RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17934
(584 letters)
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
subclass of Ubiquitin-protein ligase (E3). It binds
specific ubiquitin-conjugating enzymes (E2), accepts
ubiquitin from E2, transfers ubiquitin to substrate
lysine side chains, and transfers additional ubiquitin
molecules to the end of growing ubiquitin chains.
Length = 352
Score = 295 bits (757), Expect = 2e-95
Identities = 114/245 (46%), Positives = 154/245 (62%), Gaps = 10/245 (4%)
Query: 343 LRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLIIEEI 402
L++ VRRD I+EDAL +L ++ DLKK L VEF GE+GID GGV++EFF L+ +E+
Sbjct: 1 LKITVRRDRILEDALRQLSKVSS---SDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKEL 57
Query: 403 FNPDYGMFCVQSDTQH-MWFNQMSFESD---AQFTLVGIILGLAIYNNIILDVNFPMVVY 458
FNP YG+F D ++ N SF + F +G +LG A+Y +LD+ F Y
Sbjct: 58 FNPSYGLFRYTPDDSGLLYPNPSSFADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFY 117
Query: 459 KKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLK 518
KKL+GK S DLE+ +P L+ L++LLD +G ED TF I FG ++ +LK
Sbjct: 118 KKLLGKPLSLEDLEELDPELYKSLKELLDNDGD--EDDLELTFTIELDSSFGGAVTVELK 175
Query: 519 PDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQ 578
P G +I VT ENK+E++DLY D+ LN IE+Q +AFR GF V E LS LF PEE+E
Sbjct: 176 PGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLS-LFTPEELEL 234
Query: 579 LVCGS 583
L+CGS
Sbjct: 235 LICGS 239
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus
with. E3 ubiquitin-protein ligases. Can bind to E2
enzymes.
Length = 328
Score = 227 bits (581), Expect = 1e-69
Identities = 97/219 (44%), Positives = 137/219 (62%), Gaps = 8/219 (3%)
Query: 370 DLKKQ-LVVEFEGEQGIDEGGVSKEFFQLIIEEIFNPDYGMFCVQSDTQHMWFNQMSFES 428
DLKK+ L +EFEGE+G+D GGV++EFF L+ +E+FNPDYG+F + ++ N S +
Sbjct: 1 DLKKRVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPNDYLLYPNPRSGFA 60
Query: 429 D----AQFTLVGIILGLAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRD 484
+ + F +G +LG A+Y+N +LD+ F YKKL+GK + +DLE +P L+ L+
Sbjct: 61 NEEHLSYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKW 120
Query: 485 LLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLN 544
LL D + TF I T FG +LKP G NI VT+ENK+E++ L ++ LN
Sbjct: 121 LLLNN--DTSEELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYVHLVIEYRLN 178
Query: 545 TSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQLVCGS 583
IEKQ +AFR GF V E+ L LF PEE+E L+CGS
Sbjct: 179 KGIEKQLEAFREGFSEVIPENLLK-LFDPEELELLICGS 216
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 872
Score = 207 bits (529), Expect = 1e-57
Identities = 101/263 (38%), Positives = 150/263 (57%), Gaps = 11/263 (4%)
Query: 326 RRISYLQSVVGQPTNPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGI 385
R++ Y + +PYL +KVRRD + ED+ E+ E+ DLKK L +EF GE+GI
Sbjct: 498 RKLFYSLKQKAKIFDPYLHIKVRRDRVFEDSYREIMD---ESGDDLKKTLEIEFVGEEGI 554
Query: 386 DEGGVSKEFFQLIIEEIFNPDYGMFC-VQSDTQHMWFNQMSFESDAQ---FTLVGIILGL 441
D GG+++E+ L+ +E+FNPDYG+F + D + N +S + F +G ++G
Sbjct: 555 DAGGLTREWLFLLSKEMFNPDYGLFEYITEDLYTLPINPLSSINPEHLSYFKFLGRVIGK 614
Query: 442 AIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTF 501
AIY++ ILDV F YKKL+GK S DLE +P L+ L LL+ + E + TF
Sbjct: 615 AIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDID--ETILDLTF 672
Query: 502 RICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMV 561
+ D FG + +L P+G NI+VT ENK+E++ D+ LN +EKQF AF+ GF +
Sbjct: 673 TV-EDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEI 731
Query: 562 TDESPLSLLFRPEEIEQLVCGSN 584
L +F E+E L+ G
Sbjct: 732 IPPDLLQ-IFDESELELLIGGIP 753
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase). The name
HECT comes from Homologous to the E6-AP Carboxyl
Terminus.
Length = 298
Score = 185 bits (473), Expect = 2e-54
Identities = 84/193 (43%), Positives = 120/193 (62%), Gaps = 11/193 (5%)
Query: 396 QLIIEEIFNPDYGMF-CVQSDTQHMWFNQMSFESDA---QFTLVGIILGLAIYNNIILDV 451
L+ +E+FNPDYG+F V ++ +W N S ES A F +G ++G AIYN I+LD+
Sbjct: 1 TLLSKELFNPDYGLFFYVTPNSGLLWPNPGSPESSADEELFKFLGALIGKAIYNGILLDL 60
Query: 452 NFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGA 511
FP +KKL+GK + DLE+ +P L+ L+ LL+ +G D E+ + FT
Sbjct: 61 PFPPAFWKKLLGKPITLEDLEEVDPELYRSLKSLLELDG-DEEE-----LCLTFTVSGEG 114
Query: 512 FISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLF 571
+ +L P+G NI VT ENK+E+++LY D+ LN SI+KQ +AFR GF V + LS LF
Sbjct: 115 EGTIELIPNGSNIPVTNENKEEYVNLYVDYRLNESIKKQLEAFREGFYSVIPKELLS-LF 173
Query: 572 RPEEIEQLVCGSN 584
PEE+E L+CGS
Sbjct: 174 TPEELELLICGSP 186
>gnl|CDD|107342 cd06347, PBP1_ABC_ligand_binding_like_12, Type I periplasmic
ligand-binding domain of uncharacterized ABC (Atpase
Binding Cassette)-type active transport systems that are
predicted to be involved in uptake of amino acids,
peptides, or inorganic ions. This subgroup includes the
type I periplasmic ligand-binding domain of
uncharacterized ABC (Atpase Binding Cassette)-type
active transport systems that are predicted to be
involved in uptake of amino acids, peptides, or
inorganic ions. This subgroup has high sequence
similarity to members of the family of hydrophobic amino
acid transporters (HAAT), such as
leucine/isoleucine/valine binding protein (LIVBP);
however its ligand specificity has not been determined
experimentally.
