RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17930
         (110 letters)



>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat. 
          Length = 39

 Score = 25.0 bits (55), Expect = 2.4
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 23 SNMLVTSCRDNICRLW 38
           N+L +   D   R+W
Sbjct: 23 GNLLASGSDDGTVRVW 38


>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated.
          Length = 994

 Score = 27.0 bits (60), Expect = 2.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 43  LPDDG-LINMSQFDPMAAQNPKFIQVTPTLDRDM 75
           LPDD  +I+M + DP A + P + +  P L RD+
Sbjct: 575 LPDDADVIDMEKIDPDAVELPGWYRPNPGLARDL 608


>gnl|CDD|227500 COG5173, SEC6, Exocyst complex subunit SEC6 [Intracellular
           trafficking and secretion].
          Length = 742

 Score = 26.8 bits (59), Expect = 2.6
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 12  SRSVKTLEGSVSNMLVTSCRDNICRLWVETVLPDDGLINMSQFDPMAAQNPKFI-QVTPT 70
           +R  + L+  V   +  S ++   RL  E +  + G +NM        ++  FI +    
Sbjct: 247 TRKTRKLKDFVIKSIEVSVKEKFDRLRNEYIFDNSGELNMD----FIFKDLSFIRENISL 302

Query: 71  LDRDMYNLLQCGMDTYLATEGSLVSLSTDISSDD 104
                 N+L    + Y   +  L+ L TD  ++ 
Sbjct: 303 SFPPFDNILTLYHNNY---QECLLKLFTDEVTER 333


>gnl|CDD|197651 smart00320, WD40, WD40 repeats.  Note that these repeats are
          permuted with respect to the structural repeats
          (blades) of the beta propeller domain.
          Length = 40

 Score = 24.2 bits (53), Expect = 4.7
 Identities = 4/16 (25%), Positives = 6/16 (37%)

Query: 23 SNMLVTSCRDNICRLW 38
             L +   D   +LW
Sbjct: 24 GKYLASGSDDGTIKLW 39


>gnl|CDD|129760 TIGR00677, fadh2_euk, methylenetetrahydrofolate reductase,
          eukaryotic type.  The enzyme activities
          methylenetetrahydrofolate reductase (EC 1.5.1.20) and
          5,10-methylenetetrahydrofolate reductase (FADH) (EC
          1.7.99.5) differ in that 1.5.1.20 (assigned in many
          eukaryotes) is defined to use NADP+ as an acceptor,
          while 1.7.99.5 (assigned in many bacteria) is flexible
          with respect to the acceptor; both convert
          5-methyltetrahydrofolate to
          5,10-methylenetetrahydrofolate. From a larger set of
          proteins assigned as 1.5.1.20 and 1.7.99.5, this model
          describes the subset of proteins found in eukaryotes
          and designated 1.5.1.20. This protein is an
          FAD-containing flavoprotein [Biosynthesis of cofactors,
          prosthetic groups, and carriers, Folic acid].
          Length = 281

 Score = 25.1 bits (55), Expect = 9.1
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 46 DGLIN-MSQFDPMAAQNPKFIQVT 68
          +G+ N   + D M A  P FI +T
Sbjct: 13 EGVQNLYERMDRMVASGPLFIDIT 36


>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase.
          Length = 405

 Score = 25.2 bits (55), Expect = 9.9
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 36  RLWVETVLPDDGLINMSQFDPMAAQNPKFIQVTPTLDRD 74
           + W E   P DG    ++F    A+    + V+P L+RD
Sbjct: 147 KRWCEFAEPVDG--ESTKFLQELARKYNMVIVSPILERD 183


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,173,076
Number of extensions: 407582
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 11
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.2 bits)