RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1793
(135 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 33.5 bits (76), Expect = 0.020
Identities = 13/40 (32%), Positives = 14/40 (35%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSP 72
+ C C F R L RH HTG KP C
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDK 71
Score = 30.4 bits (68), Expect = 0.22
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 10/107 (9%)
Query: 7 KELITLTQEEIEAREREEKRRKYEMLKEFQC--SVCAKYFHRAADLKRHSICHTGLKPYA 64
+ I+ ++ R E LK F C S+C K F R LKRH + HT + P
Sbjct: 294 QCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAK 353
Query: 65 CQDVERSPPVMLMVVKTGEIGIAENRHKTVENHQKAVKIPPTETEGQ 111
+ + S + ++++ ++ +ET
Sbjct: 354 EKLLNSSSKFS--------PLLNNEPPQSLQQYKDLKNDKKSETLSN 392
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 29.0 bits (65), Expect = 0.10
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 35 FQCSVCAKYFHRAADLKRHSICH 57
++C C K F + L+ H H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|227947 COG5660, COG5660, Predicted integral membrane protein [Function
unknown].
Length = 238
Score = 29.5 bits (66), Expect = 0.48
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 18/72 (25%)
Query: 12 LTQEEIEAR-----EREEKRRKYEMLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQ 66
+ +E + AR +R E L CS C ++ + A+L R
Sbjct: 6 VAREALSARLDGERKRLPSAVVEEHLGN--CSACRAWYDQVAELARM---------LREL 54
Query: 67 DVERS--PPVML 76
R PP L
Sbjct: 55 AEPRPYLPPDEL 66
>gnl|CDD|220515 pfam10003, DUF2244, Integral membrane protein (DUF2244). This
domain, found in various bacterial hypothetical and
putative membrane proteins, has no known function.
Length = 140
Score = 28.3 bits (64), Expect = 0.89
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 5 EDKELITLTQEEIEAREREEKRRKYE 30
D+E+ITLT EE+ + + R+ E
Sbjct: 61 RDREVITLTPEELLVIRKGPRGRERE 86
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family
contains a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 26.1 bits (57), Expect = 0.97
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 35 FQCSVCAKYFHRAADLKRHSICH 57
F+C +C K F LKRH H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 26.2 bits (58), Expect = 1.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 49 DLKRHSICHTGLKPYAC 65
+L+RH HTG KPY C
Sbjct: 1 NLRRHMRTHTGEKPYKC 17
>gnl|CDD|237603 PRK14083, PRK14083, HSP90 family protein; Provisional.
Length = 601
Score = 28.4 bits (64), Expect = 1.3
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 14 QEEIEAREREEKRRKYEMLKEFQCSVCAKYFH 45
+EE+ R + R E+L F C V ++F
Sbjct: 455 EEELALRPFLAEAR--EVLAPFGCDVVIRHFE 484
>gnl|CDD|182927 PRK11050, PRK11050, manganese transport regulator MntR;
Provisional.
Length = 152
Score = 26.9 bits (60), Expect = 3.0
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 87 AENRHKTVENHQKAVKIPPT----ETEGQTHGPMAETLDLGSRDLKK 129
+ RH+ VEN A+ + P + EG H ETL R L++
Sbjct: 102 SRERHQIVENFLLALGVSPETARRDAEGIEHHVSEETLAAFRRFLQR 148
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 27.1 bits (60), Expect = 3.4
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 1 MIKEEDKELITLTQEEIE-AREREEKRRKYE 30
+++E+ +EL L +EE E R+ EE+RR+ E
Sbjct: 250 LLEEKRRELEKLAKEEAERERQAEEQRRREE 280
>gnl|CDD|181620 PRK09040, PRK09040, hypothetical protein; Provisional.
Length = 214
Score = 26.9 bits (60), Expect = 3.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 8 ELITLTQEEIEAREREEKRRK 28
EL + + E++ R+ E +RRK
Sbjct: 42 ELSSKLEAEVKQRQAEAQRRK 62
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus,
particularly the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 24.5 bits (54), Expect = 3.7
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 37 CSVCAKYFHRAADLKRH 53
C C KYF L+ H
Sbjct: 4 CVACDKYFKSENALENH 20
>gnl|CDD|225951 COG3417, FlgN, Collagen-binding surface adhesin SpaP (antigen I/II
family) [General function prediction only].
