Query psy17930
Match_columns 110
No_of_seqs 49 out of 51
Neff 2.6
Searched_HMMs 46136
Date Fri Aug 16 17:47:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1064|consensus 99.6 3.3E-17 7.2E-22 157.2 1.9 53 3-55 220-272 (2439)
2 PF00400 WD40: WD domain, G-be 94.3 0.038 8.3E-07 29.9 2.0 17 23-39 23-39 (39)
3 smart00320 WD40 WD40 repeats. 91.9 0.16 3.4E-06 23.8 1.9 16 24-39 25-40 (40)
4 KOG0272|consensus 83.1 0.61 1.3E-05 41.4 1.4 23 15-40 352-374 (459)
5 cd01784 rasfadin_RA Ubiquitin- 74.3 1.8 3.8E-05 30.9 1.2 21 11-31 2-23 (87)
6 KOG0283|consensus 71.4 2 4.4E-05 39.8 1.2 17 23-39 380-396 (712)
7 KOG0278|consensus 71.1 2.7 5.9E-05 36.0 1.9 28 13-43 272-299 (334)
8 KOG1408|consensus 70.3 2.9 6.2E-05 40.2 2.0 29 11-43 384-412 (1080)
9 KOG0266|consensus 68.7 3.5 7.7E-05 34.2 2.0 27 11-40 249-275 (456)
10 KOG0277|consensus 64.1 5.9 0.00013 33.8 2.5 27 21-48 71-97 (311)
11 KOG0285|consensus 61.5 4.8 0.0001 35.8 1.6 17 24-40 248-264 (460)
12 PF02870 Methyltransf_1N: 6-O- 60.3 11 0.00023 23.8 2.6 20 22-41 11-30 (77)
13 KOG0283|consensus 59.5 5.5 0.00012 37.1 1.6 17 26-42 282-298 (712)
14 KOG0645|consensus 58.0 6.9 0.00015 33.5 1.9 23 15-39 287-309 (312)
15 KOG0315|consensus 56.3 6.5 0.00014 33.6 1.4 15 26-40 98-112 (311)
16 KOG0646|consensus 53.3 9.6 0.00021 34.2 2.0 22 20-41 185-206 (476)
17 KOG0263|consensus 52.7 7.4 0.00016 36.4 1.3 17 24-40 464-480 (707)
18 KOG0309|consensus 52.0 7.8 0.00017 37.4 1.4 30 7-39 304-337 (1081)
19 KOG0291|consensus 51.0 9.8 0.00021 36.4 1.8 17 23-39 404-420 (893)
20 KOG2445|consensus 49.7 13 0.00029 32.3 2.3 25 23-47 73-97 (361)
21 KOG0974|consensus 47.5 15 0.00033 35.5 2.5 34 5-38 210-243 (967)
22 KOG0266|consensus 45.6 13 0.00028 31.0 1.6 16 24-39 301-316 (456)
23 PTZ00421 coronin; Provisional 44.9 16 0.00034 31.6 2.0 16 24-39 89-104 (493)
24 KOG0277|consensus 44.1 14 0.00031 31.6 1.7 19 21-39 158-176 (311)
25 PTZ00420 coronin; Provisional 43.8 16 0.00035 32.5 2.0 17 23-39 87-103 (568)
26 KOG0272|consensus 42.2 16 0.00036 32.7 1.8 24 15-40 394-417 (459)
27 KOG2096|consensus 41.7 18 0.00039 32.0 1.9 16 25-40 100-115 (420)
28 KOG0276|consensus 40.9 16 0.00036 34.5 1.6 18 25-42 241-258 (794)
29 KOG0284|consensus 40.2 21 0.00046 32.0 2.1 26 24-49 193-218 (464)
30 PTZ00421 coronin; Provisional 39.5 22 0.00047 30.7 2.1 16 24-39 139-154 (493)
31 KOG4283|consensus 38.8 19 0.0004 31.7 1.6 16 25-40 203-218 (397)
32 PF11319 DUF3121: Protein of u 38.1 23 0.0005 26.8 1.8 18 23-40 86-103 (183)
33 cd00200 WD40 WD40 domain, foun 37.8 22 0.00048 23.5 1.5 16 24-39 274-289 (289)
34 KOG0271|consensus 37.7 18 0.00038 32.6 1.3 20 23-42 217-236 (480)
35 KOG0284|consensus 37.1 20 0.00044 32.1 1.6 24 15-41 271-294 (464)
36 COG3981 Predicted acetyltransf 36.7 24 0.00053 27.8 1.8 14 21-34 130-143 (174)
37 KOG0649|consensus 35.6 20 0.00044 30.8 1.3 18 24-41 169-186 (325)
38 PTZ00420 coronin; Provisional 34.5 29 0.00064 30.9 2.1 16 24-39 139-154 (568)
39 KOG0313|consensus 34.4 25 0.00055 31.2 1.7 16 25-40 117-132 (423)
40 KOG0302|consensus 34.1 27 0.00058 31.2 1.8 36 5-48 260-295 (440)
41 KOG0645|consensus 33.7 36 0.00077 29.3 2.4 19 24-42 163-181 (312)
42 PF11715 Nup160: Nucleoporin N 33.7 29 0.00063 29.1 1.9 17 23-39 230-246 (547)
43 KOG1188|consensus 33.6 27 0.0006 30.6 1.8 28 22-49 83-110 (376)
44 KOG1034|consensus 32.0 30 0.00066 30.4 1.8 17 24-40 149-165 (385)
45 KOG0643|consensus 31.7 26 0.00057 30.2 1.3 17 23-39 64-80 (327)
46 PLN00181 protein SPA1-RELATED; 31.7 32 0.00069 30.4 1.9 16 24-39 589-604 (793)
47 KOG0285|consensus 31.4 32 0.00069 30.8 1.8 16 25-40 291-306 (460)
48 KOG0772|consensus 31.2 28 0.00061 32.3 1.5 16 24-39 282-297 (641)
49 PF03581 Herpes_UL33: Herpesvi 30.8 13 0.00029 25.6 -0.4 13 36-48 1-13 (75)
50 KOG0303|consensus 30.5 42 0.00091 30.2 2.4 68 24-96 95-170 (472)
51 PF14783 BBS2_Mid: Ciliary BBS 29.2 43 0.00094 24.4 2.0 18 24-41 16-33 (111)
52 PF03106 WRKY: WRKY DNA -bindi 28.8 18 0.00038 23.4 -0.1 16 5-20 2-17 (60)
53 KOG0273|consensus 28.5 35 0.00076 31.1 1.6 22 15-39 366-387 (524)
54 smart00774 WRKY DNA binding do 28.2 29 0.00062 22.8 0.8 18 5-22 2-19 (59)
55 cd06409 PB1_MUG70 The MUG70 pr 27.4 76 0.0016 22.1 2.8 26 75-100 28-62 (86)
56 KOG0296|consensus 27.4 31 0.00068 30.5 1.1 18 24-41 339-356 (399)
57 KOG1188|consensus 27.3 52 0.0011 28.9 2.4 18 23-40 328-345 (376)
58 KOG0263|consensus 27.1 38 0.00083 31.8 1.7 24 23-46 631-654 (707)
59 PHA00442 host recBCD nuclease 27.0 38 0.00083 22.9 1.2 19 68-86 25-43 (59)
60 PHA03229 DNA packaging protein 26.5 31 0.00068 26.3 0.8 15 33-47 43-57 (132)
61 PHA03236 DNA packaging protein 26.3 32 0.0007 26.0 0.9 16 31-46 35-50 (127)
62 KOG0301|consensus 26.3 43 0.00094 31.7 1.9 25 25-49 233-263 (745)
63 COG2319 FOG: WD40 repeat [Gene 26.3 54 0.0012 22.4 1.9 24 15-41 248-271 (466)
64 PF01321 Creatinase_N: Creatin 26.2 62 0.0014 20.9 2.1 21 72-92 3-23 (132)
65 KOG0313|consensus 26.0 49 0.0011 29.5 2.1 17 24-40 359-375 (423)
66 KOG1009|consensus 25.6 44 0.00096 29.8 1.7 17 23-39 135-151 (434)
67 KOG0316|consensus 25.1 43 0.00092 28.7 1.5 22 15-39 24-45 (307)
68 KOG0273|consensus 24.7 23 0.0005 32.2 -0.2 19 23-41 247-265 (524)
69 KOG0319|consensus 24.6 49 0.0011 31.5 1.9 20 21-40 374-394 (775)
70 KOG0308|consensus 24.4 1.1E+02 0.0024 29.1 4.1 61 21-100 35-95 (735)
71 KOG0306|consensus 23.3 54 0.0012 31.6 1.9 16 24-39 162-177 (888)
