Query psy17938
Match_columns 307
No_of_seqs 144 out of 986
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 18:10:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zkq_c 40S ribosomal protein S 100.0 3.2E-39 1.1E-43 297.4 9.2 141 2-155 8-160 (243)
2 3iz6_B 40S ribosomal protein S 100.0 1E-39 3.5E-44 298.2 5.5 138 2-151 8-157 (227)
3 3j20_C 30S ribosomal protein S 100.0 6.1E-39 2.1E-43 290.3 10.3 142 2-157 4-157 (210)
4 3u5c_D RP13, YS3, 40S ribosoma 100.0 1.2E-38 4E-43 293.0 12.1 138 2-151 8-157 (240)
5 2xzm_C KH domain containing pr 100.0 5E-38 1.7E-42 289.6 10.4 143 2-157 11-165 (243)
6 3r8n_C 30S ribosomal protein S 100.0 1.4E-36 4.9E-41 274.2 6.2 136 3-153 26-174 (206)
7 3i1m_C 30S ribosomal protein S 100.0 6.8E-36 2.3E-40 274.0 8.7 136 3-153 27-175 (233)
8 3bbn_C Ribosomal protein S3; s 100.0 1.1E-35 3.9E-40 270.2 6.1 140 3-154 27-187 (218)
9 2vqe_C 30S ribosomal protein S 100.0 5.7E-35 1.9E-39 268.8 9.5 137 3-154 27-176 (239)
10 1wh9_A 40S ribosomal protein S 99.9 1.6E-24 5.6E-29 173.3 8.3 87 7-93 4-90 (92)
11 2pt7_G HP1451, hypothetical pr 95.7 0.013 4.4E-07 50.4 5.5 71 12-82 4-78 (152)
12 3gku_A Probable RNA-binding pr 90.1 0.26 8.8E-06 44.8 4.3 111 13-123 64-194 (225)
13 1ec6_A RNA-binding protein NOV 83.0 1.1 3.7E-05 33.9 3.7 67 39-113 4-82 (87)
14 1ega_A Protein (GTP-binding pr 81.6 3.2 0.00011 37.7 7.0 70 9-83 196-278 (301)
15 3iev_A GTP-binding protein ERA 81.2 3.4 0.00012 37.6 7.1 74 8-84 202-290 (308)
16 1we8_A Tudor and KH domain con 75.3 1.9 6.6E-05 33.7 3.1 30 38-67 15-44 (104)
17 2opv_A KHSRP protein; KH domai 69.9 1.2 4.1E-05 33.6 0.6 29 39-67 15-43 (85)
18 2jvf_A De novo protein M7; tet 69.9 25 0.00084 27.1 8.0 74 31-123 10-84 (96)
19 1zzk_A Heterogeneous nuclear r 69.9 2.1 7.4E-05 31.9 2.1 28 39-66 8-35 (82)
20 1dtj_A RNA-binding neurooncolo 69.7 1.7 5.8E-05 31.7 1.4 28 39-66 4-31 (76)
21 2axy_A Poly(RC)-binding protei 68.9 1 3.4E-05 33.2 -0.0 29 38-66 5-33 (73)
22 1wf3_A GTP-binding protein; GT 68.6 6.4 0.00022 35.9 5.4 57 38-95 228-291 (301)
23 2hh2_A KH-type splicing regula 68.3 2.8 9.6E-05 33.1 2.5 28 39-66 8-35 (107)
24 1wvn_A Poly(RC)-binding protei 66.9 1.9 6.6E-05 32.1 1.2 28 39-66 7-34 (82)
25 1x4m_A FAR upstream element bi 65.7 1.7 5.9E-05 33.4 0.8 64 39-106 16-86 (94)
26 1x4n_A FAR upstream element bi 64.4 1.6 5.5E-05 33.5 0.4 30 37-66 14-43 (92)
27 2p2r_A Poly(RC)-binding protei 64.3 1.8 6.1E-05 31.8 0.6 28 39-66 6-33 (76)
28 2cpq_A FragIle X mental retard 64.1 0.73 2.5E-05 36.3 -1.7 67 40-113 17-88 (91)
29 2hh3_A KH-type splicing regula 64.0 6.7 0.00023 31.1 4.0 31 37-67 10-40 (106)
30 1vig_A Vigilin; RNA-binding pr 61.8 2.6 8.9E-05 30.8 1.1 28 39-66 6-33 (71)
31 3krm_A Insulin-like growth fac 60.6 2.6 9E-05 34.7 1.0 32 37-68 2-33 (163)
32 1j5k_A Heterogeneous nuclear r 59.3 2.5 8.4E-05 32.2 0.6 28 39-66 15-42 (89)
33 2cxc_A NUSA; transcription ter 57.4 4.8 0.00016 34.0 2.1 58 15-72 78-137 (144)
34 2dgr_A Ring finger and KH doma 54.9 2.7 9.3E-05 32.0 0.1 28 39-66 11-38 (83)
35 2cte_A Vigilin; K homology typ 51.6 3.9 0.00013 31.5 0.5 33 39-71 18-50 (94)
36 2ctl_A Vigilin; K homology typ 51.2 4.9 0.00017 31.2 1.1 31 38-68 17-47 (97)
37 2asb_A Transcription elongatio 50.1 18 0.0006 33.4 4.8 60 15-81 160-220 (251)
38 2ctk_A Vigilin; K homology typ 48.9 3.1 0.00011 32.8 -0.4 30 37-66 16-45 (104)
39 2cxc_A NUSA; transcription ter 47.5 10 0.00034 32.0 2.5 47 21-67 19-65 (144)
40 1hh2_P NUSA, N utilization sub 45.3 20 0.0007 34.2 4.6 60 15-81 279-339 (344)
41 3h90_A Ferrous-iron efflux pum 44.3 61 0.0021 28.9 7.4 74 9-84 205-279 (283)
42 2ycb_A Beta-CAsp RNAse, cleava 44.2 13 0.00044 37.5 3.2 55 13-72 7-62 (636)
43 2ctm_A Vigilin; K homology typ 44.0 6.4 0.00022 30.5 0.7 31 38-68 17-47 (95)
44 3af5_A Putative uncharacterize 43.5 14 0.00048 37.5 3.3 55 13-72 16-71 (651)
45 2anr_A Neuro-oncological ventr 43.5 6.1 0.00021 33.0 0.6 29 39-67 7-35 (178)
46 2jzx_A Poly(RC)-binding protei 41.5 5.4 0.00019 32.7 -0.1 30 38-67 5-34 (160)
47 2ycb_A Beta-CAsp RNAse, cleava 41.3 21 0.00073 35.9 4.3 74 13-99 74-148 (636)
48 3af5_A Putative uncharacterize 41.2 25 0.00086 35.6 4.8 51 13-65 83-134 (651)
49 2jvz_A KH type-splicing, FAR u 40.7 6.2 0.00021 32.2 0.2 27 40-66 4-30 (164)
50 2xr1_A Cleavage and polyadenyl 40.7 12 0.00041 37.9 2.3 54 13-71 11-65 (640)
51 2xr1_A Cleavage and polyadenyl 39.6 25 0.00085 35.6 4.4 51 13-65 78-129 (640)
52 2anr_A Neuro-oncological ventr 39.5 7.7 0.00026 32.4 0.6 29 38-66 104-132 (178)
53 3elg_A Uncharacterized peripla 39.0 37 0.0013 27.4 4.6 26 11-36 13-38 (128)
54 3krm_A Insulin-like growth fac 37.3 11 0.00036 31.0 1.1 29 39-67 86-114 (163)
55 1j4w_A FUSE binding protein; s 36.2 11 0.00039 31.3 1.1 28 39-66 105-132 (174)
56 1j4w_A FUSE binding protein; s 35.9 9.5 0.00032 31.8 0.6 29 39-67 4-32 (174)
57 1k0r_A NUSA; two component arr 35.5 39 0.0013 32.7 4.8 60 15-81 283-343 (366)
58 2jzx_A Poly(RC)-binding protei 34.5 9.3 0.00032 31.2 0.3 31 38-68 89-119 (160)
59 3byp_A CZRB protein; membrane 32.2 1.1E+02 0.0037 22.4 6.0 73 9-83 9-84 (94)
60 2jvz_A KH type-splicing, FAR u 31.7 9.5 0.00032 31.1 -0.1 27 40-66 93-119 (164)
61 2qnd_A FMR1 protein; KH domain 30.6 16 0.00053 30.1 1.1 27 40-66 69-95 (144)
62 2asb_A Transcription elongatio 30.1 58 0.002 29.9 4.9 62 13-80 83-153 (251)
63 4a3u_A NCR, NADH\:flavin oxido 28.3 25 0.00086 33.0 2.2 57 107-165 156-218 (358)
64 1k0r_A NUSA; two component arr 28.3 61 0.0021 31.3 4.9 62 13-80 206-276 (366)
65 1jo0_A Hypothetical protein HI 27.2 89 0.003 24.5 4.9 52 45-103 16-70 (98)
66 4gbu_A NADPH dehydrogenase 1; 25.9 28 0.00096 33.2 2.1 57 107-165 176-238 (400)
67 2fhd_A RAD9 homolog, DNA repai 24.8 20 0.0007 30.7 0.8 16 247-263 125-141 (153)
68 1rq8_A Conserved hypothetical 23.7 97 0.0033 24.6 4.5 52 45-103 15-69 (104)
69 3n89_A Defective in GERM LINE 23.4 11 0.00039 36.4 -1.2 21 49-69 41-63 (376)
70 2yqr_A KIAA0907 protein; struc 22.9 66 0.0023 26.0 3.4 49 50-105 31-98 (119)
71 2ctf_A Vigilin; K homology typ 22.7 23 0.00077 27.7 0.6 20 47-66 36-55 (102)
72 1ib8_A Conserved protein SP14. 22.7 3.3E+02 0.011 22.8 8.0 74 11-91 10-90 (164)
73 3c6v_A Probable tautomerase/de 21.7 93 0.0032 26.1 4.3 54 34-87 77-131 (161)
74 3tjl_A NADPH dehydrogenase; OL 20.7 57 0.002 31.6 3.1 80 97-178 160-247 (407)
No 1
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3.2e-39 Score=297.40 Aligned_cols=141 Identities=69% Similarity=1.025 Sum_probs=136.4
Q ss_pred cccchhhhhHHHHHHHHHHHhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEE
Q psy17938 2 SAKFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELY 81 (307)
Q Consensus 2 ~kkfI~d~~i~~kIRefl~k~l~~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~ 81 (307)
+++||+||+++.+|||||.+++.+||||+|||+|+++.++|+|||++||++||++|+++++|++.|+|.|+..+++++|+
T Consensus 8 ~rkfv~dgv~~~~IR~~l~k~l~~agis~IeIeRt~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~~~~v~I~ 87 (243)
T 2zkq_c 8 KRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELY 87 (243)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTCTTTEEEEECBEETTEECCEEEESCHHHHHCGGGHHHHHHHHHHHHHSCTTTCCCCCE
T ss_pred hhHHHhcChHHHHHHHHHHHHHHHCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchHHHHHHHHHHHHhCcCCceEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999998878899999
Q ss_pred EEEecCCCcCHHHHHHHHHHHHHcChhhhhhh--------hcCCceeEEeeeccceeeEEEeeeeee----ecCCCcccc
Q psy17938 82 AEKVATRGLCAIAQAESLRYKLIGGLAVRRYP--------AIDAQYCSLLAQFGWSILILVVAVGTL----HQCPGCREL 149 (307)
Q Consensus 82 I~eVknP~l~A~lLAe~IA~QLE~Rv~FRRAM--------kaGAkGIKI~~~~~~~~~~~~~~sgrl----ar~e~~~e~ 149 (307)
+.||++|++||+++|++||+|||+|++||||| ++||+||||+ +|||| ||+|.|+|+
T Consensus 88 i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRa~k~ai~~am~aGakGikI~------------iSGRL~GaiARtE~~~eG 155 (243)
T 2zkq_c 88 AEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVV------------VSGKLRGQRAKSMKFVDG 155 (243)
T ss_dssp EEECSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSSCSEEEEE------------ECSSGGGSSCCCBCCEEE
T ss_pred EEEecCcccCHHHHHHHHHHHHHcchhHHHHHHHHHHHHHhcCCceEEEE------------EecchhhHhhhhhhhcCc
Confidence 99999999999999999999999999999975 8999999999 99999 999999999
Q ss_pred eEeeeh
Q psy17938 150 RIILTF 155 (307)
Q Consensus 150 ~i~l~~ 155 (307)
+| |--
T Consensus 156 ~v-LhT 160 (243)
