BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17938
(307 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P62909|RS3_RAT 40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=1 SV=1
Length = 243
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/108 (86%), Positives = 104/108 (96%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|P62908|RS3_MOUSE 40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1
Length = 243
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/108 (86%), Positives = 104/108 (96%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|E2RH47|RS3_CANFA 40S ribosomal protein S3 OS=Canis familiaris GN=RPS3 PE=1 SV=1
Length = 243
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/108 (86%), Positives = 104/108 (96%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|Q0Z8U2|RS3_PIG 40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1
Length = 243
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/108 (86%), Positives = 104/108 (96%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|P23396|RS3_HUMAN 40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2
Length = 243
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/108 (86%), Positives = 104/108 (96%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|Q3T169|RS3_BOVIN 40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1
Length = 243
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/108 (86%), Positives = 104/108 (96%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|P02350|RS31_XENLA 40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-a PE=2 SV=2
Length = 246
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/108 (86%), Positives = 104/108 (96%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|P79891|RS3_AMBME 40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1
Length = 253
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/108 (86%), Positives = 104/108 (96%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|Q5R465|RS3_PONAB 40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1
Length = 243
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 104/108 (96%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T+VVQKRF F +G++ELYAE+VATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TAVVQKRFGFPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|P47835|RS32_XENLA 40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-b PE=2 SV=1
Length = 246
Score = 194 bits (494), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 104/108 (96%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADG+F+AEL+EFLTRELAEDGYSGVE+R TP +TEIII+ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T+VVQKRF F +G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1
Length = 245
Score = 194 bits (494), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 103/108 (95%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFV+DG+F+AEL+EFLTRELAEDGYSGVE+R TP RTEIII+ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T+VVQKRF F G++ELYAEKVATRGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|P48153|RS3_MANSE 40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1
Length = 243
Score = 191 bits (485), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 101/108 (93%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFV DGVF+AEL+EFLTRELAEDGYSGVE+R TP R+EIIIMATRTQ+VLG+KGRRIREL
Sbjct: 11 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKGRRIREL 70
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
TSVVQKRF + ++ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR
Sbjct: 71 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 118
>sp|Q06559|RS3_DROME 40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1
SV=1
Length = 246
Score = 188 bits (478), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/108 (83%), Positives = 100/108 (92%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFV+DG+F+AEL+EFLTRELAEDGYSGVE+R TP+RTEIIIMAT+TQ VLG+KGRRIREL
Sbjct: 12 KFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIREL 71
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T++VQKRF F G IELYAEKVA RGLCAIAQAESLRYKL GGLAVRR
Sbjct: 72 TAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRR 119
>sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1
SV=1
Length = 248
Score = 187 bits (475), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 99/108 (91%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADGVF AEL+E LTRELAEDGYSGVE+R TP RTEIII ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
