Query psy17930
Match_columns 110
No_of_seqs 49 out of 51
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 17:48:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aow_A Guanine nucleotide-bind 86.4 0.31 1E-05 33.3 1.8 16 24-39 52-67 (340)
2 4ggc_A P55CDC, cell division c 84.9 0.41 1.4E-05 32.3 1.8 16 24-39 297-312 (318)
3 4gq1_A NUP37; propeller, trans 81.2 0.79 2.7E-05 33.8 2.2 16 24-39 157-172 (393)
4 4h5i_A Guanine nucleotide-exch 77.0 1.2 4.1E-05 32.7 2.1 16 24-39 325-340 (365)
5 4aow_A Guanine nucleotide-bind 77.0 1.2 4E-05 30.4 1.9 16 24-39 319-334 (340)
6 4gga_A P55CDC, cell division c 76.4 1.1 3.9E-05 32.8 1.8 16 24-39 377-392 (420)
7 2pm7_B Protein transport prote 74.4 1.9 6.3E-05 30.2 2.4 18 23-40 219-236 (297)
8 2pm7_B Protein transport prote 73.0 1.8 6E-05 30.3 2.0 17 24-40 68-84 (297)
9 1k8k_C P40, ARP2/3 complex 41 72.4 1.9 6.5E-05 29.7 2.0 16 24-39 343-358 (372)
10 1erj_A Transcriptional repress 70.7 2.5 8.5E-05 30.9 2.4 17 23-39 370-386 (393)
11 3dwl_C Actin-related protein 2 70.0 2.5 8.6E-05 29.6 2.2 15 25-39 362-376 (377)
12 4e54_B DNA damage-binding prot 69.7 1.9 6.5E-05 31.9 1.7 16 24-39 178-193 (435)
13 3frx_A Guanine nucleotide-bind 69.4 2.2 7.6E-05 30.2 1.9 16 24-39 31-46 (319)
14 2xzm_R RACK1; ribosome, transl 69.4 2.3 7.7E-05 30.3 1.9 17 24-40 40-56 (343)
15 3f3f_A Nucleoporin SEH1; struc 68.2 2.8 9.7E-05 27.8 2.1 18 24-41 231-248 (351)
16 4ggc_A P55CDC, cell division c 67.8 2.8 9.5E-05 28.2 2.0 16 24-39 80-95 (318)
17 3bg1_A Protein SEC13 homolog; 67.6 3.1 0.00011 29.4 2.4 18 24-41 275-292 (316)
18 3lrv_A PRE-mRNA-splicing facto 67.5 3.3 0.00011 29.4 2.5 16 24-39 49-64 (343)
19 3bg1_A Protein SEC13 homolog; 66.8 2.5 8.5E-05 29.9 1.7 16 24-39 72-87 (316)
20 3f3f_A Nucleoporin SEH1; struc 66.2 2.8 9.6E-05 27.8 1.8 18 24-41 319-336 (351)
21 4gq1_A NUP37; propeller, trans 65.5 3.1 0.00011 30.6 2.1 16 24-39 102-117 (393)
22 2ynn_A Coatomer subunit beta'; 65.3 3 0.0001 29.2 1.9 16 24-39 241-256 (304)
23 3fm0_A Protein CIAO1; WDR39,SG 64.4 3.3 0.00011 29.7 2.0 18 24-41 317-334 (345)
24 2hes_X YDR267CP; beta-propelle 64.3 3.2 0.00011 29.5 1.9 16 24-39 310-325 (330)
25 2hes_X YDR267CP; beta-propelle 62.4 3.6 0.00012 29.3 1.9 16 24-39 166-181 (330)
26 3ow8_A WD repeat-containing pr 61.4 4 0.00014 29.3 1.9 16 24-39 49-64 (321)
27 2ynn_A Coatomer subunit beta'; 61.3 3.9 0.00014 28.6 1.9 16 24-39 110-125 (304)
28 3frx_A Guanine nucleotide-bind 60.4 4.4 0.00015 28.7 2.0 16 24-39 78-93 (319)
29 3iz6_a 40S ribosomal protein R 59.8 4.2 0.00014 29.6 1.8 16 24-39 79-94 (380)
30 1lup_A GSMTX2; inhibitor cyste 59.6 1.5 5.2E-05 25.4 -0.4 15 27-41 13-27 (31)
31 4gqb_B Methylosome protein 50; 59.5 4.1 0.00014 30.0 1.8 16 24-39 183-198 (344)
32 3k26_A Polycomb protein EED; W 59.2 4.9 0.00017 27.3 2.0 16 24-39 348-363 (366)
33 3fm0_A Protein CIAO1; WDR39,SG 59.2 4.1 0.00014 29.2 1.7 16 24-39 29-44 (345)
34 2pbi_B Guanine nucleotide-bind 59.0 4.5 0.00015 29.3 1.9 16 24-39 253-268 (354)
35 4g56_B MGC81050 protein; prote 58.5 4.4 0.00015 29.5 1.8 16 24-39 283-298 (357)
36 3dm0_A Maltose-binding peripla 58.4 4.7 0.00016 31.9 2.0 16 24-39 396-411 (694)
37 4gqb_B Methylosome protein 50; 58.1 4.4 0.00015 29.8 1.8 16 24-39 271-286 (344)
38 3iz6_a 40S ribosomal protein R 57.9 4.9 0.00017 29.2 1.9 16 24-39 219-234 (380)
39 4e54_B DNA damage-binding prot 57.1 4.4 0.00015 29.9 1.6 16 24-39 133-148 (435)
40 3gre_A Serine/threonine-protei 56.9 5.6 0.00019 28.7 2.1 17 24-40 77-93 (437)
41 3mmy_A MRNA export factor; mRN 56.9 6.3 0.00022 26.7 2.2 17 24-40 55-71 (368)
42 2xzm_R RACK1; ribosome, transl 56.7 5.3 0.00018 28.4 1.9 16 24-39 89-104 (343)
43 3jrp_A Fusion protein of prote 56.4 7 0.00024 26.7 2.4 18 23-40 221-238 (379)
44 4g56_B MGC81050 protein; prote 55.9 5.1 0.00018 29.1 1.8 16 24-39 325-340 (357)
45 1vyh_C Platelet-activating fac 55.5 5.4 0.00018 29.5 1.8 16 24-39 393-408 (410)
46 3dw8_B Serine/threonine-protei 54.5 6.4 0.00022 28.0 2.1 17 24-40 108-124 (447)
47 2pbi_B Guanine nucleotide-bind 54.3 6.3 0.00022 28.5 2.0 16 24-39 77-92 (354)
48 3zwl_B Eukaryotic translation 53.9 6.9 0.00023 26.5 2.0 17 24-40 328-344 (369)
49 1got_B GT-beta; complex (GTP-b 53.5 6.7 0.00023 27.9 2.0 16 24-39 68-83 (340)
50 2w18_A PALB2, fancn, partner a 52.6 5.7 0.00019 32.2 1.7 16 24-39 339-354 (356)
51 1got_B GT-beta; complex (GTP-b 52.4 6.8 0.00023 27.9 1.9 16 24-39 239-254 (340)
52 3jrp_A Fusion protein of prote 51.6 7.3 0.00025 26.6 1.9 17 23-39 69-85 (379)
53 3odt_A Protein DOA1; ubiquitin 51.2 7.7 0.00026 25.8 1.9 16 24-39 30-45 (313)
54 2j04_B YDR362CP, TAU91; beta p 50.3 7.6 0.00026 31.2 2.1 16 24-39 324-339 (524)
55 1sq9_A Antiviral protein SKI8; 50.2 8.3 0.00029 26.9 2.0 18 24-41 27-44 (397)
56 3mmy_A MRNA export factor; mRN 50.1 9.5 0.00032 25.8 2.2 16 24-39 142-157 (368)
57 3k26_A Polycomb protein EED; W 49.9 7.7 0.00026 26.4 1.8 16 24-39 129-144 (366)
58 4a11_B DNA excision repair pro 49.9 7.6 0.00026 26.8 1.8 18 24-41 347-364 (408)
59 2aq5_A Coronin-1A; WD40 repeat 49.7 7.9 0.00027 27.8 1.9 16 24-39 95-110 (402)
60 3gre_A Serine/threonine-protei 49.4 8.8 0.0003 27.6 2.1 16 24-39 422-437 (437)
61 4h5i_A Guanine nucleotide-exch 48.9 8.3 0.00028 28.2 1.9 16 24-39 282-297 (365)
62 4a11_B DNA excision repair pro 48.7 8.9 0.0003 26.5 1.9 16 24-39 57-72 (408)
63 1vyh_C Platelet-activating fac 48.5 9 0.00031 28.3 2.1 17 23-39 308-324 (410)
64 2aq5_A Coronin-1A; WD40 repeat 48.4 8 0.00027 27.8 1.8 16 24-39 145-160 (402)
65 4ery_A WD repeat-containing pr 48.3 9.4 0.00032 26.2 2.0 16 24-39 78-93 (312)
66 4ery_A WD repeat-containing pr 47.2 9.4 0.00032 26.2 1.9 16 24-39 120-135 (312)
67 1sq9_A Antiviral protein SKI8; 46.6 11 0.00039 26.2 2.3 17 24-40 377-393 (397)
68 3vl1_A 26S proteasome regulato 46.3 8.7 0.0003 27.2 1.6 18 24-41 347-364 (420)
69 3ow8_A WD repeat-containing pr 46.2 10 0.00035 27.1 2.0 16 24-39 93-108 (321)