T 2zkq_c 156 LM-IHS 160 (243)
T ss_dssp SS-HHH
T ss_pred EE-eec
Confidence 99 644
No 2
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-39 Score=298.22 Aligned_cols=138 Identities=68% Similarity=1.000 Sum_probs=131.6
Q ss_pred cccchhhhhHHHHHHHHHHHhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEE
Q psy17938 2 SAKFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELY 81 (307)
Q Consensus 2 ~kkfI~d~~i~~kIRefl~k~l~~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~ 81 (307)
+++||+||+.+++|||||.+++.+||||+|||+|+++.++|+|||++||++||++|+++++|++.|+|+|+..+++++|+
T Consensus 8 ~rkfv~dg~~~a~Ire~l~k~l~~agis~IeI~R~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~l~k~~~~~~~~v~I~ 87 (227)
T 3iz6_B 8 KKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFLENGVELY 87 (227)
T ss_dssp ----CHHHHHHHHHHHHHHHHTSSCSSCCEECCEETTEECCEEECTTHHHHHCSSSSHHHHHHHHHHHHHCCCSCCCCCE
T ss_pred hhhhhhcCeehHHHHHHHHHHHHhCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCCCeEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999878899999
Q ss_pred EEEecCCCcCHHHHHHHHHHHHHcChhhhhhh--------hcCCceeEEeeeccceeeEEEeeeeee----ecCCCcccc
Q psy17938 82 AEKVATRGLCAIAQAESLRYKLIGGLAVRRYP--------AIDAQYCSLLAQFGWSILILVVAVGTL----HQCPGCREL 149 (307)
Q Consensus 82 I~eVknP~l~A~lLAe~IA~QLE~Rv~FRRAM--------kaGAkGIKI~~~~~~~~~~~~~~sgrl----ar~e~~~e~ 149 (307)
+.||++|++||.++|++||+|||+|++||||| ++||+||||+ +|||| ||+|.|.|+
T Consensus 88 i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRrA~k~ai~~~m~aGakGikI~------------iSGRL~GaiARtE~~~eG 155 (227)
T 3iz6_B 88 AEKVVNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVI------------VSGKLRAQRAKSMKFKDG 155 (227)
T ss_dssp EECCSSSTTSCSHHHHHHHTTTTTCCCHHHHHHHHHHTTTTTCCSEEECC------------BCSCGGGSSCCCBCCEEE
T ss_pred EEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCceEEEE------------EecccCCceeeEeeeeCC
Confidence 99999999999999999999999999999975 8999999999 99999 999999999
Q ss_pred eE
Q psy17938 150 RI 151 (307)
Q Consensus 150 ~i 151 (307)
++
T Consensus 156 ~v 157 (227)
T 3iz6_B 156 YM 157 (227)
T ss_dssp CC
T ss_pred ee
Confidence 99
No 3
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=6.1e-39 Score=290.35 Aligned_cols=142 Identities=30% Similarity=0.402 Sum_probs=135.1
Q ss_pred cccchhhhhHHHHHHHHHHHhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEE
Q psy17938 2 SAKFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELY 81 (307)
Q Consensus 2 ~kkfI~d~~i~~kIRefl~k~l~~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~ 81 (307)
+|+|++|++.|.+|||||.+++.+||||+|||+|+++.++|+|||++||++||++|+++++|++.|+|+++. ++++|+
T Consensus 4 ~k~fv~~~~~d~~Ir~~l~k~l~~agis~ieI~r~~~~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~--~~v~I~ 81 (210)
T 3j20_C 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGL--ENPQIE 81 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCSSCCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSC--SSCEEE
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHCCcceEEEEECCCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCC--CceEEE
Confidence 589999999999999999999999999999999999999999999999999999999999999999999985 457888
Q ss_pred EEEecCCCcCHHHHHHHHHHHHHcChhhhhhh--------hcCCceeEEeeeccceeeEEEeeeeee----ecCCCcccc
Q psy17938 82 AEKVATRGLCAIAQAESLRYKLIGGLAVRRYP--------AIDAQYCSLLAQFGWSILILVVAVGTL----HQCPGCREL 149 (307)
Q Consensus 82 I~eVknP~l~A~lLAe~IA~QLE~Rv~FRRAM--------kaGAkGIKI~~~~~~~~~~~~~~sgrl----ar~e~~~e~ 149 (307)
+.||++|++||+++|++||+|||+|++||||| ++||+||||+ +|||| ||+|.|.++
T Consensus 82 i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~GakGikI~------------iSGRL~GeiARtE~~~eG 149 (210)
T 3j20_C 82 VEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIR------------LSGKLTGERAKSIRFYQG 149 (210)
T ss_dssp EEECSCTTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSEEEEE------------EEECTTTTSCEEEEEEEE
T ss_pred EEEecCCccCHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCCceEEEE------------EecccCcceeeEEeeecc
Confidence 89999999999999999999999999999975 8999999999 99999 999999999
Q ss_pred eEeeehhH
Q psy17938 150 RIILTFLD 157 (307)
Q Consensus 150 ~i~l~~l~ 157 (307)
+|+|--|.
T Consensus 150 ~vpl~tl~ 157 (210)
T 3j20_C 150 YLAKVGNP 157 (210)
T ss_dssp CCCCSSSH
T ss_pred eeeccCCc
Confidence 99995443
No 4
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=100.00 E-value=1.2e-38 Score=292.96 Aligned_cols=138 Identities=58% Similarity=0.895 Sum_probs=134.9
Q ss_pred cccchhhhhHHHHHHHHHHHhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEE
Q psy17938 2 SAKFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELY 81 (307)
Q Consensus 2 ~kkfI~d~~i~~kIRefl~k~l~~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~ 81 (307)
+++|++||+.+++|||||.+++.+||||+|||+|+++.++|+||+++||++||++|+++++|++.|+|+|+..+++|+|+
T Consensus 8 ~~k~vadg~~~~~ire~l~k~l~~agis~IeI~Rt~~~i~I~I~t~rPg~VIGkkG~~I~~L~~~l~k~~~~~~~~v~I~ 87 (240)
T 3u5c_D 8 KRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELTLLVQKRFKYAPGTIVLY 87 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSSCEEEEEEESCHHHHHTTTTCTHHHHHHHHHHHHTCCTTSSEEE
T ss_pred cceEeecCchHHHHHHHHHHHHHhCCcceEEEEEcCCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCCCeEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEEecCCCcCHHHHHHHHHHHHHcChhhhhhh--------hcCCceeEEeeeccceeeEEEeeeeee----ecCCCcccc
Q psy17938 82 AEKVATRGLCAIAQAESLRYKLIGGLAVRRYP--------AIDAQYCSLLAQFGWSILILVVAVGTL----HQCPGCREL 149 (307)
Q Consensus 82 I~eVknP~l~A~lLAe~IA~QLE~Rv~FRRAM--------kaGAkGIKI~~~~~~~~~~~~~~sgrl----ar~e~~~e~ 149 (307)
+.||++|++||.++|++||+|||+|++||||| ++||+||||+ +|||| ||+|.|.|+
T Consensus 88 i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRA~k~ai~~am~aGakGikI~------------iSGRL~Ga~ARtE~~~eG 155 (240)
T 3u5c_D 88 AERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVV------------VSGKLRAARAKAMKFADG 155 (240)
T ss_dssp EECCSCGGGCHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHTTCSEEEEE------------EEECSSSSSCEEEEEEEE
T ss_pred EEEecCCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCceeEEE------------EecccCCceeeEEeeecC
Confidence 99999999999999999999999999999975 8999999999 99999 999999999
Q ss_pred eE
Q psy17938 150 RI 151 (307)
Q Consensus 150 ~i 151 (307)
++
T Consensus 156 ~v 157 (240)
T 3u5c_D 156 FL 157 (240)
T ss_dssp CC
T ss_pred ee
Confidence 98
No 5
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=100.00 E-value=5e-38 Score=289.56 Aligned_cols=143 Identities=40% Similarity=0.686 Sum_probs=137.2
Q ss_pred cccchhhhhHHHHHHHHHHHhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEE
Q psy17938 2 SAKFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELY 81 (307)
Q Consensus 2 ~kkfI~d~~i~~kIRefl~k~l~~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~ 81 (307)
.|+|++|++.+++|||||.+++.+||||+|||+|+++.++|+|||++||++||++|+++++|++.|++.++..+++++|+
T Consensus 11 ~kkfv~~~l~ed~Ir~~l~~~l~~agis~IeI~r~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~~~~v~I~ 90 (243)
T 2xzm_C 11 KKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKHKELTQFLQKRFGYSDDQIQIW 90 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSSCEEEECCEECSSCEEEEEEESCHHHHHCSSSHHHHHHHHHHHHHHCCTTTTSEEE
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHCCcceEEEEECCCeEEEEEEcCCCceEECCCchHHHHHHHHHHHHhCcCCceEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999998878899999
Q ss_pred EEEecCCCcCHHHHHHHHHHHHHcChhhhhhh--------hcCCceeEEeeeccceeeEEEeeeeee----ecCCCcccc
Q psy17938 82 AEKVATRGLCAIAQAESLRYKLIGGLAVRRYP--------AIDAQYCSLLAQFGWSILILVVAVGTL----HQCPGCREL 149 (307)
Q Consensus 82 I~eVknP~l~A~lLAe~IA~QLE~Rv~FRRAM--------kaGAkGIKI~~~~~~~~~~~~~~sgrl----ar~e~~~e~ 149 (307)
+.||++|++||.++|++||+|||+|++||||| ++||+||||+ +|||| ||+|.|.|+
T Consensus 91 i~eV~~p~l~A~lvAe~IA~qLe~Rv~FRRA~k~ai~~am~aGakGIkI~------------iSGRL~GaiARtE~~~eG 158 (243)
T 2xzm_C 91 AEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGAKGCEII------------ISGKLKQQRAKTMKFKQG 158 (243)
T ss_dssp EEECSCGGGCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCSEEEEE------------EEECTTSSSCEEEEEEEE
T ss_pred EEEecCcccCHHHHHHHHHHHHHccchHHHHHHHHHHHHHhcCCceEEEE------------EeCCccchhheeeeeeCC
Confidence 99999999999999999999999999999975 8999999999 99999 999999999
Q ss_pred eEeeehhH
Q psy17938 150 RIILTFLD 157 (307)
Q Consensus 150 ~i~l~~l~ 157 (307)
+| |--+.
