RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17930
         (110 letters)



>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 342

 Score = 29.0 bits (63), Expect = 0.10
 Identities = 4/31 (12%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 9  QGPSRSVKTLEGS-VSNMLVTSCRDNICRLW 38
          Q P   +  ++     ++L+ +  D    ++
Sbjct: 8  QAPKDYISDIKIIPSKSLLLITSWDGSLTVY 38


>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 287

 Score = 25.7 bits (54), Expect = 1.5
 Identities = 7/30 (23%), Positives = 10/30 (33%)

Query: 9   QGPSRSVKTLEGSVSNMLVTSCRDNICRLW 38
                 V  L     + LV+S  D   + W
Sbjct: 255 NAHKDGVNNLLWETPSTLVSSGADACIKRW 284



 Score = 24.5 bits (51), Expect = 4.0
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 7/36 (19%)

Query: 10 GPSRSVKTLEG------SVS-NMLVTSCRDNICRLW 38
          G    +KT+ G      +++ N L++   D     W
Sbjct: 1  GHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEW 36


>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 393

 Score = 25.6 bits (54), Expect = 1.5
 Identities = 5/80 (6%), Positives = 23/80 (28%), Gaps = 4/80 (5%)

Query: 8  GQGPSRSVKTLEGSVSNMLVTSCRDNICRLW-VETVLPDDGLINMSQF--DPMAAQNPKF 64
          G+     + ++    ++  V+   D   ++W  + +  ++                +   
Sbjct: 10 GKAHDADIFSVSAC-NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 65 IQVTPTLDRDMYNLLQCGMD 84
          +Q       ++  +      
Sbjct: 69 LQAIERDAFELCLVATTSFS 88


>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
          7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 342

 Score = 25.5 bits (54), Expect = 1.6
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 10/39 (25%)

Query: 10 GPSRSVKTLEG-------SVS---NMLVTSCRDNICRLW 38
          G  +S K L+G        +    N +V+   DN  ++W
Sbjct: 4  GELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW 42


>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 355

 Score = 24.5 bits (51), Expect = 4.0
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 9  QGPSRSVKTLEGSVSNMLVTSCRDNICRLW 38
          +G   SV T      N ++T   D + R++
Sbjct: 9  RGHMTSVITCLQFEDNYVITGADDKMIRVY 38


>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
           (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 299

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 7   GGQGPSRSVKTLEGSVSNMLVTSCRDNICRLW 38
            G     SV ++       +V++ +D+  + W
Sbjct: 264 KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295



 Score = 23.8 bits (49), Expect = 5.8
 Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 1/31 (3%)

Query: 9  QGPSRSVKTLEGSV-SNMLVTSCRDNICRLW 38
           G ++++  L  S     L ++  +     W
Sbjct: 9  YGHNKAITALSSSADGKTLFSADAEGHINSW 39


>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1
          (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 293

 Score = 24.0 bits (50), Expect = 5.0
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 23 SNMLVTSCRDNICRLW 38
             +V+  RDN  ++W
Sbjct: 25 DQKIVSGLRDNTIKIW 40



 Score = 23.7 bits (49), Expect = 7.4
 Identities = 4/16 (25%), Positives = 8/16 (50%)

Query: 23  SNMLVTSCRDNICRLW 38
              +V+S  D+   +W
Sbjct: 277 EFQIVSSSHDDTILIW 292


>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal
           domain {Salmonella typhimurium [TaxId: 90371]}
          Length = 215

 Score = 23.8 bits (51), Expect = 6.0
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 46  DGLINMSQFDPMAAQNPKFIQVTPTLDRDMYNLLQCGMDTYLATEGSLVSLSTDI 100
           DGL   S F P   +  K       L++ + ++++        T G L  LST++
Sbjct: 82  DGLKEKSAFGPWLPETKKAEAKLENLEKQLLDIIKNN------TGGELSKLSTNL 130


>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
          acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 317

 Score = 23.9 bits (50), Expect = 6.5
 Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 9  QGPSRSVKTLEGS-VSNMLVTSCRDNICRLW 38
           G    V  +    V +++V++  D   ++W
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44


>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
           (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 311

 Score = 23.3 bits (48), Expect = 8.1
 Identities = 2/16 (12%), Positives = 7/16 (43%)

Query: 23  SNMLVTSCRDNICRLW 38
              + ++  D   ++W
Sbjct: 250 GTKIASASADKTIKIW 265


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0373    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 377,018
Number of extensions: 14094
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 22
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.8 bits)