70 3vu4_A KMHSV2; beta-propeller 45.9 9.5 0.00033 27.6 1.8 16 24-39 208-224 (355)
71 1erj_A Transcriptional repress 45.6 10 0.00036 27.6 2.0 16 24-39 178-193 (393)
72 2w18_A PALB2, fancn, partner a 45.4 11 0.00037 30.6 2.3 15 25-39 195-209 (356)
73 3i2n_A WD repeat-containing pr 45.1 13 0.00043 25.3 2.2 17 25-41 274-290 (357)
74 3dm0_A Maltose-binding peripla 45.0 10 0.00035 30.0 2.0 16 24-39 675-690 (694)
75 3vu4_A KMHSV2; beta-propeller 44.9 11 0.00038 27.2 2.1 16 24-39 253-268 (355)
76 3dw8_B Serine/threonine-protei 44.8 11 0.00038 26.8 2.0 17 24-40 41-57 (447)
77 3lrv_A PRE-mRNA-splicing facto 44.3 11 0.00038 26.6 1.9 16 24-39 140-155 (343)
78 3i2n_A WD repeat-containing pr 44.0 12 0.0004 25.4 1.9 16 24-39 130-145 (357)
79 3v7d_B Cell division control p 43.9 10 0.00035 27.5 1.8 16 24-39 133-148 (464)
80 3ei3_B DNA damage-binding prot 43.6 13 0.00045 26.2 2.2 16 24-39 132-147 (383)
81 3ddc_B RAS association domain- 43.3 6.1 0.00021 29.7 0.5 26 6-31 72-97 (163)
82 2ymu_A WD-40 repeat protein; u 43.2 10 0.00035 28.2 1.7 15 24-38 562-576 (577)
83 3zwl_B Eukaryotic translation 43.1 13 0.00043 25.2 2.0 16 24-39 87-102 (369)
84 4gga_A P55CDC, cell division c 42.1 12 0.00041 27.3 1.9 16 24-39 160-175 (420)
85 3ei3_B DNA damage-binding prot 42.1 13 0.00044 26.2 2.0 17 24-40 87-103 (383)
86 2j04_B YDR362CP, TAU91; beta p 41.7 12 0.0004 30.0 1.9 16 24-39 226-241 (524)
87 2pm9_A Protein WEB1, protein t 41.6 13 0.00045 26.0 2.0 16 24-39 276-291 (416)
88 3v7d_B Cell division control p 41.6 14 0.00048 26.8 2.2 15 25-39 175-189 (464)
89 3dwl_C Actin-related protein 2 41.3 14 0.00047 25.8 2.0 17 24-40 159-175 (377)
90 1yfq_A Cell cycle arrest prote 41.0 14 0.00046 25.2 1.9 17 23-39 112-128 (342)
91 3vl1_A 26S proteasome regulato 40.7 14 0.00049 26.1 2.0 16 24-39 152-167 (420)
92 2ymu_A WD-40 repeat protein; u 40.6 13 0.00044 27.7 1.9 17 24-40 70-86 (577)
93 2pm9_A Protein WEB1, protein t 40.4 12 0.00042 26.2 1.6 16 24-39 319-334 (416)
94 2oaj_A Protein SNI1; WD40 repe 39.6 18 0.00063 30.7 2.9 17 23-39 447-463 (902)
95 1gxr_A ESG1, transducin-like e 39.4 15 0.00052 24.5 1.9 16 24-39 319-334 (337)
96 1r5m_A SIR4-interacting protei 39.3 14 0.00049 25.5 1.8 16 25-40 60-75 (425)
97 1k8k_C P40, ARP2/3 complex 41 39.3 16 0.00054 25.1 2.0 17 24-40 215-231 (372)
98 1pgu_A Actin interacting prote 38.9 14 0.00049 27.3 1.9 14 26-39 598-611 (615)
99 1nr0_A Actin interacting prote 37.3 15 0.00052 28.8 1.9 16 24-39 549-564 (611)
100 1nr0_A Actin interacting prote 36.5 17 0.00058 28.5 2.0 16 24-39 252-267 (611)
101 2vdu_B TRNA (guanine-N(7)-)-me 36.3 18 0.00063 26.6 2.1 16 24-39 211-226 (450)
102 4aez_A CDC20, WD repeat-contai 36.2 17 0.00058 26.2 1.9 16 24-39 230-245 (401)
103 2ovr_B FBW7, F-BOX/WD repeat p 35.2 17 0.00058 26.5 1.8 16 24-39 170-185 (445)
104 1p22_A F-BOX/WD-repeat protein 35.1 18 0.00062 26.4 1.9 16 24-39 184-199 (435)
105 2oit_A Nucleoporin 214KDA; NH2 34.9 17 0.00057 27.8 1.8 17 23-39 162-178 (434)
106 2vdu_B TRNA (guanine-N(7)-)-me 34.4 20 0.00068 26.4 2.0 16 24-39 253-268 (450)
107 2ovr_B FBW7, F-BOX/WD repeat p 33.4 21 0.00073 26.0 2.0 16 24-39 373-388 (445)
108 1p22_A F-BOX/WD-repeat protein 32.7 18 0.00063 26.4 1.6 16 24-39 396-411 (435)
109 1wj2_A Probable WRKY transcrip 30.6 21 0.00072 23.7 1.5 20 3-22 16-35 (78)
110 4aez_A CDC20, WD repeat-contai 30.2 26 0.00089 25.3 2.0 16 24-39 362-377 (401)
111 2ayd_A WRKY transcription fact 30.2 13 0.00044 24.6 0.4 20 3-22 13-32 (76)
112 1pgu_A Actin interacting prote 29.2 27 0.00091 25.8 1.9 18 23-40 553-570 (615)
113 2xyi_A Probable histone-bindin 28.1 28 0.00095 25.6 1.9 17 24-40 291-307 (430)
114 3pn9_A Proline dipeptidase; st 28.1 17 0.00057 23.3 0.6 23 70-92 6-28 (138)
115 2xyi_A Probable histone-bindin 27.9 33 0.0011 25.2 2.3 15 25-39 393-407 (430)
116 3i7m_A XAA-Pro dipeptidase; st 24.4 45 0.0015 21.5 2.2 24 68-91 3-26 (140)
117 3tl8_B Effector protein hopab2 23.4 35 0.0012 24.7 1.6 24 72-95 73-96 (117)
118 2lf6_A Effector protein hopab1 22.8 28 0.00097 24.6 1.0 23 72-94 56-78 (101)
119 3jro_A Fusion protein of prote 21.7 41 0.0014 27.4 1.9 17 23-39 67-83 (753)
120 2oit_A Nucleoporin 214KDA; NH2 21.4 40 0.0014 25.7 1.7 16 24-39 205-220 (434)
121 3bej_E Nuclear receptor coacti 20.5 46 0.0016 18.5 1.4 14 69-82 9-22 (26)
No 1
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=86.35 E-value=0.31 Score=33.28 Aligned_cols=16 Identities=25% Similarity=0.733 Sum_probs=14.7
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 52 ~~l~S~s~D~~i~vWd 67 (340)
T 4aow_A 52 DMILSASRDKTIIMWK 67 (340)
T ss_dssp TEEEEEETTSCEEEEE
T ss_pred CEEEEEcCCCeEEEEE
Confidence 5789999999999996
No 2
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=84.92 E-value=0.41 Score=32.31 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 297 ~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 297 ATVASAAADETLRLWR 312 (318)
T ss_dssp SCEEEEETTTEEEEEC
T ss_pred CEEEEEecCCeEEEEE
Confidence 4689999999999995
No 3
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=81.20 E-value=0.79 Score=33.81 Aligned_cols=16 Identities=13% Similarity=0.351 Sum_probs=14.9
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
++|+|++.|+++|||-
T Consensus 157 ~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 157 QVIASVGDDCTLIIWR 172 (393)
T ss_dssp EEEEEEETTSEEEEEE
T ss_pred CEEEEEECCCeEEEEE
Confidence 5899999999999996
No 4
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=76.98 E-value=1.2 Score=32.71 Aligned_cols=16 Identities=6% Similarity=0.084 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 325 ~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 325 TYVASVSAANTIHIIK 340 (365)
T ss_dssp CEEEEEETTSEEEEEE
T ss_pred CEEEEEeCCCeEEEEE
Confidence 4689999999999996
No 5
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=76.98 E-value=1.2 Score=30.36 Aligned_cols=16 Identities=31% Similarity=0.729 Sum_probs=14.6
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+.+|||.