T Consensus 159 ~v-L~T~r 165 (243)
T 2xzm_C 159 YM-ICTGQ 165 (243)
T ss_dssp CC-CCSSS
T ss_pred eE-eecCc
Confidence 99 74443
No 6
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=100.00 E-value=1.4e-36 Score=274.17 Aligned_cols=136 Identities=24% Similarity=0.259 Sum_probs=129.9
Q ss_pred ccchhhhhHHHHHHHHHHHhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEE
Q psy17938 3 AKFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYA 82 (307)
Q Consensus 3 kkfI~d~~i~~kIRefl~k~l~~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~I 82 (307)
+.|.+.-..|.+|||||.+++.+||||+|||+|+++.++|+|||++||++||++|+++++|++.|+|.++. +++|++
T Consensus 26 k~y~~~l~eD~~Ir~~l~k~l~~agis~ieI~r~~~~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~---~v~I~i 102 (206)
T 3r8n_C 26 KEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV---PAQINI 102 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTTEEEEECCCCSSSBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSS---CBCCBC
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHCC---ceEEEE
Confidence 46778889999999999999999999999999999999999999999999999999999999999999974 488889
Q ss_pred EEecCCCcCHHHHHHHHHHHHHcChhhhhhh--------hcCCceeEEeeeccceeeEEEeeeeee-----ecCCCcccc
Q psy17938 83 EKVATRGLCAIAQAESLRYKLIGGLAVRRYP--------AIDAQYCSLLAQFGWSILILVVAVGTL-----HQCPGCREL 149 (307)
Q Consensus 83 ~eVknP~l~A~lLAe~IA~QLE~Rv~FRRAM--------kaGAkGIKI~~~~~~~~~~~~~~sgrl-----ar~e~~~e~ 149 (307)
.||++|+++|.++|++||+|||+|+|||||| ++||+||||+ +|||| ||+|.|.|+
T Consensus 103 ~ev~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~gakGikI~------------iSGRL~Gae~AR~e~~~eG 170 (206)
T 3r8n_C 103 AEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVE------------VSGRLGGAEIARTEWYREG 170 (206)
T ss_dssp CBCSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCSEEEEE------------CCSSSTTCSSCCCCCCEES
T ss_pred EecCCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHHHhhcCCCceEEE------------EccccCCCcceeEEEEecc
Confidence 9999999999999999999999999999975 8999999999 99999 999999999
Q ss_pred eEee
Q psy17938 150 RIIL 153 (307)
Q Consensus 150 ~i~l 153 (307)
+|+|
T Consensus 171 ~vpl 174 (206)
T 3r8n_C 171 RVPL 174 (206)
T ss_dssp CCCT
T ss_pred eeec
Confidence 9987
No 7
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=100.00 E-value=6.8e-36 Score=274.00 Aligned_cols=136 Identities=24% Similarity=0.259 Sum_probs=129.9
Q ss_pred ccchhhhhHHHHHHHHHHHhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEE
Q psy17938 3 AKFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYA 82 (307)
Q Consensus 3 kkfI~d~~i~~kIRefl~k~l~~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~I 82 (307)
+.|.+.-..|.+|||||.+++.+||||+|||+|+++.++|+|||++||++||++|+++++|++.|++.++. +++|++
T Consensus 27 k~y~~~l~eD~kIr~~l~k~l~~agis~IeI~R~~~~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~---~v~I~i 103 (233)
T 3i1m_C 27 KEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV---PAQINI 103 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGTEEEEEBCCCSSCBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTS---CBCCEE
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHCC---ceEEEE
Confidence 46778888999999999999999999999999999999999999999999999999999999999999974 488999
Q ss_pred EEecCCCcCHHHHHHHHHHHHHcChhhhhhh--------hcCCceeEEeeeccceeeEEEeeeeee-----ecCCCcccc
Q psy17938 83 EKVATRGLCAIAQAESLRYKLIGGLAVRRYP--------AIDAQYCSLLAQFGWSILILVVAVGTL-----HQCPGCREL 149 (307)
Q Consensus 83 ~eVknP~l~A~lLAe~IA~QLE~Rv~FRRAM--------kaGAkGIKI~~~~~~~~~~~~~~sgrl-----ar~e~~~e~ 149 (307)
.||++|+++|.++|++||+|||+|++||||| ++||+||||+ +|||| ||+|.|.|+
T Consensus 104 ~eV~~p~l~A~lvAe~IA~qLe~rv~FRramk~ai~~am~aGakGikI~------------iSGRL~GaeiARtE~~~eG 171 (233)
T 3i1m_C 104 AEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVE------------VSGRLGGAEIARTEWYREG 171 (233)
T ss_dssp EECSSGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCSEEEEE------------EESSTTSCSSCCCCBCCEE
T ss_pred EeecCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHhhhhcCCceEEEE------------EccccCCCcceeEEEEecC
Confidence 9999999999999999999999999999975 8999999999 99999 999999999
Q ss_pred eEee
Q psy17938 150 RIIL 153 (307)
Q Consensus 150 ~i~l 153 (307)
+|+|
T Consensus 172 ~vPL 175 (233)
T 3i1m_C 172 RVPL 175 (233)
T ss_dssp CCCT
T ss_pred eeec
Confidence 9977
No 8
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.1e-35 Score=270.25 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=132.7
Q ss_pred ccchhhhhHHHHHHHHHHHhhcc-----C---CeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC
Q psy17938 3 AKFVADGVFRAELDEFLTRELAE-----D---GYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFA 74 (307)
Q Consensus 3 kkfI~d~~i~~kIRefl~k~l~~-----A---GIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~ 74 (307)
+.|.+.-..|.+||+||.+++.+ | |||+|||+|+++.++|+|||++||++||++|+++++|++.|++.++..
T Consensus 27 k~y~~~l~eD~~IR~~i~~~l~~~~~~~a~~~gis~ieI~r~~~~i~I~I~~~rPg~vIGk~g~~i~~L~~~l~k~~~~~ 106 (218)
T 3bbn_C 27 KNYAEGLQEDQKIRDCIKNYVQKNTKTSSGVEGIARIEIQKRIDLIQVIIHMGFPKLLIENRPQGVEDLKINVQKELNCV 106 (218)
T ss_dssp TSSHHHHHHHHHHHHHHHSCCSSSSCCTTTTTCEEEEEBCBSSSCBCCEEEESCTTTTSCSSSCTTHHHHHHHHHHSCSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccccccCccceEEEEEcCCeEEEEEEecCCCcEecCCcHHHHHHHHHHHHHhccC
Confidence 46777778999999999999998 9 999999999999999999999999999999999999999999999765
Q ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcChhhhhhh--------hcCCceeEEeeeccceeeEEEeeeeee-----e
Q psy17938 75 DGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRYP--------AIDAQYCSLLAQFGWSILILVVAVGTL-----H 141 (307)
Q Consensus 75 ~~kI~I~I~eVknP~l~A~lLAe~IA~QLE~Rv~FRRAM--------kaGAkGIKI~~~~~~~~~~~~~~sgrl-----a 141 (307)
+++++|++.||++|+++|.++|++||+|||+|++||||| ++||+||||+ +|||| |
T Consensus 107 ~~~v~i~i~ev~~p~l~A~lvAe~Ia~qLe~r~~fRra~k~ai~~~m~~gakGikI~------------iSGRL~Gae~A 174 (218)
T 3bbn_C 107 NRKLNIAITRIAKPYGDPNILAEFIAGQLKSRVSFRKAMKKAIELTEQADTKGIQIQ------------IAGRIDGKEIA 174 (218)
T ss_dssp CCCCCCCEEECSCTTTSHHHHHHHSTTTTTTTCCHHHHHTHHHHHHHTTCCSEEEEE------------CCSCCTTCSSC
T ss_pred CceEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhCCCeEEEE------------EccCcchhhhe
Confidence 678999999999999999999999999999999999975 7899999999 99999 9
Q ss_pred cCCCcccceEeee
Q psy17938 142 QCPGCRELRIILT 154 (307)
Q Consensus 142 r~e~~~e~~i~l~ 154 (307)
|+|.|+|++|+|-
T Consensus 175 R~e~~~eG~vpl~ 187 (218)
T 3bbn_C 175 RIEWIREGRVPLQ 187 (218)
T ss_dssp CCCEEEEECCCSS
T ss_pred eEEeEecccccCC
Confidence 9999999999993
No 9
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=100.00 E-value=5.7e-35 Score=268.83 Aligned_cols=137 Identities=20% Similarity=0.242 Sum_probs=130.8
Q ss_pred ccchhhhhHHHHHHHHHHHhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEE
Q psy17938 3 AKFVADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYA 82 (307)
Q Consensus 3 kkfI~d~~i~~kIRefl~k~l~~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~I 82 (307)
+.|.+.-..|.+|||||.+++.+||||+|||+|+++.++|+||+++||++||++|+++++|++.|++.++ .+++|++
T Consensus 27 k~y~~~l~eD~~IR~~l~k~l~~agis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~---~~v~I~i 103 (239)
T 2vqe_C 27 KQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTG---KNVALNV 103 (239)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTTTTCEEEECBCBSSSCBCCEEEESCGGGTSCSSSSHHHHHHHHHHHHST---TCCCCEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEECCCeEEEEEEeCCCcceecCCchHHHHHHHHHHHHhC---CeeEEEE
Confidence 5678888999999999999999999999999999999999999999999999999999999999999995 4788999
Q ss_pred EEecCCCcCHHHHHHHHHHHHHcChhhhhhh--------hcCCceeEEeeeccceeeEEEeeeeee-----ecCCCcccc
Q psy17938 83 EKVATRGLCAIAQAESLRYKLIGGLAVRRYP--------AIDAQYCSLLAQFGWSILILVVAVGTL-----HQCPGCREL 149 (307)
Q Consensus 83 ~eVknP~l~A~lLAe~IA~QLE~Rv~FRRAM--------kaGAkGIKI~~~~~~~~~~~~~~sgrl-----ar~e~~~e~ 149 (307)
.||++|++||.++|++||+|||+|++||||| ++||+||||+ +|||| ||+|.|+|+
T Consensus 104 ~eVk~p~l~A~lvAe~Ia~qLe~rv~FRra~k~ai~~am~~gakGIkI~------------iSGRL~GaeiARtE~~~eG 171 (239)
T 2vqe_C 104 QEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVI------------VSGRIGGAEQARTEWAAQG 171 (239)
T ss_dssp EECSCTTSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSSCSEEEEE------------ECSCTTTCSSCCCBCCEEE
T ss_pred EEecCCCcCHHHHHHHHHHHHHccchHHHHHHHHHHHHHHcCCCceEEE------------EcCCcchhhhhhhhhhhcC
Confidence 9999999999999999999999999999975 8999999999 99999 999999999
Q ss_pred eEeee
Q psy17938 150 RIILT 154 (307)
Q Consensus 150 ~i~l~ 154 (307)
+|+|-
T Consensus 172 ~vpL~ 176 (239)
T 2vqe_C 172 RVPLH 176 (239)
T ss_dssp CCCTT
T ss_pred ccccC
Confidence 99883
No 10
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=99.91 E-value=1.6e-24 Score=173.27 Aligned_cols=87 Identities=76% Similarity=1.116 Sum_probs=84.5
Q ss_pred hhhhHHHHHHHHHHHhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEEEec
Q psy17938 7 ADGVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAEKVA 86 (307)
Q Consensus 7 ~d~~i~~kIRefl~k~l~~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~I~eVk 86 (307)
+||+++++||+||.+++.+||||+|||+|+++.++|+|||++||++||++|+++++|+..|+|+++..+++|+|+++||+
T Consensus 4 ~~gv~~~~IR~~i~k~l~~aGis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I~I~eV~ 83 (92)
T 1wh9_A 4 GSSGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVA 83 (92)
T ss_dssp SSCSHHHHHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECC
T ss_pred hhhhHHHHHHHHHHHHHHHCceeeEEEEECCCeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEEEEEEec
Confidence 68999999999999999999999999999999999999999999999999999999999999999887899999999999
Q ss_pred CCCcCHH
Q psy17938 87 TRGLCAI 93 (307)
Q Consensus 87 nP~l~A~ 93 (307)
+|++||+
T Consensus 84 ~P~ldA~ 90 (92)
T 1wh9_A 84 TRGSGPS 90 (92)
T ss_dssp CSCCCSC
T ss_pred CCCcCCC
Confidence 9999985
No 11
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=95.73 E-value=0.013 Score=50.38 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhccCCee--eeEE-EEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC-CCeEEEEE
Q psy17938 12 RAELDEFLTRELAEDGYS--GVEI-RFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFA-DGAIELYA 82 (307)
Q Consensus 12 ~~kIRefl~k~l~~AGIs--~IeI-~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~-~~kI~I~I 82 (307)
-.++++||.+-+...|+. .+++ ....+.+.|.|.....|++||++|+.++.|+-.+....+-. +..|.|++
T Consensus 4 ~~~~~~~L~~il~~m~~~~~~i~v~~~~~~~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~~~~~~V~LDv 78 (152)
T 2pt7_G 4 LHEIKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPTYGYSIRLEI 78 (152)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEEecCCEEEEEEecCCcceEECCCCcchHHHHHHHHHHhhhcCCceEEEEh
Confidence 356889999999999985 4777 45678899999999999999999999999998887665421 23555654
No 12
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=90.09 E-value=0.26 Score=44.83 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhccCCee-eeEEEEc--CCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC---CCeEEEEEEEec
Q psy17938 13 AELDEFLTRELAEDGYS-GVEIRFT--PARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFA---DGAIELYAEKVA 86 (307)
Q Consensus 13 ~kIRefl~k~l~~AGIs-~IeI~Rt--~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~---~~kI~I~I~eVk 86 (307)
.+..+||..-+...|+. .|++.-. .+.+.|.|....+|.+||++|+.++.|+..+...++.. ...|.|++..-.