72 KOG4328|consensus 23.2 1E+02 0.0022 28.1 3.5 60 26-94 384-455 (498)
73 KOG0303|consensus 22.9 32 0.00069 31.0 0.4 18 22-39 143-160 (472)
74 KOG0296|consensus 21.8 68 0.0015 28.5 2.1 25 12-39 194-218 (399)
75 KOG0315|consensus 21.7 54 0.0012 28.2 1.5 26 25-50 12-44 (311)
76 KOG1517|consensus 21.4 50 0.0011 33.2 1.3 20 24-43 1124-1143(1387)
77 PF02579 Nitro_FeMo-Co: Dinitr 21.3 88 0.0019 19.6 2.1 22 72-93 64-85 (94)
78 PLN00181 protein SPA1-RELATED; 21.2 67 0.0015 28.4 2.0 17 23-39 545-561 (793)
79 KOG0271|consensus 20.9 56 0.0012 29.5 1.4 15 25-39 129-143 (480)
80 TIGR03360 VI_minor_1 type VI s 20.8 64 0.0014 25.5 1.6 15 24-38 82-96 (185)
81 PF08832 SRC-1: Steroid recept 20.1 62 0.0013 22.8 1.2 16 67-82 51-66 (78)
No 1
>KOG1064|consensus
Probab=99.65 E-value=3.3e-17 Score=157.24 Aligned_cols=53 Identities=45% Similarity=0.721 Sum_probs=48.7
Q ss_pred cCCCCccCCcccccccccccceeeeeeeeCceeeEEeeecCCCCCcccccccC
Q psy17930 3 KADGGGQGPSRSVKTLEGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFD 55 (110)
Q Consensus 3 ~~~~g~~wrktsrYMprg~V~NVLLT~C~DniCRiW~ET~lPeDsLL~~s~~~ 55 (110)
++--||+||||++|||||+|||||+|||+||+||||+||.+|+|+++++..+.
T Consensus 220 ~~Vs~~~WRktskymp~gsv~nvL~T~C~D~v~RIW~et~~p~~~l~~~~~~~ 272 (2439)
T KOG1064|consen 220 RRVSGFQWRKTSKYMPRGSVSNVLMTCCLDNVCRIWCETDLPKDCLVMLTGFD 272 (2439)
T ss_pred cccccceeccccccCCccchhhhHHhhhccCceEEEEEeccCCCeEeeecccc
Confidence 34569999999999999999999999999999999999999999999766654
No 2
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=94.30 E-value=0.038 Score=29.92 Aligned_cols=17 Identities=29% Similarity=0.646 Sum_probs=15.5
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
.+.|+|+|.|+.+|||.
T Consensus 23 ~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 23 GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSEEEEEETTSEEEEEE
T ss_pred cccceeeCCCCEEEEEC
Confidence 57889999999999994
No 3
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=91.86 E-value=0.16 Score=23.75 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=14.3
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.+++++.|+.+|+|.
T Consensus 25 ~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 25 KYLASASDDGTIKLWD 40 (40)
T ss_pred CEEEEecCCCeEEEcC
Confidence 6789999999999994
No 4
>KOG0272|consensus
Probab=83.14 E-value=0.61 Score=41.36 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=18.9
Q ss_pred ccccccccceeeeeeeeCceeeEEee
Q psy17930 15 VKTLEGSVSNMLVTSCRDNICRLWVE 40 (110)
Q Consensus 15 rYMprg~V~NVLLT~C~DniCRiW~E 40 (110)
-|+|.|.-- .||+.||+||||-=
T Consensus 352 ~fsPNGy~l---ATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 352 AFSPNGYHL---ATGSSDNTCKVWDL 374 (459)
T ss_pred eECCCceEE---eecCCCCcEEEeee
Confidence 467888754 89999999999963
No 5
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=74.29 E-value=1.8 Score=30.89 Aligned_cols=21 Identities=38% Similarity=0.347 Sum_probs=19.2
Q ss_pred Ccccccccc-cccceeeeeeee
Q psy17930 11 PSRSVKTLE-GSVSNMLVTSCR 31 (110)
Q Consensus 11 rktsrYMpr-g~V~NVLLT~C~ 31 (110)
++||-|+|. |+|.||=++|++
T Consensus 2 ~~TS~f~P~~gs~~~v~VsS~~ 23 (87)
T cd01784 2 HKTSVFTPAYGSVTNVRINSTM 23 (87)
T ss_pred CcccEeCCCCCceeEEEEecCC
Confidence 589999999 999999999875
No 6
>KOG0283|consensus
Probab=71.35 E-value=2 Score=39.84 Aligned_cols=17 Identities=41% Similarity=0.784 Sum_probs=15.4
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
-|-||++++|.++|||-
T Consensus 380 n~fLLSSSMDKTVRLWh 396 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWH 396 (712)
T ss_pred CCeeEeccccccEEeec
Confidence 37899999999999995
No 7
>KOG0278|consensus
Probab=71.11 E-value=2.7 Score=35.98 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.1
Q ss_pred ccccccccccceeeeeeeeCceeeEEeeecC
Q psy17930 13 RSVKTLEGSVSNMLVTSCRDNICRLWVETVL 43 (110)
Q Consensus 13 tsrYMprg~V~NVLLT~C~DniCRiW~ET~l 43 (110)
-=||-|.|-++ .++++|++.|||.-++-
T Consensus 272 cVrFSPdGE~y---AsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 272 CVRFSPDGELY---ASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEEECCCCcee---eccCCCceEEEEEecCC
Confidence 34789999999 89999999999987754
No 8
>KOG1408|consensus
Probab=70.33 E-value=2.9 Score=40.17 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=23.6
Q ss_pred CcccccccccccceeeeeeeeCceeeEEeeecC
Q psy17930 11 PSRSVKTLEGSVSNMLVTSCRDNICRLWVETVL 43 (110)
Q Consensus 11 rktsrYMprg~V~NVLLT~C~DniCRiW~ET~l 43 (110)
+.++--+|++| .+||+.|++.|+|-=-+-
T Consensus 384 ~~~~aclp~~c----F~TCSsD~TIRlW~l~~c 412 (1080)
T KOG1408|consen 384 SPTAACLPRGC----FTTCSSDGTIRLWDLAFC 412 (1080)
T ss_pred CcccccCCccc----eeEecCCCcEEEeecccc
Confidence 45677789998 589999999999975543
No 9
>KOG0266|consensus
Probab=68.67 E-value=3.5 Score=34.24 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=20.5
Q ss_pred CcccccccccccceeeeeeeeCceeeEEee
Q psy17930 11 PSRSVKTLEGSVSNMLVTSCRDNICRLWVE 40 (110)
Q Consensus 11 rktsrYMprg~V~NVLLT~C~DniCRiW~E 40 (110)
...--|-|.+ |.+++++.|++||||.=
T Consensus 249 v~~~~f~p~g---~~i~Sgs~D~tvriWd~ 275 (456)
T KOG0266|consen 249 VTSVAFSPDG---NLLVSGSDDGTVRIWDV 275 (456)
T ss_pred eEEEEecCCC---CEEEEecCCCcEEEEec
Confidence 3444555665 78899999999999963
No 10
>KOG0277|consensus
Probab=64.13 E-value=5.9 Score=33.83 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=21.1
Q ss_pred ccceeeeeeeeCceeeEEeeecCCCCCc