T Consensus 319 ~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 319 QTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp SEEEEEETTSCEEEEE
T ss_pred CEEEEEeCCCEEEEEe
Confidence 4789999999999996
No 6
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=76.44 E-value=1.1 Score=32.82 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 377 ~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 377 ATVASAAADETLRLWR 392 (420)
T ss_dssp SCEEEEETTTEEEEEC
T ss_pred CEEEEEecCCeEEEEE
Confidence 4689999999999996
No 7
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=74.38 E-value=1.9 Score=30.21 Aligned_cols=18 Identities=17% Similarity=0.698 Sum_probs=15.7
Q ss_pred ceeeeeeeeCceeeEEee
Q psy17930 23 SNMLVTSCRDNICRLWVE 40 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~E 40 (110)
-+.|+|++.|+++|||.-
T Consensus 219 ~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 219 RSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp SEEEEEEETTSCEEEEEE
T ss_pred ceEEEEEECCCcEEEEEe
Confidence 368999999999999963
No 8
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=72.95 E-value=1.8 Score=30.32 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=15.3
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
+.|+|++.|+++|||.-
T Consensus 68 ~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 68 TILASCSYDGKVMIWKE 84 (297)
T ss_dssp SEEEEEETTTEEEEEEB
T ss_pred CEEEEEcCCCEEEEEEc
Confidence 57999999999999964
No 9
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=72.38 E-value=1.9 Score=29.70 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=15.2
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+.+|||.
T Consensus 343 ~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 343 SQFCTTGMDGGMSIWD 358 (372)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred eeEEEecCCCceEEEE
Confidence 7899999999999996
No 10
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=70.67 E-value=2.5 Score=30.91 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=15.3
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
.+.|+|++.|+++|||.
T Consensus 370 ~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 370 YNVFATGSGDCKARIWK 386 (393)
T ss_dssp CEEEEEEETTSEEEEEE
T ss_pred CCEEEEECCCCcEEECc
Confidence 36899999999999996
No 11
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=69.95 E-value=2.5 Score=29.61 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=13.8
Q ss_pred eeeeeeeCceeeEEe
Q psy17930 25 MLVTSCRDNICRLWV 39 (110)
Q Consensus 25 VLLT~C~DniCRiW~ 39 (110)
.|+|++.|+.+|||.
T Consensus 362 ~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 362 AFTSSGTDGRVVLWT 376 (377)
T ss_dssp EEEEEETTSEEEEEC
T ss_pred EEEeecCCCcEEEec
Confidence 599999999999994
No 12
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=69.74 E-value=1.9 Score=31.88 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||-
T Consensus 178 ~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 178 NQFYASSMEGTTRLQD 193 (435)
T ss_dssp TEEEEECSSSCEEEEE
T ss_pred CEEEEEeCCCEEEEee
Confidence 5799999999999994
No 13
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=69.42 E-value=2.2 Score=30.24 Aligned_cols=16 Identities=31% Similarity=0.650 Sum_probs=14.8
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|+|.
T Consensus 31 ~~l~s~s~D~~v~~W~ 46 (319)
T 3frx_A 31 NLLLSASRDKTLISWK 46 (319)
T ss_dssp TEEEEEETTSEEEEEE
T ss_pred cEEEEecCCccEEEec
Confidence 6789999999999995
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=69.41 E-value=2.3 Score=30.31 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=15.1
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
+.|+|++.|+++|||.-
T Consensus 40 ~~l~sgs~D~~v~iWd~ 56 (343)
T 2xzm_R 40 PVLISGSRDKTVMIWKL 56 (343)
T ss_dssp CEEEEEETTSCEEEEEE
T ss_pred CEEEEEcCCCEEEEEEC
Confidence 47899999999999963
No 15
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=68.20 E-value=2.8 Score=27.77 Aligned_cols=18 Identities=28% Similarity=0.636 Sum_probs=16.1
Q ss_pred eeeeeeeeCceeeEEeee
Q psy17930 24 NMLVTSCRDNICRLWVET 41 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ET 41 (110)
+.|+|++.|+.+|||.-.
T Consensus 231 ~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp EEEEEEETTSCEEEEEEE
T ss_pred eEEEEEcCCCeEEEEeCC
Confidence 689999999999999754
No 16
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=67.75 E-value=2.8 Score=28.17 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 80 ~~l~sgs~Dg~v~iw~ 95 (318)
T 4ggc_A 80 NYLAVGTSSAEVQLWD 95 (318)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred CEEEEEECCCcEEEee
Confidence 5689999999999995
No 17
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=67.65 E-value=3.1 Score=29.43 Aligned_cols=18 Identities=44% Similarity=0.693 Sum_probs=16.2
Q ss_pred eeeeeeeeCceeeEEeee
Q psy17930 24 NMLVTSCRDNICRLWVET 41 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ET 41 (110)
+.|++++.|+++|||...
T Consensus 275 ~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 275 NILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCEEEEESSSCEEEEEEC
T ss_pred CEEEEEcCCCeEEEEEEC
Confidence 578999999999999875
No 18
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=67.52 E-value=3.3 Score=29.35 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=14.7
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
++|+|++.|+++|||-
T Consensus 49 ~~l~sg~~Dg~v~iwd 64 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQ 64 (343)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCcEEEEE
Confidence 6789999999999996
No 19
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=66.80 E-value=2.5 Score=29.93 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.8
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 72 ~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 72 NILASCSYDRKVIIWR 87 (316)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCEEEEEE
Confidence 6799999999999995
No 20
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=66.22 E-value=2.8 Score=27.80 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=15.8
Q ss_pred eeeeeeeeCceeeEEeee
Q psy17930 24 NMLVTSCRDNICRLWVET 41 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ET 41 (110)
+.|+|++.|+.+|||.=.
T Consensus 319 ~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 319 TILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp CCEEEEETTSCEEEEEEC
T ss_pred CEEEEecCCCcEEEEecC
Confidence 478999999999999755
No 21
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=65.53 E-value=3.1 Score=30.57 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=14.6
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
++|++++.|+++|||.
T Consensus 102 ~~las~~~d~~v~lw~ 117 (393)
T 4gq1_A 102 LFLACVCQDNTVRLII 117 (393)
T ss_dssp EEEEEEETTSCEEEEE
T ss_pred CEEEEEeCCCcEEEEE
Confidence 5789999999999995
No 22
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=65.27 E-value=3 Score=29.21 Aligned_cols=16 Identities=13% Similarity=0.634 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 241 ~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 241 PIIISGSEDGTLKIWN 256 (304)
T ss_dssp SEEEEEETTSCEEEEE
T ss_pred CEEEEEcCCCeEEEEE
Confidence 4689999999999996
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=64.41 E-value=3.3 Score=29.70 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=15.7
Q ss_pred eeeeeeeeCceeeEEeee
Q psy17930 24 NMLVTSCRDNICRLWVET 41 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ET 41 (110)
+.|+|++.|+.+|||.-.