T Consensus 64 ~~a~~~L~~ll~~m~~~~~i~~~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~~~~rv~LDi~~YR 143 (225)
T 3gku_A 64 DKAIEFLEQVFDAMNMAVDISVEYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSSDYIRVKLDTENYR 143 (225)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCSSCCEEEEESTTHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCCCceEEEEecchHH
Confidence 46789999999988885 3566432 47899999999999999999999999998888776432 135555543221
Q ss_pred CC-CcCHHHHHHHHHHHHHc-C--------hhh-hhhh---hcCCceeEEe
Q psy17938 87 TR-GLCAIAQAESLRYKLIG-G--------LAV-RRYP---AIDAQYCSLL 123 (307)
Q Consensus 87 nP-~l~A~lLAe~IA~QLE~-R--------v~F-RRAM---kaGAkGIKI~ 123 (307)
.. .-.=.-+|+.+|++..+ + .|| ||.+ =+..+|+.+.
T Consensus 144 ~rR~e~L~~lA~~~A~kV~~tg~~v~L~PM~~~ERriIH~al~~~~~V~T~ 194 (225)
T 3gku_A 144 ERRKETLETLAKNIAYKVKRTKRSVSLEPMNPYERRIIHAALQNDKYVVTR 194 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCEECCCCCHHHHHHHHHHTTTCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEccCCCHHHHHHHHHHHccCCCcEEE
Confidence 11 11223456666665533 2 233 3332 2356889888
No 13
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=83.02 E-value=1.1 Score=33.94 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=45.0
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEE------------EEEecCCCcCHHHHHHHHHHHHHcC
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELY------------AEKVATRGLCAIAQAESLRYKLIGG 106 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~------------I~eVknP~l~A~lLAe~IA~QLE~R 106 (307)
.+++.|-...-|.+||++|+.|++|++. .+. +|+|. ...|.-+ .++.-.|..+...+-+.
T Consensus 4 t~~i~IP~~~vG~IIGkgG~~Ik~I~~~----tga---~I~I~~~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 4 LVEIAVPENLVGAILGKGGKTLVEYQEL----TGA---RIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTY 75 (87)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHH----HCC---EEEECCTTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCcHhHHHHHHH----hCC---EEEEccCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhc
Confidence 4567778888899999999999887764 432 22221 1222222 35777888888777777
Q ss_pred hhhhhhh
Q psy17938 107 LAVRRYP 113 (307)
Q Consensus 107 v~FRRAM 113 (307)
...||+-
T Consensus 76 ~~~~r~~ 82 (87)
T 1ec6_A 76 EQGVRAS 82 (87)
T ss_dssp HHHHHHH
T ss_pred ccccccc
Confidence 7777764
No 14
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=81.57 E-value=3.2 Score=37.74 Aligned_cols=70 Identities=27% Similarity=0.358 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHhhccCCeeeeEEEEc------CCeEEEEEEecccc---eeeccCcccHHHH----HHHHHHHhCCCC
Q psy17938 9 GVFRAELDEFLTRELAEDGYSGVEIRFT------PARTEIIIMATRTQ---NVLGDKGRRIREL----TSVVQKRFKFAD 75 (307)
Q Consensus 9 ~~i~~kIRefl~k~l~~AGIs~IeI~Rt------~~~I~I~I~tarPg---~IIGr~G~~IkkL----~~~LqK~~~~~~ 75 (307)
..++.++-+.+..+++-+ ..++|+.. ...+..+|++.+.+ ++||++|+.++++ +.+|++.++.
T Consensus 196 e~~re~l~~~l~~e~p~~--~~v~i~~~~~~~~~~~~i~~~i~v~~~~~k~i~ig~~G~~~k~ig~~ar~~i~~~~~~-- 271 (301)
T 1ega_A 196 EIIREKLMRFLGAELPYS--VTVEIERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEA-- 271 (301)
T ss_dssp HHHHHHHHHHHGGGCCTT--EEEEEEEEECCSSCSEEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHhCCCCCeE--EEEEEEEEEecCCCeEEEEEEEEEEECCceEEEECCCcHHHHHHHHHHHHHHHHHHCC--
Confidence 344555556665555444 45677632 23577888886654 6999999999776 4677778853
Q ss_pred CeEEEEEE
Q psy17938 76 GAIELYAE 83 (307)
Q Consensus 76 ~kI~I~I~ 83 (307)
+|.+++.
T Consensus 272 -~v~l~l~ 278 (301)
T 1ega_A 272 -PVHLELW 278 (301)
T ss_dssp -CEEEEEE
T ss_pred -CeEEEEE
Confidence 4544433
No 15
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=81.22 E-value=3.4 Score=37.58 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHHHhhccCCeeeeEEE---EcC-----CeEEEEEEecccc---eeeccCcccHHHH----HHHHHHHhC
Q psy17938 8 DGVFRAELDEFLTRELAEDGYSGVEIR---FTP-----ARTEIIIMATRTQ---NVLGDKGRRIREL----TSVVQKRFK 72 (307)
Q Consensus 8 d~~i~~kIRefl~k~l~~AGIs~IeI~---Rt~-----~~I~I~I~tarPg---~IIGr~G~~IkkL----~~~LqK~~~ 72 (307)
..++++++-+.+..++..+ + .++|+ ... ..|.-+|++.|++ ++||++|+.|+++ +.+|++.|+
T Consensus 202 ~e~irek~~~~~~~eiP~~-~-~v~i~~~~~~~~~~~~~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~ 279 (308)
T 3iev_A 202 AEIVREKAMMLTREEVPTS-I-AVKINEIKPGDANPNMLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILG 279 (308)
T ss_dssp HHHHHHHHHHTCCTTHHHH-C-EEEEEEEEECSSCTTSEEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhcCCe-e-EEEeEEEEEccCCCCeEEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhC
Confidence 3445555555555555543 2 24443 222 3688889998886 6999999999776 557788886
Q ss_pred CCCCeEEEEEEE
Q psy17938 73 FADGAIELYAEK 84 (307)
Q Consensus 73 ~~~~kI~I~I~e 84 (307)
. +..+++.|..
T Consensus 280 ~-~v~l~l~vkv 290 (308)
T 3iev_A 280 R-PVYLELWVKV 290 (308)
T ss_dssp S-CEEEEEEEEE
T ss_pred C-ceEEEEEEEE
Confidence 3 3344555443
No 16
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=75.29 E-value=1.9 Score=33.74 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=24.9
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHHH
Q psy17938 38 ARTEIIIMATRTQNVLGDKGRRIRELTSVV 67 (307)
Q Consensus 38 ~~I~I~I~tarPg~IIGr~G~~IkkL~~~L 67 (307)
...+|.|...+-|.|||++|+.|++|++.-
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~t 44 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKAS 44 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHH
Confidence 356778888999999999999998887753
No 17
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=69.93 E-value=1.2 Score=33.59 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=24.0
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHH
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSVV 67 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~L 67 (307)
..+|.|...+-|.+||++|+.|++|++.-
T Consensus 15 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~t 43 (85)
T 2opv_A 15 VQEIMIPAGKAGLVIGKGGETIKQLQERA 43 (85)
T ss_dssp EEEEEECTTTHHHHHTTTTHHHHHHHHHH
T ss_pred EEEEEeChhheeeeECCCCHHHHHHHHHH
Confidence 45677788899999999999999887753
No 18
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=69.93 E-value=25 Score=27.13 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=45.6
Q ss_pred eEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhC-CCCCeEEEEEEEecCCCcCHHHHHHHHHHHHHcChhh
Q psy17938 31 VEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFK-FADGAIELYAEKVATRGLCAIAQAESLRYKLIGGLAV 109 (307)
Q Consensus 31 IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~-~~~~kI~I~I~eVknP~l~A~lLAe~IA~QLE~Rv~F 109 (307)
|.|+|....|+|.|.+.- |++++.--..|+|.+. -..++++|.+ -.+-+-.|.-+-+.||.-|.
T Consensus 10 ikiqrdgqeieidirvst--------gkeleralqelekalaragarnvqiti--saendeqakelleliarllq----- 74 (96)
T 2jvf_A 10 IKIQRDGQEIEIDIRVST--------GKELERALQELEKALARAGARNVQITI--SAENDEQAKELLELIARLLQ----- 74 (96)
T ss_dssp EEEEETTEEEEEEEECCS--------SSHHHHHHHHHHHHHHHHTCSEEEEEE--ECSSHHHHHHHHHHHHHHHH-----
T ss_pred EEEeeCCeEEEEEEEEcc--------cHHHHHHHHHHHHHHHhccccceEEEE--EecChHHHHHHHHHHHHHHH-----
Confidence 788999999999887743 5555444444444331 1135666543 34555567777777765443
Q ss_pred hhhhhcCCceeEEe
Q psy17938 110 RRYPAIDAQYCSLL 123 (307)
Q Consensus 110 RRAMkaGAkGIKI~ 123 (307)
|.|-|.|.+.
T Consensus 75 ----klgykdinvr 84 (96)
T 2jvf_A 75 ----KLGYKDINVR 84 (96)
T ss_dssp ----HHTCSEEEEE
T ss_pred ----HhCCCceEEE
Confidence 5677777776
No 19
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=69.87 E-value=2.1 Score=31.93 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=23.6
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
..++.|....-|.+||++|+.|++|++.
