RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17934
         (584 letters)



>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score =  253 bits (646), Expect = 9e-80
 Identities = 170/245 (69%), Positives = 203/245 (82%), Gaps = 1/245 (0%)

Query: 340 NPYLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQGIDEGGVSKEFFQLII 399
           NPYLRLKVRRDHII+DALV LEMIAMEN  DLKKQL VEFEGEQG+DEGGVSKEFFQL++
Sbjct: 1   NPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVV 60

Query: 400 EEIFNPDYGMFCVQSDTQHMWFNQMSFESDAQFTLVGIILGLAIYNNIILDVNFPMVVYK 459
           EEIFNPD GMF     T+  WFN  SFE++ QFTL+GI+LGLAIYNN ILDV+FPMVVY+
Sbjct: 61  EEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYR 120

Query: 460 KLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQTFRICFTDPFGAFISHDLKP 519
           KLMGK+G+F DL D +PVL+  L+DLL+YEG ++ED    TF+I  TD FG  + +DLK 
Sbjct: 121 KLMGKKGTFRDLGDSHPVLYQSLKDLLEYEG-NVEDDMMITFQISQTDLFGNPMMYDLKE 179

Query: 520 DGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQMVTDESPLSLLFRPEEIEQL 579
           +GD I +T EN++EF++LYSD++LN S+EKQFKAFRRGF MVT+ESPL  LFRPEEIE L
Sbjct: 180 NGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELL 239

Query: 580 VCGSN 584
           +CGS 
Sbjct: 240 ICGSR 244


>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 374

 Score =  208 bits (531), Expect = 1e-62
 Identities = 72/264 (27%), Positives = 136/264 (51%), Gaps = 12/264 (4%)

Query: 326 RRISYLQSVVGQPTNP-YLRLKVRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQG 384
            ++++ + +      P ++++ V R  + ED+    + I      DL+++L V F GE+G
Sbjct: 6   WKLAHFRYLCQSNALPSHVKINVSRQTLFEDSF---QQIMALKPYDLRRRLYVIFRGEEG 62

Query: 385 IDEGGVSKEFFQLIIEEIFNPDYGMF-CVQSDTQHMWFNQMSFESD---AQFTLVGIILG 440
           +D GG+++E+F L+  E+ NP Y +F     +   +  N  S  +    + F  +G  + 
Sbjct: 63  LDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIA 122

Query: 441 LAIYNNIILDVNFPMVVYKKLMGKRGSFYDLEDFNPVLFNGLRDLLDYEGQDMEDVFSQT 500
           +A+++   +D  F +  YK+++ K+ +  DLE  +   +N L  + D    ++E+   + 
Sbjct: 123 MALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDN---NIEECGLEM 179

Query: 501 FRICFTDPFGAFISHDLKPDGDNIAVTQENKQEFIDLYSDFLLNTSIEKQFKAFRRGFQM 560
           +     +  G   SHDLK  G NI VT+ENK E+I L +++  +  +++Q KAF  GF  
Sbjct: 180 YFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNE 239

Query: 561 VTDESPLSLLFRPEEIEQLVCGSN 584
           V     L   F  +E+E ++CG  
Sbjct: 240 VVPLQWLQ-YFDEKELEVMLCGMQ 262


>d2aeba1 c.42.1.1 (A:5-313) Arginase {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 309

 Score = 29.4 bits (65), Expect = 1.1
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 86  LSTDSLINVFLVIFEIPSLGGCDYVERALPKICKAASQLPLTAQARIARIWAAHCKQR 143
           L+    + +   I++   L G D +E   P + K   ++  T    +A   A     R
Sbjct: 248 LTYREGLYITEEIYKTGLLSGLDIMEVN-PSLGKTPEEVTRTVNTAVAITLACFGLAR 304


>d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli
           [TaxId: 562]}
          Length = 69

 Score = 25.5 bits (56), Expect = 4.6
 Identities = 10/38 (26%), Positives = 14/38 (36%)

Query: 347 VRRDHIIEDALVELEMIAMENEKDLKKQLVVEFEGEQG 384
           +  D   +D  V    I  +  K L +   V F  E G
Sbjct: 20  ITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESG 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0474    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,193,859
Number of extensions: 106594
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 8
Length of query: 584
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 494
Effective length of database: 1,171,896
Effective search space: 578916624
Effective search space used: 578916624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.6 bits)