RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1793
(135 letters)
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 43.4 bits (102), Expect = 3e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K+ C +C K F L RH + H+G KPY+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 42.1 bits (100), Expect = 2e-06
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 32 LKEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+K FQC +C + F R+ L H HTG KP+AC
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 34
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
K F C +C + F R+ + KRH P VE
Sbjct: 30 KPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEEL 67
Score = 26.3 bits (59), Expect = 1.7
Identities = 2/32 (6%), Positives = 6/32 (18%), Gaps = 3/32 (9%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSIC---HTGLK 61
+ + L+ G +
Sbjct: 57 LPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 41.8 bits (99), Expect = 2e-06
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 33 KEFQCSVCAKYFHRAADLKRH--SICHTGLKPYAC 65
++C VC++ + ++ RH + +K Y C
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPC 43
Score = 28.3 bits (64), Expect = 0.20
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGL 60
K + C C K F R ++ H +
Sbjct: 39 KVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 41.5 bits (98), Expect = 3e-06
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
+ + C V C + F R+ +L RH HTG KP+ C+ R+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
Score = 30.7 bits (70), Expect = 0.035
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 26 RRKYEMLKEFQCSVCAKYFHRAADLKRHSICHT 58
R + K FQC +C + F R+ L H HT
Sbjct: 41 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 40.9 bits (97), Expect = 3e-06
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
+ F C VC + F R LKRH HT KPY C
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL 35
Score = 27.1 bits (61), Expect = 0.44
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSI-CHTG 59
K + C +C + F R L RH+ H+G
Sbjct: 29 KPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 42.5 bits (101), Expect = 3e-06
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVE 69
K FQC C + F R+ LK H+ HTG KP++C+
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS 101
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 33 KEFQCS--VCAKYFHRAADLKRHSICHTGLKPYACQDVE 69
+ F C+ C K + + + L+ HS HTG KPY C +
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKD 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYACQD 67
K +QC C + F R+ LKRH HTG+KP+ C+
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 41.3 bits (98), Expect = 4e-06
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
+ + C C K FH+ +D+K+H+ HTG KP+ CQ
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Score = 38.9 bits (92), Expect = 3e-05
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
F C +C K F R++ L H + H+ +PY CQ
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY 34
Score = 28.2 bits (64), Expect = 0.29
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTG 59
K +C VC K F ++++L HS HTG
Sbjct: 56 KPHKCQVCGKAFSQSSNLITHSRKHTG 82
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 40.9 bits (97), Expect = 7e-06
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
+C VC K F R LK H CHTG+KPY C+
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKT 41
Score = 37.8 bits (89), Expect = 1e-04
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
K ++C C ++ L +H H+ +P+ CQ
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Score = 37.0 bits (87), Expect = 2e-04
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+ F+C +C ++ L H HTG +
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 40.1 bits (94), Expect = 1e-05
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 19 AREREEKRRKYEMLKEFQCSV--CAKYFHRAADLKRHSICHTGLKPYACQ 66
+ + ++ CS C K + +++ LK H+ HTG KP++C
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCS 51
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 40.5 bits (96), Expect = 1e-05
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K FQC +C + F R+ L H HTG KP+AC
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Score = 36.3 bits (85), Expect = 4e-04
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYAC 65
+ + C V C + F ++ L RH HTG KP+ C
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC 37
Score = 30.9 bits (71), Expect = 0.033
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLK 61
K F C +C + F R+ + KRH+ H K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 40.7 bits (96), Expect = 1e-05
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
K ++C+ C F R+ +L RH HTG KP+ C RS
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRS 84
Score = 34.5 bits (80), Expect = 0.002
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYAC 65
+ C C K + +++ LK H HTG KPY C
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKC 48
Score = 29.9 bits (68), Expect = 0.095
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHT 58
K FQC VC + F R+ L H H
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKRHQ 99
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 1e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K +QCS C K F + L +H I HT KP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 1e-05
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+ + C+ C K F R + L H H K
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 23.2 bits (51), Expect = 9.7
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 53 HSICHTGLKPYAC 65
+G +PY C
Sbjct: 3 SGSSGSGERPYGC 15
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 40.2 bits (95), Expect = 1e-05
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 33 KEFQCS--VCAKYFHRAADLKRHSICHTGLKPYACQ 66
K F C C K F+ LK H H+ + Y C+
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72
Score = 37.1 bits (87), Expect = 1e-04
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 3/37 (8%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHS-ICHTGLKPYACQ 66
C C + F L H H K ++C
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCP 42
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 39.8 bits (94), Expect = 1e-05
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 30 EMLKEFQCSVCAKYFHRAADLKRHS-ICHTGLKPYA 64
E + +F C C R +DL H H+ P +
Sbjct: 41 ENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
Score = 38.7 bits (91), Expect = 3e-05
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTG--LKPYACQ 66
K ++C +C F ++ +K H + + + C
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCP 49
Score = 27.1 bits (61), Expect = 0.75
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 50 LKRHSICHTGLKPYACQ 66