T Consensus 8 ~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~ 35 (82)
T 1zzk_A 8 TTQVTIPKDLAGSIIGKGGQRIKQIRHE 35 (82)
T ss_dssp EEEEEEETTTGGGGTCGGGHHHHHHHHH
T ss_pred EEEEEEChHhcCeeECCCchHHHHHHHH
Confidence 4567778888899999999999988875
No 20
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=69.66 E-value=1.7 Score=31.70 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=23.1
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
..++.|-...-|.+||++|+.|++|++.
T Consensus 4 ~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 31 (76)
T 1dtj_A 4 LVEMAVPENLVGAILGKGGKTLVEYQEL 31 (76)
T ss_dssp EEEEEEETTTHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEChHHcceEECCCchHHHHHHHH
Confidence 4567777888899999999999887764
No 21
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=68.88 E-value=1 Score=33.20 Aligned_cols=29 Identities=10% Similarity=0.426 Sum_probs=24.5
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHH
Q psy17938 38 ARTEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 38 ~~I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
..+++.|...+-|.+||++|+.|++|++.
T Consensus 5 ~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~ 33 (73)
T 2axy_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREE 33 (73)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEEChhHeeeEECCCCHHHHHHHHH
Confidence 35677888888999999999999988774
No 22
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=68.65 E-value=6.4 Score=35.90 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=36.4
Q ss_pred CeEEEEEEecccc---eeeccCcccHHHH----HHHHHHHhCCCCCeEEEEEEEecCCCcCHHHH
Q psy17938 38 ARTEIIIMATRTQ---NVLGDKGRRIREL----TSVVQKRFKFADGAIELYAEKVATRGLCAIAQ 95 (307)
Q Consensus 38 ~~I~I~I~tarPg---~IIGr~G~~IkkL----~~~LqK~~~~~~~kI~I~I~eVknP~l~A~lL 95 (307)
..+..+|++++++ ++||++|+.|+++ +.+|++.|+. +..+++.|..-++=.-++..+
T Consensus 228 ~~i~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~-~v~l~l~vkv~~~w~~~~~~~ 291 (301)
T 1wf3_A 228 LYIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGK-KVYLDLEVKVYPDWRKDPEAL 291 (301)
T ss_dssp EEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTS-EEEEEEEEEECTTGGGCHHHH
T ss_pred EEEEEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCC-ceEEEEEEEECCCcccCHHHH
Confidence 3567788998885 6999999999765 5677778853 233455544433333334333
No 23
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=68.28 E-value=2.8 Score=33.08 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=24.5
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
.+++.|...+-|.|||++|+.|++|+++
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~ 35 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQ 35 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHH
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHH
Confidence 5678889999999999999999988764
No 24
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=66.90 E-value=1.9 Score=32.13 Aligned_cols=28 Identities=21% Similarity=0.403 Sum_probs=23.2
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
..++.|-..+-|.+||++|+.|++|++.
T Consensus 7 ~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 34 (82)
T 1wvn_A 7 THELTIPNNLIGCIIGRQGANINEIRQM 34 (82)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEchHhccceeCCCchhHHHHHHH
Confidence 4567777788899999999999988764
No 25
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=65.67 E-value=1.7 Score=33.41 Aligned_cols=64 Identities=22% Similarity=0.313 Sum_probs=38.8
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCC-------eEEEEEEEecCCCcCHHHHHHHHHHHHHcC
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADG-------AIELYAEKVATRGLCAIAQAESLRYKLIGG 106 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~-------kI~I~I~eVknP~l~A~lLAe~IA~QLE~R 106 (307)
..+|.|-..+-|.|||++|+.|++|++.-.-+....+. .-.|.|. -+| ++...|..+..++.+.
T Consensus 16 ~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~--G~~--~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 16 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRIT--GDP--YKVQQAKEMVLELIRD 86 (94)
T ss_dssp EEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEE--ECT--TTHHHHHHHHHHHHCC
T ss_pred EEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEE--eCH--HHHHHHHHHHHHHHhc
Confidence 45677777888999999999999988754333222111 0112222 244 5666677666665443
No 26
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=64.41 E-value=1.6 Score=33.48 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=24.3
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHH
Q psy17938 37 PARTEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 37 ~~~I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
....++.|-..+-|.|||++|+.|++|++.
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~ 43 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQE 43 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHH
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHH
Confidence 345677778888899999999999887764
No 27
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=64.35 E-value=1.8 Score=31.81 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=23.0
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
..++.|-...-|.+||++|+.|++|++.
T Consensus 6 ~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~ 33 (76)
T 2p2r_A 6 SHELTIPNDLIGCIIGRQGAKINEIRQM 33 (76)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEChHHcceEECCCChHHHHHHHH
Confidence 4566777788899999999999988764
No 28
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=64.08 E-value=0.73 Score=36.32 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=44.9
Q ss_pred EEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCe-EEEE----EEEecCCCcCHHHHHHHHHHHHHcChhhhhhh
Q psy17938 40 TEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGA-IELY----AEKVATRGLCAIAQAESLRYKLIGGLAVRRYP 113 (307)
Q Consensus 40 I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~k-I~I~----I~eVknP~l~A~lLAe~IA~QLE~Rv~FRRAM 113 (307)
.++.|...+-|.+||++|+.|+++++. +| .+ |+|. .+.|.-++.+|.--|..+-+.+|..++.=|.|
T Consensus 17 ~~i~I~~dkIg~vIG~gGk~Ik~I~e~----tG---v~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~ie~~~~vp~~~ 88 (91)
T 2cpq_A 17 EEFVVREDLMGLAIGTHGSNIQQARKV----PG---VTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFIQVPSGP 88 (91)
T ss_dssp EEEECCHHHHHHHHTTTTHHHHHHHTS----TT---EEEEEEETTTTEEEEEESSHHHHHHHHHHHSCCCCCCCCCSSC
T ss_pred EEEEEChHHhhhhcCCCcHHHHHHHHH----hC---CeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhhheEEecChhh
Confidence 445555677788999999999887763 43 22 3332 01255567788888888888888877655443
No 29
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=64.05 E-value=6.7 Score=31.06 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=25.1
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHHH
Q psy17938 37 PARTEIIIMATRTQNVLGDKGRRIRELTSVV 67 (307)
Q Consensus 37 ~~~I~I~I~tarPg~IIGr~G~~IkkL~~~L 67 (307)
+..++|.|...+-+.|||++|+.|++|+++-
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~T 40 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDA 40 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHH
Confidence 4467888889999999999999999887753
No 30
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=61.82 E-value=2.6 Score=30.79 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=23.2
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
..++.|...+-|.+||++|+.|++|+++
T Consensus 6 ~~~i~I~~~~ig~iIG~gG~~I~~I~e~ 33 (71)
T 1vig_A 6 YVEINIDHKFHRHLIGKSGANINRIKDQ 33 (71)
T ss_dssp EEEEEECSSHHHHHTCSSCCHHHHHHHH
T ss_pred EEEEEECHHHhhhhcCCCCccHHHHHHH
Confidence 4566777788889999999999998874
No 31
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=60.55 E-value=2.6 Score=34.71 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=26.5
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHHHH
Q psy17938 37 PARTEIIIMATRTQNVLGDKGRRIRELTSVVQ 68 (307)
Q Consensus 37 ~~~I~I~I~tarPg~IIGr~G~~IkkL~~~Lq 68 (307)
+..+++.|....-|.+||++|+.|++|++.-.
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg 33 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFAS 33 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHT
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHC
Confidence 34678888899999999999999998887543
No 32
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=59.28 E-value=2.5 Score=32.16 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=22.7
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
..++.|...+-|.+||++|+.|++|++.
T Consensus 15 ~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 42 (89)
T 1j5k_A 15 TTQVTIPKDLAGSIIGKGGQRIKQIRHE 42 (89)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEChhhcceeECCCCHhHHHHHHH
Confidence 4566777788889999999999888764
No 33
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=57.44 E-value=4.8 Score=34.02 Aligned_cols=58 Identities=14% Similarity=0.274 Sum_probs=42.1
Q ss_pred HHHHHHHhhccCCeeeeEEEEcCC--eEEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q psy17938 15 LDEFLTRELAEDGYSGVEIRFTPA--RTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFK 72 (307)
Q Consensus 15 IRefl~k~l~~AGIs~IeI~Rt~~--~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~ 72 (307)
..+|+.+.+.-|.+.+|.+.-... ...|.+--..-+..||++|++++...+.....+.
T Consensus 78 ~~~fI~naLsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~id 137 (144)
T 2cxc_A 78 LERIVKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFG 137 (144)
T ss_dssp HHHHHHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeC
Confidence 468888889999999999875333 3444444455668999999999777766665553
No 34
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.88 E-value=2.7 Score=32.00 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=21.8
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
.+++.|-..+-|.+||++|+.|++|++.
T Consensus 11 ~~~i~VP~~~vG~IIGkgG~tIk~Iqe~ 38 (83)
T 2dgr_A 11 TIQVRVPYRVVGLVVGPKGATIKRIQQR 38 (83)
T ss_dssp EEEEECCHHHHHHHHTTTTSSHHHHHHH
T ss_pred EEEEEeChHHeeeeECCCchHHHHHHHH
Confidence 3455556677788999999999998875
No 35
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=51.58 E-value=3.9 Score=31.47 Aligned_cols=33 Identities=15% Similarity=0.374 Sum_probs=24.3
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHHHHh
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSVVQKRF 71 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~ 71 (307)
..++.|-..+-|.+||++|+.|++|++.-.-+.
T Consensus 18 t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I 50 (94)
T 2cte_A 18 SATVAIPKEHHRFVIGKNGEKLQDLELKTATKI 50 (94)
T ss_dssp EEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCC
T ss_pred EEEEEEChHHeeeeECCCChhHHHHHHHHCCEE
Confidence 455566667778899999999999887543333
No 36
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=51.17 E-value=4.9 Score=31.21 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=24.5
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHHHH
Q psy17938 38 ARTEIIIMATRTQNVLGDKGRRIRELTSVVQ 68 (307)
Q Consensus 38 ~~I~I~I~tarPg~IIGr~G~~IkkL~~~Lq 68 (307)
..+++.|-..+-+.|||++|+.|++|++.-.
T Consensus 17 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg 47 (97)
T 2ctl_A 17 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHD 47 (97)
T ss_dssp CEEEEECCTTTHHHHSCSSSCHHHHHHHHHT
T ss_pred eeEEEEECHHHhhhcCCCCchhHHHHHHHHC
Confidence 3566677777788999999999999887543
No 37
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=50.09 E-value=18 Score=33.36 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=43.9
Q ss_pred HHHHHHHhhccCCeeeeEEEE-cCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEE
Q psy17938 15 LDEFLTRELAEDGYSGVEIRF-TPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELY 81 (307)
Q Consensus 15 IRefl~k~l~~AGIs~IeI~R-t~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~ 81 (307)
..+|+.+.+.-|.+.+|.|.- ......|.+--..-+..||++|++++ |...|. .++++|.