T Consensus 317 ~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 317 GLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp TEEEEEETTSCEEEEEEC
T ss_pred eEEEEcCCCCcEEEEEec
Confidence 478999999999999854
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=64.29 E-value=3.2 Score=29.54 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 310 ~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 310 TILATGGDDGIVNFWS 325 (330)
T ss_dssp CCEEEEETTSEEEEEE
T ss_pred eEEEEecCCCcEEEEE
Confidence 4689999999999995
No 25
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=62.44 E-value=3.6 Score=29.27 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=14.6
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 166 ~~l~s~s~D~~i~iW~ 181 (330)
T 2hes_X 166 ALLASSSYDDTVRIWK 181 (330)
T ss_dssp SEEEEEETTSCEEEEE
T ss_pred CEEEEEcCCCeEEEEE
Confidence 5789999999999995
No 26
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=61.39 E-value=4 Score=29.25 Aligned_cols=16 Identities=25% Similarity=0.688 Sum_probs=14.7
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 49 ~~l~tgs~D~~v~vW~ 64 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWK 64 (321)
T ss_dssp CEEEEEETTSCEEEEE
T ss_pred CEEEEEcCCCCEEEEE
Confidence 4799999999999996
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=61.33 E-value=3.9 Score=28.61 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||-
T Consensus 110 ~~l~sgs~D~~v~lWd 125 (304)
T 2ynn_A 110 PYVLSGSDDLTVKLWN 125 (304)
T ss_dssp SEEEEEETTSCEEEEE
T ss_pred CEEEEECCCCeEEEEE
Confidence 4689999999999996
No 28
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=60.37 E-value=4.4 Score=28.66 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||-
T Consensus 78 ~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 78 AYALSASWDKTLRLWD 93 (319)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred CEEEEEeCCCEEEEEE
Confidence 4689999999999996
No 29
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=59.81 E-value=4.2 Score=29.57 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||-
T Consensus 79 ~~l~s~s~D~~v~iWd 94 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWN 94 (380)
T ss_dssp SCEEEEETTSEEEEEE
T ss_pred CEEEEEeCCCeEEEEE
Confidence 4689999999999996
No 30
>1lup_A GSMTX2; inhibitor cysteine knot, beta-sheet, toxin; NMR {Grammostola rosea} SCOP: g.3.6.2 PDB: 1v7f_A
Probab=59.57 E-value=1.5 Score=25.43 Aligned_cols=15 Identities=33% Similarity=1.015 Sum_probs=12.5
Q ss_pred eeeeeCceeeEEeee
Q psy17930 27 VTSCRDNICRLWVET 41 (110)
Q Consensus 27 LT~C~DniCRiW~ET 41 (110)
-.||+..+||+|+--
T Consensus 13 ~kCCeg~vC~lWCKy 27 (31)
T 1lup_A 13 RKCCEGLVCRLWCKR 27 (31)
T ss_dssp CCCCSSSBCSSBCBC
T ss_pred hhhcccchHHHHHHH
Confidence 468999999999854
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=59.54 E-value=4.1 Score=29.99 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=14.3
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
++|+|++.|+++|||-
T Consensus 183 ~~l~s~s~D~~v~iwd 198 (344)
T 4gqb_B 183 SVFLSCSEDNRILLWD 198 (344)
T ss_dssp TEEEEEETTSCEEEEE
T ss_pred Cceeeecccccccccc
Confidence 4789999999999994
No 32
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=59.24 E-value=4.9 Score=27.32 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+|||.
T Consensus 348 ~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 348 SILIAVCDDASIWRWD 363 (366)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred CeEEEEeCCCEEEEEE
Confidence 5789999999999995
No 33
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=59.24 E-value=4.1 Score=29.18 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=14.2
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 29 ~~las~~~D~~i~iw~ 44 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWG 44 (345)
T ss_dssp SCEEEEETTSCEEEEE
T ss_pred CEEEEEcCCCeEEEEE
Confidence 4679999999999994
No 34
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=59.05 E-value=4.5 Score=29.30 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=14.6
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||-
T Consensus 253 ~~l~s~s~D~~v~lwd 268 (354)
T 2pbi_B 253 DAFASGSDDATCRLYD 268 (354)
T ss_dssp SEEEEEETTSCEEEEE
T ss_pred CEEEEEeCCCeEEEEE
Confidence 5789999999999995
No 35
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=58.46 E-value=4.4 Score=29.49 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=14.2
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
++|+|++.|+++|||-
T Consensus 283 ~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 283 PFLASISEDCTVAVLD 298 (357)
T ss_dssp CCEEEEETTSCEEEEC
T ss_pred CEEEEEeCCCEEEEEE
Confidence 4688999999999994
No 36
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=58.41 E-value=4.7 Score=31.91 Aligned_cols=16 Identities=31% Similarity=0.729 Sum_probs=14.7
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
++|+|++.|+++|||.
T Consensus 396 ~~l~s~s~D~~i~~W~ 411 (694)
T 3dm0_A 396 DIIVSASRDKSIILWK 411 (694)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred CEEEEEeCCCcEEEEE
Confidence 5799999999999995
No 37
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=58.09 E-value=4.4 Score=29.78 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=14.1
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||-
T Consensus 271 ~~lasgs~D~~i~vwd 286 (344)
T 4gqb_B 271 PFLASLSEDCSLAVLD 286 (344)
T ss_dssp CCEEEEETTSCEEEEC
T ss_pred eEEEEEeCCCeEEEEE
Confidence 4688999999999994
No 38
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=57.91 E-value=4.9 Score=29.19 Aligned_cols=16 Identities=38% Similarity=0.783 Sum_probs=14.9
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
|.|+|++.|+.+|||-
T Consensus 219 ~~l~sgs~D~~v~~wd 234 (380)
T 3iz6_a 219 NMFISGSCDTTVRLWD 234 (380)
T ss_dssp CEEEEEETTSCEEEEE
T ss_pred CEEEEEECCCeEEEEE
Confidence 6899999999999996
No 39
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=57.08 E-value=4.4 Score=29.94 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=14.6
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
|+|+|++.|+.++||-
T Consensus 133 ~~lasGs~dg~i~lWd 148 (435)
T 4e54_B 133 STVAVGSKGGDIMLWN 148 (435)
T ss_dssp TCEEEEETTSCEEEEC
T ss_pred CEEEEEeCCCEEEEEE
Confidence 5789999999999994
No 40
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=56.94 E-value=5.6 Score=28.67 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=15.0
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
+.|+|++.|+++|||.-
T Consensus 77 ~~l~s~s~dg~v~vwd~ 93 (437)
T 3gre_A 77 PYLITGSDQGVIKIWNL 93 (437)
T ss_dssp CEEEEEETTSEEEEEEH
T ss_pred CEEEEecCCceEEEeEC
Confidence 47899999999999963
No 41
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=56.86 E-value=6.3 Score=26.69 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=15.3
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
+.|++++.|+.+|||.-
T Consensus 55 ~~l~~~~~dg~i~iw~~ 71 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEV 71 (368)
T ss_dssp EEEEEEETTSEEEEEEE
T ss_pred eEEEEECCCCcEEEEEc
Confidence 67899999999999974
No 42
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=56.73 E-value=5.3 Score=28.39 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=14.1
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||-
T Consensus 89 ~~l~s~s~D~~v~lwd 104 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWD 104 (343)
T ss_dssp TEEEEEETTSEEEEEE
T ss_pred CEEEEEcCCCcEEEEE
Confidence 3579999999999995
No 43
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=56.40 E-value=7 Score=26.71 Aligned_cols=18 Identities=22% Similarity=0.720 Sum_probs=15.8
Q ss_pred ceeeeeeeeCceeeEEee
Q psy17930 23 SNMLVTSCRDNICRLWVE 40 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~E 40 (110)
.+.|++++.|+.+|||.-
T Consensus 221 ~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 221 RSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp SEEEEEEETTSCEEEEEE
T ss_pred CCeEEEEeCCCEEEEEeC
Confidence 578999999999999963
No 44
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=55.88 E-value=5.1 Score=29.12 Aligned_cols=16 Identities=13% Similarity=-0.074 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+.+|||.
