87 ~f~~~~~l~~H~~~ 100 (135)
+|...+-|.+|...
T Consensus 252 sFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 252 SFALKSYLNKHSES 265 (279)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999999654
No 3
>KOG3623|consensus
Probab=99.48 E-value=1.5e-14 Score=113.67 Aligned_cols=75 Identities=16% Similarity=0.295 Sum_probs=66.8
Q ss_pred hhhhhHHhh-CHHHHHHHHhhcCCCCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhh
Q psy1793 9 LITLTQEEI-EAREREEKRRKYEMLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 9 ~~~~~~~~~-~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
.++++.+.. ..+.|.+|.--|+|.+||+|.+|.|.|+.+.+|..|++.|+|+|||+|..|+|.|+.+.....||.
T Consensus 896 aCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN 971 (1007)
T KOG3623|consen 896 ACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN 971 (1007)
T ss_pred hHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence 345566655 457899999999999999999999999999999999999999999999999999999999999987
No 4
>KOG3576|consensus
Probab=99.40 E-value=1.4e-13 Score=94.13 Aligned_cols=66 Identities=27% Similarity=0.425 Sum_probs=54.3
Q ss_pred CHHHHHHHHhhcCCCCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhh
Q psy1793 18 EAREREEKRRKYEMLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 18 ~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
-+.-|.+|++.|..-+.|-|..||+.|.....|.+|+++|+|.+||+|..|+|+|..+-.|..|.+
T Consensus 129 lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~ 194 (267)
T KOG3576|consen 129 LQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK 194 (267)
T ss_pred HHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence 345677888888888888888888888888888888888888888888888888888888888765
No 5
>KOG3623|consensus
Probab=99.21 E-value=2.8e-12 Score=101.18 Aligned_cols=70 Identities=19% Similarity=0.326 Sum_probs=65.8
Q ss_pred CCCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhh------------hCCccCchhHHHHHh
Q psy1793 31 MLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE------------IGIAENRHKTVENHQ 98 (135)
Q Consensus 31 ~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~------------c~~~f~~~~~l~~H~ 98 (135)
.+.+|.|..|+|.|...++|.+|..-|+|.+||+|.+|.|+|..+..|..|++ |+|.|.++.++..||
T Consensus 891 e~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHM 970 (1007)
T KOG3623|consen 891 EDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHM 970 (1007)
T ss_pred ccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhh
Confidence 34679999999999999999999999999999999999999999999999988 899999999999998
Q ss_pred hh
Q psy1793 99 KA 100 (135)
Q Consensus 99 ~~ 100 (135)
..
T Consensus 971 NH 972 (1007)
T KOG3623|consen 971 NH 972 (1007)
T ss_pred cc
Confidence 64
No 6
>KOG3608|consensus
Probab=99.21 E-value=6.6e-12 Score=92.11 Aligned_cols=105 Identities=11% Similarity=0.114 Sum_probs=92.6
Q ss_pred CHHHHHHHHhhcCCCCceeCccccccccChhhHHhhhcc--cCCCcceecCCCCCCCCChHhHHHHhh----------hC
Q psy1793 18 EAREREEKRRKYEMLKEFQCSVCAKYFHRAADLKRHSIC--HTGLKPYACQDVERSPPVMLMVVKTGE----------IG 85 (135)
Q Consensus 18 ~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~--h~~~k~~~C~~C~k~f~~~~~L~~H~~----------c~ 85 (135)
....|++|.+.|++++...|..||..|..+..|-.|.+. -....+|+|..|.|.|.....|..|+. |.
T Consensus 191 ~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCd 270 (467)
T KOG3608|consen 191 NKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCD 270 (467)
T ss_pred cHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccc
Confidence 567899999999999999999999999999999999864 345679999999999999999998877 78
Q ss_pred CccCchhHHHHHhhh-ccCCCCCCCCCCCCCCccccCC
Q psy1793 86 IAENRHKTVENHQKA-VKIPPTETEGQTHGPMAETLDL 122 (135)
Q Consensus 86 ~~f~~~~~l~~H~~~-h~~~~~~~~~~~~~~~~~~~~l 122 (135)
.+....++|.+|++. |....++.|..|...+..-++|
T Consensus 271 mtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL 308 (467)
T KOG3608|consen 271 MTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDL 308 (467)
T ss_pred cCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHH
Confidence 888999999999887 7788999999999877765555
No 7
>KOG1074|consensus
Probab=99.19 E-value=6.7e-12 Score=100.15 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=45.8
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhh
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
+++|..|.+.|...+.|+.|.++|+|++||+|.+||.+|+.+.+|+.|..
T Consensus 353 khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~ 402 (958)
T KOG1074|consen 353 KHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQ 402 (958)
T ss_pred cchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeee
Confidence 36899999999999999999999999999999999999999999998854
No 8
>KOG1074|consensus
Probab=99.17 E-value=7e-12 Score=100.05 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=66.6
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhh-------------------hCCccCchhH
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE-------------------IGIAENRHKT 93 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-------------------c~~~f~~~~~ 93 (135)
-|-.|-+|.+.+.-.+.|+.|.++|+|++||+|.+||++|..+.+|+.|+. |.+.|...-.
T Consensus 604 dPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~ 683 (958)
T KOG1074|consen 604 DPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVT 683 (958)
T ss_pred CccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccc
Confidence 357899999999999999999999999999999999999999999999975 7788999999
Q ss_pred HHHHhhhccCCC
Q psy1793 94 VENHQKAVKIPP 105 (135)
Q Consensus 94 l~~H~~~h~~~~ 105 (135)
|..|++.|.+..
T Consensus 684 lpQhIriH~~~~ 695 (958)
T KOG1074|consen 684 LPQHIRIHLGGQ 695 (958)
T ss_pred ccceEEeecCCC
Confidence 999999998554
No 9
>PHA02768 hypothetical protein; Provisional
Probab=99.16 E-value=1.1e-11 Score=68.08 Aligned_cols=43 Identities=12% Similarity=0.311 Sum_probs=40.0
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHH
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVV 79 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~ 79 (135)
|.|+.||+.|....+|..||++|+ ++|+|..|++.|+..+.|.
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence 899999999999999999999998 7999999999999887664
No 10
>KOG3576|consensus
Probab=99.14 E-value=9.2e-12 Score=85.25 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=75.9
Q ss_pred CCCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhh------------hCCccCchhHHHHHh
Q psy1793 31 MLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE------------IGIAENRHKTVENHQ 98 (135)
Q Consensus 31 ~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~------------c~~~f~~~~~l~~H~ 98 (135)
+...|.|.+|+|.|....-|.+|++.|+..+.|.|..|||.|....+|++|++ |+++|++..+|..|.
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl 193 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL 193 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence 34569999999999999999999999999999999999999999999999988 899999999999997
Q ss_pred hhccCC-----------CCCCCCCCCCCCcc
Q psy1793 99 KAVKIP-----------PTETEGQTHGPMAE 118 (135)
Q Consensus 99 ~~h~~~-----------~~~~~~~~~~~~~~ 118 (135)
+..++- ..|.|+.|+.+...
T Consensus 194 ~kvhgv~~~yaykerr~kl~vcedcg~t~~~ 224 (267)
T KOG3576|consen 194 KKVHGVQHQYAYKERRAKLYVCEDCGYTSER 224 (267)
T ss_pred HHHcCchHHHHHHHhhhheeeecccCCCCCC
Confidence 764433 34677777765443
No 11
>KOG3608|consensus
Probab=99.03 E-value=2.3e-10 Score=84.14 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=80.6
Q ss_pred hCHHHHHHHHhhcCCCCceeCccccccccChhhHHhhhcc-cCCCcceecCCCCCCCCChHhHHHHhh------------
Q psy1793 17 IEAREREEKRRKYEMLKEFQCSVCAKYFHRAADLKRHSIC-HTGLKPYACQDVERSPPVMLMVVKTGE------------ 83 (135)
Q Consensus 17 ~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~-h~~~k~~~C~~C~k~f~~~~~L~~H~~------------ 83 (135)
.....|..|+..|.. -|+|+.|+-+....+.|..|++. |+..+||+|..|++.|.+.+.|.+|..
T Consensus 248 aTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~ 325 (467)
T KOG3608|consen 248 ATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHP 325 (467)
T ss_pred hHHHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCC
Confidence 355678888887764 48888888888888899999874 788889999999999999889988866
Q ss_pred -hCCccCchhHHHHHhhhcc---CCCCCCCCCCCCCCccccCCC
Q psy1793 84 -IGIAENRHKTVENHQKAVK---IPPTETEGQTHGPMAETLDLG 123 (135)
Q Consensus 84 -c~~~f~~~~~l~~H~~~h~---~~~~~~~~~~~~~~~~~~~l~ 123 (135)
|+.+|.....+.+|++-++ ++++|.|.-|...+...-.|+
T Consensus 326 ~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~ 369 (467)
T KOG3608|consen 326 DCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLS 369 (467)
T ss_pred CCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHH
Confidence 7778888888888877655 445677777766665544443
No 12
>PHA00733 hypothetical protein
Probab=98.99 E-value=7.6e-10 Score=71.85 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=31.8
Q ss_pred CCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhh
Q psy1793 32 LKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 32 ~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
.+||.|..|++.|.....|..|++.+ ..+|.|..|++.|.....|..|+.
T Consensus 71 ~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~ 120 (128)
T PHA00733 71 VSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVC 120 (128)
T ss_pred CCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHH
Confidence 56666666666666666666666654 245666666666666666666643
No 13
>PHA00733 hypothetical protein
Probab=98.89 E-value=2.6e-09 Score=69.34 Aligned_cols=84 Identities=11% Similarity=0.045 Sum_probs=64.7
Q ss_pred HHHHHHHhhcCCCCceeCccccccccChhhHHhh--h---cccCCCcceecCCCCCCCCChHhHHHHhh----------h
Q psy1793 20 REREEKRRKYEMLKEFQCSVCAKYFHRAADLKRH--S---ICHTGLKPYACQDVERSPPVMLMVVKTGE----------I 84 (135)
Q Consensus 20 ~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H--~---~~h~~~k~~~C~~C~k~f~~~~~L~~H~~----------c 84 (135)
.+|..+-..-...+++.|.+|.+.|.....|..+ + ..+.+.+||.|+.|++.|.....|..|++ |
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~C 105 (128)
T PHA00733 26 EELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVC 105 (128)
T ss_pred HHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCC
Confidence 3455554444556789999999988877666554 1 12345889999999999999999999975 8
Q ss_pred CCccCchhHHHHHhhhccC
Q psy1793 85 GIAENRHKTVENHQKAVKI 103 (135)
Q Consensus 85 ~~~f~~~~~l~~H~~~h~~ 103 (135)
++.|.....|..|+...++
T Consensus 106 gK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 106 GKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CCccCCHHHHHHHHHHhcC
Confidence 8999999999999877554
No 14
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.85 E-value=1e-09 Score=51.77 Aligned_cols=24 Identities=46% Similarity=0.733 Sum_probs=12.8
Q ss_pred HHhhhcccCCCcceecCCCCCCCC
Q psy1793 50 LKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 50 l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
|..|+++|++++||.|+.|+++|.
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEES
T ss_pred HHHHhhhcCCCCCCCCCCCcCeeC
Confidence 445555555555555555555553
No 15
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.76 E-value=4.9e-09 Score=49.37 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=23.9
Q ss_pred HHHHHHhhcCCCCceeCccccccccC
Q psy1793 21 EREEKRRKYEMLKEFQCSVCAKYFHR 46 (135)
Q Consensus 21 ~l~~h~~~h~~~~~~~C~~C~k~f~~ 46 (135)
+|..|+++|++++||.|+.|++.|..
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 58899999999999999999999863
No 16
>PHA00732 hypothetical protein
Probab=98.43 E-value=1.5e-07 Score=56.07 Aligned_cols=44 Identities=23% Similarity=0.279 Sum_probs=37.8
Q ss_pred ceeCccccccccChhhHHhhhcc-cCCCcceecCCCCCCCCChHhHHHHhh
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSIC-HTGLKPYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~-h~~~k~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
||.|..|++.|.....|..|++. |. ++.|+.|++.|. .|..|..
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~ 45 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFY 45 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhc
Confidence 68999999999999999999984 65 468999999997 4777765
No 17
>PHA00616 hypothetical protein
Probab=98.43 E-value=6.2e-08 Score=50.79 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=31.9
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~ 67 (135)
||.|..||+.|...+.|..|++.|++++++.|+.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 6899999999999999999999999999998864
No 18
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.38 E-value=6.5e-07 Score=70.58 Aligned_cols=85 Identities=13% Similarity=0.219 Sum_probs=41.6
Q ss_pred CHHHHHHHHhhcCCCCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhhhCCcc-CchhHHHH
Q psy1793 18 EAREREEKRRKYEMLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGEIGIAE-NRHKTVEN 96 (135)
Q Consensus 18 ~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~c~~~f-~~~~~l~~ 96 (135)
....|..|+..|+ +++.|. ||..+ .+..|..|+.+|.+.+++.|+.|++.|...... -.+ ...+.|..
T Consensus 464 ~~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~-------~d~~d~~s~Lt~ 532 (567)
T PLN03086 464 QQGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSA-------MDVRDRLRGMSE 532 (567)
T ss_pred chHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccc-------cchhhhhhhHHH
Confidence 3445555555543 455555 55433 345555555555555555555555555311000 000 02345666
Q ss_pred HhhhccCCCCCCCCCCCC
Q psy1793 97 HQKAVKIPPTETEGQTHG 114 (135)
Q Consensus 97 H~~~h~~~~~~~~~~~~~ 114 (135)
|.... +..++.|..|+.
T Consensus 533 HE~~C-G~rt~~C~~Cgk 549 (567)
T PLN03086 533 HESIC-GSRTAPCDSCGR 549 (567)
T ss_pred HHHhc-CCcceEccccCC
Confidence 66663 555666666554
No 19
>KOG3993|consensus
Probab=98.35 E-value=2.3e-07 Score=69.91 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=50.0
Q ss_pred HHHHHHhhcCCCCceeCccccccccChhhHHhhhcccC--------CCc-------------------------ceecCC
Q psy1793 21 EREEKRRKYEMLKEFQCSVCAKYFHRAADLKRHSICHT--------GLK-------------------------PYACQD 67 (135)
Q Consensus 21 ~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~--------~~k-------------------------~~~C~~ 67 (135)
.|.+|.........|.|.+|+|.|.-.++|..|.++|. +.. -|.|..
T Consensus 282 ~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~ 361 (500)
T KOG3993|consen 282 ALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHT 361 (500)
T ss_pred HHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHH
Confidence 67788776666667999999999999999999999883 222 277888
Q ss_pred CCCCCCChHhHHHHhh
Q psy1793 68 VERSPPVMLMVVKTGE 83 (135)
Q Consensus 68 C~k~f~~~~~L~~H~~ 83 (135)
|+|.|.+...|+.|+-
T Consensus 362 C~KkFrRqAYLrKHql 377 (500)
T KOG3993|consen 362 CGKKFRRQAYLRKHQL 377 (500)
T ss_pred hhhhhHHHHHHHHhHH
Confidence 8888888888888744
No 20
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.27 E-value=1.4e-06 Score=68.68 Aligned_cols=92 Identities=11% Similarity=0.070 Sum_probs=60.1
Q ss_pred hHHhhCHHHHHHHHhhcCCCCceeCcc--ccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhh-------
Q psy1793 13 TQEEIEAREREEKRRKYEMLKEFQCSV--CAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE------- 83 (135)
Q Consensus 13 ~~~~~~~~~l~~h~~~h~~~~~~~C~~--C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~------- 83 (135)
+........|..|...-.. ..-.|+. |+..|.+ ..+ .+.+.|+.|++.|. ...|..|+.
T Consensus 413 C~~~i~l~~l~lHe~~C~r-~~V~Cp~~~Cg~v~~r-~el---------~~H~~C~~Cgk~f~-~s~LekH~~~~Hkpv~ 480 (567)
T PLN03086 413 CKHYIPSRSIALHEAYCSR-HNVVCPHDGCGIVLRV-EEA---------KNHVHCEKCGQAFQ-QGEMEKHMKVFHEPLQ 480 (567)
T ss_pred CCCccchhHHHHHHhhCCC-cceeCCcccccceeec-ccc---------ccCccCCCCCCccc-hHHHHHHHHhcCCCcc
Confidence 4455667778888754332 3345663 7766632 222 33357788887775 566777766
Q ss_pred --hCCccCchhHHHHHhhhccCCCCCCCCCCCCCCc
Q psy1793 84 --IGIAENRHKTVENHQKAVKIPPTETEGQTHGPMA 117 (135)
Q Consensus 84 --c~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~ 117 (135)
|++.+ ....|..|+++|....++.|.-|...+.
