BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17934
(584 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 354 bits (908), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 170/244 (69%), Positives = 203/244 (83%), Gaps = 1/244 (0%)
Query: 340 NPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLII 399
NPYLRLKVRRDHII+DALV LEMIAMEN DLKKQL VEFEGEQG+DEGGVSKEFFQL++
Sbjct: 3 NPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVV 62
Query: 400 EEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYK 459
EEIFNPD GMF T+ WFN SFE++ QFTL+GI+LGLAIYNN ILDV+FPMVVY+
Sbjct: 63 EEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYR 122
Query: 460 KLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKP 519
KLMGK+G+F DL D +PVL+ L+DLL+YEG ++ED TF+I TD FG + +DLK
Sbjct: 123 KLMGKKGTFRDLGDSHPVLYQSLKDLLEYEG-NVEDDMMITFQISQTDLFGNPMMYDLKE 181
Query: 520 DGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQL 579
+GD I +T EN++EF++LYSD++LN S+EKQFKAFRRGF MVT+ESPL LFRPEEIE L
Sbjct: 182 NGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELL 241
Query: 580 VCGS 583
+CGS
Sbjct: 242 ICGS 245
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 148/265 (55%), Gaps = 19/265 (7%)
Query: 326 RRISYLQSVVGQPTNPYL----RLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEG 381
R++ Y +S QP L +KVRR +I EDA E I + +DLKK+L+++F+G
Sbjct: 57 RKVIYFRS---QPALRILPGQCHIKVRRKNIFEDAYQE---IMRQTPEDLKKRLMIKFDG 110
Query: 382 EQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQS-DTQHMWFNQMSF---ESDAQFTLVGI 437
E+G+D GGVS+EFF L+ E+FNP Y +F + D + N S E F +G
Sbjct: 111 EEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSGINPEHLNYFKFIGR 170
Query: 438 ILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVF 497
++GL +++ LD F +YK ++ K+ D+E + ++N L +L+ ++ V
Sbjct: 171 VVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLE---NSIDGVL 227
Query: 498 SQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRG 557
TF + FG ++ DLKPDG NI VT NK+E+++LY+ + + +++QFKAF G
Sbjct: 228 DLTFS-ADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDG 286
Query: 558 FQMVTDESPLSLLFRPEEIEQLVCG 582
F + E L +F E+E L+ G
Sbjct: 287 FNELIPED-LVTVFDERELELLIGG 310
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
Anchoring The E2 To The Hect Domain
Length = 380
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 137/251 (54%), Gaps = 14/251 (5%)
Query: 337 QPTNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQ 396
QP + R++V R+ I E++ + KDL K+L ++F GE+G+D GGV++E+
Sbjct: 19 QPQAGHCRIEVSREEIFEESY---RQVXKXRPKDLWKRLXIKFRGEEGLDYGGVAREWLY 75
Query: 397 LIIEEIFNPDYGMFCVQSDTQH-MWFN---QMSFESDAQFTLVGIILGLAIYNNIILDVN 452
L+ E NP YG+F D + + N ++ E + F VG I G A+++ +D
Sbjct: 76 LLSHEXLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIXGXAVFHGHYIDGG 135
Query: 453 FPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFT-DPFGA 511
F + YK+L+GK + D E +P L N L +L+ D+ V TF C + +G
Sbjct: 136 FTLPFYKQLLGKSITLDDXELVDPDLHNSLVWILE---NDITGVLDHTF--CVEHNAYGE 190
Query: 512 FISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLF 571
I H+LKP+G +I V +ENK+E++ LY ++ IE QF A ++GF V + L F
Sbjct: 191 IIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLK-TF 249
Query: 572 RPEEIEQLVCG 582
+E+E ++CG
Sbjct: 250 DEKELELIICG 260
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 133/252 (52%), Gaps = 27/252 (10%)
Query: 343 LRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEI 402
+ + VRRDH+ ED+ EL + E ++K +L + FEGE+G D GG+ +E++ +I E+