H+G KPY C
Sbjct: 3 SGSSGRTHSGEKPYECY 19
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 39.1 bits (92), Expect = 1e-05
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K F CS C K F + L H H KP
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 23.3 bits (51), Expect = 9.3
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 57 HTGLKPYACQD 67
+G KP+ C
Sbjct: 5 SSGEKPFGCSC 15
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 39.2 bits (92), Expect = 1e-05
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYACQ 66
K F C+ C F R+ +L RH H+G+KP
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 24.6 bits (54), Expect = 3.9
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 53 HSICHTGLKPYACQ 66
TG KP+AC
Sbjct: 3 SGSSGTGEKPFACT 16
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-05
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K F+C +C K F + L RHS+ HT KP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 40.2 bits (95), Expect = 1e-05
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
C +C K F L RH + H+G KPY+C
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPV 40
Score = 36.3 bits (85), Expect = 4e-04
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTG--LKPYACQD 67
K + C VC F R + H H G KPY CQ
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQS 70
Score = 27.8 bits (63), Expect = 0.43
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 30 EMLKEFQCSVCAKYFHRAADLKRHS-ICHTGLK 61
+ K + C C K F R L H H+G
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 39.1 bits (92), Expect = 2e-05
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 33 KEFQCSVCAKYFHRAADLKRHS-ICHTGLKPYACQ 66
K + C C K F R L H HT +P+ CQ
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 38.7 bits (91), Expect = 2e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C C F +A+ L+ H H G KP
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 23.3 bits (51), Expect = 8.7
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 53 HSICHTGLKPYACQD 67
G K + C++
Sbjct: 3 SGSSGMGEKTWKCRE 17
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 38.7 bits (91), Expect = 2e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+ +CS C K+F +A++ +H HTG KP
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 24.0 bits (53), Expect = 5.5
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 52 RHSICHTGLKPYACQD 67
G + + C D
Sbjct: 2 SSGSSGHGERGHRCSD 17
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 39.0 bits (92), Expect = 2e-05
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
K + C C K F R++ L +H HTG KPY C +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLE 47
Score = 35.5 bits (83), Expect = 5e-04
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYA 64
K ++C C K F + + L H HT
Sbjct: 41 KPYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72
Score = 25.9 bits (58), Expect = 1.6
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 50 LKRHSICHTGLKPYACQD 67
S H+G KPY C +
Sbjct: 2 SSGSSGIHSGEKPYGCVE 19
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C VC K F ++ L +H H+G +P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 24.8 bits (55), Expect = 2.8
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 52 RHSICHTGLKPYACQD 67
TG KPY CQ
Sbjct: 2 SSGSSGTGEKPYKCQV 17
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 39.8 bits (94), Expect = 3e-05
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVE 69
+ C+ C K F ++ LKRH + HTG KP+ C
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Score = 36.0 bits (84), Expect = 0.001
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYACQDVE 69
K FQC+ C K F +L+ H HTG +PY C
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 99
Score = 30.9 bits (71), Expect = 0.044
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPY 63
+ + C C K F ++ +LK H + H K
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 28.3 bits (64), Expect = 0.49
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYACQD 67
+ C C K F + +++H H G + + C +
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAE 39
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.2 bits (90), Expect = 3e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C C K ++R +L H H G K
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 23.6 bits (52), Expect = 7.6
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 53 HSICHTGLKPYACQD 67
+ KPY C+D
Sbjct: 3 SGSSGSVEKPYKCED 17
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 37.9 bits (89), Expect = 4e-05
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
++CS C K F L H HT KP
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 23.3 bits (51), Expect = 8.7
Identities = 4/15 (26%), Positives = 5/15 (33%)
Query: 53 HSICHTGLKPYACQD 67
G+ PY C
Sbjct: 3 SGSSGAGVNPYKCSQ 17
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.8 bits (89), Expect = 4e-05
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C C K F R + L RH + HTG KP
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 25.1 bits (56), Expect = 2.0
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 52 RHSICHTGLKPYAC 65
TG KPY C
Sbjct: 2 SSGSSGTGEKPYKC 15
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 38.6 bits (91), Expect = 4e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
+ ++C C K F ++DL +H HTG KPY C +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDE 51
Score = 33.2 bits (77), Expect = 0.004
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPY 63
K ++C C K F + + L H HTG P
Sbjct: 45 KPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 26.6 bits (60), Expect = 1.1
Identities = 3/19 (15%), Positives = 5/19 (26%)
Query: 49 DLKRHSICHTGLKPYACQD 67
R + Y C +
Sbjct: 5 SSGRSEWQQRERRRYKCDE 23
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 37.5 bits (88), Expect = 4e-05
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYA 64
K + C +C F LK H HTG P +
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 24.8 bits (55), Expect = 2.2
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 53 HSICHTGLKPYACQ 66
S G KPY C+
Sbjct: 2 SSGSSGGEKPYPCE 15
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 39.0 bits (92), Expect = 5e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
KEF C C ++F ++ +L H HT +PY C
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDI 50
Score = 38.6 bits (91), Expect = 8e-05
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
+ + C +C K F R L+ H H+ KP+ CQ+
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Score = 36.3 bits (85), Expect = 4e-04
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K F+C C K F ++ L H H
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 26.6 bits (60), Expect = 1.6