T Consensus 481 CpCg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 481 CPCGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred CCCCCCc-chhHHHhhhhccCCCCceeCCCCCCccc
Confidence 56543 5678888888888888888888887664
No 21
>PHA02768 hypothetical protein; Provisional
Probab=98.14 E-value=8.8e-07 Score=48.71 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=14.5
Q ss_pred ceecCCCCCCCCChHhHHHHhh
Q psy1793 62 PYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 62 ~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
.|.|+.||+.|++.++|..|++
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r 26 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLR 26 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHH
Confidence 4778888777766666555544
No 22
>KOG3993|consensus
Probab=98.02 E-value=1.4e-06 Score=65.78 Aligned_cols=72 Identities=17% Similarity=0.324 Sum_probs=62.2
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhh------------------------------
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE------------------------------ 83 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~------------------------------ 83 (135)
.|.|..|.-.|.....|.+|.-.---..-|+|++|+|.|+-..+|..|.+
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~ 346 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE 346 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence 39999999999999999999643223357999999999999999999966
Q ss_pred ---------------hCCccCchhHHHHHhhhccCCC
Q psy1793 84 ---------------IGIAENRHKTVENHQKAVKIPP 105 (135)
Q Consensus 84 ---------------c~~~f~~~~~l~~H~~~h~~~~ 105 (135)
|++.|.+...|+.|+-+|+...
T Consensus 347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~ 383 (500)
T KOG3993|consen 347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAP 383 (500)
T ss_pred ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccc
Confidence 8999999999999999888655
No 23
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.85 E-value=6.2e-06 Score=37.29 Aligned_cols=21 Identities=38% Similarity=0.928 Sum_probs=10.6
Q ss_pred eeCccccccccChhhHHhhhc
Q psy1793 35 FQCSVCAKYFHRAADLKRHSI 55 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~ 55 (135)
|.|..|++.|..+..|..|++
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMR 21 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHh
Confidence 345555555555555555544
No 24
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.73 E-value=1.8e-05 Score=35.69 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=19.1
Q ss_pred eecCCCCCCCCChHhHHHHhh
Q psy1793 63 YACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 63 ~~C~~C~k~f~~~~~L~~H~~ 83 (135)
|.|+.|++.|.....|..|++
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMR 21 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHh
Confidence 689999999999999999975
No 25
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.55 E-value=5.3e-05 Score=35.52 Aligned_cols=24 Identities=33% Similarity=0.760 Sum_probs=14.9
Q ss_pred ceeCccccccccChhhHHhhhccc
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICH 57 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h 57 (135)
||.|..|++.|.....|..|++.|
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCCccCCccCChhHHHHHhHHh
Confidence 456666666666666666666554
No 26
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.50 E-value=0.00012 Score=40.27 Aligned_cols=47 Identities=19% Similarity=0.291 Sum_probs=34.0
Q ss_pred ceeCccccccccChhhHHhhhcc-cCC-CcceecCCCCCCCCChHhHHHHhh
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSIC-HTG-LKPYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~-h~~-~k~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
.|.|+.|++ ......|..|... |.. .+.+.|++|...+. .+|..|+.
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~ 50 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLN 50 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHH
Confidence 489999999 4556789999764 554 35799999987543 25666653
No 27
>PHA00732 hypothetical protein
Probab=97.42 E-value=0.00012 Score=43.57 Aligned_cols=22 Identities=5% Similarity=0.182 Sum_probs=19.6
Q ss_pred ceecCCCCCCCCChHhHHHHhh
Q psy1793 62 PYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 62 ~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
||.|..|++.|.....|..|++
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r 22 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHAR 22 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhh
Confidence 6889999999999999999875
No 28
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.41 E-value=5.5e-05 Score=55.55 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=42.7
Q ss_pred CCCceeCcc--ccccccChhhHHhhhcc-c------------------CCCcceecCCCCCCCCChHhHHHHh
Q psy1793 31 MLKEFQCSV--CAKYFHRAADLKRHSIC-H------------------TGLKPYACQDVERSPPVMLMVVKTG 82 (135)
Q Consensus 31 ~~~~~~C~~--C~k~f~~~~~l~~H~~~-h------------------~~~k~~~C~~C~k~f~~~~~L~~H~ 82 (135)
+++||+|++ |.|.|.....|+-|+.- | ...|||.|+.|+|.|.....|+-|.
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr 418 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR 418 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence 359999987 99999999999998752 3 1238999999999998888887774
No 29
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.37 E-value=0.00012 Score=34.22 Aligned_cols=24 Identities=8% Similarity=0.329 Sum_probs=21.4
Q ss_pred ceecCCCCCCCCChHhHHHHhhhC
Q psy1793 62 PYACQDVERSPPVMLMVVKTGEIG 85 (135)
Q Consensus 62 ~~~C~~C~k~f~~~~~L~~H~~c~ 85 (135)
||.|..|++.|.....|..|++.+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCCccCCccCChhHHHHHhHHh
Confidence 689999999999999999998754
No 30
>PRK04860 hypothetical protein; Provisional
Probab=97.35 E-value=9.5e-05 Score=49.77 Aligned_cols=40 Identities=18% Similarity=0.421 Sum_probs=34.6
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChH
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVML 76 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~ 76 (135)
-+|.|. |+. ....+..|.++|+++++|.|..|+..|....
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 469998 987 6778899999999999999999999986543
No 31
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.33 E-value=0.00011 Score=33.04 Aligned_cols=22 Identities=36% Similarity=0.889 Sum_probs=10.4
Q ss_pred eeCccccccccChhhHHhhhcc
Q psy1793 35 FQCSVCAKYFHRAADLKRHSIC 56 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~ 56 (135)
|.|+.|++.|.....|..|+.+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 3455555555555555555543
No 32
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.24 E-value=0.00024 Score=31.89 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=16.9
Q ss_pred eecCCCCCCCCChHhHHHHhh
Q psy1793 63 YACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 63 ~~C~~C~k~f~~~~~L~~H~~ 83 (135)
|.|+.|++.|.....|..|+.
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~ 21 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMR 21 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHH
Confidence 689999999999999999875
No 33
>PHA00616 hypothetical protein
Probab=97.23 E-value=0.0001 Score=38.72 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=12.1
Q ss_pred ceecCCCCCCCCChHhHHHHh
Q psy1793 62 PYACQDVERSPPVMLMVVKTG 82 (135)
Q Consensus 62 ~~~C~~C~k~f~~~~~L~~H~ 82 (135)
||+|+.||+.|..++.|..|+
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~ 21 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHL 21 (44)
T ss_pred CCccchhhHHHhhHHHHHHHH
Confidence 577777766655554444443
No 34
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.23 E-value=0.00021 Score=43.64 Aligned_cols=22 Identities=5% Similarity=0.089 Sum_probs=14.1
Q ss_pred ceecCCCCCCCCChHhHHHHhh
Q psy1793 62 PYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 62 ~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
.+.|..|++.|.....|..|++
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~ 71 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMR 71 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHH
T ss_pred CCCCCccCCCCcCHHHHHHHHc
Confidence 4667777777766666666666
No 35
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.81 E-value=0.00071 Score=30.65 Aligned_cols=22 Identities=36% Similarity=0.738 Sum_probs=11.7
Q ss_pred eCccccccccChhhHHhhhccc
Q psy1793 36 QCSVCAKYFHRAADLKRHSICH 57 (135)
Q Consensus 36 ~C~~C~k~f~~~~~l~~H~~~h 57 (135)
.|..|++.|.....|..|++.|
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCcchhCCHHHHHHHHHHh
Confidence 4555555555555555555433
No 36
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.71 E-value=0.0013 Score=35.46 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=10.3
Q ss_pred CcceecCCCCCCCCChHhHHHHhh
Q psy1793 60 LKPYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 60 ~k~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
+.|-.|++|+..+++..+|++|++
T Consensus 22 ~~PatCP~C~a~~~~srnLrRHle 45 (54)
T PF09237_consen 22 EQPATCPICGAVIRQSRNLRRHLE 45 (54)
T ss_dssp S--EE-TTT--EESSHHHHHHHHH
T ss_pred CCCCCCCcchhhccchhhHHHHHH
Confidence 445555555555555555555553
No 37
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.49 E-value=0.0022 Score=28.96 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=17.9
Q ss_pred eecCCCCCCCCChHhHHHHhh
Q psy1793 63 YACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 63 ~~C~~C~k~f~~~~~L~~H~~ 83 (135)
|.|..|++.|.....|..|++
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH
Confidence 578899999998888888876
No 38
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.43 E-value=0.0017 Score=29.60 Aligned_cols=22 Identities=32% Similarity=0.750 Sum_probs=14.2
Q ss_pred eeCccccccccChhhHHhhhcc
Q psy1793 35 FQCSVCAKYFHRAADLKRHSIC 56 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~ 56 (135)
|.|.+|++.|.....|..|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 4566666666666666666653
No 39
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.23 E-value=0.0041 Score=33.52 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=24.4
Q ss_pred cCCCCceeCccccccccChhhHHhhhcccCCCcc
Q psy1793 29 YEMLKEFQCSVCAKYFHRAADLKRHSICHTGLKP 62 (135)
Q Consensus 29 h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~ 62 (135)
+..+.|..|++|+..+....+|.+|+.++++.+|
T Consensus 19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 3457899999999999999999999988777765
No 40
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=96.08 E-value=0.0084 Score=32.84 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=26.8
Q ss_pred ceecCCCCCCCCChHhHHHHhh--------------hCCccCchhHHHHHhhhcc
Q psy1793 62 PYACQDVERSPPVMLMVVKTGE--------------IGIAENRHKTVENHQKAVK 102 (135)
Q Consensus 62 ~~~C~~C~k~f~~~~~L~~H~~--------------c~~~f~~~~~l~~H~~~h~ 102 (135)
.|.|+.|++. .+...|..|.. |...+ ..+|..|+..++
T Consensus 2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~--~~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRV--TDNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhh--hhHHHHHHHHhc
Confidence 4889999995 55678999966 44332 247888877654
No 41
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.03 E-value=0.0042 Score=28.24 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=18.6
Q ss_pred eecCCCCCCCCChHhHHHHhh
Q psy1793 63 YACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 63 ~~C~~C~k~f~~~~~L~~H~~ 83 (135)
|.|..|++.|.....|..|++
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHC
Confidence 679999999999999999875
No 42
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=96.01 E-value=0.0035 Score=29.24 Aligned_cols=22 Identities=41% Similarity=0.880 Sum_probs=17.4
Q ss_pred eeCccccccccChhhHHhhhcc
Q psy1793 35 FQCSVCAKYFHRAADLKRHSIC 56 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~ 56 (135)
|.|..|++.|.....+..|+++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 6788888888888888887764
No 43
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=95.83 E-value=0.0048 Score=37.53 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=16.2
Q ss_pred eCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhh-----------hCCccCchhHHHHHhhhcc
Q psy1793 36 QCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE-----------IGIAENRHKTVENHQKAVK 102 (135)
Q Consensus 36 ~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-----------c~~~f~~~~~l~~H~~~h~ 102 (135)
+|..|+..|.....|..|+....+...-.. ..+.....+..+.+ |++.|.....|..|++.+.
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~ 74 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQ----KYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKH 74 (100)
T ss_dssp ----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred Cccccccccccccccccccccccccccccc----cccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCcc
Confidence 489999999999999999975443221111 11112222222211 8999999999999999753
No 44
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.27 E-value=0.007 Score=28.20 Aligned_cols=21 Identities=5% Similarity=0.115 Sum_probs=18.2
Q ss_pred eecCCCCCCCCChHhHHHHhh
Q psy1793 63 YACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 63 ~~C~~C~k~f~~~~~L~~H~~ 83 (135)
|-|..|++.|.....|..|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 679999999999999988865
No 45
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=94.62 E-value=0.027 Score=25.83 Aligned_cols=20 Identities=15% Similarity=-0.001 Sum_probs=12.7
Q ss_pred eecCCCCCCCCChHhHHHHhh
Q psy1793 63 YACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 63 ~~C~~C~k~f~~~~~L~~H~~ 83 (135)
..|+.||+.| ..+.|..|+.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHH
Confidence 3577777777 5556666654
No 46
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=94.32 E-value=0.037 Score=24.80 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=12.4
Q ss_pred eecCCCCCCCCChHhHHHHhh
Q psy1793 63 YACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 63 ~~C~~C~k~f~~~~~L~~H~~ 83 (135)
|+|+.|+.... ...|..|++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~ 20 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLK 20 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHH
Confidence 67888877665 667777654
No 47
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=94.05 E-value=0.053 Score=26.51 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=15.3
Q ss_pred ceecCCCCCCCCChHhHHHHhh
Q psy1793 62 PYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 62 ~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
+|.|..|++.|.....+..|+.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 4667777777777777776654
No 48
>KOG1146|consensus
Probab=93.35 E-value=0.048 Score=47.26 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=47.7
Q ss_pred cCCCCceeCccccccccChhhHHhhhcccC-------------------------CCcceecCCCCCCCCChHhHHHHhh
Q psy1793 29 YEMLKEFQCSVCAKYFHRAADLKRHSICHT-------------------------GLKPYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 29 h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~-------------------------~~k~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
+...+.|.|+.|+-.|.....|..||++.+ +.+||.|..|..+++.+.+|..|+.
T Consensus 460 ~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~Lsihlq 539 (1406)
T KOG1146|consen 460 HSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQ 539 (1406)
T ss_pred ecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHH
Confidence 455688999999999999999999999721 2368999999999999999999987
No 49
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=93.24 E-value=0.065 Score=26.18 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.5
Q ss_pred ceeCccccccccChhhHHhhhcc
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSIC 56 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~ 56 (135)
+|.|..|+..|.....+..|+..
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 58999999999999999999764
No 50
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=92.54 E-value=0.043 Score=41.40 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=47.3
Q ss_pred CceeCccccccccChhhHHhhhc--ccCCC--cceecC--CCCCCCCChHhHHHHhhh
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSI--CHTGL--KPYACQ--DVERSPPVMLMVVKTGEI 84 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~--~h~~~--k~~~C~--~C~k~f~~~~~L~~H~~c 84 (135)
.++.|..|...|.....+..|.+ .|+++ +|+.|+ .|++.|.+...+..|...
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 345 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILL 345 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccc
Confidence 46889999999999999999999 89999 999999 799999999999888763
No 51
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=92.43 E-value=0.067 Score=39.78 Aligned_cols=64 Identities=9% Similarity=-0.082 Sum_probs=39.9
Q ss_pred CCcceecCC--CCCCCCChHhHHHHhh---hCCccCchhHHHHHhhhccCCCCCCCCCCCCCCccccCC
Q psy1793 59 GLKPYACQD--VERSPPVMLMVVKTGE---IGIAENRHKTVENHQKAVKIPPTETEGQTHGPMAETLDL 122 (135)
Q Consensus 59 ~~k~~~C~~--C~k~f~~~~~L~~H~~---c~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~~~~~~l 122 (135)
++|||+|++ |.|.|.....|+-|+. |.........-..|....-...||.|+-|...+..---|
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGL 414 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGL 414 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccc
Confidence 469999975 9999999999999877 322222222223333334455677777777666553333
No 52
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=92.34 E-value=0.11 Score=25.45 Aligned_cols=25 Identities=20% Similarity=0.648 Sum_probs=18.1
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~ 71 (135)
|.|..||-.+.-. ..++.|+.|+..
T Consensus 2 ~~C~~CGy~y~~~------------~~~~~CP~Cg~~ 26 (33)
T cd00350 2 YVCPVCGYIYDGE------------EAPWVCPVCGAP 26 (33)
T ss_pred EECCCCCCEECCC------------cCCCcCcCCCCc
Confidence 7899998654432 268899999864
No 53
>PRK04860 hypothetical protein; Provisional
Probab=91.37 E-value=0.15 Score=34.38 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=26.2
Q ss_pred CHHHHHHHHhhcCCCCceeCccccccccChh
Q psy1793 18 EAREREEKRRKYEMLKEFQCSVCAKYFHRAA 48 (135)
Q Consensus 18 ~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~ 48 (135)
-...+..|.++|.++++|.|..|+..|....