T Consensus 160 p~~fi~nalsPA~V~~V~i~~~~~~~a~V~V~~~qlslAIGk~GqNvr-LA~~Lt------g~~idI~ 220 (251)
T 2asb_A 160 PARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNAR-LAARLT------GWRIDIR 220 (251)
T ss_dssp HHHHHHHHTTTSCCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHH-HHHHHH------SCEEEEE
T ss_pred HHHHHHhccCCcceEEEEEEcCCCcEEEEEEChHHhhhhhcCCcCcHH-HHHHHH------CCEecce
Confidence 458899999999999998743 34567777777777789999999994 444443 3566663
No 38
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=48.86 E-value=3.1 Score=32.85 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=23.8
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHH
Q psy17938 37 PARTEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 37 ~~~I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
|...++.|-..+-+.|||++|+.|++|++.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~ee 45 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDE 45 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHH
Confidence 345666777778889999999999888764
No 39
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=47.45 E-value=10 Score=32.05 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=39.2
Q ss_pred HhhccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHH
Q psy17938 21 RELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVV 67 (307)
Q Consensus 21 k~l~~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~L 67 (307)
..+.++.+-++-+.-..+.+.+.+.....|..+|.+|++++.+.+.|
T Consensus 19 e~~t~a~~~dcvid~~~dr~i~vVk~g~vGa~IG~~G~ri~~i~~el 65 (144)
T 2cxc_A 19 HSITGVTAYRCIVDEENNRLIFLVSEGEAGRAIGRGGRLIKLLREAL 65 (144)
T ss_dssp HHHHSCCEEEEEEEGGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHH
T ss_pred HHHhCCCeeeEEEeCCCCEEEEEEeCCCccccCccCchHHHHHHHHh
Confidence 45667888888776667899998888888999999999999987766
No 40
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=45.31 E-value=20 Score=34.19 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=45.0
Q ss_pred HHHHHHHhhccCCeeeeEE-EEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEE
Q psy17938 15 LDEFLTRELAEDGYSGVEI-RFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELY 81 (307)
Q Consensus 15 IRefl~k~l~~AGIs~IeI-~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~ 81 (307)
..+|+.+.+.-|-+.+|.| .-......|.+--..-+.-||++|++++ |...|. .++++|.
T Consensus 279 ~~~fi~nal~Pa~v~~v~~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvr-la~~Lt------g~~idi~ 339 (344)
T 1hh2_P 279 PKQLIANALAPATVIEVEILDKENKAARVLVPPTQLSLAIGKGGQNAR-LAAKLT------GWKIDIK 339 (344)
T ss_dssp HHHHHHHHTCSSCCSEEEEEETTTTEEEEEECTTSHHHHHCGGGHHHH-HHHHHH------SCEEEEE
T ss_pred HHHHHHHhcCccEEEEEEEEcCCCCEEEEEEChHHcchhhcCCCccHH-HHHHHH------CCEecee
Confidence 4589999998999999998 4344677887777888889999999994 444443 3566664
No 41
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=44.34 E-value=61 Score=28.92 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHhhccCCeeeeEEEEcCCeEEEEEEecccceee-ccCcccHHHHHHHHHHHhCCCCCeEEEEEEE
Q psy17938 9 GVFRAELDEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVL-GDKGRRIRELTSVVQKRFKFADGAIELYAEK 84 (307)
Q Consensus 9 ~~i~~kIRefl~k~l~~AGIs~IeI~Rt~~~I~I~I~tarPg~II-Gr~G~~IkkL~~~LqK~~~~~~~kI~I~I~e 84 (307)
.....+|++.+.+.-.-.++.++.+.+.....-+++|..-|+..- .+--+-.+++++.|++.++. ..+.|.++.
T Consensus 205 ~~~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~--~~v~ih~ep 279 (283)
T 3h90_A 205 DEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG--SDVIIHQDP 279 (283)
T ss_dssp HHHHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT--CEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC--CeEEEEecc
Confidence 345566777776532223466677777777788889987775431 11122347777777777763 456666553
No 42
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=44.24 E-value=13 Score=37.52 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=43.5
Q ss_pred HHHHHHHHHhh-ccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q psy17938 13 AELDEFLTREL-AEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFK 72 (307)
Q Consensus 13 ~kIRefl~k~l-~~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~ 72 (307)
.+|++-+.+.+ .++.+++||.+ +-+|.|||..|..+. ++|.-+++|.+.|+|+.-
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 62 (636)
T 2ycb_A 7 EEIKRTIMQRLPERVQVAKVEFE----GPEVVIYTKNPEIIT-ENGNLIRDIAKDIRKRII 62 (636)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEEE----TTEEEEEESCTHHHH-SCTHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEE----CCEEEEEeCCHHHhh-cccHHHHHHHHHhhceEE
Confidence 67777788888 67899999986 678999999998876 445677888888877553
No 43
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=44.00 E-value=6.4 Score=30.48 Aligned_cols=31 Identities=13% Similarity=0.383 Sum_probs=24.5
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHHHH
Q psy17938 38 ARTEIIIMATRTQNVLGDKGRRIRELTSVVQ 68 (307)
Q Consensus 38 ~~I~I~I~tarPg~IIGr~G~~IkkL~~~Lq 68 (307)
...++.|-..+-+.+||++|+.|++|++.-.
T Consensus 17 vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg 47 (95)
T 2ctm_A 17 VSEDVPLDHRVHARIIGARGKAIRKIMDEFK 47 (95)
T ss_dssp CCEEEECCTTTHHHHHCSSSCHHHHHHHHHT
T ss_pred EEEEEEECHHHccccCCCCcchHHHHHHHHC
Confidence 3566677777888999999999999887543
No 44
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=43.50 E-value=14 Score=37.46 Aligned_cols=55 Identities=18% Similarity=0.450 Sum_probs=40.1
Q ss_pred HHHHHHHHHhh-ccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q psy17938 13 AELDEFLTREL-AEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFK 72 (307)
Q Consensus 13 ~kIRefl~k~l-~~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~ 72 (307)
.+|++-+.+.+ .++.+++||.+ +-+|.|||-.|..+. ++|.-+++|.+.|+|+.-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 71 (651)
T 3af5_A 16 RDIRAVVNQMVPKEAKITEIEFE----GPELVIYVKNPEAIM-KDGELIKDLAKVLKKRIS 71 (651)
T ss_dssp HHHHHHHTTTSCTTSCEEEEEEC----SSSEEEEESSCC------CCSHHHHHHHHTSCEE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEE----CCeEEEEeCCHHHhh-cccHHHHHHHHHhhceEE
Confidence 57777777777 67889999985 677899999999886 456778888888887653
No 45
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=43.49 E-value=6.1 Score=33.01 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=24.3
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHH
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSVV 67 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~L 67 (307)
.+++.|....-|.+||++|+.|++|++.-
T Consensus 7 ~~~i~vp~~~ig~iIGkgG~~Ik~i~~~t 35 (178)
T 2anr_A 7 FLKVLIPSYAAGSIIGKGGQTIVQLQKET 35 (178)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEChhHeeeeECCCcHHHHHHHHHh
Confidence 46677788888999999999999988754
No 46
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=41.47 E-value=5.4 Score=32.67 Aligned_cols=30 Identities=10% Similarity=0.401 Sum_probs=24.5
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHHH
Q psy17938 38 ARTEIIIMATRTQNVLGDKGRRIRELTSVV 67 (307)
Q Consensus 38 ~~I~I~I~tarPg~IIGr~G~~IkkL~~~L 67 (307)
..+++.|....-|.+||++|+.|++|++.-
T Consensus 5 ~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~t 34 (160)
T 2jzx_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREES 34 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEEchhheeeeECCCcHHHHHHHHHH
Confidence 356777778888999999999999888754
No 47
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=41.33 E-value=21 Score=35.93 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhc-cCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEEEecCCCcC
Q psy17938 13 AELDEFLTRELA-EDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAEKVATRGLC 91 (307)
Q Consensus 13 ~kIRefl~k~l~-~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~I~eVknP~l~ 91 (307)
.+-+|.+.+-.. +||+.+| .-.++.-+|.+++.+||.++|+.|..++++.. ..+.. ...+..|-..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~g~~~~~~~~i~~----~~~~~-------~~~~~~p~~~ 140 (636)
T 2ycb_A 74 EKAIRKIHEIVPEEAKITNI--SFDDVTCEVIIEARKPGLVIGKYGSTSREIVK----NTGWA-------PKILRTPPIS 140 (636)
T ss_dssp HHHHHHHHHTSCSTTCEEEE--EEETTTTEEEEEESCTHHHHCTTSHHHHHHHH----HHCCE-------EEEEECCSSC
T ss_pred HHHHHHHHHhCCCccCccce--EecCCCceEEEEECCCCccccccchhHHHHhh----ccCCc-------cceeecCCcc
Confidence 344556665553 6788754 44566778899999999999999876665544 55432 1223366555
Q ss_pred HHHHHHHH
Q psy17938 92 AIAQAESL 99 (307)
Q Consensus 92 A~lLAe~I 99 (307)
...++.-.
T Consensus 141 ~~~~~~i~ 148 (636)
T 2ycb_A 141 SEIIERIR 148 (636)
T ss_dssp CHHHHHHH
T ss_pred hhHHHHHH
Confidence 44444333
No 48
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=41.21 E-value=25 Score=35.56 Aligned_cols=51 Identities=24% Similarity=0.468 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhc-cCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHH
Q psy17938 13 AELDEFLTRELA-EDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTS 65 (307)
Q Consensus 13 ~kIRefl~k~l~-~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~ 65 (307)
.+-+|++.+... +||+.+| .-.++.-+|.+++.+||.++|+.|..++++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~ 134 (651)
T 3af5_A 83 EEAEKLIFEIVPKEAEITNI--AFDPSVGEVLIEAKKPGLVIGKNGETLRLITQ 134 (651)
T ss_dssp HHHHHHHHHHSCGGGCCCEE--EEETTTTEEEEEESSTTTTSCTTSHHHHHHHH
T ss_pred HHHHHHHHHhCCCccCccce--eecCCCceEEEEECCCCccccccchhHHHHhh
Confidence 344556655553 6888754 44566778889999999999999876666554
No 49
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=40.73 E-value=6.2 Score=32.21 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=22.1
Q ss_pred EEEEEEecccceeeccCcccHHHHHHH
Q psy17938 40 TEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 40 I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
.++.|-..+-|.+||++|+.|++|++.
T Consensus 4 ~~~~Vp~~~~g~iIGk~G~~Ik~i~~~ 30 (164)
T 2jvz_A 4 QEIMIPAGKAGLVIGKGGETIKQLQER 30 (164)
T ss_dssp EEEEECTTCHHHHTCTTTHHHHHHHHT
T ss_pred EEEEechhheeEEECCChHHHHHHHHH
Confidence 456667778889999999999988763
No 50
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=40.70 E-value=12 Score=37.92 Aligned_cols=54 Identities=20% Similarity=0.390 Sum_probs=42.9
Q ss_pred HHHHHHHHHhh-ccCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHh
Q psy17938 13 AELDEFLTREL-AEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRF 71 (307)
Q Consensus 13 ~kIRefl~k~l-~~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~ 71 (307)
.+|++-+.+.+ .++.+++||.+ +-+|.|||..|..+. ++|.-+++|.+.|+|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 65 (640)
T 2xr1_A 11 LDLKHKIEKNLPAGVTITDVEFE----GPQLVLYTEEPRKFA-DDGNIIRNLAKELRTRI 65 (640)
T ss_dssp HHHHHHHHHHSCTTCCCCCEEEE----TTEEEEEESCHHHHH-HCTHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEE----CCEEEEEeCCHHHhc-cccHHHHHHHHHhhceE
Confidence 67777788888 67899999996 578999999998876 44566778877777755
No 51
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=39.57 E-value=25 Score=35.58 Aligned_cols=51 Identities=27% Similarity=0.423 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhc-cCCeeeeEEEEcCCeEEEEEEecccceeeccCcccHHHHHH
Q psy17938 13 AELDEFLTRELA-EDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTS 65 (307)
Q Consensus 13 ~kIRefl~k~l~-~AGIs~IeI~Rt~~~I~I~I~tarPg~IIGr~G~~IkkL~~ 65 (307)
.+-+|++.+-.. +||+.+ |.-.++.-+|.|++.+||.++|+.|+.++++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~ 129 (640)
T 2xr1_A 78 EDSISIIEEVVPKESVISS--YYFDPDSGEVIIEAEKPGLVIGKHGATLREITK 129 (640)
T ss_dssp HHHHHHHHHHSCGGGCEEE--EEECTTTSEEEEEESSHHHHHCSSSHHHHHHHH
T ss_pred HHHHHHHHHhCCCccCccc--eeecCCCceEEEEeCCCCcccccchhhHHHHHh
Confidence 344455555543 678865 555677889999999999999999876666544
No 52
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=39.51 E-value=7.7 Score=32.39 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=24.1
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHH
Q psy17938 38 ARTEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 38 ~~I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
..+++.|....-|.+||++|+.|++|++.