Identities = 2/19 (10%), Positives = 5/19 (26%)
Query: 49 DLKRHSICHTGLKPYACQD 67
+ K + C+
Sbjct: 4 GSSGGRLPSKTKKEFICKF 22
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 5e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+ F+C+ C K F R + L H H+ K
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 38.7 bits (91), Expect = 5e-05
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
K + C C F R+ +L RH HTG +P+ CQ +R+
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA 74
Score = 36.7 bits (86), Expect = 2e-04
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVE 69
+ C K + +++ LK H HTG KPY C
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDG 42
Score = 25.6 bits (57), Expect = 2.6
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICH 57
+ FQC C + F R+ L H H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.5 bits (88), Expect = 5e-05
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQ 66
K F+C C K F+ + H H+G KP
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 5e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K + C C K F +A+L RH HTG KP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 2.5
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 52 RHSICHTGLKPYACQD 67
+G KPY C
Sbjct: 2 SSGSSGSGEKPYVCDY 17
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 5e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C C K F + L +H HTG +
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 38.3 bits (90), Expect = 5e-05
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
F CS C K F R + RH+ G ++
Sbjct: 46 AAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGEN 80
Score = 33.3 bits (77), Expect = 0.005
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTG----LKPYAC 65
K + CS C K F + L H + + C
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVC 50
Score = 25.2 bits (56), Expect = 3.7
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 50 LKRHSICHTGLKPYAC 65
HTG KPYAC
Sbjct: 3 SGSSGRTHTGEKPYAC 18
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 5e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K + C C K F RA L +H H+G KP
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 23.6 bits (52), Expect = 7.4
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 53 HSICHTGLKPYACQD 67
TG K Y C++
Sbjct: 3 SGSSGTGEKLYNCKE 17
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 38.2 bits (90), Expect = 6e-05
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
K ++C C F +L H HTG KPY C
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNI 50
Score = 35.9 bits (84), Expect = 3e-04
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPY 63
K ++C++C F+R A+LK H+ H+G KPY
Sbjct: 44 KPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 27.4 bits (62), Expect = 0.54
Identities = 6/18 (33%), Positives = 6/18 (33%)
Query: 50 LKRHSICHTGLKPYACQD 67
HS KPY C
Sbjct: 5 HHHHSHMTHSDKPYKCDR 22
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 39.0 bits (92), Expect = 6e-05
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
+ F CSVC + F R +L+ H + HTG PY C
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSS 99
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+C C K F LK H+ HTG KP+ C
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFEC 38
Score = 35.9 bits (84), Expect = 8e-04
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 33 KEFQCSVCAKYFHRAADLKRH---SICHTGLKPYACQD 67
K F+C C K + R +L H + + + + C
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV 71
Score = 25.5 bits (57), Expect = 4.6
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSI-CHTGLK 61
++CS C++ F + DL+ H I H+G
Sbjct: 93 MPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 6e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K + C+VC K F +A L +H HT
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 23.6 bits (52), Expect = 6.8
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 52 RHSICHTGLKPYAC 65
TG KPY+C
Sbjct: 2 SSGSSGTGEKPYSC 15
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 6e-05
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C VC K F +++ L+ H HTG KP
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 23.3 bits (51), Expect = 8.5
Identities = 4/15 (26%), Positives = 4/15 (26%)
Query: 53 HSICHTGLKPYACQD 67
G K Y C
Sbjct: 3 SGSSGMGEKCYKCDV 17
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 6e-05
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
F CS C K F +L H HTG +P
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 37.1 bits (87), Expect = 6e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K F+C+ C K F +L H HTG K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 7e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++CS C K F + L+ H CHTG +
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 24.0 bits (53), Expect = 5.4
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 53 HSICHTGLKPYACQD 67
TG KPY C D
Sbjct: 3 SGSSGTGEKPYKCSD 17
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.2 bits (87), Expect = 7e-05
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K +C+ C K F + L H H K
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 7e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++CS C K FHR L H HTG +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 24.8 bits (55), Expect = 2.6
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 52 RHSICHTGLKPYAC 65
+G KPY C
Sbjct: 2 SSGSSGSGEKPYKC 15
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 7e-05
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K F C C K F L +H HTG KP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 7e-05
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K F+CS C K F+ ++L H HTG KP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 2.9
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 52 RHSICHTGLKPYAC 65
TG KP+ C
Sbjct: 2 SSGSSGTGEKPFEC 15
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 7e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQ 66
+ + C+VC K F ++L +H HTG KP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 25.1 bits (56), Expect = 2.2
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 52 RHSICHTGLKPYACQD 67
TG +PY C
Sbjct: 2 SSGSSGTGERPYICTV 17
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 7e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C C K + R DL H HTG K
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 8e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++CS C K F R + L H HTG +
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 25.2 bits (56), Expect = 2.2
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 52 RHSICHTGLKPYACQD 67
TG KPY C D
Sbjct: 2 SSGSSGTGEKPYKCSD 17