T Consensus 325 ~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 325 SKFTTVGWDHKVLHHH 340 (357)
T ss_dssp TEEEEEETTSCEEEEE
T ss_pred CEEEEEcCCCeEEEEE
Confidence 4689999999999996
No 45
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=55.49 E-value=5.4 Score=29.50 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=14.2
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 393 ~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWE 408 (410)
T ss_dssp SCEEEEETTSEEEEEC
T ss_pred CEEEEEeCCCcEEEEe
Confidence 4689999999999994
No 46
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=54.55 E-value=6.4 Score=28.02 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=15.2
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
+.|++++.|+.+|||.-
T Consensus 108 ~~l~s~s~d~~i~iw~~ 124 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKI 124 (447)
T ss_dssp SEEEEEECSSCEEEEEE
T ss_pred ceEEEeCCCCeEEEEec
Confidence 57899999999999974
No 47
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=54.34 E-value=6.3 Score=28.50 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||-
T Consensus 77 ~~l~s~s~Dg~v~vWd 92 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWD 92 (354)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred CEEEEEeCCCeEEEEE
Confidence 4689999999999995
No 48
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=53.93 E-value=6.9 Score=26.54 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.9
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
+.|+|++.|+.+|||.=
T Consensus 328 ~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 328 TSYASGGEDGFIRLHHF 344 (369)
T ss_dssp SEEEEEETTSEEEEEEE
T ss_pred CEEEEEcCCCeEEEEEC
Confidence 47899999999999963
No 49
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=53.49 E-value=6.7 Score=27.90 Aligned_cols=16 Identities=19% Similarity=0.549 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+.+|||.
T Consensus 68 ~~l~s~s~Dg~v~iWd 83 (340)
T 1got_B 68 RLLLSASQDGKLIIWD 83 (340)
T ss_dssp SEEEEEETTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEE
Confidence 4689999999999995
No 50
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=52.59 E-value=5.7 Score=32.19 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=14.2
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 339 ~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 339 SHLLAGQKDGNIFVYH 354 (356)
T ss_dssp SEEEEECTTSCEEEEE
T ss_pred CEEEEEECCCcEEEec
Confidence 3689999999999995
No 51
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=52.36 E-value=6.8 Score=27.87 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=14.6
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||-
T Consensus 239 ~~l~s~s~d~~v~iwd 254 (340)
T 1got_B 239 NAFATGSDDATCRLFD 254 (340)
T ss_dssp SEEEEEETTSCEEEEE
T ss_pred CEEEEEcCCCcEEEEE
Confidence 5789999999999995
No 52
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=51.61 E-value=7.3 Score=26.61 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=15.1
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
.+.|++++.|+.++||.
T Consensus 69 ~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWK 85 (379)
T ss_dssp CSEEEEEETTSCEEEEE
T ss_pred CCEEEEeccCCEEEEEE
Confidence 36789999999999995
No 53
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=51.20 E-value=7.7 Score=25.81 Aligned_cols=16 Identities=31% Similarity=0.690 Sum_probs=14.2
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+|||.
T Consensus 30 ~~l~s~~~dg~v~vw~ 45 (313)
T 3odt_A 30 SKVASVSRDGTVRLWS 45 (313)
T ss_dssp TEEEEEETTSEEEEEE
T ss_pred CEEEEEEcCCcEEEEE
Confidence 3589999999999996
No 54
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=50.28 E-value=7.6 Score=31.15 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=14.8
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||-
T Consensus 324 ~~laS~S~D~tvklWD 339 (524)
T 2j04_B 324 TVVSTVAVDGYFYIFN 339 (524)
T ss_dssp CEEEEEETTSEEEEEC
T ss_pred eEEEEeccCCeEEEEE
Confidence 5789999999999996
No 55
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=50.16 E-value=8.3 Score=26.94 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=15.9
Q ss_pred eeeeeeeeCceeeEEeee
Q psy17930 24 NMLVTSCRDNICRLWVET 41 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ET 41 (110)
+.|+|++.|+.+|||.-.
T Consensus 27 ~~l~s~~~dg~i~iw~~~ 44 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNK 44 (397)
T ss_dssp SEEEEEETTSEEEEEESB
T ss_pred CeEEEEcCCCEEEEEECC
Confidence 789999999999999643
No 56
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=50.11 E-value=9.5 Score=25.82 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=14.6
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+|+|-
T Consensus 142 ~~l~~~~~dg~i~vwd 157 (368)
T 3mmy_A 142 SCVMTGSWDKTLKFWD 157 (368)
T ss_dssp EEEEEEETTSEEEEEC
T ss_pred CEEEEccCCCcEEEEE
Confidence 5689999999999997
No 57
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=49.94 E-value=7.7 Score=26.37 Aligned_cols=16 Identities=38% Similarity=0.833 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.++||.
T Consensus 129 ~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 129 NLLLSVSKDHALRLWN 144 (366)
T ss_dssp TEEEEEETTSCEEEEE
T ss_pred CEEEEEeCCCeEEEEE
Confidence 5789999999999996
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=49.89 E-value=7.6 Score=26.84 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.3
Q ss_pred eeeeeeeeCceeeEEeee
Q psy17930 24 NMLVTSCRDNICRLWVET 41 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ET 41 (110)
+.|+|++.|+.++||.=.
T Consensus 347 ~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 347 QELYSGSRDCNILAWVPS 364 (408)
T ss_dssp TEEEEEETTSCEEEEEEC
T ss_pred CEEEEECCCCeEEEEeCC
Confidence 568999999999999643
No 59
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=49.71 E-value=7.9 Score=27.82 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=14.8
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+.++||.
T Consensus 95 ~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 95 NVIASGSEDCTVMVWE 110 (402)
T ss_dssp TEEEEEETTSEEEEEE
T ss_pred CEEEEEeCCCeEEEEE
Confidence 5889999999999996
No 60
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=49.42 E-value=8.8 Score=27.63 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
..|+|++.|+++|||.
T Consensus 422 ~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 422 PLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEETTSCEEEEC
T ss_pred eEEEEEcCCceEEEeC
Confidence 3899999999999994
No 61
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=48.89 E-value=8.3 Score=28.18 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+++|||-
T Consensus 282 ~~lasgs~D~~V~iwd 297 (365)
T 4h5i_A 282 ELAVLASNDNSIALVK 297 (365)
T ss_dssp CEEEEEETTSCEEEEE
T ss_pred CceEEEcCCCEEEEEE
Confidence 4689999999999996
No 62
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=48.66 E-value=8.9 Score=26.50 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=14.6
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+.++||.
T Consensus 57 ~~l~~~~~dg~i~iw~ 72 (408)
T 4a11_B 57 RYMLSGGSDGVIVLYD 72 (408)
T ss_dssp CEEEEEETTSCEEEEE
T ss_pred CEEEEEcCCCeEEEEE
Confidence 5789999999999996
No 63
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=48.53 E-value=9 Score=28.30 Aligned_cols=17 Identities=24% Similarity=0.671 Sum_probs=15.0
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
.+.|+|++.|+.+|||-
T Consensus 308 g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp CCEEEEEETTSEEEEEE
T ss_pred CCEEEEEeCCCeEEEEE
Confidence 35799999999999996
No 64
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=48.38 E-value=8 Score=27.79 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=15.0
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
|+|++++.|+.++||-
T Consensus 145 ~~l~s~~~dg~i~iwd 160 (402)
T 2aq5_A 145 NVLLSAGCDNVILVWD 160 (402)
T ss_dssp TEEEEEETTSCEEEEE
T ss_pred CEEEEEcCCCEEEEEE
Confidence 6899999999999996
No 65
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=48.33 E-value=9.4 Score=26.19 Aligned_cols=16 Identities=31% Similarity=0.762 Sum_probs=14.6
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.++||-
T Consensus 78 ~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 78 NLLVSASDDKTLKIWD 93 (312)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred CEEEEECCCCEEEEEE
Confidence 6789999999999995
No 66
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=47.24 E-value=9.4 Score=26.19 Aligned_cols=16 Identities=31% Similarity=0.713 Sum_probs=14.6
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+|+|-
T Consensus 120 ~~l~s~~~d~~i~iwd 135 (312)
T 4ery_A 120 NLIVSGSFDESVRIWD 135 (312)
T ss_dssp SEEEEEETTSCEEEEE
T ss_pred CEEEEEeCCCcEEEEE
Confidence 5789999999999995
No 67
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=46.56 E-value=11 Score=26.23 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=15.4
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
+.|+|++.|+.++||.-
T Consensus 377 ~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp CEEEEEETTTEEEEEEE
T ss_pred ceEEEecCCCcEEEEEc
Confidence 68999999999999974
No 68
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=46.30 E-value=8.7 Score=27.18 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.7
Q ss_pred eeeeeeeeCceeeEEeee
Q psy17930 24 NMLVTSCRDNICRLWVET 41 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ET 41 (110)
+.|+|++.|+.+|||.=.
