Query psy17934
Match_columns 584
No_of_seqs 307 out of 1361
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 18:04:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c4z_A E6AP, ubiquitin-protein 100.0 5.3E-61 1.8E-65 507.2 19.2 245 339-584 2-246 (358)
2 3h1d_A E3 ubiquitin-protein li 100.0 1.1E-57 3.7E-62 487.4 19.5 237 340-584 45-286 (405)
3 1nd7_A WW domain-containing pr 100.0 1.5E-56 5E-61 476.1 23.9 239 339-584 20-262 (374)
4 1zvd_A SMAD ubiquitination reg 100.0 2.1E-56 7.3E-61 475.5 23.5 238 339-584 21-262 (380)
5 3olm_A E3 ubiquitin-protein li 100.0 1.3E-56 4.4E-61 483.4 21.8 239 338-584 70-312 (429)
6 2oni_A E3 ubiquitin-protein li 100.0 7.2E-56 2.5E-60 472.9 22.1 264 298-584 13-281 (392)
7 3b09_A Peptidyl-prolyl CIS-tra 41.5 26 0.0009 28.7 4.2 63 516-580 13-81 (88)
8 1w8x_P Protein P16, protein S, 28.2 12 0.00042 30.4 0.0 25 6-30 55-79 (117)
9 1dip_A Delta-sleep-inducing pe 15.4 1.4E+02 0.0047 23.6 3.5 11 1-11 45-55 (78)
10 2qgu_A Probable signal peptide 8.4 1E+02 0.0036 29.1 0.9 36 123-158 73-108 (211)
No 1
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=100.00 E-value=5.3e-61 Score=507.17 Aligned_cols=245 Identities=69% Similarity=1.149 Sum_probs=234.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHHHHccCchhcccceEEEEecccccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCc
Q psy17934 339 TNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQH 418 (584)
Q Consensus 339 ~~p~l~l~VrR~~il~dal~~l~~~~~~~~~~lkk~L~V~F~GE~GiD~GGv~rEff~ll~~el~~p~~glF~~~~~~~~ 418 (584)
.+|+++|+|||+||++||+++++.++..++.++|++|+|+|.||+|+|+|||+||||+++++|+++|++|||+++++++.
T Consensus 2 ~~~~~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~~~ 81 (358)
T 1c4z_A 2 LNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKL 81 (358)
T ss_dssp -CCSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETTCCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTTTE
T ss_pred CCCeEEEEEcCCcHHHHHHHHHHHHhccCHHHhcCceEEEECCCcCcCCCccHHHHHHHHHHHHcCCcCCceeecCCCCe
Confidence 36899999999999999999998767778899999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHHhcCCccCcCCcHHHHHHHhCCCCccccccccChhhhhhHHHHhhccCCCcccccc
Q psy17934 419 MWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFS 498 (584)
Q Consensus 419 ~~fnp~s~~~~~~f~liG~l~GlAI~n~~~l~l~Fp~~~yK~Llg~~~tl~DL~~~dp~l~~sL~~Ll~~~~~dvee~~~ 498 (584)
+||||.+.++..+|+++|+++|+|||+|.+++++||++|||+|+|.+++++||+++||++|++|++|+++++ |++++++
T Consensus 82 ~~~np~s~~~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~-d~~~~l~ 160 (358)
T 1c4z_A 82 FWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEG-NVEDDMM 160 (358)
T ss_dssp EEECTTCCSCHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCS-CHHHHTC
T ss_pred EeeCCccccchHHHHhHHHHHHHHHHCCCCcCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCC-chhhhcc
Confidence 999999988888999999999999999999999999999999999999999999999999999999999987 8888899
Q ss_pred cceEEEeeCCCCceEEEecCCCCCccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhcCCCHHHHhh
Q psy17934 499 QTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQ 578 (584)
Q Consensus 499 l~F~~~~~d~~G~~~~~eL~p~G~~i~VT~~Nk~eyV~l~v~~~l~~~v~~q~~aF~~GF~~Vi~~~~L~~lF~p~ELe~ 578 (584)
++|++++.|.+|...++||+|||++++||.+||+|||++|++|+++++|++|++||++||++|||.++|..+|+|+||+.