T Consensus 127 ~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 127 HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 3457899999999999999999999887543
No 54
>KOG2893|consensus
Probab=91.06 E-value=0.057 Score=38.62 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=33.4
Q ss_pred eCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHH
Q psy1793 36 QCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKT 81 (135)
Q Consensus 36 ~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H 81 (135)
.|..|++-|.....|.+|++ .|-|+|-+|.|..-+-..|..|
T Consensus 12 wcwycnrefddekiliqhqk----akhfkchichkkl~sgpglsih 53 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQK----AKHFKCHICHKKLFSGPGLSIH 53 (341)
T ss_pred eeeecccccchhhhhhhhhh----hccceeeeehhhhccCCCceee
Confidence 48899999999999998886 5789999998766555555544
No 55
>KOG2186|consensus
Probab=91.03 E-value=0.18 Score=36.27 Aligned_cols=47 Identities=15% Similarity=0.384 Sum_probs=32.3
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhhh
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGEI 84 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~c 84 (135)
|.|..||.....+. +..|+..-.+ .-|.|-.|++.|-+ .....|..|
T Consensus 4 FtCnvCgEsvKKp~-vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kC 50 (276)
T KOG2186|consen 4 FTCNVCGESVKKPQ-VEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKC 50 (276)
T ss_pred Eehhhhhhhccccc-hHHHHHhccC-CeeEEeeccccccc-chhhhhhhh
Confidence 67888887766543 5567765444 57788888888877 566677765
No 56
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.05 E-value=0.16 Score=35.93 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=29.9
Q ss_pred CCceeCccccccccChhhHHhhhcc---c-------CCCcc-----eecCCCCCCCCCh
Q psy1793 32 LKEFQCSVCAKYFHRAADLKRHSIC---H-------TGLKP-----YACQDVERSPPVM 75 (135)
Q Consensus 32 ~~~~~C~~C~k~f~~~~~l~~H~~~---h-------~~~k~-----~~C~~C~k~f~~~ 75 (135)
++...|++|++.|..........++ . .+..| ..|+.||.+|...
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 3568999999999887655444432 2 22333 4799999988644
No 57
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=88.26 E-value=0.32 Score=33.02 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=20.6
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCC
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVER 70 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k 70 (135)
+-|.|.+||. ++.|+-|-.||+||-
T Consensus 133 ~~~vC~vCGy-------------~~~ge~P~~CPiCga 157 (166)
T COG1592 133 KVWVCPVCGY-------------THEGEAPEVCPICGA 157 (166)
T ss_pred CEEEcCCCCC-------------cccCCCCCcCCCCCC
Confidence 3699999984 466788999999984
No 58
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=87.84 E-value=0.33 Score=30.58 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=23.4
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCCh
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVM 75 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~ 75 (135)
..|..||+.|.- ....|..|+.||..|.-.
T Consensus 10 R~Cp~CG~kFYD-----------Lnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYD-----------LNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhcc-----------CCCCCccCCCCCCccCcc
Confidence 689999988764 234688999999998655
No 59
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=87.59 E-value=0.94 Score=30.00 Aligned_cols=41 Identities=7% Similarity=0.148 Sum_probs=27.6
Q ss_pred cCCCCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCC
Q psy1793 29 YEMLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 29 h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
-.+..-|.|+.|+..|.....+.. ... ...|.|+.||....
T Consensus 94 e~~~~~Y~Cp~C~~~y~~~ea~~~---~d~-~~~f~Cp~Cg~~l~ 134 (147)
T smart00531 94 ETNNAYYKCPNCQSKYTFLEANQL---LDM-DGTFTCPRCGEELE 134 (147)
T ss_pred ccCCcEEECcCCCCEeeHHHHHHh---cCC-CCcEECCCCCCEEE
Confidence 345567999999999986554332 111 23499999998653
No 60
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=87.30 E-value=0.5 Score=23.59 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=23.5
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
+.|+.|+..|....... ......+.|+.|+..|.
T Consensus 3 ~~CP~C~~~~~v~~~~~-----~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQL-----GANGGKVRCGKCGHVWY 36 (38)
T ss_pred EECCCCCCEEEeCHHHc-----CCCCCEEECCCCCCEEE
Confidence 67999999887765432 12223678999998764
No 61
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=87.15 E-value=0.55 Score=23.51 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=24.3
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
..|+.|+..|.-... ++-.+....+|+.|+..|.
T Consensus 3 i~CP~C~~~f~v~~~-----~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDD-----KLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHH-----HcccCCcEEECCCCCcEee
Confidence 468999988887654 2334456889999988774
No 62
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=86.89 E-value=0.81 Score=30.75 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=32.1
Q ss_pred HHHHHHhhcCCCCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCC
Q psy1793 21 EREEKRRKYEMLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 21 ~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
.|+.-.....+..-|.|+.|+..|+....+. .-|.|+.||....
T Consensus 96 ~lk~~l~~e~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 96 KLREKLEFETNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAMLD 139 (158)
T ss_pred HHHHHHhhccCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEee
Confidence 3444444455566799999999998877664 3799999998754
No 63
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=86.46 E-value=0.26 Score=33.05 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=21.9
Q ss_pred eeCccccccccC-hhhHHhhhc-ccCCCcceecCCCCCCCCChHh
Q psy1793 35 FQCSVCAKYFHR-AADLKRHSI-CHTGLKPYACQDVERSPPVMLM 77 (135)
Q Consensus 35 ~~C~~C~k~f~~-~~~l~~H~~-~h~~~k~~~C~~C~k~f~~~~~ 77 (135)
+.|+.||..+.. .++. -|. -..-.+.++|+.||+.|.....
T Consensus 1 m~cp~c~~~~~~~~~s~--~~~~~~~~~~~~~c~~c~~~f~~~e~ 43 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSR--PAEDGNAIRRRRECLACGKRFTTFER 43 (154)
T ss_pred CcCCCCCCCCCEeEecc--ccCCCCceeeeeeccccCCcceEeEe
Confidence 368999865421 1110 010 0111234899999999975543
No 64
>KOG4173|consensus
Probab=85.56 E-value=0.54 Score=32.98 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=9.3
Q ss_pred eCccccccccChhhHHhhh
Q psy1793 36 QCSVCAKYFHRAADLKRHS 54 (135)
Q Consensus 36 ~C~~C~k~f~~~~~l~~H~ 54 (135)
.|.+|.+.|....-|..|+
T Consensus 108 sCs~C~r~~Pt~hLLd~HI 126 (253)
T KOG4173|consen 108 SCSFCKRAFPTGHLLDAHI 126 (253)
T ss_pred hhHHHHHhCCchhhhhHHH
Confidence 4555555555544444443
No 65
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=85.50 E-value=0.75 Score=24.08 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=21.2
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
.|.|..||..|... ...+..|+.||....
T Consensus 2 ~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~rIl 30 (44)
T smart00659 2 IYICGECGRENEIK-----------SKDVVRCRECGYRIL 30 (44)
T ss_pred EEECCCCCCEeecC-----------CCCceECCCCCceEE
Confidence 48999999876643 245789999986543
No 66
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=85.12 E-value=0.4 Score=26.37 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=20.3
Q ss_pred cCCCcceecCCCCCCCCChHhHHHHhh
Q psy1793 57 HTGLKPYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 57 h~~~k~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
--|+.-+.|+-|+..|..+....+|..
T Consensus 12 RDGE~~lrCPRC~~~FR~~K~Y~RHVN 38 (65)
T COG4049 12 RDGEEFLRCPRCGMVFRRRKDYIRHVN 38 (65)
T ss_pred cCCceeeeCCchhHHHHHhHHHHHHhh
Confidence 456677788888888887777777765
No 67
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=85.07 E-value=0.84 Score=25.45 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=21.2
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCC
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVER 70 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k 70 (135)
..|.|+.||.....+..- .-....+|.|+.||-
T Consensus 26 v~F~CPnCGe~~I~Rc~~-----CRk~g~~Y~Cp~CGF 58 (61)
T COG2888 26 VKFPCPNCGEVEIYRCAK-----CRKLGNPYRCPKCGF 58 (61)
T ss_pred eEeeCCCCCceeeehhhh-----HHHcCCceECCCcCc
Confidence 348899998765554332 223356899999863
No 68
>KOG2785|consensus
Probab=85.02 E-value=1.2 Score=33.96 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=42.9
Q ss_pred CCCceeCccccccccChhhHHhhhcccCCC-----------------------cceecCCCC---CCCCChHhHHHHhh
Q psy1793 31 MLKEFQCSVCAKYFHRAADLKRHSICHTGL-----------------------KPYACQDVE---RSPPVMLMVVKTGE 83 (135)
Q Consensus 31 ~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~-----------------------k~~~C~~C~---k~f~~~~~L~~H~~ 83 (135)
...|-.|-.|++.+..-..-..||..++|- .-|.|-.|+ +.|.+....+.||.
T Consensus 163 e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~ 241 (390)
T KOG2785|consen 163 ELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMR 241 (390)
T ss_pred ccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHh
Confidence 345677999999999888888999876543 236788888 99999999999988
No 69
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=84.62 E-value=1 Score=30.87 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=31.1
Q ss_pred HHHHHhhcCCCCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCCh
Q psy1793 22 REEKRRKYEMLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVM 75 (135)
Q Consensus 22 l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~ 75 (135)
|+.-...-....-|.|+.|+..|.....+. .-|.|+.||......
T Consensus 105 lk~~l~~e~~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L~~~ 149 (178)
T PRK06266 105 LKEQLEEEENNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEMLEEY 149 (178)
T ss_pred HHHHhhhccCCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCCeec
Confidence 333333344456699999999988776542 379999999876543
No 70
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=84.39 E-value=1.1 Score=22.33 Aligned_cols=33 Identities=9% Similarity=0.230 Sum_probs=23.8
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSP 72 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f 72 (135)
..|+.|+..|.-.... +-......+|..|+..|
T Consensus 3 i~Cp~C~~~y~i~d~~-----ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEK-----IPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHH-----CCCCCcEEECCCCCCEe
Confidence 5788999888776643 33445578999998876
No 71
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=84.39 E-value=0.76 Score=22.58 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=17.8
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~ 71 (135)
.|.|..||..+... ..|..|+.|+..
T Consensus 2 ~~~C~~CG~i~~g~------------~~p~~CP~Cg~~ 27 (34)
T cd00729 2 VWVCPVCGYIHEGE------------EAPEKCPICGAP 27 (34)
T ss_pred eEECCCCCCEeECC------------cCCCcCcCCCCc
Confidence 48899998543321 257799999864
No 72
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=84.26 E-value=0.35 Score=25.96 Aligned_cols=30 Identities=17% Similarity=0.500 Sum_probs=20.9
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVER 70 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k 70 (135)
.|.|..||..|.....+ .. ..+..|+.||.
T Consensus 5 ey~C~~Cg~~fe~~~~~------~~-~~~~~CP~Cg~ 34 (52)
T TIGR02605 5 EYRCTACGHRFEVLQKM------SD-DPLATCPECGG 34 (52)
T ss_pred EEEeCCCCCEeEEEEec------CC-CCCCCCCCCCC
Confidence 48999999988754322 11 34567999986
No 73
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=83.68 E-value=0.52 Score=24.71 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=22.1
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCC
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
..|.|..||..|..... ...+.|+.||..+.
T Consensus 2 ~~y~C~~CG~~~~~~~~----------~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 2 AEYKCARCGREVELDEY----------GTGVRCPYCGYRIL 32 (46)
T ss_pred CEEECCCCCCEEEECCC----------CCceECCCCCCeEE
Confidence 35899999987765332 11689999997654
No 74
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=82.25 E-value=0.5 Score=23.82 Aligned_cols=31 Identities=16% Similarity=0.442 Sum_probs=21.4
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~ 71 (135)
.|.|..||..|...... .. .....|+.||..
T Consensus 5 ~y~C~~Cg~~fe~~~~~------~~-~~~~~CP~Cg~~ 35 (41)
T smart00834 5 EYRCEDCGHTFEVLQKI------SD-DPLATCPECGGD 35 (41)
T ss_pred EEEcCCCCCEEEEEEec------CC-CCCCCCCCCCCc
Confidence 48999999988754432 11 456679999874
No 75
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.40 E-value=2 Score=32.62 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=7.7
Q ss_pred ccCchhHHHHHhh
Q psy1793 87 AENRHKTVENHQK 99 (135)
Q Consensus 87 ~f~~~~~l~~H~~ 99 (135)
.|...--|..|+.
T Consensus 290 vf~~~~el~~h~~ 302 (493)
T COG5236 290 VFPYHTELLEHLT 302 (493)
T ss_pred EeccHHHHHHHHH
Confidence 5566666666644
No 76
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=81.30 E-value=0.55 Score=25.86 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=24.0
Q ss_pred cCCCCceeCccccccccChhhHHhhhcc
Q psy1793 29 YEMLKEFQCSVCAKYFHRAADLKRHSIC 56 (135)
Q Consensus 29 h~~~~~~~C~~C~k~f~~~~~l~~H~~~ 56 (135)
.-|+.-+.|+-|+..|....++.+|...
T Consensus 12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNK 39 (65)
T COG4049 12 RDGEEFLRCPRCGMVFRRRKDYIRHVNK 39 (65)
T ss_pred cCCceeeeCCchhHHHHHhHHHHHHhhH
Confidence 4467778999999999999999999753
No 77
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=80.87 E-value=1.6 Score=20.03 Aligned_cols=19 Identities=11% Similarity=0.044 Sum_probs=13.4
Q ss_pred ecCCCCCCCCChHhHHHHhh
Q psy1793 64 ACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 64 ~C~~C~k~f~~~~~L~~H~~ 83 (135)
.|++|++.+ ....++.|..
T Consensus 3 ~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREV-PENLINSHLD 21 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHH
Confidence 588888887 5566777764
No 78
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=80.53 E-value=0.95 Score=23.30 Aligned_cols=30 Identities=20% Similarity=0.548 Sum_probs=21.7
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVER 70 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k 70 (135)
.|.|..||..|..... +.. ..+..|+.||.
T Consensus 5 ey~C~~Cg~~fe~~~~------~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 5 EYRCEECGHEFEVLQS------ISE-DDPVPCPECGS 34 (42)
T ss_pred EEEeCCCCCEEEEEEE------cCC-CCCCcCCCCCC
Confidence 4899999988875443 222 56778999987
No 79
>KOG1146|consensus
Probab=80.14 E-value=0.86 Score=40.03 Aligned_cols=64 Identities=8% Similarity=0.123 Sum_probs=49.7
Q ss_pred CccccccccChhhHHhhhcc-cCCCcceecCCCCCCCCChHhHHHHhh--------------------------------
Q psy1793 37 CSVCAKYFHRAADLKRHSIC-HTGLKPYACQDVERSPPVMLMVVKTGE-------------------------------- 83 (135)
Q Consensus 37 C~~C~k~f~~~~~l~~H~~~-h~~~k~~~C~~C~k~f~~~~~L~~H~~-------------------------------- 83 (135)
|.-|+..+.+...+..|+.. ++-.+-|.|+.|+..|.....|..|++
T Consensus 439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p 518 (1406)
T KOG1146|consen 439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKP 518 (1406)
T ss_pred ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCc
Confidence 44466666666667777653 666688999999999999999999987
Q ss_pred -----hCCccCchhHHHHHhhh
Q psy1793 84 -----IGIAENRHKTVENHQKA 100 (135)
Q Consensus 84 -----c~~~f~~~~~l~~H~~~ 100 (135)
|..+++....|.+|+..
T Consensus 519 ~~C~~C~~stttng~LsihlqS 540 (1406)
T KOG1146|consen 519 YPCRACNYSTTTNGNLSIHLQS 540 (1406)
T ss_pred ccceeeeeeeecchHHHHHHHH
Confidence 67777788888888653
No 80
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=78.27 E-value=1.5 Score=28.41 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=24.1
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHh
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLM 77 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~ 77 (135)
..|..||+.|.- ....|..|+.||..|.....
T Consensus 10 r~Cp~cg~kFYD-----------Lnk~p~vcP~cg~~~~~~~~ 41 (129)
T TIGR02300 10 RICPNTGSKFYD-----------LNRRPAVSPYTGEQFPPEEA 41 (129)
T ss_pred ccCCCcCccccc-----------cCCCCccCCCcCCccCcchh
Confidence 689999988763 23468899999998865533
No 81
>PHA00626 hypothetical protein
Probab=78.16 E-value=1.7 Score=23.93 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=12.5
Q ss_pred CcceecCCCCCCCCCh
Q psy1793 60 LKPYACQDVERSPPVM 75 (135)
Q Consensus 60 ~k~~~C~~C~k~f~~~ 75 (135)
...|.|+.||..|+..