TS+VQKRFKF ++ELYAEKVA RGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|Q9SIP7|RS31_ARATH 40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=1
SV=1
Length = 250
Score = 184 bits (467), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 91/108 (84%), Positives = 98/108 (90%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADGVF AEL+E LTRELAEDGYSGVE+R TP RTEIII ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
TS+VQKRFKF ++ELYAEKV RGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|Q9M339|RS32_ARATH 40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1
SV=1
Length = 249
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/108 (84%), Positives = 98/108 (90%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADGVF AEL+E LTRELAEDGYSGVE+R TP RTEIII ATRTQNVLG+KGRRIREL
Sbjct: 10 KFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIREL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
TS+VQKRFKF ++ELYAEKV RGLCAIAQAESLRYKL+GGLAVRR
Sbjct: 70 TSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
>sp|P48152|RS3_CAEEL 40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=3
SV=1
Length = 247
Score = 177 bits (449), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 97/108 (89%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
K V G+F+AEL+ FL +ELAEDGYSGVE+R TPAR E+IIMATRTQNVLG++GRRI+EL
Sbjct: 12 KAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKEL 71
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
TSVVQKRF F +G++ELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRR
Sbjct: 72 TSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRR 119
>sp|O60128|RS3_SCHPO 40S ribosomal protein S3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rps3 PE=1 SV=1
Length = 249
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 96/108 (88%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFVADGVF AEL+EF TREL+E+GYSG E+R TP+R+EIII AT TQ+VLG+KGRRIREL
Sbjct: 12 KFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIREL 71
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T++VQKRFKFA+ +ELYAEKV RGLCA+AQ ESLRYKL+ GLAVRR
Sbjct: 72 TALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRR 119
>sp|P05750|RS3_YEAST 40S ribosomal protein S3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS3 PE=1 SV=5
Length = 240
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/108 (70%), Positives = 92/108 (85%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
K VADGVF AEL+EF TRELAE+GYSGVE+R TP +TE+II ATRTQ+VLG+ GRRI EL
Sbjct: 10 KLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINEL 69
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
T +VQKRFK+A G I LYAE+V RGL A+AQAES+++KL+ GLA+RR
Sbjct: 70 TLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRR 117
>sp|P90526|RS3_DICDI 40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=1
SV=1
Length = 218
Score = 137 bits (345), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/109 (61%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
Query: 4 KFVADGVFRAELDEFLTRELAED-GYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRE 62
KFVADGVF AEL+E TRE +D GYSGVE++ +P TEIII A++TQ V+G RRI+E
Sbjct: 12 KFVADGVFHAELNELFTREFNKDEGYSGVELKTSPGLTEIIIRASKTQAVVGPNARRIQE 71
Query: 63 LTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
L S+VQKRF F +G + L+AEK+ RGLCA+AQAESL+ KL+ GL VR+
Sbjct: 72 LCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRK 120
>sp|Q8SQM3|RS3_ENCCU 40S ribosomal protein S3 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPS3 PE=1 SV=1
Length = 228
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 64/108 (59%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
+F+ +G+ AEL EF + L +G+S +E+R +II+ + +G+K R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 64 TSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 111
+ +R + D ++E+ EKV +GLCA+ QA +R K++GG+ RR
Sbjct: 81 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRR 128
>sp|Q5JDH5|RS3_PYRKO 30S ribosomal protein S3 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rps3 PE=3 SV=1
Length = 209
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 5 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 64
F+ +GV +DEFL +EL GY G++I+ TP T++ I A V+G GRRIRELT
Sbjct: 7 FIKEGVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIRELT 66
Query: 65 SVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR--YPAIDA 117
+++K+F + IE+ E++ L A QA L L G+ RR Y AI A
Sbjct: 67 RILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRA 119