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 8e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K F+C C K F + + L H HTG KP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 1.7
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 52 RHSICHTGLKPYACQD 67
+G KP+ C++
Sbjct: 2 SSGSSGSGEKPFKCEE 17
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 8e-05
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F + + L RH HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 37.8 bits (88), Expect = 9e-05
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHT---GLKPYACQ 66
QC +C + A L H H + C+
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCE 42
Score = 35.1 bits (81), Expect = 0.001
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 33 KEFQCSVCAKYFHRAADLKRH-SICHTGLKPYACQ 66
F C C K F + + H S H L +
Sbjct: 37 LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQE 71
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 36.7 bits (86), Expect = 9e-05
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYA 64
K ++C C F + A L+ H + HTG P +
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 24.4 bits (54), Expect = 3.2
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 53 HSICHTGLKPYACQD 67
S G KPY C+
Sbjct: 2 SSGSSGGEKPYKCET 16
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.8 bits (86), Expect = 9e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C C K F DL H + HTG KP
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 23.3 bits (51), Expect = 9.7
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 53 HSICHTGLKPYACQD 67
TG KPY C++
Sbjct: 3 SGSSGTGEKPYKCEE 17
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 9e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K F+C+ C K F R + L H HTG KP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.8 bits (86), Expect = 1e-04
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K FQC C K F + + L H HTG KP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 24.4 bits (54), Expect = 4.0
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 52 RHSICHTGLKPYACQ 66
+G KP+ C+
Sbjct: 2 SSGSSGSGEKPFQCE 16
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.8 bits (86), Expect = 1e-04
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K FQC C F + L +H H P
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 23.3 bits (51), Expect = 8.3
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 53 HSICHTGLKPYACQ 66
TG KP+ C+
Sbjct: 3 SGSSGTGEKPFQCK 16
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 1e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++CS+C K F + + L H HTG KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 24.0 bits (53), Expect = 4.2
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 52 RHSICHTGLKPYACQD 67
TG KPY C
Sbjct: 2 SSGSSGTGEKPYECSI 17
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.8 bits (86), Expect = 1e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K QC C + F + L +H HTG KP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 24.0 bits (53), Expect = 5.5
Identities = 2/14 (14%), Positives = 4/14 (28%)
Query: 52 RHSICHTGLKPYAC 65
+ K + C
Sbjct: 2 SSGSSGSSTKSHQC 15
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 1e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K F+C C K +++ L +H HTG KP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 2.2
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 52 RHSICHTGLKPYACQD 67
TG KP+ C +
Sbjct: 2 SSGSSGTGEKPFKCGE 17
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 1e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F + + L RH HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 23.2 bits (51), Expect = 8.6
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 53 HSICHTGLKPYAC 65
TG KPY C
Sbjct: 3 SGSSGTGKKPYKC 15
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 1e-04
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K F+C C K F + L H HTG KP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 24.0 bits (53), Expect = 4.4
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 52 RHSICHTGLKPYACQD 67
+G KP+ C++
Sbjct: 2 SSGSSGSGEKPFKCKE 17
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 1e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F + + L RH HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 1e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F + + L RH HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 25.1 bits (56), Expect = 2.1
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 52 RHSICHTGLKPYAC 65
TG KPY C
Sbjct: 2 SSGSSGTGEKPYKC 15
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 1e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F + L RH HTG KP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 24.0 bits (53), Expect = 4.7
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 52 RHSICHTGLKPYAC 65
TG KPY C
Sbjct: 2 SSGSSGTGEKPYKC 15
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 36.4 bits (85), Expect = 1e-04
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
K + C C K F A+ L +H H+G KP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 24.8 bits (55), Expect = 2.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 52 RHSICHTGLKPYACQD 67
TG KPY C++
Sbjct: 2 SSGSSGTGEKPYNCKE 17
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 1e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F ++L H + HTG KP
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 36.3 bits (85), Expect = 1e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K F+C+ C K F ++ L H HTG KP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 24.4 bits (54), Expect = 3.2
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 52 RHSICHTGLKPYACQD 67
TG KP+ C +
Sbjct: 2 SSGSSGTGEKPFECAE 17
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 1e-04
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
++C C K F R L H H G KP
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 23.6 bits (52), Expect = 7.1
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 52 RHSICHTGLKPYACQD 67
TG PY C +
Sbjct: 2 SSGSSGTGENPYECHE 17
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 1e-04
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQ 66
K ++C VC K F + L H HTG KP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 23.6 bits (52), Expect = 6.0
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 53 HSICHTGLKPYAC 65
TG KPY C
Sbjct: 3 SGSSGTGEKPYKC 15
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 1e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C C K ++ +L H HTG +P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 23.6 bits (52), Expect = 7.7
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 53 HSICHTGLKPYACQD 67