T Consensus 21 snrYkCkdCGY~ft~~ 36 (59)
T PHA00626 21 SDDYVCCDCGYNDSKD 36 (59)
T ss_pred CcceEcCCCCCeechh
Confidence 5689999999888654
No 82
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=76.35 E-value=3.8 Score=29.93 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=50.2
Q ss_pred cCCCCceeCccccccccChhhHHhhhcc--cCCCcceecCCCCCCCCChHhHHHHhhhCCccCchhHHHHHhhhccCCCC
Q psy1793 29 YEMLKEFQCSVCAKYFHRAADLKRHSIC--HTGLKPYACQDVERSPPVMLMVVKTGEIGIAENRHKTVENHQKAVKIPPT 106 (135)
Q Consensus 29 h~~~~~~~C~~C~k~f~~~~~l~~H~~~--h~~~k~~~C~~C~k~f~~~~~L~~H~~c~~~f~~~~~l~~H~~~h~~~~~ 106 (135)
.+|.+.|.|..|...+-....| .|+.+ -.....|+|..|++.= ...-++|-..|-.--....-.+. ....+
T Consensus 137 ~hGGrif~CsfC~~flCEDDQF-EHQAsCQvLe~E~~KC~SCNrlG-----q~sCLRCK~cfCddHvrrKg~ky-~k~k~ 209 (314)
T PF06524_consen 137 DHGGRIFKCSFCDNFLCEDDQF-EHQASCQVLESETFKCQSCNRLG-----QYSCLRCKICFCDDHVRRKGFKY-EKGKP 209 (314)
T ss_pred cCCCeEEEeecCCCeeeccchh-hhhhhhhhhhccccccccccccc-----chhhhheeeeehhhhhhhccccc-ccCCC
Confidence 3455667777776544433333 33322 2334467777776541 11223444444322111111122 23367
Q ss_pred CCCCCCCCCCccccCCCccchhcccC
Q psy1793 107 ETEGQTHGPMAETLDLGSRDLKKCFG 132 (135)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~~~~~c~g 132 (135)
++|+.++....++-+|++.....=||
T Consensus 210 ~PCPKCg~et~eTkdLSmStR~hkyG 235 (314)
T PF06524_consen 210 IPCPKCGYETQETKDLSMSTRSHKYG 235 (314)
T ss_pred CCCCCCCCcccccccceeeeecchhc
Confidence 88888888888888887765544444
No 83
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=76.26 E-value=2.3 Score=23.70 Aligned_cols=33 Identities=21% Similarity=0.585 Sum_probs=19.2
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCC
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVER 70 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k 70 (135)
-.|.|+.||.....+-.- --....+|.|+.||.
T Consensus 24 ~~F~CPnCG~~~I~RC~~-----CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 24 VKFLCPNCGEVIIYRCEK-----CRKQSNPYTCPKCGF 56 (59)
T ss_pred CEeeCCCCCCeeEeechh-----HHhcCCceECCCCCC
Confidence 348888888763333211 112246888888863
No 84
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=75.58 E-value=2.1 Score=22.99 Aligned_cols=30 Identities=13% Similarity=0.362 Sum_probs=20.8
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCCCC
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSP 72 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f 72 (135)
..|.|..||+.|.. ........|+.||...
T Consensus 5 ~~Y~C~~Cg~~~~~----------~~~~~~irCp~Cg~rI 34 (49)
T COG1996 5 MEYKCARCGREVEL----------DQETRGIRCPYCGSRI 34 (49)
T ss_pred EEEEhhhcCCeeeh----------hhccCceeCCCCCcEE
Confidence 45999999998721 1224567899998653
No 85
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=75.47 E-value=1.8 Score=21.05 Aligned_cols=28 Identities=14% Similarity=0.352 Sum_probs=17.3
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
|.|..|+..+... ...+..|+.||....
T Consensus 1 Y~C~~Cg~~~~~~-----------~~~~irC~~CG~RIl 28 (32)
T PF03604_consen 1 YICGECGAEVELK-----------PGDPIRCPECGHRIL 28 (32)
T ss_dssp EBESSSSSSE-BS-----------TSSTSSBSSSS-SEE
T ss_pred CCCCcCCCeeEcC-----------CCCcEECCcCCCeEE
Confidence 6788888765521 134678999986543
No 86
>PF14353 CpXC: CpXC protein
Probab=75.10 E-value=1.5 Score=28.18 Aligned_cols=47 Identities=13% Similarity=0.226 Sum_probs=26.0
Q ss_pred eeCccccccccChhhHHhh--------hcccCC-CcceecCCCCCCCCChHhHHHH
Q psy1793 35 FQCSVCAKYFHRAADLKRH--------SICHTG-LKPYACQDVERSPPVMLMVVKT 81 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H--------~~~h~~-~k~~~C~~C~k~f~~~~~L~~H 81 (135)
..|+.|+..|......... .++-.| --.|.|+.||..|.-...+.-|
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~ 57 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYH 57 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEE
Confidence 3688898887643221110 011122 2358999999988655444433
No 87
>KOG2186|consensus
Probab=72.92 E-value=2.1 Score=31.01 Aligned_cols=51 Identities=25% Similarity=0.494 Sum_probs=38.8
Q ss_pred hhhHHhhCHHHHHHHHhhcCCCCceeCccccccccChhhHHhhhcccCCCcce
Q psy1793 11 TLTQEEIEAREREEKRRKYEMLKEFQCSVCAKYFHRAADLKRHSICHTGLKPY 63 (135)
Q Consensus 11 ~~~~~~~~~~~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~ 63 (135)
.++.+....-.+..|+..-.+ .-|.|-.|++.|-. ..+..|...-+....|
T Consensus 7 nvCgEsvKKp~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kCITEaQKY 57 (276)
T KOG2186|consen 7 NVCGESVKKPQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKCITEAQKY 57 (276)
T ss_pred hhhhhhccccchHHHHHhccC-CeeEEeeccccccc-chhhhhhhhcchHHHh
Confidence 456677777788889876666 56999999999998 7788887765554444
No 88
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=71.91 E-value=2.5 Score=25.47 Aligned_cols=32 Identities=9% Similarity=0.241 Sum_probs=22.2
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCC
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPV 74 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~ 74 (135)
..|.|+.|++. .+.++ +..-+.|..|+..|.-
T Consensus 34 ~~~~Cp~C~~~--------~VkR~--a~GIW~C~kCg~~fAG 65 (89)
T COG1997 34 AKHVCPFCGRT--------TVKRI--ATGIWKCRKCGAKFAG 65 (89)
T ss_pred cCCcCCCCCCc--------ceeee--ccCeEEcCCCCCeecc
Confidence 46999999875 12222 2346899999998864
No 89
>KOG2482|consensus
Probab=71.64 E-value=8.1 Score=29.41 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=28.6
Q ss_pred hhhhhhhHHhhCHHHHHHHHhhcCCC-CceeCcccccccc-ChhhHHhhhc
Q psy1793 7 KELITLTQEEIEAREREEKRRKYEML-KEFQCSVCAKYFH-RAADLKRHSI 55 (135)
Q Consensus 7 ~e~~~~~~~~~~~~~l~~h~~~h~~~-~~~~C~~C~k~f~-~~~~l~~H~~ 55 (135)
.+.-+..++..=...|+.+|+-..+. ...+|-.|..-+. .++.+..|+.
T Consensus 116 ~~Lrqrlqe~rL~eaLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf 166 (423)
T KOG2482|consen 116 RLLRQRLQENRLKEALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLF 166 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHH
Confidence 33333344444445677787766543 3457888877554 4566667764
No 90
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=71.14 E-value=3.6 Score=21.09 Aligned_cols=24 Identities=8% Similarity=-0.036 Sum_probs=12.9
Q ss_pred CCcceecCCCCCCCCCh----HhHHHHh
Q psy1793 59 GLKPYACQDVERSPPVM----LMVVKTG 82 (135)
Q Consensus 59 ~~k~~~C~~C~k~f~~~----~~L~~H~ 82 (135)
+.....|..|++.+... +.|.+|+
T Consensus 13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL 40 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYSSGGTSNLKRHL 40 (45)
T ss_dssp CSS-EEETTTTEE-----SSTHHHHHHH
T ss_pred CcCeEEeCCCCeEEeeCCCcHHHHHHhh
Confidence 34556788888777653 4666665
No 91
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=71.13 E-value=2.9 Score=22.19 Aligned_cols=23 Identities=4% Similarity=-0.015 Sum_probs=14.3
Q ss_pred cceecCCCCCCCCCh-----HhHHHHhh
Q psy1793 61 KPYACQDVERSPPVM-----LMVVKTGE 83 (135)
Q Consensus 61 k~~~C~~C~k~f~~~-----~~L~~H~~ 83 (135)
.--.|..|++.++.. +.|.+|++
T Consensus 17 ~~a~C~~C~~~l~~~~~~gTs~L~rHl~ 44 (50)
T smart00614 17 QRAKCKYCGKKLSRSSKGGTSNLRRHLR 44 (50)
T ss_pred eEEEecCCCCEeeeCCCCCcHHHHHHHH
Confidence 345788888887654 34555544
No 92
>KOG2482|consensus
Probab=70.87 E-value=6.2 Score=30.02 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.0
Q ss_pred eeCccccccccChhhHHhhhcc
Q psy1793 35 FQCSVCAKYFHRAADLKRHSIC 56 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~ 56 (135)
+.|-.|.+.|..+..|..||+.
T Consensus 196 ~~CLyCekifrdkntLkeHMrk 217 (423)
T KOG2482|consen 196 LRCLYCEKIFRDKNTLKEHMRK 217 (423)
T ss_pred heeeeeccccCCcHHHHHHHHh
Confidence 6888899999999999999864
No 93
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=70.73 E-value=1.5 Score=33.01 Aligned_cols=49 Identities=31% Similarity=0.522 Sum_probs=42.3
Q ss_pred CHHHHHHHHh--hcCCC--CceeCc--cccccccChhhHHhhhcccCCCcceecC
Q psy1793 18 EAREREEKRR--KYEML--KEFQCS--VCAKYFHRAADLKRHSICHTGLKPYACQ 66 (135)
Q Consensus 18 ~~~~l~~h~~--~h~~~--~~~~C~--~C~k~f~~~~~l~~H~~~h~~~k~~~C~ 66 (135)
....+..|.+ .|.++ +++.|. .|++.|.+...+..|..+|++..++.+.
T Consensus 301 ~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (467)
T COG5048 301 RSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK 355 (467)
T ss_pred ccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence 4456778888 79999 999999 7999999999999999999988877664
No 94
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=66.63 E-value=1.7 Score=20.43 Aligned_cols=19 Identities=37% Similarity=0.800 Sum_probs=9.5
Q ss_pred eeCccccccccChhhHHhhh
Q psy1793 35 FQCSVCAKYFHRAADLKRHS 54 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~ 54 (135)
|.|-.|++.|. ...++.|.
T Consensus 1 ~sCiDC~~~F~-~~~y~~Ht 19 (28)
T PF08790_consen 1 FSCIDCSKDFD-GDSYKSHT 19 (28)
T ss_dssp EEETTTTEEEE-GGGTTT--
T ss_pred CeeecCCCCcC-cCCcCCCC
Confidence 45667777773 33344443
No 95
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=64.04 E-value=2.8 Score=24.41 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=21.3
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecC--CCCCCCCCh
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQ--DVERSPPVM 75 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~--~C~k~f~~~ 75 (135)
+.|+.||..-....+-... ..+.+.-++|. .||..|...
T Consensus 2 m~CP~Cg~~a~irtSr~~s--~~~~~~Y~qC~N~eCg~tF~t~ 42 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYIT--DTTKERYHQCQNVNCSATFITY 42 (72)
T ss_pred ccCCCCCCccEEEEChhcC--hhhheeeeecCCCCCCCEEEEE
Confidence 4688887654333222111 11345567887 787777543
No 96
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=62.22 E-value=5.8 Score=21.54 Aligned_cols=42 Identities=17% Similarity=0.403 Sum_probs=24.8
Q ss_pred CCceeCcc--ccccccChhhHHhhhcccCCCcceecCC----CCCCCCC
Q psy1793 32 LKEFQCSV--CAKYFHRAADLKRHSICHTGLKPYACQD----VERSPPV 74 (135)
Q Consensus 32 ~~~~~C~~--C~k~f~~~~~l~~H~~~h~~~k~~~C~~----C~k~f~~ 74 (135)
..+..|+. |...+. +..|..|....=..++..|+. |+..+.+
T Consensus 7 ~~~v~C~~~cc~~~i~-r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~ 54 (60)
T PF02176_consen 7 FRPVPCPNGCCNEMIP-RKELDDHLENECPKRPVPCPYSPYGCKERVPR 54 (60)
T ss_dssp TSEEE-TT--S-BEEE-CCCHHHHHHTTSTTSEEE-SS----S--EEEH
T ss_pred CCEeeCCCCCccccee-HHHHHHHHHccCCCCcEECCCCCCCCCCccch
Confidence 45677877 545454 467888887655567888888 8776543
No 97
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=62.04 E-value=4.7 Score=18.50 Aligned_cols=10 Identities=10% Similarity=0.102 Sum_probs=8.2
Q ss_pred ecCCCCCCCC
Q psy1793 64 ACQDVERSPP 73 (135)
Q Consensus 64 ~C~~C~k~f~ 73 (135)
.|+.||..|.
T Consensus 16 ~Cp~CG~~F~ 25 (26)
T PF10571_consen 16 FCPHCGYDFE 25 (26)
T ss_pred cCCCCCCCCc
Confidence 6888998885
No 98
>KOG2893|consensus
Probab=61.85 E-value=2.4 Score=30.59 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=30.4
Q ss_pred CcceecCCCCCCCCChHhHHHHhh--------hCCccCchhHHHHH-hhhcc
Q psy1793 60 LKPYACQDVERSPPVMLMVVKTGE--------IGIAENRHKTVENH-QKAVK 102 (135)
Q Consensus 60 ~k~~~C~~C~k~f~~~~~L~~H~~--------c~~~f~~~~~l~~H-~~~h~ 102 (135)
.||| |..|++-|-...-|..|++ |++..-.--.|..| +.+|.
T Consensus 9 ~kpw-cwycnrefddekiliqhqkakhfkchichkkl~sgpglsihcmqvhk 59 (341)
T KOG2893|consen 9 DKPW-CWYCNREFDDEKILIQHQKAKHFKCHICHKKLFSGPGLSIHCMQVHK 59 (341)
T ss_pred CCce-eeecccccchhhhhhhhhhhccceeeeehhhhccCCCceeehhhhhh
Confidence 3565 8899999999999999987 66654445555555 55554
No 99
>KOG4167|consensus
Probab=61.78 E-value=1.6 Score=36.15 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=20.4
Q ss_pred eeCccccccccChhhHHhhhcccC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHT 58 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~ 58 (135)
|.|.+|+|.|..-.++..||++|.
T Consensus 793 FpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 793 FPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred eehHHHHHHHHHHhhhhHHHHHHH
Confidence 789999999988888888888874
No 100
>KOG2593|consensus
Probab=61.39 E-value=9.8 Score=29.75 Aligned_cols=40 Identities=13% Similarity=0.392 Sum_probs=27.2
Q ss_pred CCCCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCC
Q psy1793 30 EMLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSP 72 (135)
Q Consensus 30 ~~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f 72 (135)
....-|.|+.|.+.|.....++ ..-...-.|.|..|+-..
T Consensus 124 t~~~~Y~Cp~C~kkyt~Lea~~---L~~~~~~~F~C~~C~gel 163 (436)
T KOG2593|consen 124 TNVAGYVCPNCQKKYTSLEALQ---LLDNETGEFHCENCGGEL 163 (436)
T ss_pred cccccccCCccccchhhhHHHH---hhcccCceEEEecCCCch
Confidence 3345699999999998655543 233334579999997543
No 101
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=60.60 E-value=1.1 Score=31.76 Aligned_cols=24 Identities=21% Similarity=0.677 Sum_probs=12.8
Q ss_pred CceeCccccccccChhhHHhhhcc
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSIC 56 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~ 56 (135)
..|.|..|+|.|.-...+..|+..
T Consensus 76 ~K~~C~lc~KlFkg~eFV~KHI~n 99 (214)
T PF04959_consen 76 DKWRCPLCGKLFKGPEFVRKHIFN 99 (214)
T ss_dssp EEEEE-SSS-EESSHHHHHHHHHH
T ss_pred CEECCCCCCcccCChHHHHHHHhh
Confidence 346666666666666666666543
No 102
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=60.42 E-value=5 Score=26.21 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=22.2
Q ss_pred CceeCccccccccChh---hHH--hhhccc----CCCcceecCCCCCC
Q psy1793 33 KEFQCSVCAKYFHRAA---DLK--RHSICH----TGLKPYACQDVERS 71 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~---~l~--~H~~~h----~~~k~~~C~~C~k~ 71 (135)
..+.|..||..|.... .|. .+..+| +...-+.|+.||..
T Consensus 69 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~ 116 (135)
T PRK03824 69 AVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSR 116 (135)
T ss_pred eEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCC
Confidence 4589999998887641 110 011112 11344679999854
No 103
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=59.73 E-value=5.4 Score=18.02 Aligned_cols=10 Identities=20% Similarity=0.693 Sum_probs=6.7
Q ss_pred cceecCCCCC
Q psy1793 61 KPYACQDVER 70 (135)
Q Consensus 61 k~~~C~~C~k 70 (135)
.+|.|+.||.