Length = 200
Score = 26.8 bits (59), Expect = 3.9
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 63 YACQDVERSPPVM---LMVVKTGEI 84
Y+ + P + LM+V+TGEI
Sbjct: 165 YSDASGDYKAPTLTMQLMLVQTGEI 189
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys.
The C2H2 zinc finger is composed of two short beta
strands followed by an alpha helix. The amino terminal
part of the helix binds the major groove in DNA binding
zinc fingers. The accepted consensus binding sequence
for Sp1 is usually defined by the asymmetric
hexanucleotide core GGGCGG but this sequence does not
include, among others, the GAG (=CTC) repeat that
constitutes a high-affinity site for Sp1 binding to the
wt1 promoter.
Length = 22
Score = 24.2 bits (53), Expect = 4.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 36 QCSVCAKYFHRAADLKRH 53
+C C K F R ++LKRH
Sbjct: 1 KCPDCGKSFSRKSNLKRH 18
>gnl|CDD|225537 COG2990, VirK, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 300
Score = 26.5 bits (59), Expect = 4.3
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 15 EEIEAREREEKRRKYEMLKEFQCSV 39
+I +++R R++Y ML E +
Sbjct: 270 ADIASKKRSMYRKRYAMLDEIAAQM 294
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 26.3 bits (58), Expect = 6.1
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 5 EDKELITLTQEEIEAREREEKRRKYEMLKE 34
E K+L+ +T+E ++ E EE+++K E LK+
Sbjct: 334 EGKKLVNVTKEGLKLEESEEEKKKREELKK 363
>gnl|CDD|189911 pfam01256, Carb_kinase, Carbohydrate kinase. This family is
related to pfam02110 and pfam00294 implying that it also
is a carbohydrate kinase. (personal obs Yeats C).
Length = 242
Score = 25.8 bits (57), Expect = 7.1
Identities = 5/30 (16%), Positives = 7/30 (23%)
Query: 91 HKTVENHQKAVKIPPTETEGQTHGPMAETL 120
+ V I T G + L
Sbjct: 162 VTVIAAPGGEVWINSTGNSALAKGGSGDVL 191
>gnl|CDD|183481 PRK12376, PRK12376, putative translaldolase; Provisional.
Length = 236
Score = 25.7 bits (57), Expect = 8.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 101 VKIPPTETEGQTHGPMAETL 120
VKIP T T+G++ P+ + L
Sbjct: 89 VKIPITNTKGESTIPLIKKL 108
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 25.1 bits (56), Expect = 9.2
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 15 EEIEAREREEKRRKYEMLK 33
EI R+ + R LK
Sbjct: 118 AEIIERDERDSTRYVAPLK 136
>gnl|CDD|129443 TIGR00343, TIGR00343, pyridoxal 5'-phosphate synthase, synthase
subunit Pdx1. This protein had been believed to be a
singlet oxygen resistance protein. Subsequent work
showed that it is a protein of pyridoxine (vitamin B6)
biosynthesis, and that pyridoxine quenches the highly
toxic singlet form of oxygen produced by light in the
presence of certain chemicals [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridoxine].
Length = 287
Score = 25.5 bits (56), Expect = 9.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 1 MIKEEDKELITLTQEEIEAREREEKRRKYEMLKE 34
I EE +++ + +EE A +E R E+L E
Sbjct: 158 KINEEIRQIQNMLEEEDLAAVAKELRVPVELLLE 191
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.383
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,722,984
Number of extensions: 579115
Number of successful extensions: 1014
Number of sequences better than 10.0: 1
Number of HSP's gapped: 997
Number of HSP's successfully gapped: 89
Length of query: 135
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 48
Effective length of database: 7,078,804
Effective search space: 339782592
Effective search space used: 339782592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.0 bits)