TG KPY C+
Sbjct: 3 SGSSGTGEKPYKCEK 17
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 36.3 bits (85), Expect = 1e-04
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
++CS C K F+R L H H G +
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 1e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K + C+ C K F ++L +H HT KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 36.7 bits (86), Expect = 1e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+CS C+ A L+ H H +P+ C
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKC 40
Score = 29.4 bits (67), Expect = 0.074
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+ F+C+ C+ + ++L +H G
Sbjct: 36 RPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 1e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++CS C K F + + L H HTG P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 23.7 bits (52), Expect = 6.6
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 53 HSICHTGLKPYACQD 67
TG KPY C D
Sbjct: 3 SGSSGTGEKPYECSD 17
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 1e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C C K F + A+L +H HTG KP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 24.4 bits (54), Expect = 3.4
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 52 RHSICHTGLKPYAC 65
TG KPY C
Sbjct: 2 SSGSSGTGEKPYRC 15
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 36.0 bits (84), Expect = 2e-04
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K F+C C K F R + L H HTG KP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 2e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+ ++CS C K F R + L H HTG KP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 24.0 bits (53), Expect = 4.3
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 52 RHSICHTGLKPYACQD 67
TG + Y C +
Sbjct: 2 SSGSSGTGERHYECSE 17
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 36.0 bits (84), Expect = 2e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F R + L +H HTG KP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 24.4 bits (54), Expect = 3.3
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 52 RHSICHTGLKPYAC 65
TG K Y C
Sbjct: 2 SSGSSGTGEKRYKC 15
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 2e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K + C C K F + L+ H HTG KP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 2.4
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 52 RHSICHTGLKPYACQD 67
TG KPY C++
Sbjct: 2 SSGSSGTGEKPYNCEE 17
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 2e-04
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C VC+K F + A L +H HTG KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 23.6 bits (52), Expect = 6.4
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 52 RHSICHTGLKPYACQD 67
TG KPY C+
Sbjct: 2 SSGSSGTGEKPYECKV 17
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 2e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K + C+ C K F + + L RH HTG KP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 23.2 bits (51), Expect = 9.3
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 53 HSICHTGLKPYAC 65
TG KPY C
Sbjct: 3 SGSSGTGEKPYIC 15
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 37.4 bits (88), Expect = 2e-04
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+ + C VC K F L H HTG+KPY C
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Score = 35.1 bits (82), Expect = 0.001
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
K + C C K F + RH H GL+PY C
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGV 42
Score = 32.4 bits (75), Expect = 0.013
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C++CAK F RH + K Y
Sbjct: 64 KPYECNICAKRFMWRDSFHRHV--TSCTKSYEA 94
Score = 24.3 bits (54), Expect = 9.6
Identities = 6/14 (42%), Positives = 7/14 (50%), Gaps = 1/14 (7%)
Query: 53 HSICHTGLKPYACQ 66
S +G K Y CQ
Sbjct: 2 SSG-SSGDKLYPCQ 14
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 2e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F + + L H HTG+KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 24.4 bits (54), Expect = 3.3
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 52 RHSICHTGLKPYAC 65
TG KPY C
Sbjct: 2 SSGSSGTGEKPYKC 15
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 35.9 bits (84), Expect = 2e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C C K F + L +H HTG KP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 24.0 bits (53), Expect = 5.6
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 52 RHSICHTGLKPYACQD 67
TG KPY C++
Sbjct: 2 SSGSSGTGEKPYECKE 17
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 2e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K +QC+ C K F + + L RH HTG KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 38.0 bits (89), Expect = 2e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYAC 65
K F+C C + F ++D K+H HT K
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 36.5 bits (85), Expect = 7e-04
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYACQDVE 69
K F C C K F R+ +LK H HTG KP+ C+
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG 127
Score = 36.1 bits (84), Expect = 0.001
Identities = 6/38 (15%), Positives = 8/38 (21%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVER 70
C + F +L H P V
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Score = 33.8 bits (78), Expect = 0.007
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 37 CSVCAKYFHRAADLKRHSICHTGLKPYACQDVE 69
C K F L H HTG KP+ C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPG 97
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 36.0 bits (84), Expect = 2e-04
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K + CS CAK F + L H HTG+KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 25.6 bits (57), Expect = 1.4
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 52 RHSICHTGLKPYACQD 67
TG+KPY C
Sbjct: 2 SSGSSGTGVKPYGCSQ 17
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 2e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+ +C+ C K F ++A L +H HTG KP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 24.0 bits (53), Expect = 4.5
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 52 RHSICHTGLKPYAC 65
TG +P+ C
Sbjct: 2 SSGSSGTGERPHKC 15
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 2e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F ++L H HTG KP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 35.6 bits (83), Expect = 2e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+ ++C C K F + L H HTG KP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 24.4 bits (54), Expect = 3.6