T Consensus 347 ~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 347 ALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp EEEEEETTTEEEEEEEEC
T ss_pred CEEEEecCCccEEEEecc
Confidence 478999999999999744
No 69
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=46.24 E-value=10 Score=27.08 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.3
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||-
T Consensus 93 ~~l~s~s~D~~i~lWd 108 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWD 108 (321)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred CEEEEEeCCCcEEEEE
Confidence 4689999999999995
No 70
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=45.87 E-value=9.5 Score=27.56 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.3
Q ss_pred eeeeeeeeCce-eeEEe
Q psy17930 24 NMLVTSCRDNI-CRLWV 39 (110)
Q Consensus 24 NVLLT~C~Dni-CRiW~ 39 (110)
+.|+|++.|++ +|||-
T Consensus 208 ~~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 208 DMVATCSQDGTIIRVFK 224 (355)
T ss_dssp SEEEEEETTCSEEEEEE
T ss_pred CEEEEEeCCCCEEEEEE
Confidence 56899999997 99995
No 71
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=45.63 E-value=10 Score=27.58 Aligned_cols=16 Identities=31% Similarity=0.675 Sum_probs=14.2
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+++|||-
T Consensus 178 ~~l~s~s~d~~v~iwd 193 (393)
T 1erj_A 178 DKLVSGSGDRTVRIWD 193 (393)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred CEEEEecCCCcEEEEE
Confidence 4689999999999994
No 72
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=45.40 E-value=11 Score=30.55 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=13.6
Q ss_pred eeeeeeeCceeeEEe
Q psy17930 25 MLVTSCRDNICRLWV 39 (110)
Q Consensus 25 VLLT~C~DniCRiW~ 39 (110)
.|++++.|+++|||-
T Consensus 195 ~LaSgS~D~TIkIWD 209 (356)
T 2w18_A 195 ALLGTTIMNNIVIWN 209 (356)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred eEEEecCCCcEEEEE
Confidence 489999999999995
No 73
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=45.12 E-value=13 Score=25.29 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=15.2
Q ss_pred eeeeeeeCceeeEEeee
Q psy17930 25 MLVTSCRDNICRLWVET 41 (110)
Q Consensus 25 VLLT~C~DniCRiW~ET 41 (110)
+|++++.|+.++||.=.
T Consensus 274 ~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 274 LFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEEEEETTSEEEEEEEE
T ss_pred EEEEEeCCCcEEEeecC
Confidence 78999999999999754
No 74
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=45.04 E-value=10 Score=29.96 Aligned_cols=16 Identities=25% Similarity=0.628 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 675 ~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 675 STLFSGYTDGVIRVWG 690 (694)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred CEEEEEcCCCeEEEEe
Confidence 4689999999999995
No 75
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=44.88 E-value=11 Score=27.19 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+++|||.
T Consensus 253 ~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 253 SKLAVVSDKWTLHVFE 268 (355)
T ss_dssp CEEEEEETTCEEEEEE
T ss_pred CEEEEEECCCEEEEEE
Confidence 5689999999999996
No 76
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=44.85 E-value=11 Score=26.77 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=15.0
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
+.|+|++.|+.+|||.-
T Consensus 41 ~~la~g~~dg~v~iw~~ 57 (447)
T 3dw8_B 41 ELLATGDKGGRVVIFQQ 57 (447)
T ss_dssp SEEEEEETTSEEEEEEE
T ss_pred CEEEEEcCCCeEEEEEe
Confidence 56899999999999973
No 77
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=44.31 E-value=11 Score=26.60 Aligned_cols=16 Identities=0% Similarity=-0.076 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+.+|||-
T Consensus 140 ~~l~s~s~dg~i~~wd 155 (343)
T 3lrv_A 140 EYFIWADNRGTIGFQS 155 (343)
T ss_dssp CEEEEEETTCCEEEEE
T ss_pred CEEEEEeCCCcEEEEE
Confidence 4689999999999996
No 78
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=43.98 E-value=12 Score=25.45 Aligned_cols=16 Identities=31% Similarity=0.653 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+++|.
T Consensus 130 ~~l~~~~~d~~i~vwd 145 (357)
T 3i2n_A 130 PEIVTGSRDGTVKVWD 145 (357)
T ss_dssp CEEEEEETTSCEEEEC
T ss_pred cEEEEEeCCCeEEEEe
Confidence 4789999999999995
No 79
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=43.87 E-value=10 Score=27.50 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=14.8
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+.+|+|-
T Consensus 133 ~~l~sgs~dg~i~vwd 148 (464)
T 3v7d_B 133 NYVITGADDKMIRVYD 148 (464)
T ss_dssp TEEEEEETTSCEEEEE
T ss_pred CEEEEEcCCCcEEEEE
Confidence 6789999999999996
No 80
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=43.56 E-value=13 Score=26.16 Aligned_cols=16 Identities=25% Similarity=0.104 Sum_probs=14.8
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+|||.
T Consensus 132 ~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRD 147 (383)
T ss_dssp EEEEEEETTTEEEEEE
T ss_pred CEEEEEeCCCEEEEEE
Confidence 6789999999999995
No 81
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=43.33 E-value=6.1 Score=29.73 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=16.1
Q ss_pred CCccCCcccccccccccceeeeeeee
Q psy17930 6 GGGQGPSRSVKTLEGSVSNMLVTSCR 31 (110)
Q Consensus 6 ~g~~wrktsrYMprg~V~NVLLT~C~ 31 (110)
++..=|+||-|+|++++-+|-+++..
T Consensus 72 ~~~~~~~TSfflP~gs~k~v~VsS~t 97 (163)
T 3ddc_B 72 AATTDKRTSFYLPLDAIKQMHISSTT 97 (163)
T ss_dssp --------CEEEEEEEEEEEEEETTC
T ss_pred ccccccceeEECCCCceEEEEEccCC
Confidence 34456899999999999999888754
No 82
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=43.24 E-value=10 Score=28.19 Aligned_cols=15 Identities=20% Similarity=0.696 Sum_probs=13.7
Q ss_pred eeeeeeeeCceeeEE
Q psy17930 24 NMLVTSCRDNICRLW 38 (110)
Q Consensus 24 NVLLT~C~DniCRiW 38 (110)
+.|+|++.|+++|+|
T Consensus 562 ~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 562 QTIASASSDKTVKLW 576 (577)
T ss_dssp SCEEEEETTSCEEEE
T ss_pred CEEEEEeCCCEEEEe
Confidence 468999999999999
No 83
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=43.13 E-value=13 Score=25.20 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.++||.
T Consensus 87 ~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWD 102 (369)
T ss_dssp SEEEEEETTTEEEEEE
T ss_pred CEEEEEeCCCeEEEEE
Confidence 5789999999999995
No 84
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=42.14 E-value=12 Score=27.34 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.++||.
T Consensus 160 ~~lasgs~Dg~v~iWd 175 (420)
T 4gga_A 160 NYLAVGTSSAEVQLWD 175 (420)
T ss_dssp SEEEEEETTSCEEEEE
T ss_pred CEEEEEECCCeEEEEE
Confidence 5689999999999996
No 85
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=42.06 E-value=13 Score=26.24 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=15.0
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
+.|++++.|+.+|||.=
T Consensus 87 ~~l~s~~~dg~i~iwd~ 103 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDY 103 (383)
T ss_dssp TEEEEEEBTSCEEEEET
T ss_pred CEEEEEcCCCeEEEEeC
Confidence 57899999999999963
No 86
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=41.65 E-value=12 Score=30.04 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=14.9
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+++|||.
T Consensus 226 ~~LAs~s~DgtvrlWd 241 (524)
T 2j04_B 226 GCLSFVSQEGTINFLE 241 (524)
T ss_dssp CEEEEEETTSCEEEEE
T ss_pred ceEEEEecCCeEEEEE
Confidence 5899999999999996
No 87
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=41.58 E-value=13 Score=25.99 Aligned_cols=16 Identities=44% Similarity=0.789 Sum_probs=14.6
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+|||.