Sbjct: 31 MAVHVRRDHVFEDSYRELHRKSPE---EMKNRLYIVFEGEEGQDAGGLLREWYMIISREM 87
Query: 403 FNPDYGMFCVQ---------SDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNF 453
FNP Y +F + + H N +S+ F VG I+ A+Y+N +L+ F
Sbjct: 88 FNPMYALFRTSPGDRVTYTINPSSHCNPNHLSY-----FKFVGRIVAKAVYDNRLLECYF 142
Query: 454 PMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFT---DPFG 510
YK ++GK + D+E + + GL LL+ DV + + + F+ FG
Sbjct: 143 TRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLE------NDVSTLGYDLTFSTEVQEFG 196
Query: 511 AFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLL 570
DLKP+G NI VT+ENK+E++ L + +I KQ AF GF + + +S +
Sbjct: 197 VCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLIS-I 255
Query: 571 FRPEEIEQLVCG 582
F +E+E L+ G
Sbjct: 256 FTEQELELLISG 267
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 133/252 (52%), Gaps = 27/252 (10%)
Query: 343 LRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEI 402
+ + VRRDH+ ED+ EL + E ++K +L + FEGE+G D GG+ +E++ +I E+
Sbjct: 48 MAVHVRRDHVFEDSYRELHRKSPE---EMKNRLYIVFEGEEGQDAGGLLREWYMIISREM 104
Query: 403 FNPDYGMFCVQ---------SDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNF 453
FNP Y +F + + H N +S+ F VG I+ A+Y+N +L+ F
Sbjct: 105 FNPMYALFRTSPGDRVTYTINPSSHANPNHLSY-----FKFVGRIVAKAVYDNRLLECYF 159
Query: 454 PMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFT---DPFG 510
YK ++GK + D+E + + GL LL+ DV + + + F+ FG
Sbjct: 160 TRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLE------NDVSTLGYDLTFSTEVQEFG 213
Query: 511 AFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLL 570
DLKP+G NI VT+ENK+E++ L + +I KQ AF GF + + +S +
Sbjct: 214 VAEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLIS-I 272
Query: 571 FRPEEIEQLVCG 582
F +E+E L+ G
Sbjct: 273 FTEQELELLISG 284
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 147/276 (53%), Gaps = 17/276 (6%)
Query: 314 LYYDSRIRMYSGRRISYLQSVVGQPTNP-YLRLKVRRDHIIEDALVELEMIAMENEKDLK 372
LY+ +R + + + Y + Q P ++++ V R + ED+ + I + +DL+
Sbjct: 14 LYFQGYVRDFKAK-VQYFRFWCQQLAMPQHIKITVTRKTLFEDSF---QQIMSFSPQDLR 69
Query: 373 KQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMF-CVQSDTQHMWFNQMSF---ES 428
++L V F GE+G+D GGV++E+F L+ E+ NP Y +F D + N S+ +
Sbjct: 70 RRLWVIFPGEEGLDYGGVAREWFFLLSHEVSNPMYCLFEYAGKDNYCLQINPASYINPDH 129
Query: 429 DAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLL-- 486
F +G + +A+++ +D F + YK+++ K DLE +P +N L +
Sbjct: 130 LKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEFYNSLIWVKEN 189
Query: 487 DYEGQDMEDVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTS 546
+ E D+E FS I G SHDLKP+G NI VT+ENK+E+I + +++ L+
Sbjct: 190 NIEECDLEMYFSVDKEI-----LGEIKSHDLKPNGGNILVTEENKEEYIRMVAEWRLSRG 244
Query: 547 IEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQLVCG 582
+E+Q +AF GF + + L F +E+E L+CG
Sbjct: 245 VEEQTQAFFEGFNEILPQQYLQ-YFDAKELEVLLCG 279
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 148/267 (55%), Gaps = 21/267 (7%)
Query: 326 RRISYLQSVVGQPTN--PYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQ 383
++ Y + + +P + +K+ R++I E++ + ++++ LK +L +EFE E+
Sbjct: 9 QKYDYFRKKLKKPADIPNRFEMKLHRNNIFEESYRRI--MSVKRPDVLKARLWIEFESEK 66
Query: 384 GIDEGGVSKEFFQLIIEEIFNPDYGMF-CVQSDTQHMWFNQMSFESD----AQFTLVGII 438
G+D GGV++E+F L+ +E+FNP YG+F +D + N S + + FT +G +
Sbjct: 67 GLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRV 126
Query: 439 LGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFS 498
GLA+++ +LD F YK ++GK+ + D+E + +N L+ +L+ + +++ +F
Sbjct: 127 AGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDPTELDLMF- 185