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 4677777763
No 104
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.71 E-value=5.5 Score=25.16 Aligned_cols=30 Identities=17% Similarity=0.030 Sum_probs=21.4
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCCh
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVM 75 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~ 75 (135)
-.|+.|++.|.. ....|..|+.||++|..+
T Consensus 10 ridPetg~KFYD-----------LNrdPiVsPytG~s~P~s 39 (129)
T COG4530 10 RIDPETGKKFYD-----------LNRDPIVSPYTGKSYPRS 39 (129)
T ss_pred ccCccccchhhc-----------cCCCccccCcccccchHH
Confidence 367788877653 235688999999999544
No 105
>KOG2231|consensus
Probab=58.54 E-value=18 Score=30.09 Aligned_cols=20 Identities=5% Similarity=-0.180 Sum_probs=9.7
Q ss_pred ecCCCCCCCCChHhHHHHhh
Q psy1793 64 ACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 64 ~C~~C~k~f~~~~~L~~H~~ 83 (135)
.|..|...|.....|.+|++
T Consensus 184 ~C~~C~~~fld~~el~rH~~ 203 (669)
T KOG2231|consen 184 LCKFCHERFLDDDELYRHLR 203 (669)
T ss_pred cchhhhhhhccHHHHHHhhc
Confidence 34444455555555555444
No 106
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=57.78 E-value=7.9 Score=27.44 Aligned_cols=26 Identities=12% Similarity=-0.096 Sum_probs=20.6
Q ss_pred CCCcceecCCCCCCCCChHhHHHHhh
Q psy1793 58 TGLKPYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 58 ~~~k~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
..+..|.|+.|+|.|........|+.
T Consensus 73 ~~~~K~~C~lc~KlFkg~eFV~KHI~ 98 (214)
T PF04959_consen 73 EDEDKWRCPLCGKLFKGPEFVRKHIF 98 (214)
T ss_dssp SSSEEEEE-SSS-EESSHHHHHHHHH
T ss_pred HcCCEECCCCCCcccCChHHHHHHHh
Confidence 45668999999999999999999876
No 107
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=56.78 E-value=6 Score=22.28 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=11.8
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSP 72 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f 72 (135)
-.|..|++.|.. ..+.+.|..||..|
T Consensus 10 ~~C~~C~~~F~~------------~~rrhhCr~CG~~v 35 (69)
T PF01363_consen 10 SNCMICGKKFSL------------FRRRHHCRNCGRVV 35 (69)
T ss_dssp SB-TTT--B-BS------------SS-EEE-TTT--EE
T ss_pred CcCcCcCCcCCC------------ceeeEccCCCCCEE
Confidence 468888888853 14566788887766
No 108
>KOG3408|consensus
Probab=55.57 E-value=7.3 Score=25.03 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=20.4
Q ss_pred CCCceeCccccccccChhhHHhhhcc
Q psy1793 31 MLKEFQCSVCAKYFHRAADLKRHSIC 56 (135)
Q Consensus 31 ~~~~~~C~~C~k~f~~~~~l~~H~~~ 56 (135)
|...|-|-.|.+.|.....|..|.++
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHhc
Confidence 44558888888888888888888764
No 109
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=54.80 E-value=5.2 Score=19.08 Aligned_cols=24 Identities=13% Similarity=0.501 Sum_probs=10.0
Q ss_pred eCccccccccChhhHHhhhcccCCCcceecCCCCC
Q psy1793 36 QCSVCAKYFHRAADLKRHSICHTGLKPYACQDVER 70 (135)
Q Consensus 36 ~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k 70 (135)
+|+.|+..+.. ...-.|.|+.|+.
T Consensus 4 ~Cp~C~se~~y-----------~D~~~~vCp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY-----------EDGELLVCPECGH 27 (30)
T ss_dssp --TTT-----E-----------E-SSSEEETTTTE
T ss_pred CCCCCCCccee-----------ccCCEEeCCcccc
Confidence 46777665443 2344677777763
No 110
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=54.12 E-value=7.1 Score=24.75 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=18.0
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~ 71 (135)
...|..|+..|..... .+.||.||..
T Consensus 70 ~~~C~~Cg~~~~~~~~------------~~~CP~Cgs~ 95 (115)
T TIGR00100 70 ECECEDCSEEVSPEID------------LYRCPKCHGI 95 (115)
T ss_pred EEEcccCCCEEecCCc------------CccCcCCcCC
Confidence 4789999877665321 4679999854
No 111
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=53.44 E-value=7 Score=25.54 Aligned_cols=27 Identities=44% Similarity=0.763 Sum_probs=16.0
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcc
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKP 62 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~ 62 (135)
.-..|-+||+.|.. |.+|...|.|-.|
T Consensus 71 d~i~clecGk~~k~---LkrHL~~~~gltp 97 (132)
T PF05443_consen 71 DYIICLECGKKFKT---LKRHLRTHHGLTP 97 (132)
T ss_dssp S-EE-TBT--EESB---HHHHHHHTT-S-H
T ss_pred CeeEEccCCcccch---HHHHHHHccCCCH
Confidence 34689999999874 5788888866544
No 112
>KOG4173|consensus
Probab=52.34 E-value=6.2 Score=27.84 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=52.8
Q ss_pred CceeCcc--ccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhh------------------------hCC
Q psy1793 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE------------------------IGI 86 (135)
Q Consensus 33 ~~~~C~~--C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~------------------------c~~ 86 (135)
..+.|.+ |...|.....+..|-.+-++ -.|..|.+.|....-|..|+- |..
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~ 154 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTE 154 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhh
Confidence 3477876 77778877777777544232 279999999999988888854 899
Q ss_pred ccCchhHHHHH-hhhccCCCC
Q psy1793 87 AENRHKTVENH-QKAVKIPPT 106 (135)
Q Consensus 87 ~f~~~~~l~~H-~~~h~~~~~ 106 (135)
.|+++..-+.| ++.|.-+..
T Consensus 155 KFkT~r~RkdH~I~~Hk~Pa~ 175 (253)
T KOG4173|consen 155 KFKTSRDRKDHMIRMHKYPAD 175 (253)
T ss_pred hhhhhhhhhhHHHHhccCCcc
Confidence 99999999999 445654443
No 113
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=51.47 E-value=10 Score=25.42 Aligned_cols=34 Identities=24% Similarity=0.647 Sum_probs=18.9
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCCC
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~ 71 (135)
-+|.|. |+..|.+. .+|-.+-.|+ .|.|..|+-.
T Consensus 116 ~~Y~C~-C~q~~l~~---RRhn~~~~g~-~YrC~~C~gk 149 (156)
T COG3091 116 YPYRCQ-CQQHYLRI---RRHNTVRRGE-VYRCGKCGGK 149 (156)
T ss_pred eeEEee-cCCccchh---hhcccccccc-eEEeccCCce
Confidence 356777 77665432 2333344455 6777777643
No 114
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=50.33 E-value=8.5 Score=17.02 Aligned_cols=7 Identities=14% Similarity=0.615 Sum_probs=3.7
Q ss_pred cCCCCCC
Q psy1793 65 CQDVERS 71 (135)
Q Consensus 65 C~~C~k~ 71 (135)
|+.||..
T Consensus 16 C~~CG~~ 22 (23)
T PF13240_consen 16 CPNCGTP 22 (23)
T ss_pred hhhhCCc
Confidence 5555543
No 115
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.85 E-value=4.4 Score=29.05 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=27.8
Q ss_pred CCceeCccccccccChhhHHhhhcccCCC----------cc-----eecCCCCCC
Q psy1793 32 LKEFQCSVCAKYFHRAADLKRHSICHTGL----------KP-----YACQDVERS 71 (135)
Q Consensus 32 ~~~~~C~~C~k~f~~~~~l~~H~~~h~~~----------k~-----~~C~~C~k~ 71 (135)
++.+.|++|+..|.....+..-.++-.|. .| +.|+.|..+
T Consensus 17 kk~ieCPvC~tkFkkeev~tgsiRiiagDld~~lkygninP~fY~VvvCP~C~yA 71 (267)
T COG1655 17 KKTIECPVCNTKFKKEEVKTGSIRIIAGDLDFFLKYGNINPYFYDVVVCPICYYA 71 (267)
T ss_pred hceeccCcccchhhhhheeccceeEecccccceeeccccCCceeEEEEcchhhHH
Confidence 46689999999999877665555554433 12 479999754
No 116
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=49.59 E-value=9.6 Score=24.07 Aligned_cols=25 Identities=12% Similarity=0.277 Sum_probs=16.9
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVER 70 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k 70 (135)
...|..|+..|.... ..+.|+.||.
T Consensus 70 ~~~C~~Cg~~~~~~~------------~~~~CP~Cgs 94 (113)
T PRK12380 70 QAWCWDCSQVVEIHQ------------HDAQCPHCHG 94 (113)
T ss_pred EEEcccCCCEEecCC------------cCccCcCCCC
Confidence 378999987665432 3456999984
No 117
>KOG0978|consensus
Probab=49.43 E-value=4.7 Score=33.46 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=27.8
Q ss_pred eeCccccccccChhhHH-hhh------cccCCCcceecCCCCCCCCChHhHHHH
Q psy1793 35 FQCSVCAKYFHRAADLK-RHS------ICHTGLKPYACQDVERSPPVMLMVVKT 81 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~-~H~------~~h~~~k~~~C~~C~k~f~~~~~L~~H 81 (135)
..|+.|...|....-.. .|. ..-...+--.||.|+.+|...+-+..|
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 68999886665432211 111 111233456899999999887765544
No 118
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=49.14 E-value=11 Score=19.07 Aligned_cols=15 Identities=7% Similarity=-0.002 Sum_probs=12.2
Q ss_pred ceecCCCCCCCCChH
Q psy1793 62 PYACQDVERSPPVML 76 (135)
Q Consensus 62 ~~~C~~C~k~f~~~~ 76 (135)
||.|..|++.|-..-
T Consensus 12 ~f~C~~C~~~FC~~H 26 (39)
T smart00154 12 GFKCRHCGNLFCGEH 26 (39)
T ss_pred CeECCccCCcccccc
Confidence 899999999986553
No 119
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=48.08 E-value=16 Score=18.97 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=17.4
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVER 70 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k 70 (135)
+.|+.||.. ... .......|.|..|++
T Consensus 19 ~~CP~Cg~~--~~~-------~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGST--KHY-------RLKTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCe--eeE-------EeCCCCeEECCCCCC
Confidence 779999864 111 112267899998875
No 120
>KOG2785|consensus
Probab=47.34 E-value=15 Score=28.37 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=24.7
Q ss_pred cceecCCCCCCCCChHhHHHHhhhCCccCchhHHHHHhh
Q psy1793 61 KPYACQDVERSPPVMLMVVKTGEIGIAENRHKTVENHQK 99 (135)
Q Consensus 61 k~~~C~~C~k~f~~~~~L~~H~~c~~~f~~~~~l~~H~~ 99 (135)
-++.|..|.+.|.+...-..|+.- +.+...+.+|.+
T Consensus 67 ~~~~c~~c~k~~~s~~a~~~hl~S---k~h~~~~~~~~r 102 (390)
T KOG2785|consen 67 SVVYCEACNKSFASPKAHENHLKS---KKHVENLSNHQR 102 (390)
T ss_pred cceehHHhhccccChhhHHHHHHH---hhcchhhhhhhc
Confidence 467899999999988888888652 233344445544
No 121
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=46.97 E-value=10 Score=24.10 Aligned_cols=26 Identities=27% Similarity=0.694 Sum_probs=16.7
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcce-ecCCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPY-ACQDVERS 71 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~-~C~~C~k~ 71 (135)
.+.|..||..|..... .| .|+.||..
T Consensus 71 ~~~C~~Cg~~~~~~~~------------~~~~CP~Cgs~ 97 (117)
T PRK00564 71 ELECKDCSHVFKPNAL------------DYGVCEKCHSK 97 (117)
T ss_pred EEEhhhCCCccccCCc------------cCCcCcCCCCC
Confidence 4788899876654321 23 48888754
No 122
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=46.67 E-value=9.1 Score=23.32 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=21.1
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCC
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPV 74 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~ 74 (135)
..|.|+.|++.-.. + ...-.+.|..|++.|.-
T Consensus 34 a~y~CpfCgk~~vk--------R--~a~GIW~C~~C~~~~AG 65 (91)
T TIGR00280 34 AKYVCPFCGKKTVK--------R--GSTGIWTCRKCGAKFAG 65 (91)
T ss_pred cCccCCCCCCCceE--------E--EeeEEEEcCCCCCEEeC
Confidence 45999999864211 1 12346899999988853
No 123
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=46.32 E-value=15 Score=19.58 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=15.5
Q ss_pred eCccccccccChhhHHhhhcccCCCcceecCCCCCCCCC
Q psy1793 36 QCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPV 74 (135)
Q Consensus 36 ~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~ 74 (135)
.|..|++.|.. ..+.+.|..||+.|-.
T Consensus 4 ~C~~C~~~F~~------------~~rk~~Cr~Cg~~~C~ 30 (57)
T cd00065 4 SCMGCGKPFTL------------TRRRHHCRNCGRIFCS 30 (57)
T ss_pred cCcccCccccC------------CccccccCcCcCCcCh
Confidence 46667666653 1234566777766643
No 125
>KOG3507|consensus
Probab=46.23 E-value=11 Score=21.02 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=21.8
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChH
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVML 76 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~ 76 (135)
..|.|.+|+.-- +-.....++|.+||.....+.
T Consensus 19 miYiCgdC~~en-----------~lk~~D~irCReCG~RIlyKk 51 (62)
T KOG3507|consen 19 MIYICGDCGQEN-----------TLKRGDVIRCRECGYRILYKK 51 (62)
T ss_pred EEEEeccccccc-----------cccCCCcEehhhcchHHHHHH
Confidence 348999997531 222345789999998765443
No 126
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=44.76 E-value=28 Score=23.96 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCC
Q psy1793 21 EREEKRRKYEMLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 21 ~l~~h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
.|+.-...-....-|.|+.|.-.|+....+. . .|.|+.||....
T Consensus 100 ~Lk~~le~~~~~~~y~C~~~~~r~sfdeA~~------~---~F~Cp~Cg~~L~ 143 (176)
T COG1675 100 KLKRKLEKETENNYYVCPNCHVKYSFDEAME------L---GFTCPKCGEDLE 143 (176)
T ss_pred HHHHHHHhhccCCceeCCCCCCcccHHHHHH------h---CCCCCCCCchhh
Confidence 4444444455566799998887766554432 1 299999997653
No 127
>PF15269 zf-C2H2_7: Zinc-finger
Probab=44.66 E-value=18 Score=18.98 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=15.6
Q ss_pred eecCCCCCCCCChHhHHHHhhh
Q psy1793 63 YACQDVERSPPVMLMVVKTGEI 84 (135)
Q Consensus 63 ~~C~~C~k~f~~~~~L~~H~~c 84 (135)
|+|-.|.-...-++.|..||+.
T Consensus 21 ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeecCCcccchHHHHHHHHHH
Confidence 5666776666777778888773
No 128
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=43.96 E-value=16 Score=19.96 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=20.2
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSP 72 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f 72 (135)
+.|+.||..+...... .|+ ...|+.||..|
T Consensus 3 ~~CP~CG~~iev~~~~-------~Ge-iV~Cp~CGael 32 (54)
T TIGR01206 3 FECPDCGAEIELENPE-------LGE-LVICDECGAEL 32 (54)
T ss_pred cCCCCCCCEEecCCCc-------cCC-EEeCCCCCCEE
Confidence 6899999876543321 233 56899998765
No 129
>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.
Probab=43.67 E-value=10 Score=23.44 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=16.3
Q ss_pred hhhcccCCCcceecCCCCCCCCC
Q psy1793 52 RHSICHTGLKPYACQDVERSPPV 74 (135)
Q Consensus 52 ~H~~~h~~~k~~~C~~C~k~f~~ 74 (135)
..+..+.+ +|++|.+||.-|..
T Consensus 70 ~W~~l~~g-~~~rC~eCG~~fkL 91 (97)
T cd00924 70 IWMWLEKG-KPKRCPECGHVFKL 91 (97)
T ss_pred EEEEEeCC-CceeCCCCCcEEEE
Confidence 34555666 79999999988853
No 130
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=42.96 E-value=8.9 Score=19.66 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=9.6
Q ss_pred cceecCCCCCCCCCh
Q psy1793 61 KPYACQDVERSPPVM 75 (135)
Q Consensus 61 k~~~C~~C~k~f~~~ 75 (135)
.|+.|+.|++.|-..
T Consensus 12 ~~~~C~~C~~~FC~~ 26 (43)
T PF01428_consen 12 LPFKCKHCGKSFCLK 26 (43)
T ss_dssp SHEE-TTTS-EE-TT
T ss_pred CCeECCCCCcccCcc
Confidence 589999999988544
No 131
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=42.78 E-value=12 Score=18.89 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=14.9
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~ 71 (135)
|..|..|+.. +--...+..+.+.+.|..|+..