T Consensus 276 ~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 276 HLLLSSGRDNTVLLWN 291 (416)
T ss_dssp SCEEEEESSSEEEEEC
T ss_pred CeEEEEeCCCCEEEee
Confidence 5789999999999996
No 88
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=41.57 E-value=14 Score=26.78 Aligned_cols=15 Identities=33% Similarity=0.753 Sum_probs=14.1
Q ss_pred eeeeeeeCceeeEEe
Q psy17930 25 MLVTSCRDNICRLWV 39 (110)
Q Consensus 25 VLLT~C~DniCRiW~ 39 (110)
.|+|++.|+.+++|.
T Consensus 175 ~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEETTSCEEEEE
T ss_pred EEEEEeCCCCEEEEE
Confidence 789999999999996
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=41.29 E-value=14 Score=25.81 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=15.0
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
+.|++++.|+.+|||.=
T Consensus 159 ~~l~~~~~d~~i~iwd~ 175 (377)
T 3dwl_C 159 VLLAAGCADRKAYVLSA 175 (377)
T ss_dssp SEEEEEESSSCEEEEEE
T ss_pred CEEEEEeCCCEEEEEEE
Confidence 47899999999999973
No 90
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=41.00 E-value=14 Score=25.15 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=15.4
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
.+.|++++.|+.+++|.
T Consensus 112 ~~~l~s~~~d~~i~iwd 128 (342)
T 1yfq_A 112 DDKLIAASWDGLIEVID 128 (342)
T ss_dssp TTEEEEEETTSEEEEEC
T ss_pred CCEEEEEcCCCeEEEEc
Confidence 57889999999999996
No 91
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=40.72 E-value=14 Score=26.08 Aligned_cols=16 Identities=25% Similarity=0.634 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.++||-
T Consensus 152 ~~l~s~s~d~~i~iwd 167 (420)
T 3vl1_A 152 EALISSSQDMQLKIWS 167 (420)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred CEEEEEeCCCeEEEEe
Confidence 3689999999999996
No 92
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=40.64 E-value=13 Score=27.66 Aligned_cols=17 Identities=18% Similarity=0.577 Sum_probs=14.8
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
+.|+|++.|+++|||-.
T Consensus 70 ~~las~~~d~~i~vWd~ 86 (577)
T 2ymu_A 70 QTIASASDDKTVKLWNR 86 (577)
T ss_dssp SEEEEEETTSCEEEEET
T ss_pred CEEEEEeCCCEEEEEEC
Confidence 46899999999999974
No 93
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=40.45 E-value=12 Score=26.16 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=14.7
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+|||.
T Consensus 319 ~~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 319 DLFACASFDNKIEVQT 334 (416)
T ss_dssp TEEEECCSSSEEEEEE
T ss_pred CEEEEEecCCcEEEEE
Confidence 5789999999999997
No 94
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=39.63 E-value=18 Score=30.72 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=15.3
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
.+.|+|++.|+++|||-
T Consensus 447 g~~laSgs~DgtVrlWd 463 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYD 463 (902)
T ss_dssp EEEEEEEETTSEEEEEE
T ss_pred CcEEEEecCCCcEEEEE
Confidence 35789999999999997
No 95
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=39.41 E-value=15 Score=24.52 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=14.4
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+++|.
T Consensus 319 ~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 319 KYIVTGSGDKKATVYE 334 (337)
T ss_dssp CEEEEEETTSCEEEEE
T ss_pred CEEEEecCCCeEEEEE
Confidence 5689999999999995
No 96
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=39.34 E-value=14 Score=25.48 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=14.6
Q ss_pred eeeeeeeCceeeEEee
Q psy17930 25 MLVTSCRDNICRLWVE 40 (110)
Q Consensus 25 VLLT~C~DniCRiW~E 40 (110)
.|++++.|+.++||.-
T Consensus 60 ~l~~~~~dg~i~iw~~ 75 (425)
T 1r5m_A 60 ILAYGEKNSVARLARI 75 (425)
T ss_dssp EEEEEETBTEEEEEEE
T ss_pred EEEEecCCceEEEEEE
Confidence 7899999999999965
No 97
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=39.26 E-value=16 Score=25.07 Aligned_cols=17 Identities=12% Similarity=-0.044 Sum_probs=14.9
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
+.|++++.|+.+|+|.=
T Consensus 215 ~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 215 SRVAWVSHDSTVCLADA 231 (372)
T ss_dssp SEEEEEETTTEEEEEEG
T ss_pred CEEEEEeCCCEEEEEEC
Confidence 47899999999999963
No 98
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=38.90 E-value=14 Score=27.30 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=13.3
Q ss_pred eeeeeeCceeeEEe
Q psy17930 26 LVTSCRDNICRLWV 39 (110)
Q Consensus 26 LLT~C~DniCRiW~ 39 (110)
|+|++.|+.+|||.
T Consensus 598 l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 598 LVSSGADACIKRWN 611 (615)
T ss_dssp EEEEETTSCEEEEE
T ss_pred eEEecCCceEEEEe
Confidence 89999999999995
No 99
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=37.30 E-value=15 Score=28.75 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
..|+|++.|+++|||.
T Consensus 549 ~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 549 VRLATGSLDNSVIVWN 564 (611)
T ss_dssp SEEEEEETTSCEEEEE
T ss_pred CEEEEEECCCcEEEEE
Confidence 4689999999999996
No 100
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=36.47 E-value=17 Score=28.49 Aligned_cols=16 Identities=13% Similarity=0.530 Sum_probs=14.3
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|+|++.|+++|||.
T Consensus 252 ~~l~s~s~D~~v~lWd 267 (611)
T 1nr0_A 252 TKIASASADKTIKIWN 267 (611)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred CEEEEEeCCCeEEEEe
Confidence 4689999999999996
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=36.31 E-value=18 Score=26.62 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=14.6
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+|||.
T Consensus 211 ~~l~s~~~d~~i~vwd 226 (450)
T 2vdu_B 211 QFIITSDRDEHIKISH 226 (450)
T ss_dssp EEEEEEETTSCEEEEE
T ss_pred cEEEEEcCCCcEEEEE
Confidence 4789999999999996
No 102
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.23 E-value=17 Score=26.24 Aligned_cols=16 Identities=25% Similarity=0.574 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+|||-
T Consensus 230 ~~l~s~~~d~~v~iwd 245 (401)
T 4aez_A 230 LQLASGGNDNVVQIWD 245 (401)
T ss_dssp SEEEEEETTSCEEEEE
T ss_pred CEEEEEeCCCeEEEcc
Confidence 5789999999999995
No 103
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=35.16 E-value=17 Score=26.46 Aligned_cols=16 Identities=19% Similarity=0.696 Sum_probs=14.6
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+++|.
T Consensus 170 ~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWN 185 (445)
T ss_dssp TEEEEEETTSCEEEEE
T ss_pred CEEEEEeCCCeEEEEE
Confidence 5789999999999996
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=35.12 E-value=18 Score=26.43 Aligned_cols=16 Identities=25% Similarity=0.696 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+++|.
T Consensus 184 ~~l~sg~~dg~i~vwd 199 (435)
T 1p22_A 184 RVIITGSSDSTVRVWD 199 (435)
T ss_dssp SEEEEEETTSCEEEEE
T ss_pred CEEEEEcCCCeEEEEE
Confidence 6789999999999996
No 105
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=34.91 E-value=17 Score=27.84 Aligned_cols=17 Identities=12% Similarity=0.134 Sum_probs=15.0
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
.+.|++++.|+++|||-
T Consensus 162 ~~~las~s~Dg~v~iwD 178 (434)
T 2oit_A 162 PSMVAVCLADGSIAVLQ 178 (434)
T ss_dssp TTEEEEEETTSCEEEEE
T ss_pred CCEEEEEECCCeEEEEE
Confidence 46799999999999994
No 106
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=34.40 E-value=20 Score=26.44 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=14.5
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+|||-
T Consensus 253 ~~l~s~~~d~~v~vwd 268 (450)
T 2vdu_B 253 YLLLSAGGDDKIFAWD 268 (450)
T ss_dssp TEEEEEESSSEEEEEE
T ss_pred CEEEEEeCCCeEEEEE
Confidence 5789999999999996
No 107
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=33.44 E-value=21 Score=25.96 Aligned_cols=16 Identities=38% Similarity=0.777 Sum_probs=14.8
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.++||.