T Consensus 161 ltF~~~~~~~~G~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~ 240 (358)
T 1c4z_A 161 ITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIEL 240 (358)
T ss_dssp CBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHH
T ss_pred ceEEEeccccCCCeeeeecCCCCcccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHH
Confidence 99999877899999999999999999999999999999999999999999999999999999999888855899999999
Q ss_pred ccccCC
Q psy17934 579 LVCGSN 584 (584)
Q Consensus 579 li~G~~ 584 (584)
+|||++
T Consensus 241 li~G~~ 246 (358)
T 1c4z_A 241 LICGSR 246 (358)
T ss_dssp HHHCBC
T ss_pred Hhhccc
Confidence 999974
No 2
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=100.00 E-value=1.1e-57 Score=487.36 Aligned_cols=237 Identities=33% Similarity=0.594 Sum_probs=217.2
Q ss_pred CCceEEEecCCccHHHHHHHHHHHHccCchhcccceEEEEecccccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCc-
Q psy17934 340 NPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQH- 418 (584)
Q Consensus 340 ~p~l~l~VrR~~il~dal~~l~~~~~~~~~~lkk~L~V~F~GE~GiD~GGv~rEff~ll~~el~~p~~glF~~~~~~~~- 418 (584)
.+.++|+|||++|++||+++| ...++.+||++|+|+|.||+|+|+||++||||+++++|+|+|+||||+++++++.
T Consensus 45 ~~~~~l~VrR~~i~eds~~~l---~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~ 121 (405)
T 3h1d_A 45 KEDMAVHVRRDHVFEDSYREL---HRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVT 121 (405)
T ss_dssp CCEEEEEECGGGHHHHHHHHH---TTSCTTGGGSEEEEEETTCCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSE
T ss_pred CCceEEEEeCchHHHHHHHHH---HccCHHHhhcceEEEECCCCCcCCChhHHHHHHHHHHHHhCCcccceeeccCCcee
Confidence 468999999999999999999 6677889999999999999999999999999999999999999999999886654
Q ss_pred ccccCCch---hhHHHHHHHHHHHHHHHhcCCccCcCCcHHHHHHHhCCCCccccccccChhhhhhHHHHhhccCCCccc
Q psy17934 419 MWFNQMSF---ESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMED 495 (584)
Q Consensus 419 ~~fnp~s~---~~~~~f~liG~l~GlAI~n~~~l~l~Fp~~~yK~Llg~~~tl~DL~~~dp~l~~sL~~Ll~~~~~dvee 495 (584)
+|+||.+. +...+|+|+|++||+|||||.++|++||++|||+|+|.+++++||+++||++|++|++|++++ +++
T Consensus 122 ~~~np~s~~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~---~~~ 198 (405)
T 3h1d_A 122 YTINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLEND---VST 198 (405)
T ss_dssp EEECCC-----CHHHHHHHHHHHHHHHHHHTCCCCCEECHHHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSC---GGG
T ss_pred EeeCCccccChhHHHHHHHHhHHHHHHHhCCCccCCCccHHHHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCC---hhh
Confidence 66899763 345789999999999999999999999999999999999999999999999999999999864 443
Q ss_pred -ccccceEEEeeCCCCceEEEecCCCCCccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhcCCCHH
Q psy17934 496 -VFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPE 574 (584)
Q Consensus 496 -~~~l~F~~~~~d~~G~~~~~eL~p~G~~i~VT~~Nk~eyV~l~v~~~l~~~v~~q~~aF~~GF~~Vi~~~~L~~lF~p~ 574 (584)
.+++||+++ .+.+|...++||+|||++|+||++||+|||++|++|+++++|+.|++||++||++|||.+.|. +|+|+
T Consensus 199 l~l~ltF~~~-~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~-lF~~~ 276 (405)
T 3h1d_A 199 LGYDLTFSTE-VQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLIS-IFTEQ 276 (405)