T Consensus 2 p~rC~~C~ay------lNp~~~~~~~~~~w~C~~C~~~ 33 (40)
T PF04810_consen 2 PVRCRRCRAY------LNPFCQFDDGGKTWICNFCGTK 33 (40)
T ss_dssp S-B-TTT--B------S-TTSEEETTTTEEEETTT--E
T ss_pred ccccCCCCCE------ECCcceEcCCCCEEECcCCCCc
Confidence 3456666532 2223345556678888888754
No 132
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=41.69 E-value=11 Score=20.16 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=22.2
Q ss_pred CCceeCccccccccChhhHHhhhcc-cCCCcceecCCCC
Q psy1793 32 LKEFQCSVCAKYFHRAADLKRHSIC-HTGLKPYACQDVE 69 (135)
Q Consensus 32 ~~~~~C~~C~k~f~~~~~l~~H~~~-h~~~k~~~C~~C~ 69 (135)
++++.|..||..|...+.=+..-.- -....|-.|+.|-
T Consensus 2 Dk~l~C~dCg~~FvfTa~EQ~fy~eKgf~n~p~RC~~CR 40 (49)
T PF13451_consen 2 DKTLTCKDCGAEFVFTAGEQKFYAEKGFDNEPKRCPSCR 40 (49)
T ss_pred CeeEEcccCCCeEEEehhHHHHHHhcCCcCCCccCHHHH
Confidence 4678899999988876543332211 0112466677663
No 133
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=41.67 E-value=20 Score=18.26 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=16.3
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSP 72 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f 72 (135)
|.|+.|+.... ......--+.|..||...
T Consensus 1 m~Cp~Cg~~~~---------~~D~~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 1 MKCPNCGSKEI---------VFDPERGELVCPNCGLVL 29 (43)
T ss_dssp ESBTTTSSSEE---------EEETTTTEEEETTT-BBE
T ss_pred CCCcCCcCCce---------EEcCCCCeEECCCCCCEe
Confidence 56888876531 122333456888887653
No 134
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=41.38 E-value=26 Score=26.23 Aligned_cols=62 Identities=13% Similarity=0.151 Sum_probs=31.9
Q ss_pred hhhhHHhhCHHHHHHHHhhcC---CCCceeCccccccccChhhHHhhhcc-cCC-CcceecCCCCCCCC
Q psy1793 10 ITLTQEEIEAREREEKRRKYE---MLKEFQCSVCAKYFHRAADLKRHSIC-HTG-LKPYACQDVERSPP 73 (135)
Q Consensus 10 ~~~~~~~~~~~~l~~h~~~h~---~~~~~~C~~C~k~f~~~~~l~~H~~~-h~~-~k~~~C~~C~k~f~ 73 (135)
.....+......|..++.... ....|.|..|+..=.. .++.+.+. ..+ ..-|.|..||..+.
T Consensus 231 ~k~~~e~~~ke~l~~~~~~~~~~~~t~~~~C~~C~~~~~~--~~q~QtrsaDEpmT~f~~C~~Cg~~w~ 297 (299)
T TIGR01385 231 LKQEREEITKENLFEAQGAKIQKAVTDLFTCGKCKQKKCT--YYQLQTRSADEPMTTFVTCEECGNRWK 297 (299)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCcccccCCCCCCccce--EEEecccCCCCCCeEEEEcCCCCCeee
Confidence 333444445556666665432 2234899999853222 22222222 111 12379999987653
No 135
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=41.24 E-value=12 Score=23.67 Aligned_cols=27 Identities=19% Similarity=0.506 Sum_probs=17.0
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~ 71 (135)
...|..|+..|..... ..+.||.||..
T Consensus 70 ~~~C~~Cg~~~~~~~~-----------~~~~CP~Cgs~ 96 (114)
T PRK03681 70 ECWCETCQQYVTLLTQ-----------RVRRCPQCHGD 96 (114)
T ss_pred EEEcccCCCeeecCCc-----------cCCcCcCcCCC
Confidence 4789999876553221 12579999854
No 136
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=40.73 E-value=13 Score=22.67 Aligned_cols=32 Identities=13% Similarity=0.450 Sum_probs=21.2
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCC
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPV 74 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~ 74 (135)
..|.|+.|++.-.. -...-.+.|..|++.|.-
T Consensus 35 a~y~CpfCgk~~vk----------R~a~GIW~C~~C~~~~AG 66 (90)
T PTZ00255 35 AKYFCPFCGKHAVK----------RQAVGIWRCKGCKKTVAG 66 (90)
T ss_pred CCccCCCCCCCcee----------eeeeEEEEcCCCCCEEeC
Confidence 45999999864211 112246899999988853
No 137
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=39.86 E-value=12 Score=22.70 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=20.8
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCC
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPV 74 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~ 74 (135)
..|.|+.|++.-.. + ...-.+.|..|++.|.-
T Consensus 35 a~y~CpfCgk~~vk--------R--~a~GIW~C~~C~~~~AG 66 (90)
T PRK03976 35 AKHVCPVCGRPKVK--------R--VGTGIWECRKCGAKFAG 66 (90)
T ss_pred cCccCCCCCCCceE--------E--EEEEEEEcCCCCCEEeC
Confidence 45999999764211 1 12236889999988753
No 138
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=39.53 E-value=18 Score=23.76 Aligned_cols=25 Identities=44% Similarity=0.670 Sum_probs=19.8
Q ss_pred eeCccccccccChhhHHhhhcccCCCcc
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~ 62 (135)
..|-++|+.|. +|++|..+|.+--|
T Consensus 77 IicLEDGkkfK---SLKRHL~t~~gmTP 101 (148)
T COG4957 77 IICLEDGKKFK---SLKRHLTTHYGLTP 101 (148)
T ss_pred EEEeccCcchH---HHHHHHhcccCCCH
Confidence 46888999887 58899988877655
No 139
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=39.45 E-value=14 Score=23.27 Aligned_cols=25 Identities=16% Similarity=0.469 Sum_probs=15.8
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~ 71 (135)
..|..||..|..... .+.|+.||..
T Consensus 71 ~~C~~Cg~~~~~~~~------------~~~CP~Cgs~ 95 (113)
T PF01155_consen 71 ARCRDCGHEFEPDEF------------DFSCPRCGSP 95 (113)
T ss_dssp EEETTTS-EEECHHC------------CHH-SSSSSS
T ss_pred EECCCCCCEEecCCC------------CCCCcCCcCC
Confidence 788899888775432 1458888765
No 140
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=39.32 E-value=9.1 Score=19.39 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=8.7
Q ss_pred ceecCCCCCCCC
Q psy1793 62 PYACQDVERSPP 73 (135)
Q Consensus 62 ~~~C~~C~k~f~ 73 (135)
-|.|..|+..+.
T Consensus 28 fy~C~~C~~~w~ 39 (40)
T smart00440 28 FYVCTKCGHRWR 39 (40)
T ss_pred EEEeCCCCCEeC
Confidence 478888887653
No 141
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=38.51 E-value=17 Score=22.19 Aligned_cols=27 Identities=22% Similarity=0.519 Sum_probs=15.9
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCC
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVE 69 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~ 69 (135)
+|-.|..||..|.... + .+|-.|+.|.
T Consensus 57 ~Pa~CkkCGfef~~~~-------i---k~pSRCP~CK 83 (97)
T COG3357 57 RPARCKKCGFEFRDDK-------I---KKPSRCPKCK 83 (97)
T ss_pred cChhhcccCccccccc-------c---CCcccCCcch
Confidence 4567777776665411 1 3466777773
No 142
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.79 E-value=10 Score=21.27 Aligned_cols=45 Identities=4% Similarity=-0.191 Sum_probs=27.6
Q ss_pred HHhhcCCCCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCC
Q psy1793 25 KRRKYEMLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 25 h~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
|..++.+..++.|.--+..|.....+. .+ ..+.-..|+.|++.|.
T Consensus 15 ~~~I~~~~~~l~C~g~~~p~~HPrV~L---~m-g~~gev~CPYC~t~y~ 59 (62)
T COG4391 15 HETIEIGDLPLMCPGPEPPNDHPRVFL---DM-GDEGEVVCPYCSTRYR 59 (62)
T ss_pred ceEEEeCCeeEEcCCCCCCCCCCEEEE---Ec-CCCCcEecCccccEEE
Confidence 455677788889876555544333221 11 3344578999998875
No 143
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=37.02 E-value=25 Score=19.68 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=19.5
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPV 74 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~ 74 (135)
-.|..||..... ....+.|.|+.||..+.+
T Consensus 29 q~C~~CG~~~~~----------~~~~r~~~C~~Cg~~~~r 58 (69)
T PF07282_consen 29 QTCPRCGHRNKK----------RRSGRVFTCPNCGFEMDR 58 (69)
T ss_pred cCccCccccccc----------ccccceEEcCCCCCEECc
Confidence 357888765433 233567899999877543
No 144
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=36.81 E-value=15 Score=24.09 Aligned_cols=10 Identities=20% Similarity=1.152 Sum_probs=5.5
Q ss_pred eeCccccccc
Q psy1793 35 FQCSVCAKYF 44 (135)
Q Consensus 35 ~~C~~C~k~f 44 (135)
|.|..|+..+
T Consensus 124 ~~C~~C~~~~ 133 (157)
T PF10263_consen 124 YRCPSCGREY 133 (157)
T ss_pred EEcCCCCCEe
Confidence 5566665544
No 145
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=36.69 E-value=24 Score=17.71 Aligned_cols=21 Identities=10% Similarity=-0.152 Sum_probs=14.0
Q ss_pred CcceecCCCCCCCCChHhHHH
Q psy1793 60 LKPYACQDVERSPPVMLMVVK 80 (135)
Q Consensus 60 ~k~~~C~~C~k~f~~~~~L~~ 80 (135)
..-+.|+.|+-.+.....|.+
T Consensus 17 ~~id~C~~C~G~W~d~~el~~ 37 (41)
T PF13453_consen 17 VEIDVCPSCGGIWFDAGELEK 37 (41)
T ss_pred EEEEECCCCCeEEccHHHHHH
Confidence 445678888877776666543
No 146
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=35.44 E-value=25 Score=19.23 Aligned_cols=27 Identities=22% Similarity=0.523 Sum_probs=17.3
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
-.|..|++.|.... .-..|+.|+..+-
T Consensus 6 ~~C~~Cg~~~~~~d------------DiVvCp~CgapyH 32 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD------------DIVVCPECGAPYH 32 (54)
T ss_pred ccChhhCCcccCCC------------CEEECCCCCCccc
Confidence 46888887765332 3457888877753
No 147
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=35.09 E-value=25 Score=21.76 Aligned_cols=19 Identities=11% Similarity=0.189 Sum_probs=10.3
Q ss_pred ccccccccChhhHHhhhcc
Q psy1793 38 SVCAKYFHRAADLKRHSIC 56 (135)
Q Consensus 38 ~~C~k~f~~~~~l~~H~~~ 56 (135)
..|+........+..|.+.
T Consensus 88 ~~C~y~~~~~~~m~~H~~~ 106 (109)
T PF12013_consen 88 PHCGYITRSKKTMRKHWRK 106 (109)
T ss_pred CCCCcEeccHHHHHHHHHH
Confidence 5555555555555555543
No 148
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.02 E-value=27 Score=18.02 Aligned_cols=16 Identities=13% Similarity=-0.041 Sum_probs=10.3
Q ss_pred ecCCCCCCCCChHhHH
Q psy1793 64 ACQDVERSPPVMLMVV 79 (135)
Q Consensus 64 ~C~~C~k~f~~~~~L~ 79 (135)
.|..|++.|+-.....
T Consensus 10 ~C~~C~rpf~WRKKW~ 25 (42)
T PF10013_consen 10 ICPVCGRPFTWRKKWA 25 (42)
T ss_pred cCcccCCcchHHHHHH
Confidence 5777777776554443
No 149
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=34.85 E-value=14 Score=24.74 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=10.3
Q ss_pred cceecCCCCCCCCChH
Q psy1793 61 KPYACQDVERSPPVML 76 (135)
Q Consensus 61 k~~~C~~C~k~f~~~~ 76 (135)
+.-.|..|+..|....
T Consensus 27 RRReC~~C~~RFTTfE 42 (156)
T COG1327 27 RRRECLECGERFTTFE 42 (156)
T ss_pred hhhcccccccccchhh
Confidence 3456777777776543
No 150
>KOG4167|consensus
Probab=34.76 E-value=5.5 Score=33.28 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=20.0
Q ss_pred eecCCCCCCCCChHhHHHHhhhCC
Q psy1793 63 YACQDVERSPPVMLMVVKTGEIGI 86 (135)
Q Consensus 63 ~~C~~C~k~f~~~~~L~~H~~c~~ 86 (135)
|-|.+|+|.|-.-..++.||+.|+
T Consensus 793 FpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 793 FPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred eehHHHHHHHHHHhhhhHHHHHHH
Confidence 889999999988888888888554
No 151
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=34.70 E-value=22 Score=17.64 Aligned_cols=31 Identities=23% Similarity=0.619 Sum_probs=18.9
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDV 68 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C 68 (135)
...|+.|+..- .+..|=....|...|.|..|
T Consensus 5 ~v~CP~C~s~~----~v~k~G~~~~G~qryrC~~C 35 (36)
T PF03811_consen 5 DVHCPRCQSTE----GVKKNGKSPSGHQRYRCKDC 35 (36)
T ss_pred eeeCCCCCCCC----cceeCCCCCCCCEeEecCcC
Confidence 35677776542 13334345567778888877
No 152
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=34.55 E-value=20 Score=22.26 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=22.0
Q ss_pred CCceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCC
Q psy1793 32 LKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 32 ~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
++.|.|+.|+.--...-.+. .-...-...|..||.+|.
T Consensus 20 ~k~FtCp~Cghe~vs~ctvk----k~~~~g~~~Cg~CGls~e 57 (104)
T COG4888 20 PKTFTCPRCGHEKVSSCTVK----KTVNIGTAVCGNCGLSFE 57 (104)
T ss_pred CceEecCccCCeeeeEEEEE----ecCceeEEEcccCcceEE
Confidence 35689999987544322211 111222457889988874
No 153
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=34.07 E-value=30 Score=18.03 Aligned_cols=12 Identities=17% Similarity=0.625 Sum_probs=8.2
Q ss_pred ceecCCCCCCCC
Q psy1793 62 PYACQDVERSPP 73 (135)
Q Consensus 62 ~~~C~~C~k~f~ 73 (135)
.|.|+.||..+.
T Consensus 20 ~~vC~~Cg~~~~ 31 (52)
T smart00661 20 RFVCRKCGYEEP 31 (52)
T ss_pred EEECCcCCCeEE
Confidence 677888876543
No 154
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=33.80 E-value=61 Score=23.68 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=20.1
Q ss_pred hhCHHHHHHHHhhcCCC-----CceeCccccccc
Q psy1793 16 EIEAREREEKRRKYEML-----KEFQCSVCAKYF 44 (135)
Q Consensus 16 ~~~~~~l~~h~~~h~~~-----~~~~C~~C~k~f 44 (135)
..+..+|+.....+.+. +.|.|..|+..|
T Consensus 89 PLTe~Nlrm~d~a~~~~ip~~drqFaC~~Cd~~W 122 (278)
T PF15135_consen 89 PLTEENLRMFDDAQENLIPSVDRQFACSSCDHMW 122 (278)
T ss_pred CchHHHHHHhhhhhhccccccceeeeccccchHH
Confidence 44566777777666554 679999997654
No 155
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=33.34 E-value=21 Score=23.27 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=11.0
Q ss_pred ceecCCCCCCCCChH
Q psy1793 62 PYACQDVERSPPVML 76 (135)
Q Consensus 62 ~~~C~~C~k~f~~~~ 76 (135)
|++|..||+.|...+
T Consensus 1 PH~Ct~Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGS 15 (131)
T ss_pred CcccCcCCCCcCCCc
Confidence 567888888887554
No 156
>KOG2636|consensus
Probab=33.18 E-value=30 Score=27.36 Aligned_cols=29 Identities=10% Similarity=-0.142 Sum_probs=23.4
Q ss_pred cccCCCcceecCCCC-CCCCChHhHHHHhh
Q psy1793 55 ICHTGLKPYACQDVE-RSPPVMLMVVKTGE 83 (135)
Q Consensus 55 ~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~ 83 (135)
+.|.....|.|.+|| +++.-...+.+|..
T Consensus 394 KLHGL~~ey~CEICGNy~Y~GrkaF~RHF~ 423 (497)
T KOG2636|consen 394 KLHGLDIEYNCEICGNYVYKGRKAFDRHFN 423 (497)
T ss_pred hhcCCCcccceeeccCccccCcHHHHHHhH
Confidence 457778899999999 88888888888744
No 157
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=33.09 E-value=25 Score=18.76 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=8.5
Q ss_pred cceecCCCCCCC
Q psy1793 61 KPYACQDVERSP 72 (135)
Q Consensus 61 k~~~C~~C~k~f 72 (135)
..+.|..|+..+
T Consensus 36 ~r~~C~~Cgyt~ 47 (50)
T PRK00432 36 DRWHCGKCGYTE 47 (50)
T ss_pred CcEECCCcCCEE
Confidence 467888887653
No 158
>PLN02294 cytochrome c oxidase subunit Vb
Probab=32.80 E-value=23 Score=24.25 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=16.4
Q ss_pred HHhhhcccCCCcceecCCCCCCCCC
Q psy1793 50 LKRHSICHTGLKPYACQDVERSPPV 74 (135)
Q Consensus 50 l~~H~~~h~~~k~~~C~~C~k~f~~ 74 (135)
....+..+.| +|++|++||..|..