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 52 RHSICHTGLKPYAC 65
TG +PY C
Sbjct: 2 SSGSSGTGQRPYEC 15
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 3e-04
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++CSVC K F L H H+G KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 23.6 bits (52), Expect = 6.0
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 52 RHSICHTGLKPYACQD 67
TG KPY C
Sbjct: 2 SSGSSGTGEKPYECSV 17
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 3e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K + CS C K F + L H H+G KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 25.2 bits (56), Expect = 1.8
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 52 RHSICHTGLKPYAC 65
G KPY C
Sbjct: 2 SSGSSGAGEKPYGC 15
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 3e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K + C+ C K F + L H + HTG KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 2.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 52 RHSICHTGLKPYACQD 67
TG+KPY C +
Sbjct: 2 SSGSSGTGVKPYMCNE 17
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.5 bits (83), Expect = 3e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K + C+ C K F + L H+ HTG +
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 24.4 bits (54), Expect = 3.8
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 52 RHSICHTGLKPYAC 65
TG+KPY C
Sbjct: 2 SSGSSGTGMKPYVC 15
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 37.8 bits (89), Expect = 3e-04
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C C K F DL RH HTG KPY C
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Score = 37.0 bits (87), Expect = 5e-04
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
K + C C K F + A L+ H HTG KPY C +
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE 138
Score = 37.0 bits (87), Expect = 6e-04
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C C K F R +L H HTG KPY C
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Score = 37.0 bits (87), Expect = 6e-04
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQD 67
K + C C K F R+ L H HTG KPY C +
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPE 54
Score = 36.7 bits (86), Expect = 7e-04
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C C K F + A+L+ H HTG KPYAC
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108
Score = 29.3 bits (67), Expect = 0.26
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKP 62
K ++C C K F R L H HTG K
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 28.9 bits (66), Expect = 0.40
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 44 FHRAADLKRHSICHTGLKPYAC 65
++ + G KPYAC
Sbjct: 3 EFGSSSSVAQAALEPGEKPYAC 24
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 3e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C VC K F A L +H H+G KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 23.2 bits (51), Expect = 9.7
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 53 HSICHTGLKPYAC 65
TG KPY C
Sbjct: 3 SGSSGTGEKPYEC 15
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
+ ++CS C K F + + L H H G KP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 23.6 bits (52), Expect = 7.3
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 53 HSICHTGLKPYAC 65
TG + Y C
Sbjct: 3 SGSSGTGERHYEC 15
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 3e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F + + L H HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 24.4 bits (54), Expect = 3.6
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 52 RHSICHTGLKPYAC 65
+G KPY C
Sbjct: 2 SSGSSGSGEKPYKC 15
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 35.0 bits (81), Expect = 3e-04
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLK 61
+ F C VC + F R LKRH HT K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 3e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C C K F + +H HTG +P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 23.3 bits (51), Expect = 8.1
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 53 HSICHTGLKPYACQD 67
TG KPY C +
Sbjct: 3 SGSSGTGEKPYKCME 17
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 3e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K + C+ C K F + + L H HTG KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 4e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F + + L RH HTG KP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 24.4 bits (54), Expect = 3.4
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 52 RHSICHTGLKPYAC 65
TG KPY C
Sbjct: 2 SSGSSGTGEKPYKC 15
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 4e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F + L H H+G KP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 23.7 bits (52), Expect = 6.3
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 52 RHSICHTGLKPYAC 65
TG KPY C
Sbjct: 2 SSGSSGTGEKPYKC 15
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.1 bits (82), Expect = 4e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F+ ++L H HTG +
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 4e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K F+C+ C K F +++ L H HTG KP
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 34.8 bits (81), Expect = 4e-04
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
++C C K F R L H H+G +
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 35.7 bits (83), Expect = 5e-04
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 35 FQCSV--CAKYFHRAADLKRHSICHTGLKPYACQ 66
+ C C K F + LK H HT PY C
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 35
Score = 34.1 bits (79), Expect = 0.002
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYAC 65
++C C K F + LKRH H G
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 34.9 bits (81), Expect = 5e-04
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYA 64
+ ++C C K F + L H HTG P +
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 6e-04
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K +C C K F + L H HTG P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 25.2 bits (56), Expect = 1.8
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 52 RHSICHTGLKPYACQD 67
TG KP+ C++
Sbjct: 2 SSGSSGTGEKPHECRE 17
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 9e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F + L H HTG KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 24.0 bits (53), Expect = 5.0
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 52 RHSICHTGLKPYAC 65
TG KPY C
Sbjct: 2 SSGSSGTGEKPYEC 15
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 34.0 bits (79), Expect = 0.001