T ss_dssp SSSCEEEETT-TCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHT-TSCHH
T ss_pred hcceeEEEEE-eecCCceeeEeecCCCCCCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh-CCCHH
Confidence 367888876 367898888999999999999999999999999999999999999999999999999999986 99999
Q ss_pred HHhhccccCC
Q psy17934 575 EIEQLVCGSN 584 (584)
Q Consensus 575 ELe~li~G~~ 584 (584)
||+.+|||++
T Consensus 277 ELe~Li~G~~ 286 (405)
T 3h1d_A 277 ELELLISGLP 286 (405)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHhCCCC
Confidence 9999999974
No 3
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=100.00 E-value=1.5e-56 Score=476.08 Aligned_cols=239 Identities=29% Similarity=0.546 Sum_probs=221.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHHHHccCchhcccceEEEEecccccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCC-
Q psy17934 339 TNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQ- 417 (584)
Q Consensus 339 ~~p~l~l~VrR~~il~dal~~l~~~~~~~~~~lkk~L~V~F~GE~GiD~GGv~rEff~ll~~el~~p~~glF~~~~~~~- 417 (584)
..++++|+|||++|++|+++++ ...++.++|++|+|+|.||+|+|+|||+||||+++++|+++|++|||.++++++
T Consensus 20 ~~~~~~l~V~R~~i~~ds~~~l---~~~~~~~l~~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~~lF~~~~~~~~ 96 (374)
T 1nd7_A 20 LPSHVKINVSRQTLFEDSFQQI---MALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNY 96 (374)
T ss_dssp CSSEEEEEECTTTHHHHHHHHH---HTSCGGGGGSEEEEEETTTCCCCCTHHHHHHHHHHHHHHTCGGGSSEEESSSSSC
T ss_pred CCCCeEEEECCCCHHHHHHHHH---HhcCHHhccceEEEEECCCCCcCCCccHHHHHHHHHHHHcCCccccccccCCCCc
Confidence 4579999999999999999999 566778899999999999999999999999999999999999999999987554
Q ss_pred cccccCCch---hhHHHHHHHHHHHHHHHhcCCccCcCCcHHHHHHHhCCCCccccccccChhhhhhHHHHhhccCCCcc
Q psy17934 418 HMWFNQMSF---ESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDME 494 (584)
Q Consensus 418 ~~~fnp~s~---~~~~~f~liG~l~GlAI~n~~~l~l~Fp~~~yK~Llg~~~tl~DL~~~dp~l~~sL~~Ll~~~~~dve 494 (584)
.+|+||.+. +...+|+++|++||+|||+|.++|++||++|||+|+|.+++++||+++||++|++|++|++++.+++
T Consensus 97 ~~~~~p~s~~~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~~~~- 175 (374)
T 1nd7_A 97 CLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEEC- 175 (374)
T ss_dssp CEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHHHHHHHHHHSSCSCSS-
T ss_pred eeccCCcccCCHHHHHHHHHHHHHHHHHHhcCCeeCCcCCHHHHHHHhCCCCCHHHHHHhhHHHHHhhhhhccCChhhh-
Confidence 578999864 3457899999999999999999999999999999999999999999999999999999999765443
Q ss_pred cccccceEEEeeCCCCceEEEecCCCCCccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhcCCCHH
Q psy17934 495 DVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPE 574 (584)
Q Consensus 495 e~~~l~F~~~~~d~~G~~~~~eL~p~G~~i~VT~~Nk~eyV~l~v~~~l~~~v~~q~~aF~~GF~~Vi~~~~L~~lF~p~ 574 (584)
+++++|+++ .+.+|...++||+|||++++||.+||+|||++|++|+++++|+.|++||++||++|||.+.|. +|+|+
T Consensus 176 -~l~l~F~~~-~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~-~F~~~ 252 (374)
T 1nd7_A 176 -GLEMYFSVD-MEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQ-YFDEK 252 (374)
T ss_dssp -CCCCBSEEC-CCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGT-TCCHH
T ss_pred -hcceeEEEe-eccCCceeeEecCCCCcCceeccccHHHHHHHHHHHHHhccHHHHHHHHHHhhhhhCCHHHHh-cCCHH