Q psy17930 21 SVSNMLVTSCRDNICRLWVETVLPDDGL 48 (110)
Q Consensus 21 ~V~NVLLT~C~DniCRiW~ET~lPeDsL 48 (110)
+-.|++++||.|+..|||. +..|+--|
T Consensus 71 ~~e~~~~~a~GDGSLrl~d-~~~~s~Pi 97 (311)
T KOG0277|consen 71 NHENQVIAASGDGSLRLFD-LTMPSKPI 97 (311)
T ss_pred CCcceEEEEecCceEEEec-cCCCCcch
Confidence 4468999999999999999 44555443
No 11
>KOG0285|consensus
Probab=61.45 E-value=4.8 Score=35.81 Aligned_cols=17 Identities=41% Similarity=0.702 Sum_probs=15.2
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
-||+|+..|.+||+|-=
T Consensus 248 dvl~t~grDst~RvWDi 264 (460)
T KOG0285|consen 248 DVLVTGGRDSTIRVWDI 264 (460)
T ss_pred eeEEecCCcceEEEeee
Confidence 58999999999999953
No 12
>PF02870 Methyltransf_1N: 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; InterPro: IPR008332 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources []. This group of proteins are characterised by having an N-terminal ribonuclease-like domain associated with 6-O-methylguanine DNA methyltransferase activity (IPR001497 from INTERPRO).; GO: 0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A.
Probab=60.29 E-value=11 Score=23.81 Aligned_cols=20 Identities=15% Similarity=0.461 Sum_probs=18.1
Q ss_pred cceeeeeeeeCceeeEEeee
Q psy17930 22 VSNMLVTSCRDNICRLWVET 41 (110)
Q Consensus 22 V~NVLLT~C~DniCRiW~ET 41 (110)
|-+++|.++++++|.||.+-
T Consensus 11 lG~l~l~a~e~gL~~i~f~~ 30 (77)
T PF02870_consen 11 LGPLLLAASEKGLCGIDFED 30 (77)
T ss_dssp TEEEEEEEETTCEEEEEEEC
T ss_pred CeEEEEEEECCeEEEEEECC
Confidence 66788999999999999986
No 13
>KOG0283|consensus
Probab=59.55 E-value=5.5 Score=37.13 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=14.7
Q ss_pred eeeeeeCceeeEEeeec
Q psy17930 26 LVTSCRDNICRLWVETV 42 (110)
Q Consensus 26 LLT~C~DniCRiW~ET~ 42 (110)
|.|+|+|++.|||+=.-
T Consensus 282 LAsaGeD~virVWkVie 298 (712)
T KOG0283|consen 282 LASAGEDGVIRVWKVIE 298 (712)
T ss_pred eeecCCCceEEEEEEec
Confidence 48999999999998663
No 14
>KOG0645|consensus
Probab=58.02 E-value=6.9 Score=33.47 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=19.6
Q ss_pred ccccccccceeeeeeeeCceeeEEe
Q psy17930 15 VKTLEGSVSNMLVTSCRDNICRLWV 39 (110)
Q Consensus 15 rYMprg~V~NVLLT~C~DniCRiW~ 39 (110)
.|-| -+.|-|+++.-|++||+|.
T Consensus 287 ~w~p--~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 287 QWNP--KVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred EEcC--CCCCceeecCCCceEEEEE
Confidence 4566 4689999999999999996
No 15
>KOG0315|consensus
Probab=56.30 E-value=6.5 Score=33.56 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=13.4
Q ss_pred eeeeeeCceeeEEee
Q psy17930 26 LVTSCRDNICRLWVE 40 (110)
Q Consensus 26 LLT~C~DniCRiW~E 40 (110)
+.|+++|++||||-=
T Consensus 98 MyTgseDgt~kIWdl 112 (311)
T KOG0315|consen 98 MYTGSEDGTVKIWDL 112 (311)
T ss_pred EEecCCCceEEEEec
Confidence 689999999999963
No 16
>KOG0646|consensus
Probab=53.26 E-value=9.6 Score=34.23 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=17.9
Q ss_pred cccceeeeeeeeCceeeEEeee
Q psy17930 20 GSVSNMLVTSCRDNICRLWVET 41 (110)
Q Consensus 20 g~V~NVLLT~C~DniCRiW~ET 41 (110)
|-+-..|+|+++|++||+|-=+
T Consensus 185 Gg~~~rl~TaS~D~t~k~wdlS 206 (476)
T KOG0646|consen 185 GGTNARLYTASEDRTIKLWDLS 206 (476)
T ss_pred CCccceEEEecCCceEEEEEec
Confidence 3356689999999999999653
No 17
>KOG0263|consensus
Probab=52.66 E-value=7.4 Score=36.35 Aligned_cols=17 Identities=29% Similarity=0.642 Sum_probs=15.0
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
+-||+|++|.+.|||.=
T Consensus 464 rfLlScSED~svRLWsl 480 (707)
T KOG0263|consen 464 RFLLSCSEDSSVRLWSL 480 (707)
T ss_pred cceeeccCCcceeeeec
Confidence 56899999999999963
No 18
>KOG0309|consensus
Probab=51.99 E-value=7.8 Score=37.44 Aligned_cols=30 Identities=27% Similarity=0.221 Sum_probs=22.5
Q ss_pred CccCCcccc----cccccccceeeeeeeeCceeeEEe
Q psy17930 7 GGQGPSRSV----KTLEGSVSNMLVTSCRDNICRLWV 39 (110)
Q Consensus 7 g~~wrktsr----YMprg~V~NVLLT~C~DniCRiW~ 39 (110)
.|.||+... |=.|. . -|+||++|...|+|-
T Consensus 304 eFlWR~r~e~~~d~d~rd-f--QLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 304 EFLWRKRKECDGDYDSRD-F--QLVTWSKDQTLRLWP 337 (1081)
T ss_pred HHhhhhcccccCCCCccc-e--eEEEeecCCceEeee
Confidence 478998765 43433 2 389999999999995
No 19
>KOG0291|consensus
Probab=50.98 E-value=9.8 Score=36.40 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=15.3
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
.||||++|.|+++|.|-
T Consensus 404 g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 404 GNVLLSSSLDGTVRAWD 420 (893)
T ss_pred CCEEEEeecCCeEEeee
Confidence 47889999999999994
No 20
>KOG2445|consensus
Probab=49.70 E-value=13 Score=32.33 Aligned_cols=25 Identities=16% Similarity=0.411 Sum_probs=19.4
Q ss_pred ceeeeeeeeCceeeEEeeecCCCCC
Q psy17930 23 SNMLVTSCRDNICRLWVETVLPDDG 47 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ET~lPeDs 47 (110)
--|+.|||.|.+.+||-|-..-+++
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~ 97 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEA 97 (361)
T ss_pred cceEEEEecCCceeeeeeccccccc
Confidence 3478999999999999997443443
No 21
>KOG0974|consensus
Probab=47.52 E-value=15 Score=35.47 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=25.2
Q ss_pred CCCccCCcccccccccccceeeeeeeeCceeeEE
Q psy17930 5 DGGGQGPSRSVKTLEGSVSNMLVTSCRDNICRLW 38 (110)
Q Consensus 5 ~~g~~wrktsrYMprg~V~NVLLT~C~DniCRiW 38 (110)