T Consensus 130 ~v~Wf~L~kG-kp~RCpeCG~~fkL 153 (174)
T PLN02294 130 DVVWFWLEKG-KSFECPVCTQYFEL 153 (174)
T ss_pred eeEEEEecCC-CceeCCCCCCEEEE
Confidence 3334444454 69999999998853
No 159
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=32.73 E-value=33 Score=27.31 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=18.7
Q ss_pred ceecCCCCCCCCChHhHHHHhh
Q psy1793 62 PYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 62 ~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
-+.|+.|.+.|.....+..|+.
T Consensus 57 FWiCp~CskkF~d~~~~~~H~~ 78 (466)
T PF04780_consen 57 FWICPRCSKKFSDAESCLSHME 78 (466)
T ss_pred EeeCCcccceeCCHHHHHHHHH
Confidence 4689999999999988888876
No 160
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=32.27 E-value=43 Score=16.97 Aligned_cols=10 Identities=10% Similarity=0.079 Sum_probs=5.3
Q ss_pred eecCCCCCCC
Q psy1793 63 YACQDVERSP 72 (135)
Q Consensus 63 ~~C~~C~k~f 72 (135)
..|+.||-.|
T Consensus 14 ~~C~~CgM~Y 23 (41)
T PF13878_consen 14 TTCPTCGMLY 23 (41)
T ss_pred cCCCCCCCEE
Confidence 3566665444
No 161
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=31.88 E-value=45 Score=23.32 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=19.6
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
-+.|+.|+ . ......=.+.-.....+.|..||..+.
T Consensus 6 y~~Cp~Cg-~---eev~hEVik~~g~~~lvrC~eCG~V~~ 41 (201)
T COG1326 6 YIECPSCG-S---EEVSHEVIKERGREPLVRCEECGTVHP 41 (201)
T ss_pred EEECCCCC-c---chhhHHHHHhcCCceEEEccCCCcEee
Confidence 36788887 1 111111112223335688999998874
No 162
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=31.87 E-value=94 Score=23.99 Aligned_cols=55 Identities=11% Similarity=-0.040 Sum_probs=34.6
Q ss_pred ChhhHHhhhcccCCCcce----ecCCCCCCCCChHhHHHHhh--------h-------CCccCchhHHHHHhhh
Q psy1793 46 RAADLKRHSICHTGLKPY----ACQDVERSPPVMLMVVKTGE--------I-------GIAENRHKTVENHQKA 100 (135)
Q Consensus 46 ~~~~l~~H~~~h~~~k~~----~C~~C~k~f~~~~~L~~H~~--------c-------~~~f~~~~~l~~H~~~ 100 (135)
....|..|...-..+..| .|..|...|-.-+.|..|++ | +.-|+.+..|..|.+.
T Consensus 200 ~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~ 273 (493)
T COG5236 200 RSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRN 273 (493)
T ss_pred ecccccccccCCccccCcCCCchhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhc
Confidence 345566666443222222 57778888877778887766 2 4557777777777663
No 163
>KOG2231|consensus
Probab=31.68 E-value=63 Score=27.06 Aligned_cols=62 Identities=13% Similarity=-0.015 Sum_probs=43.1
Q ss_pred CHHHHHHHHhhc-CCCCc----eeCccccccccChhhHHhhhcccCCCcceecCCC------CCCCCChHhHHHHhh
Q psy1793 18 EAREREEKRRKY-EMLKE----FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDV------ERSPPVMLMVVKTGE 83 (135)
Q Consensus 18 ~~~~l~~h~~~h-~~~~~----~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C------~k~f~~~~~L~~H~~ 83 (135)
.+.+|..|+..- .++.. -.|..|...|.....|..|++.+. |.|..| +.-|.....|..|.+
T Consensus 161 t~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR 233 (669)
T KOG2231|consen 161 TRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFR 233 (669)
T ss_pred hHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhh
Confidence 445677776642 22222 368889999999999999887543 455555 456788889999987
No 164
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=31.62 E-value=33 Score=18.36 Aligned_cols=12 Identities=17% Similarity=0.800 Sum_probs=7.7
Q ss_pred eeCccccccccC
Q psy1793 35 FQCSVCAKYFHR 46 (135)
Q Consensus 35 ~~C~~C~k~f~~ 46 (135)
+.|..||..|..
T Consensus 29 W~C~~Cgh~w~~ 40 (55)
T PF14311_consen 29 WKCPKCGHEWKA 40 (55)
T ss_pred EECCCCCCeeEc
Confidence 667777665554
No 165
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=30.90 E-value=40 Score=18.49 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=8.1
Q ss_pred CcceecCCCCCCC
Q psy1793 60 LKPYACQDVERSP 72 (135)
Q Consensus 60 ~k~~~C~~C~k~f 72 (135)
...|.|+.||-.+
T Consensus 12 ~v~~~Cp~cGipt 24 (55)
T PF13824_consen 12 HVNFECPDCGIPT 24 (55)
T ss_pred ccCCcCCCCCCcC
Confidence 4467777776554
No 166
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=30.88 E-value=39 Score=18.49 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=15.5
Q ss_pred CCceeCccccccccChhhHHhhhcccCCCcceecCC
Q psy1793 32 LKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67 (135)
Q Consensus 32 ~~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~ 67 (135)
+.|+....|+..|.+.+-+.. + .......|+.
T Consensus 22 ~~PV~s~~C~H~fek~aI~~~-i---~~~~~~~CPv 53 (57)
T PF11789_consen 22 EDPVKSKKCGHTFEKEAILQY-I---QRNGSKRCPV 53 (57)
T ss_dssp SSEEEESSS--EEEHHHHHHH-C---TTTS-EE-SC
T ss_pred hCCcCcCCCCCeecHHHHHHH-H---HhcCCCCCCC
Confidence 355666677777776554332 2 2345667766
No 167
>KOG2593|consensus
Probab=30.57 E-value=37 Score=26.71 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=19.4
Q ss_pred CCCcceecCCCCCCCCChHhHHHH
Q psy1793 58 TGLKPYACQDVERSPPVMLMVVKT 81 (135)
Q Consensus 58 ~~~k~~~C~~C~k~f~~~~~L~~H 81 (135)
+...-|.|+.|++.|+....++.-
T Consensus 124 t~~~~Y~Cp~C~kkyt~Lea~~L~ 147 (436)
T KOG2593|consen 124 TNVAGYVCPNCQKKYTSLEALQLL 147 (436)
T ss_pred cccccccCCccccchhhhHHHHhh
Confidence 456779999999999988776653
No 168
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=30.53 E-value=20 Score=30.22 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=10.4
Q ss_pred CCCcceecCCCCCC
Q psy1793 58 TGLKPYACQDVERS 71 (135)
Q Consensus 58 ~~~k~~~C~~C~k~ 71 (135)
....|..|+.||..
T Consensus 471 ~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 471 QEPIPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCCCCC
Confidence 44568889999865
No 169
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.52 E-value=38 Score=21.11 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=18.5
Q ss_pred CceeCccccccccChhhHHhhhcccCCCc-ceecCCCCC
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLK-PYACQDVER 70 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k-~~~C~~C~k 70 (135)
+|-.|+.||..-.....-...-......+ .|.|..|+.
T Consensus 1 ~p~~CpYCg~~~~l~~~~~iYg~~~~~~~~~y~C~~C~A 39 (102)
T PF11672_consen 1 KPIICPYCGGPAELVDGSEIYGHRYDDGPYLYVCTPCDA 39 (102)
T ss_pred CCcccCCCCCeeEEcccchhcCccCCCCceeEECCCCCc
Confidence 46678888875333221111111111122 388988864
No 170
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.14 E-value=8.5 Score=22.63 Aligned_cols=32 Identities=16% Similarity=0.454 Sum_probs=20.2
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSP 72 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f 72 (135)
.|.|..|+..| .+.++|. ....-.|+.|+..+
T Consensus 12 ~Y~c~~cg~~~----dvvq~~~---ddplt~ce~c~a~~ 43 (82)
T COG2331 12 SYECTECGNRF----DVVQAMT---DDPLTTCEECGARL 43 (82)
T ss_pred EEeecccchHH----HHHHhcc---cCccccChhhChHH
Confidence 48999998764 3444443 23334788888654
No 171
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=29.70 E-value=13 Score=22.46 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=13.9
Q ss_pred CCCccccCCCccchhcccCCCC
Q psy1793 114 GPMAETLDLGSRDLKKCFGTKN 135 (135)
Q Consensus 114 ~~~~~~~~l~~~~~~~c~g~~~ 135 (135)
..+++.++-..++|.+|||+.+
T Consensus 53 ~sFaPspDe~vg~L~~~f~~~~ 74 (87)
T PF04110_consen 53 NSFAPSPDETVGDLYRCFGTNG 74 (87)
T ss_dssp EEE---TTSBHHHHHHHH-BTT
T ss_pred CccCCCchhHHHHHHHHhCCCC
Confidence 3456667888899999999754
No 172
>KOG3439|consensus
Probab=29.19 E-value=20 Score=22.72 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=17.4
Q ss_pred CCCCccccCCCccchhcccCCC
Q psy1793 113 HGPMAETLDLGSRDLKKCFGTK 134 (135)
Q Consensus 113 ~~~~~~~~~l~~~~~~~c~g~~ 134 (135)
...+++.++-..+.|..|||++
T Consensus 81 N~sFAPsPDq~v~~Ly~cf~~d 102 (116)
T KOG3439|consen 81 NNSFAPSPDQIVGNLYECFGTD 102 (116)
T ss_pred cCccCCCchhHHHHHHHhcCCC
Confidence 3456666778889999999986
No 173
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=28.78 E-value=38 Score=26.62 Aligned_cols=31 Identities=16% Similarity=0.473 Sum_probs=21.7
Q ss_pred eCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHh
Q psy1793 36 QCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLM 77 (135)
Q Consensus 36 ~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~ 77 (135)
.|+.||.+..+ .|..-|.|+.||+.+.....
T Consensus 352 ~Cp~Cg~~m~S-----------~G~~g~rC~kCg~~~~~~~~ 382 (421)
T COG1571 352 VCPRCGGRMKS-----------AGRNGFRCKKCGTRARETLI 382 (421)
T ss_pred CCCccCCchhh-----------cCCCCcccccccccCCcccc
Confidence 68899875332 33448999999998765543
No 174
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=28.62 E-value=37 Score=22.56 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=18.2
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCCC
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~ 71 (135)
..|.|..||..... .+.+ .--.|+.|+..
T Consensus 111 G~l~C~~Cg~~~~~---------~~~~-~l~~Cp~C~~~ 139 (146)
T PF07295_consen 111 GTLVCENCGHEVEL---------THPE-RLPPCPKCGHT 139 (146)
T ss_pred ceEecccCCCEEEe---------cCCC-cCCCCCCCCCC
Confidence 34999999865322 2333 34479999753
No 175
>PF14369 zf-RING_3: zinc-finger
Probab=28.58 E-value=55 Score=15.99 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=17.4
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
.|-|-.|.+...... . +.....|+.|+..|.
T Consensus 2 ~ywCh~C~~~V~~~~--------~-~~~~~~CP~C~~gFv 32 (35)
T PF14369_consen 2 RYWCHQCNRFVRIAP--------S-PDSDVACPRCHGGFV 32 (35)
T ss_pred CEeCccCCCEeEeCc--------C-CCCCcCCcCCCCcEe
Confidence 467777876543211 1 111225999988874
No 176
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=28.47 E-value=32 Score=22.10 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=18.0
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~ 71 (135)
.+.| .|+..|.....-..| -...+.|+.||..
T Consensus 70 ~~~C-~Cg~~~~~~~~~~~~-----~~~~~~CP~Cgs~ 101 (124)
T PRK00762 70 EIEC-ECGYEGVVDEDEIDH-----YAAVIECPVCGNK 101 (124)
T ss_pred eEEe-eCcCcccccccchhc-----cccCCcCcCCCCC
Confidence 4789 999877654210000 0113579999843
No 177
>COG1773 Rubredoxin [Energy production and conversion]
Probab=28.45 E-value=25 Score=19.34 Aligned_cols=12 Identities=8% Similarity=0.113 Sum_probs=8.1
Q ss_pred ceecCCCCCCCC
Q psy1793 62 PYACQDVERSPP 73 (135)
Q Consensus 62 ~~~C~~C~k~f~ 73 (135)
.|+|..||..|-
T Consensus 3 ~~~C~~CG~vYd 14 (55)
T COG1773 3 RWRCSVCGYVYD 14 (55)
T ss_pred ceEecCCceEec
Confidence 567777777663
No 178
>KOG0717|consensus
Probab=28.33 E-value=35 Score=27.16 Aligned_cols=39 Identities=5% Similarity=-0.026 Sum_probs=26.5
Q ss_pred eecCCCCCCCCChHhHHHHhhhCCccCchhHHHHHhhhc
Q psy1793 63 YACQDVERSPPVMLMVVKTGEIGIAENRHKTVENHQKAV 101 (135)
Q Consensus 63 ~~C~~C~k~f~~~~~L~~H~~c~~~f~~~~~l~~H~~~h 101 (135)
+-|..|+|+|.+...|..|...-+--..-.-|..++.-+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqemEEE 331 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQEMEEE 331 (508)
T ss_pred eEEeeccccccchHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 679999999999999999977433223333444554443
No 179
>COG4640 Predicted membrane protein [Function unknown]
Probab=26.32 E-value=51 Score=25.77 Aligned_cols=14 Identities=7% Similarity=-0.047 Sum_probs=8.2
Q ss_pred hCCccCchhHHHHH
Q psy1793 84 IGIAENRHKTVENH 97 (135)
Q Consensus 84 c~~~f~~~~~l~~H 97 (135)
.++.|+....+..-
T Consensus 71 fgk~fssp~~~vk~ 84 (465)
T COG4640 71 FGKNFSSPEAQVKI 84 (465)
T ss_pred HhhccCCHHHHHHH
Confidence 56667666655443
No 180
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=25.88 E-value=44 Score=20.88 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=6.5
Q ss_pred ceecCCCCCCCCC
Q psy1793 62 PYACQDVERSPPV 74 (135)
Q Consensus 62 ~~~C~~C~k~f~~ 74 (135)
|++|..||..|..
T Consensus 2 pH~CtrCG~vf~~ 14 (112)
T COG3364 2 PHQCTRCGEVFDD 14 (112)
T ss_pred Cceeccccccccc
Confidence 3445555555544
No 181
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=25.15 E-value=52 Score=21.51 Aligned_cols=11 Identities=27% Similarity=0.721 Sum_probs=5.1
Q ss_pred ceecCCCCCCC
Q psy1793 62 PYACQDVERSP 72 (135)
Q Consensus 62 ~~~C~~C~k~f 72 (135)
.|.|..|+..+
T Consensus 112 ~y~C~~C~~~~ 122 (146)
T smart00731 112 PYRCTGCGQRY 122 (146)
T ss_pred EEECCCCCCCC
Confidence 44554454443
No 182
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=24.96 E-value=25 Score=18.82 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=5.3
Q ss_pred ecCCCCCCCCC
Q psy1793 64 ACQDVERSPPV 74 (135)
Q Consensus 64 ~C~~C~k~f~~ 74 (135)
.|+.|++.|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 78888888753
No 183
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=24.82 E-value=59 Score=15.79 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=9.7
Q ss_pred ceecCCCCCCCCChHhHHHHh
Q psy1793 62 PYACQDVERSPPVMLMVVKTG 82 (135)
Q Consensus 62 ~~~C~~C~k~f~~~~~L~~H~ 82 (135)
-+.|+.|++.+.. +.+..|+
T Consensus 4 ~~~C~nC~R~v~a-~RfA~HL 23 (33)
T PF08209_consen 4 YVECPNCGRPVAA-SRFAPHL 23 (33)
T ss_dssp EEE-TTTSSEEEG-GGHHHHH
T ss_pred eEECCCCcCCcch-hhhHHHH
Confidence 4567777765432 2344443
No 184
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=24.80 E-value=36 Score=22.04 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=22.7
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCCh
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVM 75 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~ 75 (135)
-.|+.|+..... .+-..-.+...|.|..|++.|...
T Consensus 31 ~~cP~C~s~~~~-----k~g~~~~~~qRyrC~~C~~tf~~~ 66 (129)
T COG3677 31 VNCPRCKSSNVV-----KIGGIRRGHQRYKCKSCGSTFTVE 66 (129)
T ss_pred CcCCCCCcccee-----eECCccccccccccCCcCcceeee
Confidence 468888754311 111223446689999999999644
No 185
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.76 E-value=55 Score=24.25 Aligned_cols=8 Identities=13% Similarity=0.596 Sum_probs=3.6
Q ss_pred ecCCCCCC
Q psy1793 64 ACQDVERS 71 (135)
Q Consensus 64 ~C~~C~k~ 71 (135)
.|+.|+..