Confidence 489999998 478999999999999999999999999999999999999999999999999999999999996 99999
Q ss_pred HHhhccccCC
Q psy17934 575 EIEQLVCGSN 584 (584)
Q Consensus 575 ELe~li~G~~ 584 (584)
||+.+|||++
T Consensus 253 ELe~li~G~~ 262 (374)
T 1nd7_A 253 ELEVMLCGMQ 262 (374)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHhcCCC
Confidence 9999999973
No 4
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-56 Score=475.50 Aligned_cols=238 Identities=35% Similarity=0.641 Sum_probs=222.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHHHHccCchhcccceEEEEecccccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCC-
Q psy17934 339 TNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQ- 417 (584)
Q Consensus 339 ~~p~l~l~VrR~~il~dal~~l~~~~~~~~~~lkk~L~V~F~GE~GiD~GGv~rEff~ll~~el~~p~~glF~~~~~~~- 417 (584)
..++++|+|||++|++|+++++ ...++.++|++|+|+|.||+|+|+|||+||||+++++|+++|++|||.++++++
T Consensus 21 ~~~~~~l~V~R~~i~~ds~~~l---~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~ 97 (380)
T 1zvd_A 21 QAGHCRIEVSREEIFEESYRQV---MKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIY 97 (380)
T ss_dssp SSCEEEEEECSTTHHHHHHHHH---HTSCGGGGGSEEEEEETTCCCSCHHHHHHHHHHHHHHHHTSGGGSSEEEETTEEE
T ss_pred CCCceEEEEccCCHHHHHHHHH---HccCHHHhcCceEEEECCCcCcCCCccHHHHHHHHHHHHcCCcCCCeeccCCCCe
Confidence 4578999999999999999999 566788999999999999999999999999999999999999999999987654
Q ss_pred cccccCCch---hhHHHHHHHHHHHHHHHhcCCccCcCCcHHHHHHHhCCCCccccccccChhhhhhHHHHhhccCCCcc
Q psy17934 418 HMWFNQMSF---ESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDME 494 (584)
Q Consensus 418 ~~~fnp~s~---~~~~~f~liG~l~GlAI~n~~~l~l~Fp~~~yK~Llg~~~tl~DL~~~dp~l~~sL~~Ll~~~~~dve 494 (584)
.+|+||.+. +...+|+++|++||+|||+|.+++++||++|||+|+|.+++++||+++||++|++|++|+++ |++
T Consensus 98 ~~~~np~s~~~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~ll~~---d~~ 174 (380)
T 1zvd_A 98 TLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILEN---DIT 174 (380)
T ss_dssp EEEECTTGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCSTTHHHHCHHHHHHHHHHHHS---CCT
T ss_pred eeccCchhhcChHHHHHHHHhHHHHHHHHhCCceeCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhC---Ccc
Confidence 457899864 34678999999999999999999999999999999999999999999999999999999984 667
Q ss_pred cccccceEEEeeCCCCceEEEecCCCCCccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhcCCCHH
Q psy17934 495 DVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPE 574 (584)
Q Consensus 495 e~~~l~F~~~~~d~~G~~~~~eL~p~G~~i~VT~~Nk~eyV~l~v~~~l~~~v~~q~~aF~~GF~~Vi~~~~L~~lF~p~ 574 (584)
++++++|+++. +.+|...++||+|||++++||++||+|||+++++|+++++|+.|++||++||++|||.+.|. +|+|+
T Consensus 175 ~~l~ltF~~~~-~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~-~F~~~ 252 (380)
T 1zvd_A 175 GVLDHTFCVEH-NAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLK-TFDEK 252 (380)
T ss_dssp TTSCCCSEEEE-EETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGGT-TCCHH
T ss_pred ccccceeEEee-ecCCcEeEEecCCCCCCCccccccHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHHh-CCCHH
Confidence 67999999984 78999999999999999999999999999999999999999999999999999999999996 99999
Q ss_pred HHhhccccCC