+++.-|+++.|-------+|-++|+.+|-+||+|
T Consensus 210 ~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW 243 (967)
T KOG0974|consen 210 LGCTGFGHSARVWACCFLPNRIITVGEDCTCRVW 243 (967)
T ss_pred cCcccccccceeEEEEeccceeEEeccceEEEEE
Confidence 3446677777644434456789999999999999
No 22
>KOG0266|consensus
Probab=45.62 E-value=13 Score=30.98 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=14.2
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
|.|+++|.|++||||-
T Consensus 301 ~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 301 NLLVSASYDGTIRVWD 316 (456)
T ss_pred CEEEEcCCCccEEEEE
Confidence 5679999999999995
No 23
>PTZ00421 coronin; Provisional
Probab=44.91 E-value=16 Score=31.58 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=14.8
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||-
T Consensus 89 ~~LaSgS~DgtIkIWd 104 (493)
T PTZ00421 89 QKLFTASEDGTIMGWG 104 (493)
T ss_pred CEEEEEeCCCEEEEEe
Confidence 5799999999999996
No 24
>KOG0277|consensus
Probab=44.10 E-value=14 Score=31.55 Aligned_cols=19 Identities=26% Similarity=0.644 Sum_probs=17.8
Q ss_pred ccceeeeeeeeCceeeEEe
Q psy17930 21 SVSNMLVTSCRDNICRLWV 39 (110)
Q Consensus 21 ~V~NVLLT~C~DniCRiW~ 39 (110)
.+.|++.+++.|++||||-
T Consensus 158 ~~~nlfas~Sgd~~l~lwd 176 (311)
T KOG0277|consen 158 HIPNLFASASGDGTLRLWD 176 (311)
T ss_pred CCCCeEEEccCCceEEEEE
Confidence 4789999999999999998
No 25
>PTZ00420 coronin; Provisional
Probab=43.81 E-value=16 Score=32.50 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=15.5
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
.|+|+|++.|+++|||.
T Consensus 87 ~~lLASgS~DgtIrIWD 103 (568)
T PTZ00420 87 SEILASGSEDLTIRVWE 103 (568)
T ss_pred CCEEEEEeCCCeEEEEE
Confidence 46899999999999996
No 26
>KOG0272|consensus
Probab=42.17 E-value=16 Score=32.66 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=19.2
Q ss_pred ccccccccceeeeeeeeCceeeEEee
Q psy17930 15 VKTLEGSVSNMLVTSCRDNICRLWVE 40 (110)
Q Consensus 15 rYMprg~V~NVLLT~C~DniCRiW~E 40 (110)
||-| -.-+.|+||+-||+.+||.-
T Consensus 394 k~~p--~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 394 KYSP--QEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred Eecc--cCCeEEEEcccCcceeeecC
Confidence 5666 34568999999999999964
No 27
>KOG2096|consensus
Probab=41.65 E-value=18 Score=31.98 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=14.2
Q ss_pred eeeeeeeCceeeEEee
Q psy17930 25 MLVTSCRDNICRLWVE 40 (110)
Q Consensus 25 VLLT~C~DniCRiW~E 40 (110)
-|.|+|.|++.|||.-
T Consensus 100 ~lat~~~Dr~Ir~w~~ 115 (420)
T KOG2096|consen 100 KLATISGDRSIRLWDV 115 (420)
T ss_pred eeEEEeCCceEEEEec
Confidence 3799999999999973
No 28
>KOG0276|consensus
Probab=40.89 E-value=16 Score=34.50 Aligned_cols=18 Identities=17% Similarity=0.650 Sum_probs=15.3
Q ss_pred eeeeeeeCceeeEEeeec
Q psy17930 25 MLVTSCRDNICRLWVETV 42 (110)
Q Consensus 25 VLLT~C~DniCRiW~ET~ 42 (110)
.++|+++|++.|||-.+.
T Consensus 241 iiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKT 258 (794)
T ss_pred EEEEecCCccEEEecCcc
Confidence 469999999999997643
No 29
>KOG0284|consensus
Probab=40.24 E-value=21 Score=32.03 Aligned_cols=26 Identities=12% Similarity=0.379 Sum_probs=20.7
Q ss_pred eeeeeeeeCceeeEEeeecCCCCCcc
Q psy17930 24 NMLVTSCRDNICRLWVETVLPDDGLI 49 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ET~lPeDsLL 49 (110)
++.+||+.||+.+||.-..+-|.+.|
T Consensus 193 skF~t~SdDg~ikiWdf~~~kee~vL 218 (464)
T KOG0284|consen 193 SKFLTCSDDGTIKIWDFRMPKEERVL 218 (464)
T ss_pred ceeEEecCCCeEEEEeccCCchhhee
Confidence 34699999999999987766665555
No 30
>PTZ00421 coronin; Provisional
Probab=39.46 E-value=22 Score=30.72 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=15.0
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
|+|+|++.|+++|||-
T Consensus 139 ~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 139 NVLASAGADMVVNVWD 154 (493)
T ss_pred CEEEEEeCCCEEEEEE
Confidence 7899999999999995
No 31
>KOG4283|consensus
Probab=38.84 E-value=19 Score=31.69 Aligned_cols=16 Identities=38% Similarity=0.596 Sum_probs=14.5
Q ss_pred eeeeeeeCceeeEEee
Q psy17930 25 MLVTSCRDNICRLWVE 40 (110)
Q Consensus 25 VLLT~C~DniCRiW~E 40 (110)
||.|++-|+.||||-=
T Consensus 203 vLatgsaDg~irlWDi 218 (397)
T KOG4283|consen 203 VLATGSADGAIRLWDI 218 (397)
T ss_pred EEEecCCCceEEEEEe
Confidence 6899999999999964
No 32
>PF11319 DUF3121: Protein of unknown function (DUF3121); InterPro: IPR017738 Proteins in this entry, including VC_A0118 from Vibrio cholerae O1 biovar eltor str. N16961, are restricted to a subset of bacteria with the type VI secretion system, and are encoded among the type VI-associated pathogenicity islands. However, many species with type VI secretion lack a member of this family, suggesting that members of this family may be targets rather than components of the type VI secretion system.
Probab=38.10 E-value=23 Score=26.82 Aligned_cols=18 Identities=44% Similarity=0.678 Sum_probs=15.8
Q ss_pred ceeeeeeeeCceeeEEee
Q psy17930 23 SNMLVTSCRDNICRLWVE 40 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~E 40 (110)
-+||+=+|.|||-|+..=
T Consensus 86 rpvL~isC~~niTr~~l~ 103 (183)
T PF11319_consen 86 RPVLMISCIDNITRLQLA 103 (183)
T ss_pred CceEEeEeccCceEEEEE
Confidence 389999999999999763
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=37.77 E-value=22 Score=23.48 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+++|.