T Consensus 104 ~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~ 132 (178)
T 2anr_A 104 NQVKIIVPNSTAGLIIGKGGATVKAIMEQ 132 (178)
T ss_dssp GEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEchhheeeeECCCcHHHHHHHHH
Confidence 35678888888899999999999887753
No 53
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=39.02 E-value=37 Score=27.36 Aligned_cols=26 Identities=8% Similarity=0.192 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhccCCeeeeEEEEc
Q psy17938 11 FRAELDEFLTRELAEDGYSGVEIRFT 36 (307)
Q Consensus 11 i~~kIRefl~k~l~~AGIs~IeI~Rt 36 (307)
+=..+++|+++++.++.|..++++|.
T Consensus 13 LP~~~~~fi~~~fp~~~i~~v~~e~~ 38 (128)
T 3elg_A 13 LPVAAREMIGKHFSQTKVAYIKIEKD 38 (128)
T ss_dssp SCHHHHHHHHHHCTTSCEEEEEEEEC
T ss_pred CCHHHHHHHHHHCCCCceEEEEEEcc
Confidence 34678999999999999999999997
No 54
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=37.35 E-value=11 Score=30.98 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=23.5
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHH
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSVV 67 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~L 67 (307)
..++.|-...-|.+||++|+.|++|++.-
T Consensus 86 ~~~i~vp~~~~g~iIGkgG~~I~~i~~~t 114 (163)
T 3krm_A 86 ETHIRVPASAAGRVIGKGGKTVNELQNLT 114 (163)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEcChhheeeEEcCCChHHHHHHHHh
Confidence 44677777888999999999999987643
No 55
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=36.18 E-value=11 Score=31.28 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=23.5
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
.+++.|-...-|.+||++|+.|++|++.
T Consensus 105 ~~~i~vp~~~~g~iIGkgG~~Ik~I~~~ 132 (174)
T 1j4w_A 105 EFNFIVPTGKTGLIIGKGGETIKSISQQ 132 (174)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCchHHHHHHHH
Confidence 5677778888899999999999888764
No 56
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=35.88 E-value=9.5 Score=31.76 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=23.9
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHH
Q psy17938 39 RTEIIIMATRTQNVLGDKGRRIRELTSVV 67 (307)
Q Consensus 39 ~I~I~I~tarPg~IIGr~G~~IkkL~~~L 67 (307)
..++.|-...-|.+||++|+.|++|++.-
T Consensus 4 ~~~~~vp~~~vg~iIGkgG~~Ik~i~~~t 32 (174)
T 1j4w_A 4 MIDVPIPRFAVGIVIGRNGEMIKKIQNDA 32 (174)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEChhheeeeecCCchHHHHHHHHh
Confidence 45677778888999999999999888753
No 57
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=35.48 E-value=39 Score=32.67 Aligned_cols=60 Identities=13% Similarity=0.204 Sum_probs=42.9
Q ss_pred HHHHHHHhhccCCeeeeEEEE-cCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEE
Q psy17938 15 LDEFLTRELAEDGYSGVEIRF-TPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELY 81 (307)
Q Consensus 15 IRefl~k~l~~AGIs~IeI~R-t~~~I~I~I~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~ 81 (307)
..+|+.+.+.-|.+.+|++.- ......|.+--..-+..||++|++++. -..| + .++|+|.
T Consensus 283 p~~fi~nalsPA~V~~V~~~~~~~~~a~V~V~~~qlslAIGk~GqNvrL-A~~L---t---g~~idI~ 343 (366)
T 1k0r_A 283 PARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARL-AARL---T---GWRIDIR 343 (366)
T ss_dssp HHHHHHHHTTTSCCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHH-HHHH---H---CCEEEEE
T ss_pred HHHHHHHhcCCcceeEEEEEcCCCcEEEEEEChHHhhhccCCCcHHHHH-HHHH---H---CCeeeee
Confidence 468899999999999995543 335677777667777899999999843 3333 3 3567764
No 58
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=34.54 E-value=9.3 Score=31.22 Aligned_cols=31 Identities=16% Similarity=0.423 Sum_probs=24.8
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHHHH
Q psy17938 38 ARTEIIIMATRTQNVLGDKGRRIRELTSVVQ 68 (307)
Q Consensus 38 ~~I~I~I~tarPg~IIGr~G~~IkkL~~~Lq 68 (307)
...++.|-...-|.+||++|+.|++|++.-.
T Consensus 89 ~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tg 119 (160)
T 2jzx_A 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTG 119 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHS
T ss_pred EEEEEEEChhheeeEECCCCHHHHHHHHHhC
Confidence 4567777778889999999999998877543
No 59
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=32.21 E-value=1.1e+02 Score=22.37 Aligned_cols=73 Identities=12% Similarity=0.031 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHh--hccCCeeeeEEEEcCCeEEEEEEecccceee-ccCcccHHHHHHHHHHHhCCCCCeEEEEEE
Q psy17938 9 GVFRAELDEFLTRE--LAEDGYSGVEIRFTPARTEIIIMATRTQNVL-GDKGRRIRELTSVVQKRFKFADGAIELYAE 83 (307)
Q Consensus 9 ~~i~~kIRefl~k~--l~~AGIs~IeI~Rt~~~I~I~I~tarPg~II-Gr~G~~IkkL~~~LqK~~~~~~~kI~I~I~ 83 (307)
.....+|++.+.+. =.=.++-++.+.+....+-+.+|+..|+.+- .+.-+-.+++++.|++.|+. ..+.|.++
T Consensus 9 ~~~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~--~~vtIh~e 84 (94)
T 3byp_A 9 PEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPG--LQATIHVE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTT--EEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCC--CEEEEEeC
Confidence 34556777777643 1123455677777777788889988775432 22223457888888888864 25555554
No 60
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=31.74 E-value=9.5 Score=31.11 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=22.8
Q ss_pred EEEEEEecccceeeccCcccHHHHHHH
Q psy17938 40 TEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 40 I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
+++.|....-|.+||++|+.|++|++.
T Consensus 93 ~~i~vp~~~~g~iIGk~G~~I~~i~~~ 119 (164)
T 2jvz_A 93 IDVPVPRHSVGVVIGRSGEMIKKIQND 119 (164)
T ss_dssp BCCEEETTTHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEChhhccccCCCCcHhHHHHHHH
Confidence 677777888899999999999887764
No 61
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=30.64 E-value=16 Score=30.15 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEEEEecccceeeccCcccHHHHHHH
Q psy17938 40 TEIIIMATRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 40 I~I~I~tarPg~IIGr~G~~IkkL~~~ 66 (307)
.+|.+....-|.+||++|++++.+++.
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~ 95 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDK 95 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHH
Confidence 566667777788999999999887653
No 62
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=30.15 E-value=58 Score=29.88 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhccCCeeeeEE---EEcC-CeEEEEEEecccce-----eeccCcccHHHHHHHHHHHhCCCCCeEEE
Q psy17938 13 AELDEFLTRELAEDGYSGVEI---RFTP-ARTEIIIMATRTQN-----VLGDKGRRIRELTSVVQKRFKFADGAIEL 80 (307)
Q Consensus 13 ~kIRefl~k~l~~AGIs~IeI---~Rt~-~~I~I~I~tarPg~-----IIGr~G~~IkkL~~~LqK~~~~~~~kI~I 80 (307)
..++++|+.+.++-.=+-||| -|-| .+.+|-+++.-|++ -||.+|++++.+.+.|. +.+|+|
T Consensus 83 ~lvk~Lfe~EVPEI~dG~veI~~iaRe~G~R~KiAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~------gekIDI 153 (251)
T 2asb_A 83 NLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELS------GEKIDI 153 (251)
T ss_dssp HHHHHHHHHHCHHHHTTSEEEEEEEEETTTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTT------TCEEEE
T ss_pred HHHHHHHHhcchHhhcCeEEEEEEecCCCceeEEEEEcCCCCCCHHHHHhCCCchHHHHHHHHhC------CCeEEE
Confidence 356777877776432222444 5655 89999999988764 78999999988866543 466666
No 63
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=28.32 E-value=25 Score=33.01 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=40.7
Q ss_pred hhhhhhhhcCCceeEEeeeccceeeEEEeeeeee-ecCCCc-----ccceEeeehhHHHHhhcCC
Q psy17938 107 LAVRRYPAIDAQYCSLLAQFGWSILILVVAVGTL-HQCPGC-----RELRIILTFLDSIVSLKEV 165 (307)
Q Consensus 107 v~FRRAMkaGAkGIKI~~~~~~~~~~~~~~sgrl-ar~e~~-----~e~~i~l~~l~~i~~~w~~ 165 (307)
.+-+||.+||..||.|.|+.|| |..-..|-.- .|+-.| ...|..+-.++-|...+.+
T Consensus 156 ~AA~rA~~AGFDgVEIH~ahGY--Ll~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~ 218 (358)
T 4a3u_A 156 KAARHALKAGFDGVQIHAANGY--LIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGK 218 (358)
T ss_dssp HHHHHHHHTTCSEEEEEECTTS--HHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHcCCCeEeecccCCC--cHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCc
Confidence 3567889999999999988888 3333334333 666655 4567777778888888877
No 64
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=28.31 E-value=61 Score=31.29 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhccCCeeeeEEE---EcC-CeEEEEEEecccc-----eeeccCcccHHHHHHHHHHHhCCCCCeEEE
Q psy17938 13 AELDEFLTRELAEDGYSGVEIR---FTP-ARTEIIIMATRTQ-----NVLGDKGRRIRELTSVVQKRFKFADGAIEL 80 (307)
Q Consensus 13 ~kIRefl~k~l~~AGIs~IeI~---Rt~-~~I~I~I~tarPg-----~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I 80 (307)
..+++.|+.+.++-.=+-|||. |-| .+.+|-+++.-|+ ..||.+|++++.+.+.|. +.+|+|
T Consensus 206 ~lv~~Lfe~EVPEI~dG~VeIk~iARepG~RaKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~------gekIDI 276 (366)
T 1k0r_A 206 NLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELS------GEKIDI 276 (366)
T ss_dssp HHHHHHHHHHCHHHHTTSEEEEEEEEETTTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTT------TCEEEE
T ss_pred HHHHHHHHhcchhhcCCeEEEEEEEecCCCeEEEEEEeCCCCCCCcccccCCcchHHHHHHHHhC------CCeEEE
Confidence 3566777777664322235554 555 8999999997664 578999999988887664 456666
No 65
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=27.15 E-value=89 Score=24.46 Aligned_cols=52 Identities=10% Similarity=0.108 Sum_probs=33.6
Q ss_pred EecccceeeccCccc---HHHHHHHHHHHhCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHH
Q psy17938 45 MATRTQNVLGDKGRR---IRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKL 103 (307)
Q Consensus 45 ~tarPg~IIGr~G~~---IkkL~~~LqK~~~~~~~kI~I~I~eVknP~l~A~lLAe~IA~QL 103 (307)
|.-+|-+.||++|-. ++++.+.|+++= =|.| .-..+...+..-+|+.|+++.