T Consensus 373 ~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 373 NFVITSSDDGTVKLWD 388 (445)
T ss_dssp SEEEEEETTSEEEEEE
T ss_pred CEEEEEeCCCeEEEEE
Confidence 6799999999999996
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=32.66 E-value=18 Score=26.38 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=14.3
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.++||.
T Consensus 396 ~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 396 FQIVSSSHDDTILIWD 411 (435)
T ss_dssp SCEEECCSSSEEEEEC
T ss_pred CEEEEEeCCCEEEEEE
Confidence 4589999999999996
No 109
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=30.65 E-value=21 Score=23.72 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=14.5
Q ss_pred cCCCCccCCccccccccccc
Q psy17930 3 KADGGGQGPSRSVKTLEGSV 22 (110)
Q Consensus 3 ~~~~g~~wrktsrYMprg~V 22 (110)
-.|+|+.|||-+.-.-+++-
T Consensus 16 ~~dDGy~WRKYGQK~ikgs~ 35 (78)
T 1wj2_A 16 LLDDGYRWRKYGQKVVKGNP 35 (78)
T ss_dssp CCCSSSCBCCCEEECCTTCS
T ss_pred cCCCCchhhhCcccccCCCc
Confidence 46899999998766544443
No 110
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.22 E-value=26 Score=25.27 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=14.3
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.+|||.
T Consensus 362 ~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 362 RILSTAASDENLKFWR 377 (401)
T ss_dssp SEEEEECTTSEEEEEE
T ss_pred CEEEEEeCCCcEEEEE
Confidence 4689999999999996
No 111
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=30.22 E-value=13 Score=24.64 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=14.9
Q ss_pred cCCCCccCCccccccccccc
Q psy17930 3 KADGGGQGPSRSVKTLEGSV 22 (110)
Q Consensus 3 ~~~~g~~wrktsrYMprg~V 22 (110)
-.|+|+.|||-+.-.-+++-
T Consensus 13 ~~~DGy~WRKYGQK~ikgs~ 32 (76)
T 2ayd_A 13 IVNDGYRWRKYGQKSVKGSP 32 (76)
T ss_dssp CCCCSSCEEEEEEECCTTCS
T ss_pred cCCCCchhhhCcccccCCCC
Confidence 45899999998877655543
No 112
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=29.15 E-value=27 Score=25.85 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=15.5
Q ss_pred ceeeeeeeeCceeeEEee
Q psy17930 23 SNMLVTSCRDNICRLWVE 40 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~E 40 (110)
.+.|++++.|+.+|||.-
T Consensus 553 ~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 553 EDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp CCEEEEEETTSCEEEEES
T ss_pred CCEEEEEcCCCcEEEEEC
Confidence 357899999999999964
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=28.11 E-value=28 Score=25.65 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.8
Q ss_pred eeeeeeeeCceeeEEee
Q psy17930 24 NMLVTSCRDNICRLWVE 40 (110)
Q Consensus 24 NVLLT~C~DniCRiW~E 40 (110)
++|+|++.|+.++||.=
T Consensus 291 ~~l~tg~~dg~v~vwd~ 307 (430)
T 2xyi_A 291 FILATGSADKTVALWDL 307 (430)
T ss_dssp TEEEEEETTSEEEEEET
T ss_pred CEEEEEeCCCeEEEEeC
Confidence 37899999999999973
No 114
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae}
Probab=28.11 E-value=17 Score=23.27 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=19.0
Q ss_pred chhHHHHHHHHhccceeeeccCc
Q psy17930 70 TLDRDMYNLLQCGMDTYLATEGS 92 (110)
Q Consensus 70 ~K~ri~~~L~~~~~~~~~~~~~~ 92 (110)
+-+++++.|++.|+|.++.+...
T Consensus 6 Rl~~lr~~m~~~~~da~li~~~~ 28 (138)
T 3pn9_A 6 KLQQILTYLESEKLDVAVVSDPV 28 (138)
T ss_dssp HHHHHHHHHHHHTCSEEEECCHH
T ss_pred HHHHHHHHHHHCCCCEEEEcCcC
Confidence 34889999999999999987543
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=27.94 E-value=33 Score=25.23 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=14.0
Q ss_pred eeeeeeeCceeeEEe
Q psy17930 25 MLVTSCRDNICRLWV 39 (110)
Q Consensus 25 VLLT~C~DniCRiW~ 39 (110)
+|++++.||.++||.
T Consensus 393 ~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 393 IICSVSEDNIMQVWQ 407 (430)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred EEEEEECCCCEEEeE
Confidence 789999999999996
No 116
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Probab=24.43 E-value=45 Score=21.55 Aligned_cols=24 Identities=8% Similarity=-0.107 Sum_probs=19.2
Q ss_pred ccchhHHHHHHHHhccceeeeccC
Q psy17930 68 TPTLDRDMYNLLQCGMDTYLATEG 91 (110)
Q Consensus 68 ~~~K~ri~~~L~~~~~~~~~~~~~ 91 (110)
+.+-+++++.|++.|+|.+|.+..
T Consensus 3 m~Rl~~l~~~m~~~glDa~li~~~ 26 (140)
T 3i7m_A 3 MTKLEQIQQWTAQHHASMTYLSNP 26 (140)
T ss_dssp -CHHHHHHHHHHHTTCSEEEECCH
T ss_pred chHHHHHHHHHHHcCCCEEEECCC
Confidence 335589999999999999987754
No 117
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=23.40 E-value=35 Score=24.65 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=21.3
Q ss_pred hHHHHHHHHhccceeeeccCceeE
Q psy17930 72 DRDMYNLLQCGMDTYLATEGSLVS 95 (110)
Q Consensus 72 ~ri~~~L~~~~~~~~~~~~~~~~~ 95 (110)
.-|-.+|++.|+++++-+|-|||.
T Consensus 73 ~Di~raL~~VGI~P~id~~~SLv~ 96 (117)
T 3tl8_B 73 LDIGSALQNVGINPSIDLGESLVQ 96 (117)
T ss_dssp HHHHHHHHHTTCCCCCCCCSCBSC
T ss_pred HHHHHHHHhCCCCCCCcchHHHhh
Confidence 568899999999999999999873
No 118
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=22.77 E-value=28 Score=24.59 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.8
Q ss_pred hHHHHHHHHhccceeeeccCcee
Q psy17930 72 DRDMYNLLQCGMDTYLATEGSLV 94 (110)
Q Consensus 72 ~ri~~~L~~~~~~~~~~~~~~~~ 94 (110)
.-|-.+|++.|+++++-++-|||
T Consensus 56 ~Di~raL~~vGI~p~id~~~Slv 78 (101)
T 2lf6_A 56 PDLRRALESVGINPFIPEELSLV 78 (101)
T ss_dssp HHHHHHHHHHTCCSCCCTTTTTT
T ss_pred HHHHHHHHcCCCCCCCcchHHHh
Confidence 56889999999999999998887
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=21.70 E-value=41 Score=27.42 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=15.3
Q ss_pred ceeeeeeeeCceeeEEe
Q psy17930 23 SNMLVTSCRDNICRLWV 39 (110)
Q Consensus 23 ~NVLLT~C~DniCRiW~ 39 (110)
.+.|+|++.|+.++||.
T Consensus 67 ~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 67 GTILASCSYDGKVLIWK 83 (753)
T ss_dssp CSEEEEEETTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEE
Confidence 36789999999999996
No 120
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=21.44 E-value=40 Score=25.73 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=14.2
Q ss_pred eeeeeeeeCceeeEEe
Q psy17930 24 NMLVTSCRDNICRLWV 39 (110)
Q Consensus 24 NVLLT~C~DniCRiW~ 39 (110)
+.|++++.|+.++||.
T Consensus 205 ~~lasgs~dg~v~iwd 220 (434)
T 2oit_A 205 KQLAVGKQNGTVVQYL 220 (434)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCCcEEEEc
Confidence 5689999999999994
No 121
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=20.50 E-value=46 Score=18.48 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=11.6
Q ss_pred cchhHHHHHHHHhc
Q psy17930 69 PTLDRDMYNLLQCG 82 (110)
Q Consensus 69 ~~K~ri~~~L~~~~ 82 (110)
.-|.||+|.|.|-|
T Consensus 9 ~EkHkILHrLLQ~~ 22 (26)
T 3bej_E 9 TERHKILHRLLQEG 22 (26)
T ss_pred HHHHHHHHHHHHcC
Confidence 35689999999976
Done!