T Consensus 274 ~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 274 KRLASGSADGTIRIWD 289 (289)
T ss_pred CEEEEecCCCeEEecC
Confidence 6899999999999994
No 34
>KOG0271|consensus
Probab=37.72 E-value=18 Score=32.59 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.3
Q ss_pred ceeeeeeeeCceeeEEeeec
Q psy17930 23 SNMLVTSCRDNICRLWVETV 42 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ET~ 42 (110)
|--|.++++||.||||--+.
T Consensus 217 ~r~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 217 CRRLASSSKDGSVRIWDTKL 236 (480)
T ss_pred ccceecccCCCCEEEEEccC
Confidence 34688999999999997654
No 35
>KOG0284|consensus
Probab=37.10 E-value=20 Score=32.12 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.2
Q ss_pred ccccccccceeeeeeeeCceeeEEeee
Q psy17930 15 VKTLEGSVSNMLVTSCRDNICRLWVET 41 (110)
Q Consensus 15 rYMprg~V~NVLLT~C~DniCRiW~ET 41 (110)
+|+|.+ |-|||.++|..||+---.
T Consensus 271 ~f~~n~---N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 271 KFNPNG---NWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred EEcCCC---CeeEEccCCceEEEEehh
Confidence 678887 999999999999986433
No 36
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=36.65 E-value=24 Score=27.82 Aligned_cols=14 Identities=43% Similarity=0.667 Sum_probs=11.5
Q ss_pred ccceeeeeeeeCce
Q psy17930 21 SVSNMLVTSCRDNI 34 (110)
Q Consensus 21 ~V~NVLLT~C~Dni 34 (110)
.|--|||||-.||+
T Consensus 130 gi~~Vlvtcd~dN~ 143 (174)
T COG3981 130 GIKKVLVTCDKDNI 143 (174)
T ss_pred CCCeEEEEeCCCCc
Confidence 46679999999986
No 37
>KOG0649|consensus
Probab=35.60 E-value=20 Score=30.78 Aligned_cols=18 Identities=17% Similarity=0.540 Sum_probs=14.9
Q ss_pred eeeeeeeeCceeeEEeee
Q psy17930 24 NMLVTSCRDNICRLWVET 41 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ET 41 (110)
.-+||+.||++.|||---
T Consensus 169 ~qilsG~EDGtvRvWd~k 186 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTK 186 (325)
T ss_pred cceeecCCCccEEEEecc
Confidence 346899999999999654
No 38
>PTZ00420 coronin; Provisional
Probab=34.48 E-value=29 Score=30.94 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
++|+|++.|+++|||-
T Consensus 139 ~iLaSgS~DgtIrIWD 154 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWD 154 (568)
T ss_pred eEEEEEeCCCeEEEEE
Confidence 5788999999999995
No 39
>KOG0313|consensus
Probab=34.45 E-value=25 Score=31.22 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=14.0
Q ss_pred eeeeeeeCceeeEEee
Q psy17930 25 MLVTSCRDNICRLWVE 40 (110)
Q Consensus 25 VLLT~C~DniCRiW~E 40 (110)
-+||+|-||+.|||--
T Consensus 117 ~IltgsYDg~~riWd~ 132 (423)
T KOG0313|consen 117 WILTGSYDGTSRIWDL 132 (423)
T ss_pred eEEEeecCCeeEEEec
Confidence 3699999999999964
No 40
>KOG0302|consensus
Probab=34.12 E-value=27 Score=31.21 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=25.8
Q ss_pred CCCccCCcccccccccccceeeeeeeeCceeeEEeeecCCCCCc
Q psy17930 5 DGGGQGPSRSVKTLEGSVSNMLVTSCRDNICRLWVETVLPDDGL 48 (110)
Q Consensus 5 ~~g~~wrktsrYMprg~V~NVLLT~C~DniCRiW~ET~lPeDsL 48 (110)
-.+++|--|- -||+.+|+-|+..|||-=-.-|-++-
T Consensus 260 VEDLqWSptE--------~~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 260 VEDLQWSPTE--------DGVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred hhhhccCCcc--------CceEEeeecCceEEEEEecCCCccce
Confidence 3456665443 48899999999999998766655443
No 41
>KOG0645|consensus
Probab=33.69 E-value=36 Score=29.27 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=17.1
Q ss_pred eeeeeeeeCceeeEEeeec
Q psy17930 24 NMLVTSCRDNICRLWVETV 42 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ET~ 42 (110)
-+|.+|+-||+.|+|.+-.
T Consensus 163 dlL~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDED 181 (312)
T ss_pred ceeEEeccCCeEEEEeecC
Confidence 4789999999999999974
No 42
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=33.67 E-value=29 Score=29.08 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=14.7
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
.+.|+|-|.|+..|+|.
T Consensus 230 ~~~l~tl~~D~~LRiW~ 246 (547)
T PF11715_consen 230 DTFLFTLSRDHTLRIWS 246 (547)
T ss_dssp TTEEEEEETTSEEEEEE
T ss_pred CCEEEEEeCCCeEEEEE
Confidence 35678999999999996
No 43
>KOG1188|consensus
Probab=33.56 E-value=27 Score=30.60 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=20.7
Q ss_pred cceeeeeeeeCceeeEEeeecCCCCCcc
Q psy17930 22 VSNMLVTSCRDNICRLWVETVLPDDGLI 49 (110)
Q Consensus 22 V~NVLLT~C~DniCRiW~ET~lPeDsLL 49 (110)
=++++++||-|+++|+|-=-+--+-.-+
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~ 110 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARI 110 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhhe
Confidence 4678999999999999976544343333
No 44
>KOG1034|consensus
Probab=31.99 E-value=30 Score=30.42 Aligned_cols=17 Identities=24% Similarity=0.679 Sum_probs=15.3
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
|.||++++|...|||-=
T Consensus 149 qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNI 165 (385)
T ss_pred cEEEEecCCceEEEEec
Confidence 68999999999999964
No 45
>KOG0643|consensus
Probab=31.75 E-value=26 Score=30.20 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=14.7
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
.--|+|++-||+||||-
T Consensus 64 s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWD 80 (327)
T ss_pred cceeeeccccceeEEEE
Confidence 34589999999999995
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=31.69 E-value=32 Score=30.38 Aligned_cols=16 Identities=25% Similarity=0.673 Sum_probs=14.7
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||-
T Consensus 589 ~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 589 TLLASGSDDGSVKLWS 604 (793)
T ss_pred CEEEEEcCCCEEEEEE
Confidence 5789999999999996
No 47
>KOG0285|consensus
Probab=31.41 E-value=32 Score=30.85 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=14.4
Q ss_pred eeeeeeeCceeeEEee
Q psy17930 25 MLVTSCRDNICRLWVE 40 (110)
Q Consensus 25 VLLT~C~DniCRiW~E 40 (110)
-.+||++|.++|||-+
T Consensus 291 qvit~S~D~tvrlWDl 306 (460)
T KOG0285|consen 291 QVITGSHDSTVRLWDL 306 (460)
T ss_pred ceEEecCCceEEEeee
Confidence 3689999999999988
No 48
>KOG0772|consensus
Probab=31.22 E-value=28 Score=32.31 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+-.|||+.|++.|||-
T Consensus 282 ~~FlT~s~DgtlRiWd 297 (641)
T KOG0772|consen 282 EEFLTCSYDGTLRIWD 297 (641)
T ss_pred cceEEecCCCcEEEEe
Confidence 5689999999999995
No 49
>PF03581 Herpes_UL33: Herpesvirus UL33-like protein; InterPro: IPR005208 This is a family of Herpesvirus proteins including UL33 P10217 from SWISSPROT,UL51 P16792 from SWISSPROT. The proteins in this family are involved in packaging viral DNA.; GO: 0019073 viral DNA genome packaging
Probab=30.82 E-value=13 Score=25.60 Aligned_cols=13 Identities=38% Similarity=0.777 Sum_probs=10.8
Q ss_pred eEEeeecCCCCCc
Q psy17930 36 RLWVETVLPDDGL 48 (110)
Q Consensus 36 RiW~ET~lPeDsL 48 (110)
|||+|-++|++--
T Consensus 1 ~l~Fe~mlP~~~e 13 (75)
T PF03581_consen 1 ELWFEPMLPPEIE 13 (75)
T ss_pred CccccccCchHHH
Confidence 6899999998644
No 50
>KOG0303|consensus
Probab=30.48 E-value=42 Score=30.25 Aligned_cols=68 Identities=21% Similarity=0.403 Sum_probs=40.8
Q ss_pred eeeeeeeeCceeeEEeeecCCCCCcc-cccccCCCCCCCCccccc--ccchhHHHHHHHHhccceee-----eccCceeE
Q psy17930 24 NMLVTSCRDNICRLWVETVLPDDGLI-NMSQFDPMAAQNPKFIQV--TPTLDRDMYNLLQCGMDTYL-----ATEGSLVS 95 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ET~lPeDsLL-~~s~~~~~~s~~~~f~~~--~~~K~ri~~~L~~~~~~~~~-----~~~~~~~~ 95 (110)
||+.+|++|-+|-||. .|++.+. +++ .+..-..+.-++. ..-+-...|.|.+-|.|--+ .|--.++.