>sp|C5A280|RS3_THEGJ 30S ribosomal protein S3 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rps3 PE=3 SV=1
Length = 209
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Query: 5 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 64
F+ +GV +DE+L +EL GY G++I+ TP T++II A V+G GRRIRELT
Sbjct: 7 FIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIRELT 66
Query: 65 SVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR--YPAIDA 117
+++++F + IE+ E++ L A QA L L G+ RR Y AI A
Sbjct: 67 RILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRA 119
>sp|B6YSL9|RS3_THEON 30S ribosomal protein S3 OS=Thermococcus onnurineus (strain NA1)
GN=rps3 PE=3 SV=1
Length = 208
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 5 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 64
F+ +GV +DE+L +EL GY G++I+ TP T++II A V+G GRRIRELT
Sbjct: 7 FIKEGVREMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELT 66
Query: 65 SVVQKRFKFADGAIELYAEKVATRGLCAIAQA 96
+++++F + IE+ E++ L A QA
Sbjct: 67 RILERQFGLENPQIEV--EEIKNPYLNAKVQA 96
>sp|Q8U004|RS3_PYRFU 30S ribosomal protein S3 OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rps3 PE=1 SV=1
Length = 210
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 5 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 64
F+ + V +DEFL +EL GY G++I+ TP T++II A V+G GRRIRELT
Sbjct: 7 FIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELT 66
Query: 65 SVVQKRFKFADGAIELYAEKVATRGLCAIAQA 96
+++K+F + IE+ E++ L A QA
Sbjct: 67 RILEKQFGLENPQIEV--EEIKNPYLNAKVQA 96
>sp|C6A165|RS3_THESM 30S ribosomal protein S3 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=rps3 PE=3 SV=1
Length = 207
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 5 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 64
F+ +G+ +DE+L +EL GY G++I+ TP T+++I R V+G GR+IRELT
Sbjct: 7 FIKEGIKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGRKIRELT 66
Query: 65 SVVQKRFKFADGAIEL 80
++++RF + IE+
Sbjct: 67 RILERRFNLENPQIEV 82
>sp|Q3IMY2|RS3_NATPD 30S ribosomal protein S3 OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rps3 PE=3 SV=1
Length = 305
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 50/77 (64%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
+F+ DG+ R ++DEF + EL+ GY G+E+ TP T+I++ A + V+G G+ IR++
Sbjct: 6 QFIHDGLQRTQIDEFFSEELSRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKI 65
Query: 64 TSVVQKRFKFADGAIEL 80
T+ +++ F D +++
Sbjct: 66 TTTLEEEFGLEDPQVDV 82
>sp|O59424|RS3_PYRHO 30S ribosomal protein S3 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps3 PE=3 SV=1
Length = 210
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 7/120 (5%)
Query: 5 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 64
F+ + V +DEFL +EL GY G++I+ TP T++II A V+G GRRIRELT
Sbjct: 7 FIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELT 66
Query: 65 SVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYPAIDAQYCSLLA 124
+++++F + I++ +++ L A QA + L G+ RR A Y ++ A
Sbjct: 67 RILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRR-----AAYSAMRA 119
>sp|Q9V1U1|RS3_PYRAB 30S ribosomal protein S3 OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rps3 PE=3 SV=1
Length = 210
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 5 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 64
F+ + V +DEFL +EL GY G++I+ TP T++II A V+G GRRIRELT
Sbjct: 7 FIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELT 66
Query: 65 SVVQKRFKFADGAIEL 80
+++++F + I++
Sbjct: 67 RILERQFGLENPQIDV 82
>sp|P54034|RS3_METJA 30S ribosomal protein S3 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps3 PE=3 SV=1
Length = 208
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 14/117 (11%)
Query: 5 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 64
FV + V R +DE+ +EL++ GYS +IR TP T+III A + V+G +G RIRELT
Sbjct: 6 FVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIRELT 65
Query: 65 SVVQKRFKFADGAI--------ELYAEKVATRGLCAIAQA--ESLRYKLIGGLAVRR 111
+ K F I +L A+ VA + +AQ+ L ++ +G AVRR
Sbjct: 66 ETLAKEFGVEKPQIDVKPVENPDLDAQVVAQK----VAQSLERGLHFRRVGHTAVRR 118
>sp|P20281|RS3_HALMA 30S ribosomal protein S3 OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps3 PE=3
SV=2
Length = 304
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
+F+ DG+ R ++DEF EL GY G+++ TP T+I++ A + V+G G+ IR++
Sbjct: 6 QFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKI 65
Query: 64 TSVVQKRFKFADGAIEL 80
T+ ++ RF D +++
Sbjct: 66 TTELEDRFNLDDPQVDV 82
>sp|Q8TRU1|RS3_METAC 30S ribosomal protein S3 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=rps3 PE=3 SV=1
Length = 318