T Consensus 271 ~C~~Cgt~ 278 (279)
T TIGR00627 271 ICKTCKTA 278 (279)
T ss_pred CCCCCCCC
Confidence 44444443
No 186
>KOG2907|consensus
Probab=24.38 E-value=55 Score=20.81 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=21.9
Q ss_pred ceeCccccccccChhhHHhhhcc-cCCC-cceecCCCCCCCCC
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSIC-HTGL-KPYACQDVERSPPV 74 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~-h~~~-k~~~C~~C~k~f~~ 74 (135)
...|+.||.-=-.-.. ..+|+ ..|. .-|.|+.|++.|+-
T Consensus 74 ~~kCpkCghe~m~Y~T--~QlRSADEGQTVFYTC~kC~~k~~e 114 (116)
T KOG2907|consen 74 KHKCPKCGHEEMSYHT--LQLRSADEGQTVFYTCPKCKYKFTE 114 (116)
T ss_pred hccCcccCCchhhhhh--hhcccccCCceEEEEcCccceeeec
Confidence 3689999863221111 22232 2232 35899999988753
No 187
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=24.31 E-value=15 Score=20.97 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=23.7
Q ss_pred ceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHH
Q psy1793 34 EFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVK 80 (135)
Q Consensus 34 ~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~ 80 (135)
.|.|..|+..-...-+ . ..-+.|..-.+|+.|.....-.++|..
T Consensus 4 ~FTC~~C~~Rs~~~~s--k-~aY~~GvViv~C~gC~~~HlIaDnLg~ 47 (66)
T PF05180_consen 4 TFTCNKCGTRSAKMFS--K-QAYHKGVVIVQCPGCKNRHLIADNLGW 47 (66)
T ss_dssp EEEETTTTEEEEEEEE--H-HHHHTSEEEEE-TTS--EEES--SS-S
T ss_pred EEEcCCCCCccceeeC--H-HHHhCCeEEEECCCCcceeeehhhhcc
Confidence 4889999854332211 1 124677788899999877666665543
No 188
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.11 E-value=90 Score=19.82 Aligned_cols=46 Identities=15% Similarity=0.047 Sum_probs=28.4
Q ss_pred eCccccccccChhhHHhhhcccCCCcceecCCCCCCCCChHhHHHHhh
Q psy1793 36 QCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE 83 (135)
Q Consensus 36 ~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~ 83 (135)
.|--|...|........ ..-+....|+|+.|...|-..-+...|..
T Consensus 57 ~C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 102 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPF--DELKDSHRYVCAVCKNVFCVDCDVFVHES 102 (112)
T ss_pred cccCcCCCCCCcccccc--cccccccceeCCCCCCccccccchhhhhh
Confidence 47778888775431110 00223457889999988877766666654
No 189
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=23.93 E-value=36 Score=21.41 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=20.4
Q ss_pred CCCceeCccccccccChhhHHhhhc
Q psy1793 31 MLKEFQCSVCAKYFHRAADLKRHSI 55 (135)
Q Consensus 31 ~~~~~~C~~C~k~f~~~~~l~~H~~ 55 (135)
|-..+-|-+|.+.|.....|..|.+
T Consensus 52 GlGqhYCieCaryf~t~~aL~~Hkk 76 (126)
T COG5112 52 GLGQHYCIECARYFITEKALMEHKK 76 (126)
T ss_pred CCceeeeehhHHHHHHHHHHHHHhc
Confidence 3445889999999999999988875
No 190
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=23.87 E-value=28 Score=17.11 Aligned_cols=13 Identities=8% Similarity=0.169 Sum_probs=6.0
Q ss_pred ecCCCCCCCCChH
Q psy1793 64 ACQDVERSPPVML 76 (135)
Q Consensus 64 ~C~~C~k~f~~~~ 76 (135)
.|.+|++.|..+.
T Consensus 5 ~C~eC~~~f~dSy 17 (34)
T PF01286_consen 5 KCDECGKPFMDSY 17 (34)
T ss_dssp E-TTT--EES-SS
T ss_pred hHhHhCCHHHHHH
Confidence 5778888776553
No 191
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=23.59 E-value=30 Score=18.68 Aligned_cols=30 Identities=20% Similarity=0.493 Sum_probs=17.0
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCC
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDV 68 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C 68 (135)
..|.|+.|...|-..=.+-.|... +.|+.|
T Consensus 20 ~~y~C~~C~~~FC~dCD~fiHE~L------H~CPGC 49 (51)
T PF07975_consen 20 SRYRCPKCKNHFCIDCDVFIHETL------HNCPGC 49 (51)
T ss_dssp EEE--TTTT--B-HHHHHTTTTTS-------SSSTT
T ss_pred CeEECCCCCCccccCcChhhhccc------cCCcCC
Confidence 569999999999877776666544 456666
No 192
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=23.25 E-value=52 Score=26.28 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.3
Q ss_pred eeCccccccccChhhHHhhhc-ccCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSI-CHTG 59 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~-~h~~ 59 (135)
|.|+.|.+.|.....+..|+. .|.+
T Consensus 58 WiCp~CskkF~d~~~~~~H~~~eH~~ 83 (466)
T PF04780_consen 58 WICPRCSKKFSDAESCLSHMEQEHPA 83 (466)
T ss_pred eeCCcccceeCCHHHHHHHHHHhhhh
Confidence 689999999999999999986 3543
No 193
>KOG2071|consensus
Probab=23.08 E-value=46 Score=27.25 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=21.0
Q ss_pred CCceeCccccccccChhhHHhhhcccC
Q psy1793 32 LKEFQCSVCAKYFHRAADLKRHSICHT 58 (135)
Q Consensus 32 ~~~~~C~~C~k~f~~~~~l~~H~~~h~ 58 (135)
..|-.|..||..|........||.+|.
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H~ 442 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIHD 442 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhhh
Confidence 466789999999998877777776653
No 194
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.07 E-value=32 Score=18.36 Aligned_cols=16 Identities=13% Similarity=0.017 Sum_probs=11.5
Q ss_pred ecCCCCCCCCChHhHH
Q psy1793 64 ACQDVERSPPVMLMVV 79 (135)
Q Consensus 64 ~C~~C~k~f~~~~~L~ 79 (135)
.|+.|++.|+......
T Consensus 14 ICpvCqRPFsWRkKW~ 29 (54)
T COG4338 14 ICPVCQRPFSWRKKWA 29 (54)
T ss_pred hhhhhcCchHHHHHHH
Confidence 6888888887665544
No 195
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=22.70 E-value=34 Score=18.06 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=6.8
Q ss_pred eecCCCCCCC
Q psy1793 63 YACQDVERSP 72 (135)
Q Consensus 63 ~~C~~C~k~f 72 (135)
|+|..|+..|
T Consensus 2 y~C~~CgyvY 11 (47)
T PF00301_consen 2 YQCPVCGYVY 11 (47)
T ss_dssp EEETTTSBEE
T ss_pred cCCCCCCEEE
Confidence 6777777655
No 196
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=22.55 E-value=59 Score=19.82 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=16.9
Q ss_pred eCccccccccChhhHHhhhcccCCCcceecCCCCCCCCC
Q psy1793 36 QCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPV 74 (135)
Q Consensus 36 ~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~ 74 (135)
-|+.||..+... ...+.|+.|+..+..
T Consensus 2 fC~~Cg~~l~~~------------~~~~~C~~C~~~~~~ 28 (104)
T TIGR01384 2 FCPKCGSLMTPK------------NGVYVCPSCGYEKEK 28 (104)
T ss_pred CCcccCcccccC------------CCeEECcCCCCcccc
Confidence 377787665321 125788888877654
No 197
>KOG1994|consensus
Probab=22.52 E-value=1.3e+02 Score=21.81 Aligned_cols=22 Identities=23% Similarity=0.608 Sum_probs=17.8
Q ss_pred CceeCccccccccChhhHHhhh
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHS 54 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~ 54 (135)
.-|-|-.||-.|.....|..|-
T Consensus 238 eh~YC~fCG~~y~~~edl~ehC 259 (268)
T KOG1994|consen 238 EHYYCFFCGIKYKDEEDLYEHC 259 (268)
T ss_pred cceEEEEeccccCCHHHHHHhC
Confidence 4488999999999888887763
No 198
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=22.33 E-value=33 Score=16.78 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=6.6
Q ss_pred CcceecCCCCC
Q psy1793 60 LKPYACQDVER 70 (135)
Q Consensus 60 ~k~~~C~~C~k 70 (135)
...+.|+.|+.
T Consensus 20 r~R~vC~~Cg~ 30 (34)
T PF14803_consen 20 RERLVCPACGF 30 (34)
T ss_dssp S-EEEETTTTE
T ss_pred ccceECCCCCC
Confidence 34567877764
No 199
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=22.29 E-value=34 Score=18.32 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=7.9
Q ss_pred eecCCCCCCCC
Q psy1793 63 YACQDVERSPP 73 (135)
Q Consensus 63 ~~C~~C~k~f~ 73 (135)
|+|..||..|-
T Consensus 2 y~C~~CgyiYd 12 (50)
T cd00730 2 YECRICGYIYD 12 (50)
T ss_pred cCCCCCCeEEC
Confidence 67788877664
No 200
>PRK04351 hypothetical protein; Provisional
Probab=22.24 E-value=55 Score=21.77 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=4.5
Q ss_pred eecCCCCCCC
Q psy1793 63 YACQDVERSP 72 (135)
Q Consensus 63 ~~C~~C~k~f 72 (135)
|.|..|+..+
T Consensus 113 Y~C~~Cg~~~ 122 (149)
T PRK04351 113 YECQSCGQQY 122 (149)
T ss_pred EECCCCCCEe
Confidence 4444444433
No 201
>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function.
Probab=21.91 E-value=53 Score=18.11 Aligned_cols=36 Identities=14% Similarity=0.417 Sum_probs=16.6
Q ss_pred eCccccccccChh-hHHhhhcccCCCcceecCCCCCC
Q psy1793 36 QCSVCAKYFHRAA-DLKRHSICHTGLKPYACQDVERS 71 (135)
Q Consensus 36 ~C~~C~k~f~~~~-~l~~H~~~h~~~k~~~C~~C~k~ 71 (135)
.|-.|++.+.-.. .+..-.........|.|..|.-.
T Consensus 4 kC~lCdk~~~Id~~~~~aKrLrnrPi~tYmC~eC~~R 40 (56)
T PF09963_consen 4 KCILCDKKEEIDEDTPEAKRLRNRPIHTYMCDECKER 40 (56)
T ss_pred EEEecCCEEEeccCCHHHHHhhcCCCcceeChhHHHH
Confidence 5666776654322 12111111223345777777543
No 202
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=21.83 E-value=29 Score=18.11 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=20.3
Q ss_pred eCccccccccChhhHHhhhcccCCCcceecCC--CCCCCCC
Q psy1793 36 QCSVCAKYFHRAADLKRHSICHTGLKPYACQD--VERSPPV 74 (135)
Q Consensus 36 ~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~--C~k~f~~ 74 (135)
.|+.||....-+.+...+ ....+.-++|.. ||..|..
T Consensus 1 ~CP~Cg~~a~ir~S~~~s--~~~~~~Y~qC~N~~Cg~tfv~ 39 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQLS--PLTRELYCQCTNPECGHTFVA 39 (47)
T ss_pred CcCCCCCeeEEEEchhhC--cceEEEEEEECCCcCCCEEEE
Confidence 377787765544433322 122344567854 8877753
No 203
>COG4896 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.73 E-value=63 Score=18.18 Aligned_cols=10 Identities=30% Similarity=0.936 Sum_probs=5.0
Q ss_pred cceecCCCCC
Q psy1793 61 KPYACQDVER 70 (135)
Q Consensus 61 k~~~C~~C~k 70 (135)
+.|.|++|..
T Consensus 30 rtymC~eC~~ 39 (68)
T COG4896 30 RTYMCPECEH 39 (68)
T ss_pred eeEechhhHh
Confidence 3455555543
No 204
>KOG0717|consensus
Probab=21.58 E-value=46 Score=26.56 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=19.6
Q ss_pred eeCccccccccChhhHHhhhcc
Q psy1793 35 FQCSVCAKYFHRAADLKRHSIC 56 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~ 56 (135)
+.|.+|.++|.....+..|..+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEeeccccccchHHHHhhHHH
Confidence 8899999999999999988643
No 205
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=21.44 E-value=1.2e+02 Score=16.54 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=14.8
Q ss_pred CceeCccccccccChhhHHh
Q psy1793 33 KEFQCSVCAKYFHRAADLKR 52 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~ 52 (135)
.-+-|-.||-.|.....|..
T Consensus 26 ~~~YC~~Cg~~Y~d~~dL~~ 45 (55)
T PF13821_consen 26 EHNYCFWCGTKYDDEEDLER 45 (55)
T ss_pred hCceeeeeCCccCCHHHHHh
Confidence 34678888888888777654
No 206
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=21.38 E-value=39 Score=17.18 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=8.9
Q ss_pred cceecCCCCCCC
Q psy1793 61 KPYACQDVERSP 72 (135)
Q Consensus 61 k~~~C~~C~k~f 72 (135)
.+..|+.|+..|
T Consensus 28 ~~~~CpYCg~~y 39 (40)
T PF10276_consen 28 GPVVCPYCGTRY 39 (40)
T ss_dssp CEEEETTTTEEE
T ss_pred CeEECCCCCCEE
Confidence 467888888765
No 207
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=21.33 E-value=55 Score=20.62 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=15.9
Q ss_pred eCccccccccChhhHHhhhcccCCCcceecCCCCCCCCC
Q psy1793 36 QCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPV 74 (135)
Q Consensus 36 ~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~ 74 (135)
.|+.|+.-|.+. ....|.|++|+..+..
T Consensus 4 ~CP~C~seytY~-----------dg~~~iCpeC~~EW~~ 31 (109)
T TIGR00686 4 PCPKCNSEYTYH-----------DGTQLICPSCLYEWNE 31 (109)
T ss_pred cCCcCCCcceEe-----------cCCeeECccccccccc
Confidence 466666544432 2335778877766543
No 208
>PRK05978 hypothetical protein; Provisional
Probab=21.31 E-value=44 Score=22.32 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=17.5
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPV 74 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~ 74 (135)
-.|+.||+.=-....|+. .-.|+.||..|..
T Consensus 34 grCP~CG~G~LF~g~Lkv---------~~~C~~CG~~~~~ 64 (148)
T PRK05978 34 GRCPACGEGKLFRAFLKP---------VDHCAACGEDFTH 64 (148)
T ss_pred CcCCCCCCCccccccccc---------CCCccccCCcccc
Confidence 467788765443333321 2257778776654
No 209
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=20.63 E-value=65 Score=27.78 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=19.3
Q ss_pred eeCccccccccChhhHHhhhcccCCCcceecCCCCCCCC
Q psy1793 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPP 73 (135)
Q Consensus 35 ~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~ 73 (135)
-.|..|++.|..... -.+.+.+-|+.||..|-
T Consensus 461 dtC~~C~kkFfSlsK-------~L~~RKHHCRkCGrVFC 492 (1374)
T PTZ00303 461 DSCPSCGRAFISLSR-------PLGTRAHHCRSCGIRLC 492 (1374)
T ss_pred CcccCcCCccccccc-------ccccccccccCCccccC
Confidence 468899998865411 01234556777777663
No 210
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=20.59 E-value=59 Score=20.13 Aligned_cols=36 Identities=17% Similarity=0.360 Sum_probs=20.5
Q ss_pred CceeCccccccccChhhHHhhhcccCCCcceecCCCCCCCCCh
Q psy1793 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVM 75 (135)
Q Consensus 33 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~k~~~C~~C~k~f~~~ 75 (135)
..|.|+.|+. ....-. +..+.--..|+.||..+...
T Consensus 20 t~f~CP~Cge-~~v~v~------~~k~~~h~~C~~CG~y~~~~ 55 (99)
T PRK14892 20 KIFECPRCGK-VSISVK------IKKNIAIITCGNCGLYTEFE 55 (99)
T ss_pred cEeECCCCCC-eEeeee------cCCCcceEECCCCCCccCEE
Confidence 4488999983 221111 11133446899998877553
No 211
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=20.17 E-value=68 Score=24.75 Aligned_cols=29 Identities=10% Similarity=-0.200 Sum_probs=22.5
Q ss_pred cccCCCcceecCCCC-CCCCChHhHHHHhh
Q psy1793 55 ICHTGLKPYACQDVE-RSPPVMLMVVKTGE 83 (135)
Q Consensus 55 ~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~ 83 (135)
+.|...+.|.|.+|| +++.-...+.+|..
T Consensus 367 klhgLd~ef~CEICgNyvy~GR~~FdrHF~ 396 (470)
T COG5188 367 KLHGLDIEFECEICGNYVYYGRDRFDRHFE 396 (470)
T ss_pred HhcCCCcceeeeecccccccchHHHHhhhh
Confidence 456777899999998 78777777777744
Done!