T Consensus 95 ~vIASgSeD~~v~vW~---IPe~~l~~~lt--epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~ 169 (472)
T KOG0303|consen 95 CVIASGSEDTKVMVWQ---IPENGLTRDLT--EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALIT 169 (472)
T ss_pred ceeecCCCCceEEEEE---CCCcccccCcc--cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeee
Confidence 6889999999999996 5787776 433 1111111111111 11236778999999988543 34444544
Q ss_pred e
Q psy17930 96 L 96 (110)
Q Consensus 96 ~ 96 (110)
|
T Consensus 170 l 170 (472)
T KOG0303|consen 170 L 170 (472)
T ss_pred c
Confidence 3
No 51
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=29.24 E-value=43 Score=24.41 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=16.6
Q ss_pred eeeeeeeeCceeeEEeee
Q psy17930 24 NMLVTSCRDNICRLWVET 41 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ET 41 (110)
|-||.+|+|...|++++.
T Consensus 16 ~eLlvGs~D~~IRvf~~~ 33 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD 33 (111)
T ss_pred ceEEEecCCcEEEEEeCC
Confidence 789999999999999974
No 52
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=28.79 E-value=18 Score=23.41 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=9.7
Q ss_pred CCCccCCccccccccc
Q psy17930 5 DGGGQGPSRSVKTLEG 20 (110)
Q Consensus 5 ~~g~~wrktsrYMprg 20 (110)
|+|+.|||-+.-.=.|
T Consensus 2 ~Dgy~WRKYGqK~i~g 17 (60)
T PF03106_consen 2 DDGYRWRKYGQKNIKG 17 (60)
T ss_dssp -SSS-EEEEEEEEETT
T ss_pred CCCCchhhccCcccCC
Confidence 6899999977554333
No 53
>KOG0273|consensus
Probab=28.47 E-value=35 Score=31.12 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=17.8
Q ss_pred ccccccccceeeeeeeeCceeeEEe
Q psy17930 15 VKTLEGSVSNMLVTSCRDNICRLWV 39 (110)
Q Consensus 15 rYMprg~V~NVLLT~C~DniCRiW~ 39 (110)
||=|+++ +|+||+-|.+.+||.
T Consensus 366 k~n~tg~---LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 366 KWNPTGS---LLASCSDDGTLKIWS 387 (524)
T ss_pred EECCCCc---eEEEecCCCeeEeee
Confidence 4556654 579999999999998
No 54
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=28.20 E-value=29 Score=22.76 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=13.5
Q ss_pred CCCccCCccccccccccc
Q psy17930 5 DGGGQGPSRSVKTLEGSV 22 (110)
Q Consensus 5 ~~g~~wrktsrYMprg~V 22 (110)
++|+.|||-+--+-.++.
T Consensus 2 ~DGy~WRKYGQK~ikgs~ 19 (59)
T smart00774 2 DDGYQWRKYGQKVIKGSP 19 (59)
T ss_pred CCcccccccCcEecCCCc
Confidence 789999998876655543
No 55
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=27.40 E-value=76 Score=22.11 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred HHHHHHhccce---------eeeccCceeEeeeec
Q psy17930 75 MYNLLQCGMDT---------YLATEGSLVSLSTDI 100 (110)
Q Consensus 75 ~~~L~~~~~~~---------~~~~~~~~~~~~~~~ 100 (110)
....+.+|+|. |+--||..|+|.+|-
T Consensus 28 ~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~D~ 62 (86)
T cd06409 28 TLISQRLGDDDFETHLYALSYVDDEGDIVLITSDS 62 (86)
T ss_pred HHHHHHhCCccccCCcccEEEEcCCCCEEEEeccc
Confidence 34445567774 899999999999983
No 56
>KOG0296|consensus
Probab=27.39 E-value=31 Score=30.48 Aligned_cols=18 Identities=28% Similarity=0.685 Sum_probs=15.6
Q ss_pred eeeeeeeeCceeeEEeee
Q psy17930 24 NMLVTSCRDNICRLWVET 41 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ET 41 (110)
-.|+|+|-|++.|+|---
T Consensus 339 ~~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDAR 356 (399)
T ss_pred chheeeccCceEEeeecc
Confidence 478999999999999653
No 57
>KOG1188|consensus
Probab=27.26 E-value=52 Score=28.92 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=16.2
Q ss_pred ceeeeeeeeCceeeEEee
Q psy17930 23 SNMLVTSCRDNICRLWVE 40 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~E 40 (110)
-++|.|+.||+..-+|+-
T Consensus 328 ~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 328 NDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cceeeccCCCceEEEEec
Confidence 378999999999999994
No 58
>KOG0263|consensus
Probab=27.09 E-value=38 Score=31.83 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=19.1
Q ss_pred ceeeeeeeeCceeeEEeeecCCCC
Q psy17930 23 SNMLVTSCRDNICRLWVETVLPDD 46 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ET~lPeD 46 (110)
-|||+++..||.+|+|-=+.+-++
T Consensus 631 g~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 631 GNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCEEEecCCCCeEEEEEchhhccc
Confidence 478999999999999965555444
No 59
>PHA00442 host recBCD nuclease inhibitor
Probab=27.02 E-value=38 Score=22.86 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=15.2
Q ss_pred ccchhHHHHHHHHhcccee
Q psy17930 68 TPTLDRDMYNLLQCGMDTY 86 (110)
Q Consensus 68 ~~~K~ri~~~L~~~~~~~~ 86 (110)
-.+....+++|++||.|.+
T Consensus 25 Lek~~~~L~~Lea~GVDNW 43 (59)
T PHA00442 25 LEKDNEFLKALRACGVDNW 43 (59)
T ss_pred HHHhhHHHHHHHHcCCcch
Confidence 3355788999999999864
No 60
>PHA03229 DNA packaging protein UL33; Provisional
Probab=26.45 E-value=31 Score=26.32 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=12.6
Q ss_pred ceeeEEeeecCCCCC
Q psy17930 33 NICRLWVETVLPDDG 47 (110)
Q Consensus 33 niCRiW~ET~lPeDs 47 (110)
..++||+|-++|++-
T Consensus 43 ~~~~iwFE~llP~ei 57 (132)
T PHA03229 43 GDAAVWFEDLTPVEL 57 (132)
T ss_pred cceeeeecccCchHH
Confidence 578999999999853
No 61
>PHA03236 DNA packaging protein UL33; Provisional
Probab=26.33 E-value=32 Score=26.04 Aligned_cols=16 Identities=38% Similarity=0.875 Sum_probs=13.5
Q ss_pred eCceeeEEeeecCCCC
Q psy17930 31 RDNICRLWVETVLPDD 46 (110)
Q Consensus 31 ~DniCRiW~ET~lPeD 46 (110)
.+...+||+|-++|++
T Consensus 35 ~~~~~~iwFE~llP~e 50 (127)
T PHA03236 35 DDFQYRIWFEYLIPDE 50 (127)
T ss_pred CccceeeeecccCchH
Confidence 5578899999999985
No 62
>KOG0301|consensus
Probab=26.32 E-value=43 Score=31.73 Aligned_cols=25 Identities=24% Similarity=0.626 Sum_probs=18.9
Q ss_pred eeeeeeeCceeeEEee------ecCCCCCcc
Q psy17930 25 MLVTSCRDNICRLWVE------TVLPDDGLI 49 (110)
Q Consensus 25 VLLT~C~DniCRiW~E------T~lPeDsLL 49 (110)
..+||.||++.|||+- -.+|..|+-
T Consensus 233 ~Ivs~gEDrtlriW~~~e~~q~I~lPttsiW 263 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKDECVQVITLPTTSIW 263 (745)
T ss_pred eEEEecCCceEEEeecCceEEEEecCccceE
Confidence 4589999999999973 446665554
No 63
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=26.30 E-value=54 Score=22.39 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=18.5
Q ss_pred ccccccccceeeeeeeeCceeeEEeee
Q psy17930 15 VKTLEGSVSNMLVTSCRDNICRLWVET 41 (110)
Q Consensus 15 rYMprg~V~NVLLT~C~DniCRiW~ET 41 (110)
.+.|.+ +.+++++.|+.+|+|...