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 1 MSAKFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRI 60
+ KFV DG +A +DE+ +L+ GY G+E+ TP T+I+I + + V+G G+ I
Sbjct: 3 IEKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVI 62
Query: 61 RELTSVVQKRFKFADGAI--------ELYAEKVATRGLCAIAQA 96
R+LT V ++ + I EL A+ +A+R +I +
Sbjct: 63 RKLTRDVANKYSLENPQIDAQEVKRPELNAQMMASRLAASIERG 106
>sp|P15009|RS3_HALSA 30S ribosomal protein S3 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rps3 PE=3 SV=3
Length = 302
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
+F+ G+ R+++DEF ELA GY G+E+ TP +I++ A + V+G G+ IR++
Sbjct: 6 EFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGKNIRKI 65
Query: 64 TSVVQKRFKFADGAIEL 80
T+ +++RF D I++
Sbjct: 66 TTQLEERFDLEDPQIDV 82
>sp|Q46GA1|RS3_METBF 30S ribosomal protein S3 OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=rps3 PE=3 SV=1
Length = 311
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFV DG +A +DE+ +L GY G+E+ TP T+I+I + + V+G G+ IR+L
Sbjct: 6 KFVNDGFVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKL 65
Query: 64 TSVVQKRFKFADGAI--------ELYAEKVATRGLCAI 93
T V R+ + I EL A+ +A+R +I
Sbjct: 66 TRDVAARYNLENPQIDAQEVKKPELNAQMMASRLAASI 103
>sp|Q8PV44|RS3_METMA 30S ribosomal protein S3 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps3 PE=3 SV=1
Length = 307
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 1 MSAKFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRI 60
+ KFV DG +A +DE+ +L GY G+E+ TP T+III + + V+G G+ I
Sbjct: 3 IEKKFVNDGYVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIIIYSEKPGMVIGKAGKVI 62
Query: 61 RELTSVVQKRFKFADGAI--------ELYAEKVATRGLCAIAQA 96
R+LT V ++ + I EL A+ +A+R +I +
Sbjct: 63 RKLTRDVATKYNLENPQIDAQEVKKPELNAQMMASRLAASIERG 106
>sp|Q18GF5|RS3_HALWD 30S ribosomal protein S3 OS=Haloquadratum walsbyi (strain DSM
16790) GN=rps3 PE=3 SV=1
Length = 323
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
+F+ +G+ R+++DEF EL GY G+++ TP T+I++ A + V+G G+ IR++
Sbjct: 6 QFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKV 65
Query: 64 TSVVQKRFKFADGAIEL 80
T ++ RF D I++
Sbjct: 66 TRELEDRFNLDDPQIDV 82
>sp|A5UL83|RS3_METS3 30S ribosomal protein S3 OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rps3 PE=3 SV=1
Length = 250
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%)
Query: 5 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 64
FV +G+ R +DE+L +EL GY G++++ TP T +++ A R V+G G+ +R +T
Sbjct: 6 FVTEGLKRTRIDEYLEKELERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKNVRAIT 65
Query: 65 SVVQKRFKFADGAIEL 80
+ ++ F + IE+
Sbjct: 66 NTLKNDFGLDNPQIEV 81
>sp|A2SPK9|RS3_METLZ 30S ribosomal protein S3 OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rps3 PE=3 SV=1
Length = 231
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 1 MSAKFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRI 60
+ KFVADGV + ++++L +EL GY G++I TP T++ I A + V+G G+ +
Sbjct: 3 IEKKFVADGVRKVRVEQYLNKELKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGKLV 62
Query: 61 RELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESL 99
R+LT+ + + +E+ ++VA L A AE L
Sbjct: 63 RQLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERL 99
>sp|Q12ZU5|RS3_METBU 30S ribosomal protein S3 OS=Methanococcoides burtonii (strain DSM
6242) GN=rps3 PE=3 SV=1
Length = 304
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFV DG +A +DE+ ++L+ GY G++I TP T+I + A + V+G G+ IR+L
Sbjct: 6 KFVQDGYVKASMDEYFAKQLSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGKVIRKL 65
Query: 64 TSVVQKRFKFADGAI--------ELYAEKVATR 88
T V + + + I EL A+ +A+R
Sbjct: 66 TRDVDRLYDLDNPQIDAQEVKRPELNAQMMASR 98
>sp|A0B9W4|RS3_METTP 30S ribosomal protein S3 OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rps3 PE=3 SV=1
Length = 276
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFV +G +A +DE+L +EL GY G+ + TP T+I + A + V+G G+ IR+L
Sbjct: 6 KFVQEGFTKALVDEYLAKELDRAGYGGMVMNRTPMGTQITVYAEKPGMVIGKGGKLIRKL 65
Query: 64 TSVVQKRFKFADGAIEL 80
T +++RF+ + I++
Sbjct: 66 TRDLERRFRLDNPQIDV 82
>sp|O26116|RS3_METTH 30S ribosomal protein S3 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rps3 PE=3 SV=1
Length = 258
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 5 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 64
FV +G+ R +DE+L +EL GY G++++ TP T +++ A R V+G G+ +R +T
Sbjct: 6 FVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAIT 65
Query: 65 SVVQKRFKFADGAIEL 80
++ +F + +E+
Sbjct: 66 QKLKNKFDLENPQVEV 81
>sp|A3CT03|RS3_METMJ 30S ribosomal protein S3 OS=Methanoculleus marisnigri (strain
