BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17930
         (110 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Y485|DMXL1_HUMAN DmX-like protein 1 OS=Homo sapiens GN=DMXL1 PE=1 SV=3
          Length = 3027

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 25/31 (80%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLI 49
             SV N+L+T C+DN+CRLWVET LP+D L+
Sbjct: 248 RASVCNVLLTCCKDNVCRLWVETFLPNDCLL 278


>sp|Q8TDJ6|DMXL2_HUMAN DmX-like protein 2 OS=Homo sapiens GN=DMXL2 PE=1 SV=2
          Length = 3036

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 25/30 (83%)

Query: 20  GSVSNMLVTSCRDNICRLWVETVLPDDGLI 49
           GSV N+L+TSC D +CRLW ET+LP+D L+
Sbjct: 250 GSVCNVLLTSCHDGVCRLWAETLLPEDCLL 279


>sp|Q8BPN8|DMXL2_MOUSE DmX-like protein 2 OS=Mus musculus GN=Dmxl2 PE=1 SV=3
          Length = 3032

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 25/31 (80%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLI 49
            GSV N+L+TSC D +CRLW ET+LP+D L+
Sbjct: 249 RGSVCNVLLTSCHDGVCRLWAETLLPEDCLL 279


>sp|Q6PNC0|DMXL1_MOUSE DmX-like protein 1 OS=Mus musculus GN=Dmxl1 PE=1 SV=1
          Length = 3013

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 19  EGSVSNMLVTSCRDNICRLWVETVLPDDGLI 49
             SV N+L+T C+DN+CRLWVET LP+D  +
Sbjct: 246 RASVCNVLLTCCKDNVCRLWVETFLPNDCFL 276


>sp|P57748|MMP20_MOUSE Matrix metalloproteinase-20 OS=Mus musculus GN=Mmp20 PE=2 SV=1
          Length = 482

 Score = 30.8 bits (68), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 42 VLPDDGLINMSQFDPMAAQNPKFIQVTPTLDRDMYNLLQCGMDTYLATEG 91
          VLP  GL  +      A  +P  +  TP   R  Y+L Q  +D Y   +G
Sbjct: 3  VLPASGLAVLVTALKFATADPNLLAATPRTFRSNYHLAQAYLDKYYTKKG 52


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,582,668
Number of Sequences: 539616
Number of extensions: 1427818
Number of successful extensions: 2198
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2189
Number of HSP's gapped (non-prelim): 12
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)