Length = 334
Score = 32.1 bits (74), Expect = 0.64
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 501 FRICFTDPF-GA----FISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFR 555
FR+CF DPF G F + +LK AV +N + YS L + ++ FK
Sbjct: 112 FRVCFIDPFQGTVMAKFATENLK--AKKAAVLYDNSSD----YSKGLAK-AFKEAFKK-- 162
Query: 556 RGFQMVTDES 565
G ++V +E+
Sbjct: 163 LGGEIVAEET 172
>gnl|CDD|178297 PLN02694, PLN02694, serine O-acetyltransferase.
Length = 294
Score = 30.8 bits (69), Expect = 2.1
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 1 MTPEQLTQYTSPPPTLPSTEGSGDSPSSLSNGDLDTELTLDIKSVRRAYEQLFALPSSEF 60
M P ++ SPP T +T ++ L T++ + RR E AL S +
Sbjct: 1 MMPAGELRHPSPPKTNSATTADEEA------AWLWTQIKAE---ARRDAESEPALASYLY 51
Query: 61 EHTLVQALV--TLSEYINVQLRCGSSLLST---DSLINVF 95
L + + +LS ++ +L C S+LLST D +N F
Sbjct: 52 STILSHSSLERSLSFHLGNKL-CSSTLLSTLLYDLFLNTF 90
>gnl|CDD|220419 pfam09814, DUF2351, Uncharacterized conserved protein (DUF2351).
Members of this family of proteins have no known
function.
Length = 350
Score = 29.4 bits (66), Expect = 5.2
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 10/92 (10%)
Query: 498 SQTFRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRG 557
S + + G+ ++ L P +I ++ ++ I L ++ L++S G
Sbjct: 8 SASVIVSGPGEVGSSMAISLSPSRLSITISDDSVSTEIRLPAEVKLDSSSLSGLLISAGG 67
Query: 558 FQ----------MVTDESPLSLLFRPEEIEQL 579
D + P + L
Sbjct: 68 LSFRLSLNEKKGTDEDLRTSNDPDVPWSAKDL 99
>gnl|CDD|112329 pfam03506, Flu_C_NS1, Influenza C non-structural protein (NS1).
The influenza C virus genome consists of seven
single-stranded RNA segments. The shortest RNA segment
encodes a 286 amino acid non-structural protein NS1.
This protein contains 6 conserved cysteines that may be
functionally important, perhaps binding to a metal ion.
Length = 162
Score = 28.5 bits (63), Expect = 5.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 543 LNTSIEKQFKAFRRGFQMVTDESPLSLL 570
+ T I K F+ + GF M TDE L +L
Sbjct: 122 IETGIRKCFRCIKSGFVMATDEISLIIL 149
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 29.3 bits (66), Expect = 6.2
Identities = 27/193 (13%), Positives = 53/193 (27%), Gaps = 29/193 (15%)
Query: 183 MRILFYANILAGDLDPP-----CLRDE--------TQDPEDNHESMF--GVDISSSKSSV 227
M+ILF G ++P LR T ++ E+ V S +
Sbjct: 2 MKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAGLAFVAYPIRDSEL 61
Query: 228 QANHYEDSLAKLLQINVLDSRKPLIPFLEFYNEPLSDAIEMDRDFGYYRASEELTSETD- 286
+ + K + + +K + LE E ++ D
Sbjct: 62 ATEDGKFAGVKSFRRLLQQFKKLIRELLELLRE---LEPDLVVDDARLSLGLAARLLGIP 118
Query: 287 --CASSSRFLKFSFMYYSFILTPATKTLGLYYDSRIRMYSGRRISYLQSVVGQPTNPYLR 344
+ + + L P ++ + L + + +
Sbjct: 119 VVGINVAPYTPLPA--AGLPLPPVG------IAGKLPIPLYPLPPRLVRPLIFARSWLPK 170
Query: 345 LKVRRDHIIEDAL 357
L VRR+ +E L
Sbjct: 171 LVVRRNLGLELGL 183
>gnl|CDD|217606 pfam03543, Peptidase_C58, Yersinia/Haemophilus virulence surface
antigen.
Length = 203
Score = 28.2 bits (63), Expect = 9.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 403 FNPDYGMFCVQSDTQHMWFNQMSFESDA 430
F+P++G F S WF F+ A
Sbjct: 157 FDPNFGEFTFPSKESFSWFTADFFKKLA 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.396
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,398,224
Number of extensions: 3050382
Number of successful extensions: 2558
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2544
Number of HSP's successfully gapped: 15
Length of query: 584
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 482
Effective length of database: 6,413,494
Effective search space: 3091304108
Effective search space used: 3091304108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)