Query: 499 QTFRICFTDP-FGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRG 557
C + FG DLKP+G I VT ENK+E+IDL + ++KQ AF G
Sbjct: 186 -----CIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEG 240
Query: 558 FQMVTDESPLSL--LFRPEEIEQLVCG 582
F T+ P+ L +F E+E L+CG
Sbjct: 241 F---TELLPIDLIKIFDENELELLMCG 264
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 148/267 (55%), Gaps = 21/267 (7%)
Query: 326 RRISYLQSVVGQPTN--PYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQ 383
++ Y + + +P + +K+ R++I E++ + ++++ LK +L +EFE E+
Sbjct: 9 QKYDYFRKKLKKPADIPNRFEMKLHRNNIFEESYRRI--MSVKRPDVLKARLWIEFESEK 66
Query: 384 GIDEGGVSKEFFQLIIEEIFNPDYGMF-CVQSDTQHMWFNQMSFESD----AQFTLVGII 438
G+D GGV++E+F L+ +E+FNP YG+F +D + N S + + FT +G +
Sbjct: 67 GLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRV 126
Query: 439 LGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFS 498
GLA+++ +LD F YK ++GK+ + D+E + +N L+ +L+ + +++ +F
Sbjct: 127 AGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDPTELDLMF- 185
Query: 499 QTFRICFTDP-FGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRG 557
C + FG DLKP+G I VT ENK+E+IDL + ++KQ AF G
Sbjct: 186 -----CIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEG 240
Query: 558 FQMVTDESPLSL--LFRPEEIEQLVCG 582
F T+ P+ L +F E+E L+CG
Sbjct: 241 F---TELLPIDLIKIFDENELELLMCG 264
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 141/267 (52%), Gaps = 21/267 (7%)
Query: 326 RRISYLQSVVGQPTNPYLRL--KVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQ 383
++ Y + + +P + R K+ R++I E++ + + + LK +L +EFE E+
Sbjct: 24 QKYDYFRKKLKKPADIPNRFEXKLHRNNIFEESYRRIXSVKRPDV--LKARLWIEFESEK 81
Query: 384 GIDEGGVSKEFFQLIIEEIFNPDYGMF-CVQSDTQHMWFNQMSFESD----AQFTLVGII 438
G+D GGV++E+F L+ +E FNP YG+F +D + N S + + FT +G +
Sbjct: 82 GLDYGGVAREWFFLLSKEXFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRV 141
Query: 439 LGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFS 498
GLA+++ +LD F YK +GK+ + D E + +N L+ +L+ + +++ F
Sbjct: 142 AGLAVFHGKLLDGFFIRPFYKXXLGKQITLNDXESVDSEYYNSLKWILENDPTELDLXF- 200
Query: 499 QTFRICFTDP-FGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRG 557
C + FG DLKP+G I VT ENK+E+IDL + ++KQ AF G
Sbjct: 201 -----CIDEENFGQTYQVDLKPNGSEIXVTNENKREYIDLVIQWRFVNRVQKQXNAFLEG 255
Query: 558 FQMVTDESPLSL--LFRPEEIEQLVCG 582
F T+ P+ L +F E+E L CG
Sbjct: 256 F---TELLPIDLIKIFDENELELLXCG 279
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 134/243 (55%), Gaps = 13/243 (5%)
Query: 345 LKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFN 404
+K+RR ++ED+ + + ++ LK +L +EF+GE+G+D GGV++E+F LI +E+FN
Sbjct: 31 MKLRRATVLEDSYRRI--MGVKRADFLKARLWIEFDGEKGLDYGGVAREWFFLISKEMFN 88
Query: 405 PDYGMF-CVQSDTQHMWFNQMSFESD----AQFTLVGIILGLAIYNNIILDVNFPMVVYK 459
P YG+F +D + N S + + F +G + G+A+Y+ +LD F YK
Sbjct: 89 PYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYK 148
Query: 460 KLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKP 519
++ K + +D+E + +N LR +L+ + +++ F I + FG H+LK
Sbjct: 149 MMLHKPITLHDMESVDSEYYNSLRWILENDPTELDLRF-----IIDEELFGQTHQHELKN 203
Query: 520 DGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQL 579
G I VT +NK+E+I L + I+KQ AF+ GF + + L +F E+E L
Sbjct: 204 GGSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQD-LIKIFDENELELL 262
Query: 580 VCG 582
+CG
Sbjct: 263 MCG 265
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 133/253 (52%), Gaps = 27/253 (10%)
Query: 342 YLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEE 401