T Consensus 248 ~~~~~~---~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 248 SFSPDG---SLLASGSSDGTIRLWDLR 271 (466)
T ss_pred eECCCC---CEEEEecCCCcEEEeeec
Confidence 355555 677799999999999654
No 64
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=26.20 E-value=62 Score=20.87 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=17.2
Q ss_pred hHHHHHHHHhccceeeeccCc
Q psy17930 72 DRDMYNLLQCGMDTYLATEGS 92 (110)
Q Consensus 72 ~ri~~~L~~~~~~~~~~~~~~ 92 (110)
+|++++|++.|+|.++.+...
T Consensus 3 ~rl~~~m~~~gid~lll~~~~ 23 (132)
T PF01321_consen 3 ERLRAAMAEAGIDALLLTSPE 23 (132)
T ss_dssp HHHHHHHHHTT-SEEEEESHH
T ss_pred HHHHHHHHHCCCCEEEEcChh
Confidence 689999999999999887654
No 65
>KOG0313|consensus
Probab=26.03 E-value=49 Score=29.48 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.6
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
+.|++.+.||+|++|-=
T Consensus 359 ~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 359 FQLVSGSYDNTVKLWDV 375 (423)
T ss_pred eEEEEEecCCeEEEEEe
Confidence 35899999999999964
No 66
>KOG1009|consensus
Probab=25.56 E-value=44 Score=29.85 Aligned_cols=17 Identities=53% Similarity=0.817 Sum_probs=14.9
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
.|-|+++|.||.||+|-
T Consensus 135 ~~~l~s~s~dns~~l~D 151 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWD 151 (434)
T ss_pred CceeeeeeccceEEEEE
Confidence 36679999999999995
No 67
>KOG0316|consensus
Probab=25.09 E-value=43 Score=28.69 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=17.6
Q ss_pred ccccccccceeeeeeeeCceeeEEe
Q psy17930 15 VKTLEGSVSNMLVTSCRDNICRLWV 39 (110)
Q Consensus 15 rYMprg~V~NVLLT~C~DniCRiW~ 39 (110)
||=-.|+-| |||..|.+.|||.
T Consensus 24 ryN~dGnY~---ltcGsdrtvrLWN 45 (307)
T KOG0316|consen 24 RYNVDGNYC---LTCGSDRTVRLWN 45 (307)
T ss_pred EEccCCCEE---EEcCCCceEEeec
Confidence 455555556 9999999999996
No 68
>KOG0273|consensus
Probab=24.75 E-value=23 Score=32.25 Aligned_cols=19 Identities=26% Similarity=0.611 Sum_probs=16.9
Q ss_pred ceeeeeeeeCceeeEEeee
Q psy17930 23 SNMLVTSCRDNICRLWVET 41 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ET 41 (110)
-+.|+|+.+|+..|||..+
T Consensus 247 G~~LatG~~~G~~riw~~~ 265 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKD 265 (524)
T ss_pred CCeEEEeecCcEEEEEecC
Confidence 4679999999999999876
No 69
>KOG0319|consensus
Probab=24.64 E-value=49 Score=31.53 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=16.0
Q ss_pred ccce-eeeeeeeCceeeEEee
Q psy17930 21 SVSN-MLVTSCRDNICRLWVE 40 (110)
Q Consensus 21 ~V~N-VLLT~C~DniCRiW~E 40 (110)
+..+ .|+||++|+..|||.=
T Consensus 374 ~~~g~llat~sKD~svilWr~ 394 (775)
T KOG0319|consen 374 WSSGDLLATGSKDKSVILWRL 394 (775)
T ss_pred cccCcEEEEecCCceEEEEEe
Confidence 3455 6789999999999953
No 70
>KOG0308|consensus
Probab=24.38 E-value=1.1e+02 Score=29.06 Aligned_cols=61 Identities=26% Similarity=0.401 Sum_probs=35.4
Q ss_pred ccceeeeeeeeCceeeEEeeecCCCCCcccccccCCCCCCCCcccccccchhHHHHHHHHhccceeeeccCceeEeeeec
Q psy17930 21 SVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKFIQVTPTLDRDMYNLLQCGMDTYLATEGSLVSLSTDI 100 (110)
Q Consensus 21 ~V~NVLLT~C~DniCRiW~ET~lPeDsLL~~s~~~~~~s~~~~f~~~~~~K~ri~~~L~~~~~~~~~~~~~~~~~~~~~~ 100 (110)
..-+-|.|+.+|++.|+|.=+-. + ..+.-.+...+-++.-=.|-+--|||.- .|+|.|.|-
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d---~----------~~~s~~~~asme~HsDWVNDiiL~~~~~------tlIS~SsDt 95 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQD---S----------NEPSTPYIASMEHHSDWVNDIILCGNGK------TLISASSDT 95 (735)
T ss_pred CCCceEEecCCCceEEEeccccc---c----------CCcccchhhhhhhhHhHHhhHHhhcCCC------ceEEecCCc
Confidence 44457999999999999987632 1 0111113334444444445555555542 567777664
No 71
>KOG0306|consensus
Probab=23.33 E-value=54 Score=31.63 Aligned_cols=16 Identities=25% Similarity=0.754 Sum_probs=14.7
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
++|+++|+|++.++|-
T Consensus 162 ~~lvS~sKDs~iK~Wd 177 (888)
T KOG0306|consen 162 SFLVSVSKDSMIKFWD 177 (888)
T ss_pred eEEEEeccCceEEEEe
Confidence 6899999999999994
No 72
>KOG4328|consensus
Probab=23.20 E-value=1e+02 Score=28.11 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=36.0
Q ss_pred eeeeeeCceeeEEeee----cCCCCCccccc--------ccCCCCCCCCcccccccchhHHHHHHHHhccceeeeccCce
Q psy17930 26 LVTSCRDNICRLWVET----VLPDDGLINMS--------QFDPMAAQNPKFIQVTPTLDRDMYNLLQCGMDTYLATEGSL 93 (110)
Q Consensus 26 LLT~C~DniCRiW~ET----~lPeDsLL~~s--------~~~~~~s~~~~f~~~~~~K~ri~~~L~~~~~~~~~~~~~~~ 93 (110)
|||-|.||..|||-.. ..+.-..+..+ -++..-....++.-.+..+.+ +|.|=++-|.+
T Consensus 384 l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~---------IDv~~~~~~q~ 454 (498)
T KOG4328|consen 384 LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP---------IDVFDGNGGQM 454 (498)
T ss_pred eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcc---------eeEEcCCCCEE
Confidence 8999999999999984 23333333211 222333345566666666555 67776666665
Q ss_pred e
Q psy17930 94 V 94 (110)
Q Consensus 94 ~ 94 (110)
|
T Consensus 455 v 455 (498)
T KOG4328|consen 455 V 455 (498)
T ss_pred e
Confidence 4
No 73
>KOG0303|consensus
Probab=22.89 E-value=32 Score=30.98 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=16.5
Q ss_pred cceeeeeeeeCceeeEEe
Q psy17930 22 VSNMLVTSCRDNICRLWV 39 (110)
Q Consensus 22 V~NVLLT~C~DniCRiW~ 39 (110)
-.|||+|+.-||+.-||.
