RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1793
(135 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 40.7 bits (96), Expect = 1e-06
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 33 KEFQCSVCAKYFHRAADLKRHS-ICHTGLKPYACQ 66
K + C C K F R L H HT +P+ CQ
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 36.6 bits (85), Expect = 3e-05
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 35 FQCS--VCAKYFHRAADLKRHSICHTGLKPYACQ 66
F C C K F+ LK H H+ + Y C+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 33.4 bits (77), Expect = 5e-04
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLK 61
+ F C VC + F R LKRH HT K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 32.3 bits (74), Expect = 0.001
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLK 61
K+F C C K F R+ L +H H K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 31.8 bits (73), Expect = 0.002
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTG 59
K FQC +C + F R+ L H HTG
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG 28
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 32.0 bits (72), Expect = 0.002
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYA 64
K+ C +C K F L RH + H+G KPY+
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 35
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 31.4 bits (72), Expect = 0.002
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTG 59
K + C C K F R++ L +H HTG
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQRVHTG 32
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 29.2 bits (65), Expect = 0.017
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 37 CSVCAKYFHRAADLKRHSICHTG 59
C+ C K F ++ LKRH + HTG
Sbjct: 5 CAECGKAFVESSKLKRHQLVHTG 27
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 29.3 bits (66), Expect = 0.019
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTG 59
K + CS C K F + L H +
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHD 33
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 28.8 bits (65), Expect = 0.025
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTGLK 61
+ F C+ C K F R+ +L+RH HTG K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 28.8 bits (65), Expect = 0.027
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTG 59
+ + C V C + F R+ADL RH HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 27.9 bits (63), Expect = 0.044
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHT 58
K ++C C K F + + L H HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 28.1 bits (63), Expect = 0.047
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHT 58
+ + C C K F ++ +LK H + H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 27.7 bits (62), Expect = 0.060
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTG 59
K +C+ C K + R +LK H HTG
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG 29
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.6 bits (62), Expect = 0.070
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTG 59
K ++C +C F ++ +K H +
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKHT 33
Score = 21.9 bits (47), Expect = 8.0
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 57 HTGLKPYACQDVERS 71
H+G KPY C
Sbjct: 3 HSGEKPYECYICHAR 17
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 27.4 bits (60), Expect = 0.082
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTG 59
F CSVC + F R +L+ H + HTG
Sbjct: 5 FTCSVCQETFRRRMELRLHMVSHTG 29
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 27.3 bits (61), Expect = 0.087
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTG 59
K FQC+ C K F +L+ H HTG
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 29
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 26.9 bits (60), Expect = 0.11
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTG 59
+ + C C K F R DL RH H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 27.0 bits (59), Expect = 0.13
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 36 QCSVCAKYFHRAADLKRHSICHTG 59
+C VC K F R LK H CHTG
Sbjct: 3 KCEVCGKCFSRKDKLKTHMRCHTG 26
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 27.0 bits (60), Expect = 0.14
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTG 59
+ F C +C F A+ RH HT
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTD 32
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 27.0 bits (60), Expect = 0.15
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTG 59
+ ++C C K F ++DL +H HTG
Sbjct: 11 RRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 25.5 bits (56), Expect = 0.45
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 52 RHSICHTGLKPYACQDVERS 71
R + Y C + +S
Sbjct: 2 RSEWQQRERRRYKCDECGKS 21
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 26.7 bits (59), Expect = 0.16
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICH 57
K F C +C + F R+ + KRH+ H
Sbjct: 2 KPFACDICGRKFARSDERKRHTKIH 26
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 25.8 bits (57), Expect = 0.34
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTG 59
K FQC C + F R+ L H H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 22.8 bits (49), Expect = 4.2
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 53 HSICHTGLKPYAC 65
+ TG+KP+ C
Sbjct: 2 STRGSTGIKPFQC 14
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 25.8 bits (56), Expect = 0.46
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 26 RRKYEMLKEFQCSVCAKYFHRAADLKRHSICH 57
+ L+ + C VC K F L H H
Sbjct: 22 MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 24.6 bits (53), Expect = 1.2
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICHTGLKPYACQDVERS 71
K + C C K F + RH H GL+PY C +
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKK 39
>d2b5ua2 b.110.1.1 (A:84-315) Colicin E3 N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 232
Score = 25.2 bits (55), Expect = 2.6
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 12 LTQEEIEAREREEKRRKYE 30
L+ ++++ R+ EE RR+ E
Sbjct: 208 LSPDQVKQRQDEENRRQQE 226
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 23.5 bits (51), Expect = 3.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 32 LKEFQCSVCAKYFHRAADLKRH 53
+C CA+YF + +LK H
Sbjct: 13 GGLHRCLACARYFIDSTNLKTH 34
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 23.0 bits (49), Expect = 5.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 35 FQCSVCAKYFHRAADLKRHSICH 57
C +C K F A L++H H
Sbjct: 7 LPCGLCGKVFTDANRLRQHEAQH 29
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 22.8 bits (48), Expect = 5.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 35 FQCSVCAKYFHRAADLKRHSICHTG 59
F CS C K F R + RH+ G
Sbjct: 5 FVCSKCGKTFTRRNTMARHADNCAG 29
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 22.1 bits (47), Expect = 6.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 35 FQCSVCAKYFHRAADLKRH 53
+ C +C + F R L RH
Sbjct: 2 YPCGLCNRAFTRRDLLIRH 20
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 21.9 bits (46), Expect = 7.1
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 33 KEFQCSV--CAKYFHRAADLKRHSICHTG 59
K F C C K F L RHS+ HTG
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTG 29
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 22.0 bits (47), Expect = 7.5
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 33 KEFQCSVCAKYFHRAADLKRHSICH 57
+ + CS C + F A L H H
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVH 28
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 22.0 bits (46), Expect = 8.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 36 QCSVCAKYFHRAADLKRHSICHTGLK 61
+C C K F LK H+ HTG K
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGEK 27
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 26
Score = 21.7 bits (45), Expect = 9.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 35 FQCSVCAKYFHRAADLKRHSI 55
++CS C++ F + DL+ H I
Sbjct: 3 YKCSSCSQQFMQKKDLQSHMI 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.383
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 497,333
Number of extensions: 22102
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 67
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.5 bits)