Q psy17934 575 EIEQLVCGSN 584 (584)
Q Consensus 575 ELe~li~G~~ 584 (584)
||+.+|||.+
T Consensus 253 ELe~li~G~~ 262 (380)
T 1zvd_A 253 ELELIICGLG 262 (380)
T ss_dssp HHHHHHHCBS
T ss_pred HHHHhhCCCC
Confidence 9999999974
No 5
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-56 Score=483.43 Aligned_cols=239 Identities=35% Similarity=0.620 Sum_probs=215.2
Q ss_pred CCCCceEEEecCCccHHHHHHHHHHHHccCchhcccceEEEEecccccCCCcchHHHHHHHHHHHcCCCCCCeeecCCC-
Q psy17934 338 PTNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDT- 416 (584)
Q Consensus 338 ~~~p~l~l~VrR~~il~dal~~l~~~~~~~~~~lkk~L~V~F~GE~GiD~GGv~rEff~ll~~el~~p~~glF~~~~~~- 416 (584)
...++++|+|||+||++|+++++ ...++.++|++|+|+|.||+|+|+|||+||||+++++|+|+|++|||++++++
T Consensus 70 ~~~~~~~l~VrR~~i~eds~~~l---~~~~~~~lk~~l~V~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~ 146 (429)
T 3olm_A 70 ILPGQCHIKVRRKNIFEDAYQEI---MRQTPEDLKKRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAYDN 146 (429)
T ss_dssp CCSSCEEEEEETTSHHHHHHHHH---HHSCHHHHTSCEEEEEETTC--------CHHHHHHHHHHTCGGGSSEEESSSSS
T ss_pred CCCCceEEEEecchhHHHHHHHH---HhcChHhcCcceEEEECCCCccCCChhHHHHHHHHHHHHcCccCCCceeeCCCC
Confidence 34568999999999999999999 55678899999999999999999999999999999999999999999998754
Q ss_pred CcccccCCch---hhHHHHHHHHHHHHHHHhcCCccCcCCcHHHHHHHhCCCCccccccccChhhhhhHHHHhhccCCCc
Q psy17934 417 QHMWFNQMSF---ESDAQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDM 493 (584)
Q Consensus 417 ~~~~fnp~s~---~~~~~f~liG~l~GlAI~n~~~l~l~Fp~~~yK~Llg~~~tl~DL~~~dp~l~~sL~~Ll~~~~~dv 493 (584)
..+|+||.+. +...+|+++|++||+|||+|.++|++||++|||+|+|.+++++||+++||++|++|++|++ +|+
T Consensus 147 ~~~~~np~s~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~~~~l~Dl~~~Dp~l~~sL~~ll~---~d~ 223 (429)
T 3olm_A 147 YTIQINPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLE---NSI 223 (429)
T ss_dssp CCEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTCCCCHHHHHHHCHHHHHHHHHHTT---SCC
T ss_pred eeEeeCCcccCCHHHHHHHHHHHHHHHHHHhcCCccCCCcCHHHHHhhcCCCCCHHHHHHHhHHHHHHHHHHHh---CCH
Confidence 4578999864 4567899999999999999999999999999999999999999999999999999999997 367
Q ss_pred ccccccceEEEeeCCCCceEEEecCCCCCccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhcCCCH
Q psy17934 494 EDVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRP 573 (584)
Q Consensus 494 ee~~~l~F~~~~~d~~G~~~~~eL~p~G~~i~VT~~Nk~eyV~l~v~~~l~~~v~~q~~aF~~GF~~Vi~~~~L~~lF~p 573 (584)
++.++++|+++ .+.+|...++||+|||++++||.+||+|||++|++|+++++|+.|++||++||++|||.+.|. +|+|
T Consensus 224 ~~~l~l~F~~~-~~~~g~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~-~F~~ 301 (429)
T 3olm_A 224 DGVLDLTFSAD-DERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVT-VFDE 301 (429)
T ss_dssp TTTCCCBSEEE-EEETTEEEEEESSTTGGGSBCCTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHT-TSCH
T ss_pred HHhhcCceEEE-eccCCceeeEeccCCCcccccCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCHHHHh-cCCH
Confidence 77899999998 478999999999999999999999999999999999999999999999999999999999886 9999
Q ss_pred HHHhhccccCC
Q psy17934 574 EEIEQLVCGSN 584 (584)
Q Consensus 574 ~ELe~li~G~~ 584 (584)
+||+.||||.+
T Consensus 302 ~ELe~Li~G~~ 312 (429)
T 3olm_A 302 RELELLIGGIA 312 (429)