T Consensus 143 A~NVLlsag~Dn~v~iWn 160 (472)
T KOG0303|consen 143 APNVLLSAGSDNTVSIWN 160 (472)
T ss_pred chhhHhhccCCceEEEEe
Confidence 369999999999999995
No 74
>KOG0296|consensus
Probab=21.78 E-value=68 Score=28.46 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=20.2
Q ss_pred cccccccccccceeeeeeeeCceeeEEe
Q psy17930 12 SRSVKTLEGSVSNMLVTSCRDNICRLWV 39 (110)
Q Consensus 12 ktsrYMprg~V~NVLLT~C~DniCRiW~ 39 (110)
..+++||.|--. +|.+.|++.|+|-
T Consensus 194 t~G~f~pdGKr~---~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 194 TCGEFIPDGKRI---LTGYDDGTIIVWN 218 (399)
T ss_pred ccccccCCCceE---EEEecCceEEEEe
Confidence 357888887544 8999999999995
No 75
>KOG0315|consensus
Probab=21.65 E-value=54 Score=28.15 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=19.1
Q ss_pred eeeeeeeCceeeEEee-------ecCCCCCccc
Q psy17930 25 MLVTSCRDNICRLWVE-------TVLPDDGLIN 50 (110)
Q Consensus 25 VLLT~C~DniCRiW~E-------T~lPeDsLL~ 50 (110)
.|+|++-|.+.|||.- |+.=.|+-+|
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVN 44 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVN 44 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCcccee
Confidence 4789999999999963 5555555553
No 76
>KOG1517|consensus
Probab=21.43 E-value=50 Score=33.22 Aligned_cols=20 Identities=25% Similarity=0.597 Sum_probs=17.3
Q ss_pred eeeeeeeeCceeeEEeeecC
Q psy17930 24 NMLVTSCRDNICRLWVETVL 43 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ET~l 43 (110)
..|||++.|+++|||+.-..
T Consensus 1124 aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred hheeeeccCceEEEeccccc
Confidence 36899999999999998754
No 77
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=21.32 E-value=88 Score=19.59 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=16.3
Q ss_pred hHHHHHHHHhccceeeeccCce
Q psy17930 72 DRDMYNLLQCGMDTYLATEGSL 93 (110)
Q Consensus 72 ~ri~~~L~~~~~~~~~~~~~~~ 93 (110)
....++|++.|+..|.+.+|++
T Consensus 64 ~~~~~~L~~~gI~v~~~~~~~i 85 (94)
T PF02579_consen 64 EGAFRALKEAGIKVYQGAGGDI 85 (94)
T ss_dssp HHHHHHHHHTTSEEEESTSSBH
T ss_pred HHHHHHHHHCCCEEEEcCCCCH
Confidence 6777888888888888755543
No 78
>PLN00181 protein SPA1-RELATED; Provisional
Probab=21.23 E-value=67 Score=28.41 Aligned_cols=17 Identities=12% Similarity=0.421 Sum_probs=15.2
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
.+.|+|++.|+++|||-
T Consensus 545 ~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 545 KSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCEEEEEeCCCeEEEEE
Confidence 36799999999999995
No 79
>KOG0271|consensus
Probab=20.93 E-value=56 Score=29.52 Aligned_cols=15 Identities=47% Similarity=0.718 Sum_probs=13.8
Q ss_pred eeeeeeeCceeeEEe
Q psy17930 25 MLVTSCRDNICRLWV 39 (110)
Q Consensus 25 VLLT~C~DniCRiW~ 39 (110)
.|+|++.|.+.|||-
T Consensus 129 ~l~tGsGD~TvR~WD 143 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWD 143 (480)
T ss_pred eEEecCCCceEEeec
Confidence 679999999999995
No 80
>TIGR03360 VI_minor_1 type VI secretion-associated protein, VC_A0118 family. Members of this protein family, including VC_A0118 from Vibrio cholerae El Tor N16961, are restricted to a subset of bacteria with the type VI secretion system, and are encoded among the type VI-associated pathogenicity islands. However, many species with type VI secretion lack a member of this family. This lack suggests that members of this family may be targets rather than components of the type VI secretion system.
Probab=20.79 E-value=64 Score=25.46 Aligned_cols=15 Identities=53% Similarity=0.787 Sum_probs=13.1
Q ss_pred eeeeeeeeCceeeEE
Q psy17930 24 NMLVTSCRDNICRLW 38 (110)
Q Consensus 24 NVLLT~C~DniCRiW 38 (110)
.||+-+|.|||-||=
T Consensus 82 PvL~lsC~dnITrl~ 96 (185)
T TIGR03360 82 PVLMISCVDNITRLQ 96 (185)
T ss_pred CeEEEEeccCceEEE
Confidence 469999999999984
No 81
>PF08832 SRC-1: Steroid receptor coactivator; InterPro: IPR014935 This domain is found in steroid/nuclear receptor coactivators and contains two LXXLL motifs that are involved in receptor binding [] and includes SRC-1/NcoA-1, NcoA-2/TIF2, pCIP/ACTR/GRIP-1/AIB1. ; PDB: 4DMA_F 2O9I_D 2QXM_D 2QGT_D 2QA8_D 2QSE_C 2QA6_D 2QAB_D 2QR9_D 1WM0_Y ....
Probab=20.06 E-value=62 Score=22.78 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=12.7
Q ss_pred cccchhHHHHHHHHhc
Q psy17930 67 VTPTLDRDMYNLLQCG 82 (110)
Q Consensus 67 ~~~~K~ri~~~L~~~~ 82 (110)
.-.-|.||+|+|.|-|
T Consensus 51 SL~EKHKILHrLLQng 66 (78)
T PF08832_consen 51 SLQEKHKILHRLLQNG 66 (78)
T ss_dssp -CCCCTHHHHHHHHCS
T ss_pred cHHHHHHHHHHHHhcC
Confidence 4446799999999987
Done!