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K ++C+ C K F + L H H G+ +
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 24.8 bits (55), Expect = 2.6
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 52 RHSICHTGLKPYAC 65
+G KPY C
Sbjct: 2 SSGSSGSGEKPYEC 15
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 33.7 bits (78), Expect = 0.001
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 33 KEFQCSVCAKYFHRAADLKRHS-ICHTGLKPYAC 65
K ++C C K F + L RH HTG KP
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 24.4 bits (54), Expect = 3.7
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 53 HSICHTGLKPYACQD 67
TG KPY C +
Sbjct: 3 SGSSGTGKKPYECIE 17
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 33.7 bits (78), Expect = 0.001
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYA 64
K ++C C K F + L H HTG P +
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 23.7 bits (52), Expect = 5.7
Identities = 6/15 (40%), Positives = 6/15 (40%)
Query: 53 HSICHTGLKPYACQD 67
S G KPY C
Sbjct: 2 SSGSSGGEKPYRCDQ 16
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 35.6 bits (83), Expect = 0.001
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 33 KEFQCSVCAKYFHRAADLKRH---SICHTGLKPYACQ 66
+ + C++ F L H H K + C
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCH 38
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 33 KEFQC--SVCAKYFHRAADLKRHSIC-HTGLKPYACQDVE 69
K + C C+K F A+D +H H+ KPY C+
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPG 135
Score = 34.5 bits (80), Expect = 0.004
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYACQ 66
K +C+ C K + R +LK H HTG KPY C+
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Score = 34.1 bits (79), Expect = 0.004
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 37 CSVCAKYFHRAADLKRHSICHTGLKPYACQDVE 69
CS + F L H HTG KP+ C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEG 74
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 36.0 bits (84), Expect = 0.001
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 33 KEFQCS--VCAKYFHRAADLKRHSICHTGLKPYAC 65
K F C C K F L RHS+ HTG K + C
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 75
Score = 35.3 bits (82), Expect = 0.003
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLKPYAC 65
K + CS C +++ L+ H HTG KP+ C
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPC 45
Score = 33.3 bits (77), Expect = 0.012
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 8/44 (18%)
Query: 24 EKRRKYEMLKEFQCSV--CAKYFHRAADLKRHSICHTGLKPYAC 65
K Y C C K F + LK H HT PY C
Sbjct: 100 IKICVYV------CHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137
Score = 31.8 bits (73), Expect = 0.039
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 33 KEFQCS--VCAKYFHRAADLKRHSICHTGLK--PYACQDVE 69
K F C C F A++K+H +K Y C
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFEN 111
Score = 30.6 bits (70), Expect = 0.10
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 33 KEFQCS--VCAKYFHRAADLKRHSICHTGLKPYAC 65
++C C K F + LKRH H G
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 167
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.6 bits (75), Expect = 0.004
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K C C K F + L+ H H G K
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 31.5 bits (72), Expect = 0.008
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYA 64
+ C C K F + L H + P +
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 32.6 bits (74), Expect = 0.008
Identities = 9/29 (31%), Positives = 9/29 (31%)
Query: 37 CSVCAKYFHRAADLKRHSICHTGLKPYAC 65
C K F L H HTG K
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 28.4 bits (63), Expect = 0.35
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 4/38 (10%)
Query: 33 KEFQCSVCAKYFHRAADLKRH-SICHTGLKP---YACQ 66
C + F +L H ++ H G + C
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.6 bits (70), Expect = 0.019
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K + C+ C K F R L RH HT +
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 30.4 bits (69), Expect = 0.022
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYAC 65
K + C+ C + F L +H HT +
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 23.4 bits (51), Expect = 6.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 54 SICHTGLKPYACQD 67
S +G KPY+C +
Sbjct: 2 SSGSSGEKPYSCAE 15
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 29.9 bits (68), Expect = 0.025
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLK 61
+ F C+ C K F R+ +L+RH HTG K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 30.8 bits (69), Expect = 0.027
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYA 64
K C C K + A L + +G K
Sbjct: 38 KTPMCEKCRKDSCQEAALNKDEGNESGKKTSG 69
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 29.7 bits (66), Expect = 0.063
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
+ C C + + LK+H HT ++PY C S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFS 38
Score = 24.3 bits (52), Expect = 6.1
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 27 RKYEMLKEFQCSVCAKYFHRAADLKRHSICHTGLK 61
R + ++ + C+ C F +L +H K
Sbjct: 22 RTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 29.0 bits (64), Expect = 0.079
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 33 KEFQCSVCAKYFHR-AADLKRHSICHTGLK 61
+ +C C YF + +DL+RH H G+K
Sbjct: 8 RAMKCPYCDFYFMKNGSDLQRHIWAHEGVK 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.091
Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 32/125 (25%)
Query: 10 ITLTQEEIEARERE-EKRRKYE----MLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYA 64
I L I+A R K + YE +L Q + F +L
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----NLS------------- 265
Query: 65 CQDVERSPPVMLMVVKTGEIGIAENRHKTVENHQKAVKIPPTETEGQTHGPMAETLDLGS 124
C+ +++ T + + H T T + + + LD
Sbjct: 266 CK----------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 125 RDLKK 129
+DL +
Sbjct: 316 QDLPR 320
Score = 27.1 bits (59), Expect = 2.2
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 7 KELITLTQEEIEAREREEKRRKYEMLKEFQCSV 39
+L T+ + + E E R+ ++ L F S
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 28.3 bits (63), Expect = 0.12
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTG 59
F+CS C + F + L +H H
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHAR 37
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.13
Identities = 6/55 (10%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 3 KEEDKELITLTQEE----IEAREREEKRRKYEMLKEFQCSVCAKYFHRAADLKRH 53
++ E I +EE ++ + K + E ++ + + ++ ++++
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.18
Identities = 16/72 (22%), Positives = 21/72 (29%), Gaps = 42/72 (58%)