T ss_dssp HHHHHHHTCBC
T ss_pred HHHHHHhcCCC
Confidence 99999999974
No 6
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=100.00 E-value=7.2e-56 Score=472.92 Aligned_cols=264 Identities=30% Similarity=0.502 Sum_probs=229.9
Q ss_pred eeccccccchhHHHHHhhHhHHHHHHHHHHHHHHHHhhCCCCCCceEEEecCCccHHHHHHHHHHHHccCchhcccceEE
Q psy17934 298 FMYYSFILTPATKTLGLYYDSRIRMYSGRRISYLQSVVGQPTNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVV 377 (584)
Q Consensus 298 ~~~~Pfll~~~~K~~~l~~d~~~~~~~~~~~~~~~s~~~~~~~p~l~l~VrR~~il~dal~~l~~~~~~~~~~lkk~L~V 377 (584)
.-..||..+...|..++...- .. .....++++|+|||++|++||++++.. ...+..+|++|+|
T Consensus 13 ~~~~p~~~~f~~k~~~f~~~l-------------~~--~~~~~~~~~l~V~R~~i~eds~~~l~~--~~~~~~lk~~l~V 75 (392)
T 2oni_A 13 NLYFQGSREFKQKYDYFRKKL-------------KK--PADIPNRFEMKLHRNNIFEESYRRIMS--VKRPDVLKARLWI 75 (392)
T ss_dssp -CCSTTHHHHHHHHHHHHHHC-------------CC--CSSSCSEEEEEECGGGHHHHHHHHHHH--CSCGGGGGSEEEE
T ss_pred ccCCCccccHHHHHHHHHHHH-------------hc--ccCCCCCEEEEEcCCchHHHHHHHHHc--cCcHHhhCccEEE
Confidence 345788888777765443110 00 112357899999999999999999943 2235578999999
Q ss_pred EEecccccCCCcchHHHHHHHHHHHcCCCCCCeeecCCC-CcccccCCch----hhHHHHHHHHHHHHHHHhcCCccCcC
Q psy17934 378 EFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDT-QHMWFNQMSF----ESDAQFTLVGIILGLAIYNNIILDVN 452 (584)
Q Consensus 378 ~F~GE~GiD~GGv~rEff~ll~~el~~p~~glF~~~~~~-~~~~fnp~s~----~~~~~f~liG~l~GlAI~n~~~l~l~ 452 (584)
+|.||+|+|+|||+||||+++++|+++|++|||.+++++ ..+|+||.+. +...+|+++|+++|+|||+|.++|++
T Consensus 76 ~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~~l~~f~flG~lig~Al~~~~~ld~~ 155 (392)
T 2oni_A 76 EFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGF 155 (392)
T ss_dssp EEC-CCSSCHHHHHHHHHHHHHHHHTCGGGSSEEESSTTCCCEEECTTHHHHCTTHHHHHHHHHHHHHHHHHHTCCCSSC
T ss_pred EECCCccccCCccHHHHHHHHHHHHcCcccCCceecCCCCceeccCCccccccHHHHHHHHhcchhhhhhhcCCcccCcc
Confidence 999999999999999999999999999999999998654 4568999863 34578999999999999999999999
Q ss_pred CcHHHHHHHhCCCCccccccccChhhhhhHHHHhhccCCCcccccccceEEEeeCCCCceEEEecCCCCCccccChhhHH
Q psy17934 453 FPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQ 532 (584)
Q Consensus 453 Fp~~~yK~Llg~~~tl~DL~~~dp~l~~sL~~Ll~~~~~dvee~~~l~F~~~~~d~~G~~~~~eL~p~G~~i~VT~~Nk~ 532 (584)
||++|||+|+|.+++++||+++||++|++|++|+++ |++ +++++|+++ .+.+|...++||+|||++++||++||+
T Consensus 156 f~~~f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~---d~~-~l~L~F~v~-~~~~G~~~~veL~p~G~~i~VT~~N~~ 230 (392)
T 2oni_A 156 FIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILEN---DPT-ELDLMFCID-EENFGQTYQVDLKPNGSEIMVTNENKR 230 (392)
T ss_dssp BCHHHHHHHTTCCCCTHHHHTTCHHHHHHHHHHHHS---CCG-GGCCBSEEE-EEETTEEEEEESSTTGGGCBCCTTTHH
T ss_pred chHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHhcC---Chh-HceeeEEEe-eecCCceeEEecCCCCccCccchhhHH
Confidence 999999999999999999999999999999999985 444 489999998 478999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhcCCCHHHHhhccccCC
Q psy17934 533 EFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQLVCGSN 584 (584)
Q Consensus 533 eyV~l~v~~~l~~~v~~q~~aF~~GF~~Vi~~~~L~~lF~p~ELe~li~G~~ 584 (584)
|||++|++|+++++|+.|++||++||++|||.+.|. +|+|+||+.+|||..