ATCC 35101 / DSM 1498 / JR1) GN=rps3 PE=3 SV=1
Length = 234
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 1 MSAKFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRI 60
+ KF+ DGV +++FLT+EL GY G++I TP T++ I A + V+G G+++
Sbjct: 3 IEKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQV 62
Query: 61 RELTSVVQKRFKFADGAIEL 80
R+LT + + +E+
Sbjct: 63 RQLTQDLATDYDIESPQVEV 82
>sp|Q0W1Y3|RS3_UNCMA 30S ribosomal protein S3 OS=Uncultured methanogenic archaeon RC-I
GN=rps3 PE=3 SV=1
Length = 279
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KFV +G +A +DE+ +L GY G+EI TP T+I + A + ++G G+ IR
Sbjct: 6 KFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRY 65
Query: 64 TSVVQKRFKFADGAI--------ELYAEKVATR 88
T + RFK + I EL A+ +ATR
Sbjct: 66 TKEMDMRFKMDNPQIDVQEVKKPELNAQMMATR 98
>sp|Q2NFW2|RS3_METST 30S ribosomal protein S3 OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rps3 PE=3 SV=1
Length = 252
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 1 MSAKFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRI 60
+ FV +G+ R +DE+L +L GY G++I+ TP T +I+ A + V+G G+ +
Sbjct: 2 IEKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTV 61
Query: 61 RELTSVVQKRFKFADGAIEL 80
R +T ++ F + +E+
Sbjct: 62 RAITKTLKNNFDLENPQVEV 81
>sp|Q6L1C1|RS3_PICTO 30S ribosomal protein S3 OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rps3
PE=3 SV=1
Length = 217
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
+FV D + R + E+L +E G+ G+E++ TP T I + R V+G G +I+E+
Sbjct: 5 RFVNDNIKRLLVSEYLRKENDNAGFGGMEMKRTPYGTNITLYVNRPGLVIGRHGTKIKEM 64
Query: 64 TSVVQKRFKFADGAIELYA-------EKVATRGLCAIAQAESLRYKLIGGLAVRRYPAID 116
T ++KRF IE+ ++A++ + A++ + Y+ G ++R+ ID
Sbjct: 65 TETLEKRFAIESPQIEVKEVNTPDLNPQIASKKI-ALSLEKGWNYRKAGNTSLRKM--ID 121
Query: 117 AQYCSLLAQFGWSI 130
+L + G I
Sbjct: 122 LNAPGVLIRIGGKI 135
>sp|A6UWU3|RS3_META3 30S ribosomal protein S3 OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=rps3 PE=3 SV=1
Length = 208
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 5 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 64
F+ + V +DE+L +L GYS ++++ TP T I + A + V+G KG+ ++ELT
Sbjct: 6 FIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVKELT 65
Query: 65 SVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYPAIDAQYCSLLA 124
+ ++ IE+ +++ + L A A+ + L G+ RR + ++A
Sbjct: 66 ETIATKYGVNKPQIEV--KQIESPDLDAGVVAQKIASSLERGMHFRR--VAHSAIRRVMA 121
Query: 125 QFGWSILILV 134
Q ++++V
Sbjct: 122 QGAKGVVVIV 131
>sp|A7I5P5|RS3_METB6 30S ribosomal protein S3 OS=Methanoregula boonei (strain 6A8)
GN=rps3 PE=3 SV=1
Length = 231
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 46/77 (59%)
Query: 4 KFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIREL 63
KF+A+G +A ++++LT+EL G+ G++I TP T++ I A + V+G G+ + +L
Sbjct: 6 KFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVHQL 65
Query: 64 TSVVQKRFKFADGAIEL 80
T + + + IE+
Sbjct: 66 TQDLAQNYGVESPQIEV 82
>sp|A6UQ49|RS3_METVS 30S ribosomal protein S3 OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rps3 PE=3 SV=1
Length = 211
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 5 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 64
F+A+ V +DE+ +L GYS +E++ TP T I + A + V+G KG+ ++ELT
Sbjct: 6 FIAENVSETLIDEYFKGKLVRAGYSHLELKKTPIGTRITVFAEKPGFVIGRKGKMVKELT 65
Query: 65 SVVQKRFKFADGAIEL 80
+ + +K + IE+
Sbjct: 66 DTLTEVYKVENPQIEV 81
>sp|A4FWB6|RS3_METM5 30S ribosomal protein S3 OS=Methanococcus maripaludis (strain C5
/ ATCC BAA-1333) GN=rps3 PE=3 SV=1
Length = 211
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 5 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 64
FV + V +DE+ +L GYS ++++ TP T I + A + V+G KG+ ++ELT
Sbjct: 6 FVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELT 65
Query: 65 SVVQKRFKFADGAIEL 80
+ K + + IE+
Sbjct: 66 ETLAKEYAVKNPQIEV 81
>sp|Q9UXA0|RS3_SULSO 30S ribosomal protein S3 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rps3 PE=3 SV=1
Length = 229
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 5 FVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELT 64
F+ + + ++DE+L ++ Y+GVE+ TP T +II A R ++G GR I++L
Sbjct: 8 FLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLA 67
Query: 65 SVVQKRFKFADGAIEL 80
+ +K F + I +
Sbjct: 68 QIFEKVFGLENPQITI 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,971,499
Number of Sequences: 539616
Number of extensions: 4044185
Number of successful extensions: 11670
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 11575
Number of HSP's gapped (non-prelim): 129
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)