T Consensus 16 h~l~pvv~IGk~GlT~~vi~ei~~aL~~~E-----LIKV--kvl~~~~~~~~e~a~~la~~t 70 (98)
T 1jo0_A 16 HHLNPVVMLGGNGLTEGVLAEIENALNHHE-----LIKV--KVAGADRETKQLIINAIVRET 70 (98)
T ss_dssp TTBCCSEEECTTCSCHHHHHHHHHHHHHHS-----EEEE--EETTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHCC-----eEEE--EEeCCCHHHHHHHHHHHHHHh
Confidence 456788999999864 677777777643 2333 335555566666666666543
No 66
>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*
Probab=25.91 E-value=28 Score=33.20 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=39.7
Q ss_pred hhhhhhhhcCCceeEEeeeccceeeEEEeeeeee-ecCCCc-----ccceEeeehhHHHHhhcCC
Q psy17938 107 LAVRRYPAIDAQYCSLLAQFGWSILILVVAVGTL-HQCPGC-----RELRIILTFLDSIVSLKEV 165 (307)
Q Consensus 107 v~FRRAMkaGAkGIKI~~~~~~~~~~~~~~sgrl-ar~e~~-----~e~~i~l~~l~~i~~~w~~ 165 (307)
.+-|||.+||..||.|.|+.|| |..-..|-.- .|+--| ...|..+-.++-|...|.+
T Consensus 176 ~AA~rA~~AGFDgVEIH~AhGY--Ll~QFLSp~tN~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg~ 238 (400)
T 4gbu_A 176 QAAKNSIAAGADGVEIHSANGY--LLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGH 238 (400)
T ss_dssp HHHHHHHHTTCSEEEEECCTTS--HHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhcCcCeeeecccccc--hHHheecCcCCCCccccCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 3557788999999999988888 3232333333 555444 4567777788888888877
No 67
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=24.85 E-value=20 Score=30.74 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=12.7
Q ss_pred Ccccccccccc-cCCCCc
Q psy17938 247 EQRIWNQVKGL-KSPFTP 263 (307)
Q Consensus 247 ~~~~w~qikgR-yskf~~ 263 (307)
++-.|||+++| || |.+
T Consensus 125 d~~LW~rl~dR~ys-~~s 141 (153)
T 2fhd_A 125 APVNIRRFQGRDLS-FST 141 (153)
T ss_dssp CHHHHTTCCSCSCC-TTC
T ss_pred cHHHHHHhcCCccc-cCC
Confidence 34479999999 99 666
No 68
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=23.68 E-value=97 Score=24.64 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=32.7
Q ss_pred EecccceeeccCccc---HHHHHHHHHHHhCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHH
Q psy17938 45 MATRTQNVLGDKGRR---IRELTSVVQKRFKFADGAIELYAEKVATRGLCAIAQAESLRYKL 103 (307)
Q Consensus 45 ~tarPg~IIGr~G~~---IkkL~~~LqK~~~~~~~kI~I~I~eVknP~l~A~lLAe~IA~QL 103 (307)
|.-+|-+.||++|-. ++++.+.|+++= =|.|. -..+...+..-+|+.|+++.
T Consensus 15 h~Lkpvv~IGK~GlTe~vi~ei~~aL~~hE-----LIKVk--vl~~~~~d~~e~a~~la~~t 69 (104)
T 1rq8_A 15 HNIDPIFQIGKGGINENMIKQIDDTLENRE-----LIKVH--VLQNNFDDKKELAETLSEAT 69 (104)
T ss_dssp TSSCCSCEECSSSCCHHHHHHHHHHHHHSS-----EEEEE--ECCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHCC-----cEEEE--EeCCCHHHHHHHHHHHHHHh
Confidence 456788999999864 577777777532 23343 34555556666666666543
No 69
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=23.45 E-value=11 Score=36.45 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=17.1
Q ss_pred cceeeccCc--ccHHHHHHHHHH
Q psy17938 49 TQNVLGDKG--RRIRELTSVVQK 69 (307)
Q Consensus 49 Pg~IIGr~G--~~IkkL~~~LqK 69 (307)
=+.+||++| ++|++|+++-.-
T Consensus 41 Hs~IIGkgG~~sNIkkImeEtgv 63 (376)
T 3n89_A 41 YSLMTSDNGDHENVASIMAETNT 63 (376)
T ss_dssp HHHHHSCCSSSCSHHHHHHHHTC
T ss_pred hhhhccCCChHHHHHHHHHHhCC
Confidence 357999999 999999886543
No 70
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.89 E-value=66 Score=26.03 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=30.3
Q ss_pred ceeeccCcccHHHHHHHHHHHhCCCCCeEEEE-------------------EEEecCCCcCHHHHHHHHHHHHHc
Q psy17938 50 QNVLGDKGRRIRELTSVVQKRFKFADGAIELY-------------------AEKVATRGLCAIAQAESLRYKLIG 105 (307)
Q Consensus 50 g~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~-------------------I~eVknP~l~A~lLAe~IA~QLE~ 105 (307)
|.|||.+|..+++|++ .++. +|.|. -+.|.-++.++.--|..+.+.|-.
T Consensus 31 g~IIGpgG~tiK~I~~----eTG~---kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~ 98 (119)
T 2yqr_A 31 EKVEGPGCSYLQHIQI----ETGA---KVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQ 98 (119)
T ss_dssp HHHSCGGGHHHHHHHH----HHCC---EEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eeEECCCChHHHHHHH----HHCC---EEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 5699999999988765 4543 44442 223444555666666666666543
No 71
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.72 E-value=23 Score=27.75 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.3
Q ss_pred cccceeeccCcccHHHHHHH
Q psy17938 47 TRTQNVLGDKGRRIRELTSV 66 (307)
Q Consensus 47 arPg~IIGr~G~~IkkL~~~ 66 (307)
..=+.+||++|++|++|++.
T Consensus 36 ~~h~~IIG~~G~~Ik~i~~~ 55 (102)
T 2ctf_A 36 WLHRFIIGKKGQNLAKITQQ 55 (102)
T ss_dssp TTHHHHHTTTTCHHHHHHHH
T ss_pred HHHhhhcCCCCccHHHHHHH
Confidence 33457999999999999885
No 72
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=22.71 E-value=3.3e+02 Score=22.79 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhccCCeeeeEEEE--cCCeEEEEEEecccceeeccCcccH---HHHHHHHHHHhC--CCCCeEEEEEE
Q psy17938 11 FRAELDEFLTRELAEDGYSGVEIRF--TPARTEIIIMATRTQNVLGDKGRRI---RELTSVVQKRFK--FADGAIELYAE 83 (307)
Q Consensus 11 i~~kIRefl~k~l~~AGIs~IeI~R--t~~~I~I~I~tarPg~IIGr~G~~I---kkL~~~LqK~~~--~~~~kI~I~I~ 83 (307)
+..++.+.+..-+.. |+.=++++- ....-.+.|++.+|+ |-.+ .++...|...+. ..++-=.=+..
T Consensus 10 ~~~~v~~li~p~~~~-g~eLvdve~~~~g~~~~LrV~ID~~~------gi~lddC~~vSr~is~~LD~~~~d~i~~~Y~L 82 (164)
T 1ib8_A 10 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE------GITLNDTADLTEMISPVLDTIKPDPFPEQYFL 82 (164)
T ss_dssp HHHHHHHHHHHHHCS-SSEEEEEEEEEETTEEEEEEEEECSS------CCCHHHHHHHHHHHGGGTTTCCSCCCCSCEEE
T ss_pred HHHHHHHHHHHHHcC-CcEEEEEEEEecCCCcEEEEEEECCC------CCCHHHHHHHHHHHHHHhccccccCCCCCeEE
Confidence 456888999888888 976655554 455566666777774 4444 677778887775 33221123568
Q ss_pred EecCCCcC
Q psy17938 84 KVATRGLC 91 (307)
Q Consensus 84 eVknP~l~ 91 (307)
||..|+++
T Consensus 83 EVSSPGld 90 (164)
T 1ib8_A 83 EITSPGLE 90 (164)
T ss_dssp EEECCSSS
T ss_pred EEeCCCCC
Confidence 99999885
No 73
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=21.72 E-value=93 Score=26.12 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=34.0
Q ss_pred EEcCCeEEEEE-EecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEEEecC
Q psy17938 34 RFTPARTEIII-MATRTQNVLGDKGRRIRELTSVVQKRFKFADGAIELYAEKVAT 87 (307)
Q Consensus 34 ~Rt~~~I~I~I-~tarPg~IIGr~G~~IkkL~~~LqK~~~~~~~kI~I~I~eVkn 87 (307)
+|..+.+.|.| ++++.|.=...+.+=.+.|.+.|+..++.....|.|.+.|...
T Consensus 77 ~~~~~~v~I~I~~~a~~gRt~eqK~~l~~~l~~~L~~~~gi~~~dv~I~I~E~~~ 131 (161)
T 3c6v_A 77 EQHPNFVALTIYHLARTMTSDEQRQGFLKRIDAFLTPMFEPKGIDWEYFVTEAPR 131 (161)
T ss_dssp EECSSEEEEEEEEETTSCCSHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEEEECG
T ss_pred cccCCEEEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHcCCChhhEEEEEEEcCc
Confidence 34555666666 3334433222233335778888888888877788888888764
No 74
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*
Probab=20.67 E-value=57 Score=31.63 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=49.3
Q ss_pred HHHHHHHHc--ChhhhhhhhcCCceeEEeeeccceeeEEEeeeeee-ecCCC-----cccceEeeehhHHHHhhcCCCCc
Q psy17938 97 ESLRYKLIG--GLAVRRYPAIDAQYCSLLAQFGWSILILVVAVGTL-HQCPG-----CRELRIILTFLDSIVSLKEVCKP 168 (307)
Q Consensus 97 e~IA~QLE~--Rv~FRRAMkaGAkGIKI~~~~~~~~~~~~~~sgrl-ar~e~-----~~e~~i~l~~l~~i~~~w~~~~~ 168 (307)
+.|.+-.+. ..+-|||.++|..||.|.++.||= ..-..|-.- .|+.. +...|..+-.++-|..-|.+..+
T Consensus 160 ~eI~~ii~~~~~~aa~~a~~aGfdgveih~~~GYL--l~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v 237 (407)
T 3tjl_A 160 QEVKDLVYEAYTNAAQKAMDAGFDYIELHAAHGYL--LDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKI 237 (407)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTCSEEEEECCTTSH--HHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEECCccchH--HHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeE
Confidence 445555555 467788999999999999887772 222233222 44443 34667777788888888876223
Q ss_pred cchhhhhhhh
Q psy17938 169 DIIIALWEYF 178 (307)
Q Consensus 169 ~~v~~LWeyf 178 (307)
.+=...||.|
T Consensus 238 ~~r~~~~~~~ 247 (407)
T 3tjl_A 238 GIRISPWATF 247 (407)
T ss_dssp EEEECTTCCG
T ss_pred EEEECccccc
Confidence 3323345544
Done!