T Consensus 231 eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~-~F~~~ELe~licG~~ 281 (392)
T 2oni_A 231 EYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIK-IFDENELELLMCGLG 281 (392)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHSCHHHHT-TSCHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccHHhhh-cCCHHHHHHhhcCCC
Confidence 999999999999999999999999999999999996 999999999999973
No 7
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=41.55 E-value=26 Score=28.68 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=33.2
Q ss_pred ecCCCCCccccChhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhcCCchhhhcCCCHHHHhhcc
Q psy17934 516 DLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEK------QFKAFRRGFQMVTDESPLSLLFRPEEIEQLV 580 (584)
Q Consensus 516 eL~p~G~~i~VT~~Nk~eyV~l~v~~~l~~~v~~------q~~aF~~GF~~Vi~~~~L~~lF~p~ELe~li 580 (584)
-|+|.|+...++.++-++=+...+=+.+-++++. -.++|.+||...+..... .++++|++..+
T Consensus 13 ~~~~~~~~~~~~l~t~~~K~SYaIG~~mG~~L~~~g~~~lD~dav~~Gl~Dal~Gk~~--~ls~eei~~~l 81 (88)
T 3b09_A 13 GLVPRGSHMSDLFSTMEQHASYGVGRQMGEQLAANSFEGIDIPAVQAGLADAFAGKES--AVSMEELQVAF 81 (88)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHTTCCC--SSCHHHHHHHH
T ss_pred CCCcCCcccccccCCHHHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHcCCCC--CCCHHHHHHHH
Confidence 5889998777664444443443444444444432 367899999999887654 47899988765
No 8
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=28.21 E-value=12 Score=30.37 Aligned_cols=25 Identities=40% Similarity=0.656 Sum_probs=0.9
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCC
Q psy17934 6 LTQYTSPPPTLPSTEGSGDSPSSLS 30 (584)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (584)
...||||.||+|...||-.-+-.++
T Consensus 55 vagytspsptlpnrnrscgcnpavs 79 (117)
T 1w8x_P 55 VAGYTSPSPTLPNRNRSCGCNPAVS 79 (117)
T ss_dssp CC-----------------------
T ss_pred ecccCCCCCCCCCCCCCCCCCHHHH
Confidence 3469999999999988743333333
No 9
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=15.35 E-value=1.4e+02 Score=23.62 Aligned_cols=11 Identities=45% Similarity=0.830 Sum_probs=8.5
Q ss_pred CChhhccccCC
Q psy17934 1 MTPEQLTQYTS 11 (584)
Q Consensus 1 ~~~~~~~~~~~ 11 (584)
.+||||.|..+
T Consensus 45 aspEql~q~q~ 55 (78)
T 1dip_A 45 ASPEQLEKFQS 55 (78)
T ss_dssp TSSSCSCCCSS
T ss_pred CCHHHHHHHHh
Confidence 37899988765
No 10
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=8.42 E-value=1e+02 Score=29.05 Aligned_cols=36 Identities=17% Similarity=0.397 Sum_probs=30.1
Q ss_pred cCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q psy17934 123 QLPLTAQARIARIWAAHCKQRLKTILEALQQLITIK 158 (584)
Q Consensus 123 ~L~~~~~~~L~~wWs~l~~~~f~rlV~~~kq~It~~ 158 (584)
..+.-+..+|.+.|.++++++-.+.++.|++.+...
T Consensus 73 D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~t 108 (211)
T 2qgu_A 73 DFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRT 108 (211)
T ss_dssp CHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHH
Confidence 455567888999999999999999999999977433
Done!