Query: 24 EKRRKYEMLKEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERSPPVMLMVVKTGE 83
EK+ LK+ Q S LK YA D S P + +K
Sbjct: 18 EKQA----LKKLQAS---------------------LKLYA-DD---SAPA--LAIKA-- 44
Query: 84 IGIAENRHKTVE 95
T+E
Sbjct: 45 ---------TME 47
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.2 bits (62), Expect = 0.18
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLK 61
K QC C + F + L H + H G K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 29.8 bits (66), Expect = 0.24
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICH 57
+QC VC+ DL H H
Sbjct: 179 HGYQCHVCSAVLFSPLDLDAHVASH 203
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 27.3 bits (61), Expect = 0.31
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICH 57
K FQC C + F R+ L H H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.8 bits (57), Expect = 1.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 57 HTGLKPYACQDVERS 71
TG+KP+ C D +RS
Sbjct: 6 STGIKPFQCPDCDRS 20
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.2 bits (59), Expect = 0.37
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTG 59
+C C K F ++ L H H G
Sbjct: 13 SECQECGKIFRHSSLLIEHQALHAG 37
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.8 bits (58), Expect = 0.47
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTG 59
K + C VC F R + H H G
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.0 bits (57), Expect = 0.71
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLK 61
F C C K F R+ L H + H K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.0 bits (57), Expect = 0.82
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSI-CHTG 59
K + C +C + F R L RH+ H+G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 25.6 bits (56), Expect = 1.0
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTGLKP 62
F C C K F R+ L +H H L
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 25.5 bits (55), Expect = 1.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 32 LKEFQCSVCAKYFHRAADLKRHSICHTGLK 61
+K + C C + F L+RH HTG K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 1.5
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 32 LKEFQCSVCAKYFHRAADLKRHSICHTGLK 61
K F C C K F L+ H HT K
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 25.0 bits (54), Expect = 2.1
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHT 58
+ + C C K F R DL RH H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 24.8 bits (53), Expect = 2.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 32 LKEFQCSVCAKYFHRAADLKRHSICHTG 59
++ + CSVC K F ++ H HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 26.3 bits (57), Expect = 2.5
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 33 KEFQCSVCAKYFHRAADLKRH 53
K +C C F DL H
Sbjct: 79 KVLKCMYCGHSFESLQDLSVH 99
Score = 25.5 bits (55), Expect = 4.9
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 33 KEFQCSVCAKYFHRAADLKRH--SICHTGLKPYACQ 66
+F+C C+ + +L H H +
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETD 53
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 24.2 bits (53), Expect = 3.1
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLK 61
K+ C + C K + + + L+ H HTG +
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 24.3 bits (52), Expect = 3.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 35 FQCSVCAKYFHRAADLKRH 53
F C C K F R+ L +H
Sbjct: 3 FACPACPKRFMRSDALSKH 21
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain,
winged helix domain, binding, transcription; 2.10A
{Homo sapiens} PDB: 3s32_A
Length = 177
Score = 26.3 bits (57), Expect = 3.3
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 23 EEKRRKYEMLKEFQCSVCAKYFH 45
EE R+ E QC +C K+F
Sbjct: 10 EENGRQLGE-VELQCGICTKWFT 31
>1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg
IONS, pyrophosphate, transition state analogue; HET:
IMU; 1.75A {Giardia intestinalis} SCOP: c.61.1.1 PDB:
1dqp_A*
Length = 230
Score = 26.1 bits (58), Expect = 3.8
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 1 MIKEEDKELITL-TQEEIEARERE---EKRRKYEMLKEFQCSVC----AKYFHRAADLKR 52
+++ E K+ L T EE +A + Y+ + E V A + A+ L
Sbjct: 24 VLESEVKKFHLLATFEECKALAADTARRMNEYYKDVAEPVTLVALLTGAYLY--ASLLTV 81
Query: 53 H 53
H
Sbjct: 82 H 82
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 24.7 bits (54), Expect = 4.2
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 30 EMLKEFQCSVCAKYFHRAADLKR--HSICHT 58
E+ CS+C Y A + H+ C +
Sbjct: 11 ELTPYILCSICKGYLIDATTITECLHTFCKS 41
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 24.0 bits (51), Expect = 4.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLK 61
K QC +C K F +A+ L H HTG K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 25.8 bits (56), Expect = 4.8
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 12 LTQEEIEAREREEKRRKYEMLKEFQCSVCAKYFHRA-ADLKRH 53
+ + + ++ +C C + F R LK H
Sbjct: 147 VKIDTPTSNLPTRGTLTSLFQEDLKCWRCGETFGRHFTKLKAH 189
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 25.5 bits (55), Expect = 6.0
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 100 AVKIPPTETEGQTHGPMAETLDLGSRDLKKC 130
A+++PP E + M D KKC
Sbjct: 175 AIELPPNEILFSENNDMDNNNDGVDELNKKC 205
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 25.7 bits (55), Expect = 6.1
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 35 FQCSVCAKYFHRAADLKRHSICH 57
F C A +F + A H +
Sbjct: 419 FGCRDSADHFEQMAAASMHQVRS 441
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 24.9 bits (53), Expect = 7.2
Identities = 5/39 (12%), Positives = 9/39 (23%)
Query: 19 AREREEKRRKYEMLKEFQCSVCAKYFHRAADLKRHSICH 57
E + +QC +C + H
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC 39
Score = 24.9 bits (53), Expect = 7.6
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 21 EREEKRRKYEMLKEFQCSVCAKYFHRAADLKRH 53
E +++ K+ C C + F + + RH
Sbjct: 56 ELKQEHESKCEYKKLTCLECMRTFKSSFSIWRH 88
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 25.2 bits (54), Expect = 7.7
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 2 IKEEDKELITLTQEEIEAREREEKRRKYEMLKEFQCSV---CAKYFHRAADLKRHSI 55
+ ++ E A E EEKRR Y L E + ++ RA + ++ +
Sbjct: 160 VNRLHAQMQAFVSESKRAAELEEKRR-YRFLAEKHLLLSNTFLQFLGRARGMLQNRV 215
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 24.5 bits (52), Expect = 9.3
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
+F C +C F + LK+H C ++
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKE 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.383
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,046,191
Number of extensions: 114172
Number of successful extensions: 734
Number of sequences better than 10.0: 1
Number of HSP's gapped: 715
Number of HSP's successfully gapped: 369
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)