++++ V R + ED+ + I DL+++L V F GE+G+D GG+++E+F L+ E
Sbjct: 23 HVKINVSRQTLFEDSF---QQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHE 79
Query: 402 IFNPDYGMF--------CVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNF 453
+ NP Y +F C+Q + + ++ + + F +G + +A+++ +D F
Sbjct: 80 VLNPMYCLFEYAGKNNYCLQINPA----STINPDHLSYFCFIGRFIAMALFHGKFIDTGF 135
Query: 454 PMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLD--YEGQDMEDVFSQTFRICFTDPFGA 511
+ YK+++ K+ + DLE + +N L + D E +E FS I G
Sbjct: 136 SLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEI-----LGK 190
Query: 512 FISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLL- 570
SHDLK G NI VT+ENK E+I L +++ + +++Q KAF GF V PL L
Sbjct: 191 VTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVV---PLQWLQ 247
Query: 571 -FRPEEIEQLVCG 582
F +E+E ++CG
Sbjct: 248 YFDEKELEVMLCG 260
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 338 PTNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDE---GGVSKEF 394
P Y++ KVRR E +V E + +D + +++ EF+GE+ I + VS +
Sbjct: 245 PNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDE 304
Query: 395 FQLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFE 427
++ E +PD V S H F+ ++ E
Sbjct: 305 VIILPAEFVDPDNATGVVMSVPAHAPFDHVALE 337
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 32/162 (19%)
Query: 29 LSNGDLDTELT-LDIKSVRRAYEQLFALPSSE---------FEHTLVQALVTLSEYINVQ 78
+S+GDL + +T +DI + + F L + E FE TL +T +NV
Sbjct: 401 VSSGDLGSFVTPIDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTLKGETLT----VNVP 456
Query: 79 LRCGSSLLSTDSLINVFLVIFEIPSLGGCDYVERALPKICKAASQLPLTAQARIARIWAA 138
R + D +I E+ + G D + +LP + S Q
Sbjct: 457 SRRKDITIKED-------LIEEVARIYGYDEIPSSLPVFGEVTSGELTDRQ--------- 500
Query: 139 HCKQRLKTILEA--LQQLITIKTISNHYHKDYILQDEETITL 178
H + LK LE L Q IT +S + KD+ LQ+ TI+L
Sbjct: 501 HKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISL 542
>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 795
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 32/162 (19%)
Query: 29 LSNGDLDTELT-LDIKSVRRAYEQLFALPSSE---------FEHTLVQALVTLSEYINVQ 78
+S+GDL + +T +DI + + F L + E FE TL +T +NV
Sbjct: 397 VSSGDLGSFVTPIDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTLKGETLT----VNVP 452
Query: 79 LRCGSSLLSTDSLINVFLVIFEIPSLGGCDYVERALPKICKAASQLPLTAQARIARIWAA 138
R + D +I E+ + G D + +LP + S Q
Sbjct: 453 SRRKDITIKED-------LIEEVARIYGYDEIPSSLPVFGEVTSGELTDRQ--------- 496
Query: 139 HCKQRLKTILEA--LQQLITIKTISNHYHKDYILQDEETITL 178
H + LK LE L Q IT +S + KD+ LQ+ TI+L
Sbjct: 497 HKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISL 538
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 338 PTNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDE---GGVSKEF 394
P Y++ KVRR E +V E + +D + +++ EF+GE+ I + VS +
Sbjct: 245 PNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDE 304
Query: 395 FQLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFE 427
++ E +PD V S H F+ ++ E
Sbjct: 305 VIILPAEFVDPDNATGVVMSVPAHAPFDHVALE 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,176,463
Number of Sequences: 62578
Number of extensions: 719961
Number of successful extensions: 1652
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1615
Number of HSP's gapped (non-prelim): 17
length of query: 584
length of database: 14,973,337
effective HSP length: 104
effective length of query: 480
effective length of database: 8,465,225
effective search space: 4063308000
effective search space used: 4063308000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)